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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:TTC28-UBE2L3 (FusionGDB2 ID:94344)

Fusion Gene Summary for TTC28-UBE2L3

check button Fusion gene summary
Fusion gene informationFusion gene name: TTC28-UBE2L3
Fusion gene ID: 94344
HgeneTgene
Gene symbol

TTC28

UBE2L3

Gene ID

23331

7332

Gene nametetratricopeptide repeat domain 28ubiquitin conjugating enzyme E2 L3
SynonymsTPRBKE2-F1|L-UBC|UBCH7|UbcM4
Cytomap

22q12.1

22q11.21

Type of geneprotein-codingprotein-coding
Descriptiontetratricopeptide repeat protein 28TPR repeat protein 28TPR repeat-containing big gene cloned at KeioTPR-containing big gene cloned at Keioubiquitin-conjugating enzyme E2 L3E2 ubiquitin-conjugating enzyme L3ubiquitin carrier protein L3ubiquitin conjugating enzyme E2L 3ubiquitin-conjugating enzyme E2-F1ubiquitin-conjugating enzyme UBCH7ubiquitin-protein ligase L3
Modification date2020031320200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000397906, ENST00000490475, 
ENST00000458578, ENST00000342192, 
ENST00000545681, 
Fusion gene scores* DoF score46 X 33 X 13=1973420 X 14 X 7=1960
# samples 5322
** MAII scorelog2(53/19734*10)=-5.218547244106
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(22/1960*10)=-3.15527822547791
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: TTC28 [Title/Abstract] AND UBE2L3 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointTTC28(29025540)-UBE2L3(21947150), # samples:2
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneUBE2L3

GO:0000209

protein polyubiquitination

10888878|14765125

TgeneUBE2L3

GO:0006355

regulation of transcription, DNA-templated

17003263

TgeneUBE2L3

GO:0016567

protein ubiquitination

9990509|21532592

TgeneUBE2L3

GO:0070979

protein K11-linked ubiquitination

20061386

TgeneUBE2L3

GO:0071385

cellular response to glucocorticoid stimulus

17003263


check buttonFusion gene breakpoints across TTC28 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across UBE2L3 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4OVTCGA-36-1577-01ATTC28chr22

29025540

-UBE2L3chr22

21947150

+
ChimerDB4OVTCGA-36-1577TTC28chr22

29025539

-UBE2L3chr22

21947149

+
ChimerDB4OVTCGA-36-1577-01ATTC28chr22

29025540

-UBE2L3chr22

21947150

+
ChimerDB4OVTCGA-36-1577-01ATTC28chr22

28838874

-UBE2L3chr22

21947150

+


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Fusion Gene ORF analysis for TTC28-UBE2L3

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000397906ENST00000458578TTC28chr22

29025540

-UBE2L3chr22

21947150

+
In-frameENST00000397906ENST00000342192TTC28chr22

29025540

-UBE2L3chr22

21947150

+
5CDS-intronENST00000397906ENST00000545681TTC28chr22

29025540

-UBE2L3chr22

21947150

+
intron-3CDSENST00000490475ENST00000458578TTC28chr22

29025540

-UBE2L3chr22

21947150

+
intron-3CDSENST00000490475ENST00000342192TTC28chr22

29025540

-UBE2L3chr22

21947150

+
intron-intronENST00000490475ENST00000545681TTC28chr22

29025540

-UBE2L3chr22

21947150

+
In-frameENST00000397906ENST00000458578TTC28chr22

29025539

-UBE2L3chr22

21947149

+
In-frameENST00000397906ENST00000342192TTC28chr22

29025539

-UBE2L3chr22

21947149

+
5CDS-intronENST00000397906ENST00000545681TTC28chr22

29025539

-UBE2L3chr22

21947149

+
intron-3CDSENST00000490475ENST00000458578TTC28chr22

29025539

-UBE2L3chr22

21947149

+
intron-3CDSENST00000490475ENST00000342192TTC28chr22

29025539

-UBE2L3chr22

21947149

+
intron-intronENST00000490475ENST00000545681TTC28chr22

29025539

-UBE2L3chr22

21947149

+
intron-3CDSENST00000397906ENST00000458578TTC28chr22

28838874

-UBE2L3chr22

21947150

+
intron-3CDSENST00000397906ENST00000342192TTC28chr22

28838874

-UBE2L3chr22

21947150

+
intron-intronENST00000397906ENST00000545681TTC28chr22

28838874

-UBE2L3chr22

21947150

+
5UTR-3CDSENST00000490475ENST00000458578TTC28chr22

28838874

-UBE2L3chr22

21947150

+
5UTR-3CDSENST00000490475ENST00000342192TTC28chr22

28838874

-UBE2L3chr22

21947150

+
5UTR-intronENST00000490475ENST00000545681TTC28chr22

28838874

-UBE2L3chr22

21947150

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000397906TTC28chr2229025540-ENST00000458578UBE2L3chr2221947150+154452394960288
ENST00000397906TTC28chr2229025540-ENST00000342192UBE2L3chr2221947150+332652394960288
ENST00000397906TTC28chr2229025539-ENST00000458578UBE2L3chr2221947149+154452394960288
ENST00000397906TTC28chr2229025539-ENST00000342192UBE2L3chr2221947149+332652394960288

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000397906ENST00000458578TTC28chr2229025540-UBE2L3chr2221947150+0.0034783260.9965217
ENST00000397906ENST00000342192TTC28chr2229025540-UBE2L3chr2221947150+0.0037092510.9962908
ENST00000397906ENST00000458578TTC28chr2229025539-UBE2L3chr2221947149+0.0034783260.9965217
ENST00000397906ENST00000342192TTC28chr2229025539-UBE2L3chr2221947149+0.0037092510.9962908

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Fusion Genomic Features for TTC28-UBE2L3


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
TTC28chr2228838873-UBE2L3chr2221947149+0.0347869730.96521294
TTC28chr2229025539-UBE2L3chr2221947149+6.26E-111
TTC28chr2229025539-UBE2L3chr2221947149+6.26E-111
TTC28chr2228838873-UBE2L3chr2221947149+0.0347869730.96521294
TTC28chr2229025539-UBE2L3chr2221947149+6.26E-111
TTC28chr2229025539-UBE2L3chr2221947149+6.26E-111

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for TTC28-UBE2L3


check button Go to

FGviewer for the breakpoints of chr22:29025540-chr22:21947150

.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneTTC28chr22:29025539chr22:21947149ENST00000397906-22358_91127.02482.0RepeatNote=TPR 1
HgeneTTC28chr22:29025539chr22:21947149ENST00000397906-22393_125127.02482.0RepeatNote=TPR 2
HgeneTTC28chr22:29025540chr22:21947150ENST00000397906-22358_91127.02482.0RepeatNote=TPR 1
HgeneTTC28chr22:29025540chr22:21947150ENST00000397906-22393_125127.02482.0RepeatNote=TPR 2
TgeneUBE2L3chr22:29025539chr22:21947149ENST00000545681032_1490123.0DomainUBC core
TgeneUBE2L3chr22:29025540chr22:21947150ENST00000545681032_1490123.0DomainUBC core

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneTTC28chr22:29025539chr22:21947149ENST00000397906-2231948_2006127.02482.0Compositional biasNote=Ser-rich
HgeneTTC28chr22:29025539chr22:21947149ENST00000397906-2232201_2335127.02482.0Compositional biasNote=Ser-rich
HgeneTTC28chr22:29025540chr22:21947150ENST00000397906-2231948_2006127.02482.0Compositional biasNote=Ser-rich
HgeneTTC28chr22:29025540chr22:21947150ENST00000397906-2232201_2335127.02482.0Compositional biasNote=Ser-rich
HgeneTTC28chr22:29025539chr22:21947149ENST00000397906-2231037_1070127.02482.0RepeatNote=TPR 25
HgeneTTC28chr22:29025539chr22:21947149ENST00000397906-2231077_1110127.02482.0RepeatNote=TPR 26
HgeneTTC28chr22:29025539chr22:21947149ENST00000397906-2231117_1150127.02482.0RepeatNote=TPR 27
HgeneTTC28chr22:29025539chr22:21947149ENST00000397906-2231169_1202127.02482.0RepeatNote=TPR 28
HgeneTTC28chr22:29025539chr22:21947149ENST00000397906-223126_159127.02482.0RepeatNote=TPR 3
HgeneTTC28chr22:29025539chr22:21947149ENST00000397906-223196_229127.02482.0RepeatNote=TPR 4
HgeneTTC28chr22:29025539chr22:21947149ENST00000397906-223234_267127.02482.0RepeatNote=TPR 5
HgeneTTC28chr22:29025539chr22:21947149ENST00000397906-223274_307127.02482.0RepeatNote=TPR 6
HgeneTTC28chr22:29025539chr22:21947149ENST00000397906-223314_347127.02482.0RepeatNote=TPR 7
HgeneTTC28chr22:29025539chr22:21947149ENST00000397906-223354_387127.02482.0RepeatNote=TPR 8
HgeneTTC28chr22:29025539chr22:21947149ENST00000397906-223394_427127.02482.0RepeatNote=TPR 9
HgeneTTC28chr22:29025539chr22:21947149ENST00000397906-223434_467127.02482.0RepeatNote=TPR 10
HgeneTTC28chr22:29025539chr22:21947149ENST00000397906-223474_507127.02482.0RepeatNote=TPR 11
HgeneTTC28chr22:29025539chr22:21947149ENST00000397906-223514_547127.02482.0RepeatNote=TPR 12
HgeneTTC28chr22:29025539chr22:21947149ENST00000397906-223554_587127.02482.0RepeatNote=TPR 13
HgeneTTC28chr22:29025539chr22:21947149ENST00000397906-223594_627127.02482.0RepeatNote=TPR 14
HgeneTTC28chr22:29025539chr22:21947149ENST00000397906-223634_667127.02482.0RepeatNote=TPR 15
HgeneTTC28chr22:29025539chr22:21947149ENST00000397906-223674_707127.02482.0RepeatNote=TPR 16
HgeneTTC28chr22:29025539chr22:21947149ENST00000397906-223714_747127.02482.0RepeatNote=TPR 17
HgeneTTC28chr22:29025539chr22:21947149ENST00000397906-223754_787127.02482.0RepeatNote=TPR 18
HgeneTTC28chr22:29025539chr22:21947149ENST00000397906-223794_827127.02482.0RepeatNote=TPR 19
HgeneTTC28chr22:29025539chr22:21947149ENST00000397906-223834_867127.02482.0RepeatNote=TPR 20
HgeneTTC28chr22:29025539chr22:21947149ENST00000397906-223877_910127.02482.0RepeatNote=TPR 21
HgeneTTC28chr22:29025539chr22:21947149ENST00000397906-223917_950127.02482.0RepeatNote=TPR 22
HgeneTTC28chr22:29025539chr22:21947149ENST00000397906-223957_990127.02482.0RepeatNote=TPR 23
HgeneTTC28chr22:29025539chr22:21947149ENST00000397906-223997_1030127.02482.0RepeatNote=TPR 24
HgeneTTC28chr22:29025540chr22:21947150ENST00000397906-2231037_1070127.02482.0RepeatNote=TPR 25
HgeneTTC28chr22:29025540chr22:21947150ENST00000397906-2231077_1110127.02482.0RepeatNote=TPR 26
HgeneTTC28chr22:29025540chr22:21947150ENST00000397906-2231117_1150127.02482.0RepeatNote=TPR 27
HgeneTTC28chr22:29025540chr22:21947150ENST00000397906-2231169_1202127.02482.0RepeatNote=TPR 28
HgeneTTC28chr22:29025540chr22:21947150ENST00000397906-223126_159127.02482.0RepeatNote=TPR 3
HgeneTTC28chr22:29025540chr22:21947150ENST00000397906-223196_229127.02482.0RepeatNote=TPR 4
HgeneTTC28chr22:29025540chr22:21947150ENST00000397906-223234_267127.02482.0RepeatNote=TPR 5
HgeneTTC28chr22:29025540chr22:21947150ENST00000397906-223274_307127.02482.0RepeatNote=TPR 6
HgeneTTC28chr22:29025540chr22:21947150ENST00000397906-223314_347127.02482.0RepeatNote=TPR 7
HgeneTTC28chr22:29025540chr22:21947150ENST00000397906-223354_387127.02482.0RepeatNote=TPR 8
HgeneTTC28chr22:29025540chr22:21947150ENST00000397906-223394_427127.02482.0RepeatNote=TPR 9
HgeneTTC28chr22:29025540chr22:21947150ENST00000397906-223434_467127.02482.0RepeatNote=TPR 10
HgeneTTC28chr22:29025540chr22:21947150ENST00000397906-223474_507127.02482.0RepeatNote=TPR 11
HgeneTTC28chr22:29025540chr22:21947150ENST00000397906-223514_547127.02482.0RepeatNote=TPR 12
HgeneTTC28chr22:29025540chr22:21947150ENST00000397906-223554_587127.02482.0RepeatNote=TPR 13
HgeneTTC28chr22:29025540chr22:21947150ENST00000397906-223594_627127.02482.0RepeatNote=TPR 14
HgeneTTC28chr22:29025540chr22:21947150ENST00000397906-223634_667127.02482.0RepeatNote=TPR 15
HgeneTTC28chr22:29025540chr22:21947150ENST00000397906-223674_707127.02482.0RepeatNote=TPR 16
HgeneTTC28chr22:29025540chr22:21947150ENST00000397906-223714_747127.02482.0RepeatNote=TPR 17
HgeneTTC28chr22:29025540chr22:21947150ENST00000397906-223754_787127.02482.0RepeatNote=TPR 18
HgeneTTC28chr22:29025540chr22:21947150ENST00000397906-223794_827127.02482.0RepeatNote=TPR 19
HgeneTTC28chr22:29025540chr22:21947150ENST00000397906-223834_867127.02482.0RepeatNote=TPR 20
HgeneTTC28chr22:29025540chr22:21947150ENST00000397906-223877_910127.02482.0RepeatNote=TPR 21
HgeneTTC28chr22:29025540chr22:21947150ENST00000397906-223917_950127.02482.0RepeatNote=TPR 22
HgeneTTC28chr22:29025540chr22:21947150ENST00000397906-223957_990127.02482.0RepeatNote=TPR 23
HgeneTTC28chr22:29025540chr22:21947150ENST00000397906-223997_1030127.02482.0RepeatNote=TPR 24
TgeneUBE2L3chr22:29025539chr22:21947149ENST00000342192042_1499.0155.0DomainUBC core
TgeneUBE2L3chr22:29025539chr22:21947149ENST00000458578042_14967.0213.0DomainUBC core
TgeneUBE2L3chr22:29025540chr22:21947150ENST00000342192042_1499.0155.0DomainUBC core
TgeneUBE2L3chr22:29025540chr22:21947150ENST00000458578042_14967.0213.0DomainUBC core


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Fusion Gene Sequence for TTC28-UBE2L3


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>In-frame_ENST00000397906_ENST00000458578_TCGA-36-1577-01A_TTC28_chr22_29025540_-_UBE2L3_chr22_21947150_length(transcript)=1544nt_BP=523nt
GGGGGCGCGCGCGCGGTTTGGGGGCAGTGAGGGGCGCCGCGGCGGCGCGCAGCACGGCGGGAACATGGCGCGCGGAACCGGCGCGCGCGC
CTAGCTGGCGGGACCGTTAGCTCGAGGCGGACGCGGCCCGGGCCCCGTGGGGATGGAGCAGTCGCCGCCGCCGGCGCCCGAGCCGACCCA
AGGGCCGACCCCCGCAAGGAGCCGAAGGCGGCGGGAGCCAGAGTCGCCGCCGGCGTCGGCGCCGATTCCTCTCTTTGGTGCTGACACTAT
TGGCCAGAGAAGTCCTGATGGACCGGTACTGAGCAAAGCTGAATTTGTTGAGAAAGTTCGTCAGAGTAATCAGGCCTGTCATGATGGAGA
TTTCCACACAGCTATTGTTCTGTATAATGAAGCCCTGGCTGTTGACCCTCAGAACTGCATCTTATACAGCAATAGATCTGCAGCCTACAT
GAAAATCCAGCAGTATGACAAGGCACTGGATGATGCAATCAAAGCTCGACTTCTCAATCCCAAGTGGCCAAAGGAGCTTGAAGAAATCCG
CAAATGTGGGATGAAAAACTTCCGTAACATCCAGGTTGATGAAGCTAATTTATTGACTTGGCAAGGGCTTATTGTTCCTGACAACCCTCC
ATATGATAAGGGAGCCTTCAGAATCGAAATCAACTTTCCAGCAGAGTACCCATTCAAACCACCGAAGATCACATTTAAAACAAAGATCTA
TCACCCAAACATCGACGAAAAGGGGCAGGTCTGTCTGCCAGTAATTAGTGCCGAAAACTGGAAGCCAGCAACCAAAACCGACCAAGTAAT
CCAGTCCCTCATAGCACTGGTGAATGACCCCCAGCCTGAGCACCCGCTTCGGGCTGACCTAGCTGAAGAATACTCTAAGGACCGTAAAAA
ATTCTGTAAGAATGCTGAAGAGTTTACAAAGAAATATGGGGAAAAGCGACCTGTGGACTAAAATCTGCCACGATTGGTTCCAGCAAGTGT
GAGCAGAGACCCCGTGCAGTGCATTCAGACACCCCGCAAAGCAGGACTCTGTGGAAATTGACACGTGCCACCGCCTGGCGTTCGCTTGTG
GCAGTTACTAACTTTCTACAGTTTTCTTAATCAAAAGTGGTCTAGGTAACCTGTAAAGAAAGGATTAAAAATTTAAGATGTTCTAGTTCT
GCTCTCTTTGTTTTAAAAATCACTGCTTCAATCTACTTCAAAAGAATGGTGTTTCTTTTCTTGTCCAATTTTATCCAAAATCTTCAAGTT
ACATTTAACCCATAAGGTTTAAAAAAAAGGAAAAAAAACGGTTGTGGTTCCCTTTCTTCCCTACCCTTGCCACTCCCACTTTCTGGCACC
GAGTTTATTTTTCACTTACTTACTTCCCCAGACCCCGGGCTCGCCTCCACAAAGGAGAAAAGACTGCCCTGGCGGTCCTGGTGGCTTTTC
TTAGCATGTGTGGCACTGTTGCCCAGTGTGGGAGTTGGTTTAAATTCTCCTGACTCCAGTTTATAACATCCTTTTAAAAAATTTAAAAAC

>In-frame_ENST00000397906_ENST00000458578_TCGA-36-1577-01A_TTC28_chr22_29025540_-_UBE2L3_chr22_21947150_length(amino acids)=288AA_start in transcript=94_stop in transcript=960
MAGPLARGGRGPGPVGMEQSPPPAPEPTQGPTPARSRRRREPESPPASAPIPLFGADTIGQRSPDGPVLSKAEFVEKVRQSNQACHDGDF
HTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPY
DKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKF

--------------------------------------------------------------
>In-frame_ENST00000397906_ENST00000342192_TCGA-36-1577-01A_TTC28_chr22_29025540_-_UBE2L3_chr22_21947150_length(transcript)=3326nt_BP=523nt
GGGGGCGCGCGCGCGGTTTGGGGGCAGTGAGGGGCGCCGCGGCGGCGCGCAGCACGGCGGGAACATGGCGCGCGGAACCGGCGCGCGCGC
CTAGCTGGCGGGACCGTTAGCTCGAGGCGGACGCGGCCCGGGCCCCGTGGGGATGGAGCAGTCGCCGCCGCCGGCGCCCGAGCCGACCCA
AGGGCCGACCCCCGCAAGGAGCCGAAGGCGGCGGGAGCCAGAGTCGCCGCCGGCGTCGGCGCCGATTCCTCTCTTTGGTGCTGACACTAT
TGGCCAGAGAAGTCCTGATGGACCGGTACTGAGCAAAGCTGAATTTGTTGAGAAAGTTCGTCAGAGTAATCAGGCCTGTCATGATGGAGA
TTTCCACACAGCTATTGTTCTGTATAATGAAGCCCTGGCTGTTGACCCTCAGAACTGCATCTTATACAGCAATAGATCTGCAGCCTACAT
GAAAATCCAGCAGTATGACAAGGCACTGGATGATGCAATCAAAGCTCGACTTCTCAATCCCAAGTGGCCAAAGGAGCTTGAAGAAATCCG
CAAATGTGGGATGAAAAACTTCCGTAACATCCAGGTTGATGAAGCTAATTTATTGACTTGGCAAGGGCTTATTGTTCCTGACAACCCTCC
ATATGATAAGGGAGCCTTCAGAATCGAAATCAACTTTCCAGCAGAGTACCCATTCAAACCACCGAAGATCACATTTAAAACAAAGATCTA
TCACCCAAACATCGACGAAAAGGGGCAGGTCTGTCTGCCAGTAATTAGTGCCGAAAACTGGAAGCCAGCAACCAAAACCGACCAAGTAAT
CCAGTCCCTCATAGCACTGGTGAATGACCCCCAGCCTGAGCACCCGCTTCGGGCTGACCTAGCTGAAGAATACTCTAAGGACCGTAAAAA
ATTCTGTAAGAATGCTGAAGAGTTTACAAAGAAATATGGGGAAAAGCGACCTGTGGACTAAAATCTGCCACGATTGGTTCCAGCAAGTGT
GAGCAGAGACCCCGTGCAGTGCATTCAGACACCCCGCAAAGCAGGACTCTGTGGAAATTGACACGTGCCACCGCCTGGCGTTCGCTTGTG
GCAGTTACTAACTTTCTACAGTTTTCTTAATCAAAAGTGGTCTAGGTAACCTGTAAAGAAAGGATTAAAAATTTAAGATGTTCTAGTTCT
GCTCTCTTTGTTTTAAAAATCACTGCTTCAATCTACTTCAAAAGAATGGTGTTTCTTTTCTTGTCCAATTTTATCCAAAATCTTCAAGTT
ACATTTAACCCATAAGGTTTAAAAAAAAGGAAAAAAAACGGTTGTGGTTCCCTTTCTTCCCTACCCTTGCCACTCCCACTTTCTGGCACC
GAGTTTATTTTTCACTTACTTACTTCCCCAGACCCCGGGCTCGCCTCCACAAAGGAGAAAAGACTGCCCTGGCGGTCCTGGTGGCTTTTC
TTAGCATGTGTGGCACTGTTGCCCAGTGTGGGAGTTGGTTTAAATTCTCCTGACTCCAGTTTATAACATCCTTTTAAAAAATTTAAAAAC
AAACAGCCACACCCCTCCTCCAGTCCTTCTCCTCAGTTCTTGTGTGAAACTCCAGCTGATGTTACCACAGTAACATCAGTTAATTGGGCA
AGCCCTGATGTCAGTGTGTGTAACTGACCTCTGGCCTGGCCTGCACAGAGAAGCCCTATAATCACAGGTCTGTGGTGGCCCCGAAATGGG
GGGCCTGCTAGTCAGGAGGATGCTGTGCACACTGTGTGTGATGAATCTCGCCAGAAAGGCTCCTGAGGTCCCAGGTTGGCACTTCTCCCT
GCAGCCATTGTAGAAGATCTGCTGGTCCTTGCAGGCAAAGCTACAGCCAGAATGTCCGTTTGAAACTCCTAGCTCATCTGTCACCGAGCT
TCATCCGAATGTGCCACGGAGCTTGCTCTCCACTTCCTCCGTGCAGTGGCCCTGCCACAGCCCTCCCTCGGCACACTTTGACCCTTTGTA
GGATTGGAATTAGCAGGACTCGGCTATTTAAAGCACCAGTCTGGGGTCGCCTGGGCCCCTGCTGACCCCCTCCTCCAGAGCAGCCAGCCC
AGCCCGGGAACAAGACGGACTTCCTCTCCCTTCGGACTCACAGCCTTTGCAGAGTCAAGCTCCACTTGAAGCTCACTCAGTAATATCCTT
TCAATGTGTTTTATATTGTTTTGACTGCCTTTTTTTGTAGAAATAAAAATTGACCTTAGAATTTATCGTCAGATAAACTTGTAAAGATTT
GAATATTAATGTCTTTTCAAGGCAAATGGGATTGTCCCCGCACTAGTAGAGAATCCATGTCGCTCTGACACCCCAAGGAAGCCGACGATC
CAAATGCCGTGTGTCACCAACCCCGCTTCTGCCACTGGCGGCTTCCCTTCTTGGCTCTTGGGGGGGACTAGATCCTGTGGAGAAGATGAC
TTAAACTTTGCTTTTTGTTTTAATTTTAATTCTATAACTTGAGATCTTTCCGGGGCCTACAGGCGTGTAAGACAGCTTGGTCTGGTCTGT
GCAGAAGTGGGGAGTGATGGGCAGGTTCGGCAGCCTAACATTGTTCAGGCGCATGGCCCCTGCGGTGTGTACACGAACTCGGCTTCTTTT
GTCCTAGGTACGCCAAGGGCAGGTTTCTGGAGACTCCCTTGTGCCCGGGATGGCAAGGGCACCGGGCTGGCGTTTCCACATCTGTCTTCA
TTAGCAGAAAAGTGATGATGGATTTTATTTCACTCACACTCCAGTTTGTAATAAAATGCCAAATTCTGTCAGCTATCCAAACAAGCCACC
ATTTGTTCTTGTTGCTTCTCTGGATCCAGAAATGTTGCCATTCTTGGAAACTGTCCCATTGCTTCGTATTTCTGCCAACGTAGCTCTGCC
TGCCTGTCAACCCCTCACTGCACTCTGCTCATCACGGGAGGATACCTGTGTGCCGGCAGCCCCTCAGGGACTCTCAGCCCTGGCACTGGC
ACCCCAGGGTTGGCCCCGTCAGCAGAGGCTTGGCTTTCGAGCCAGTGGGTGTCTCTCCTTTGGGCCTGGGCGGCTTGCTCCTGCCAGCCA
TGCCTTCAGGGTAGGCTCTGAGCAAGCTGGCGAACAGCCCTGGCTGCTCCAAAACCAAAAAGCTGGGTCCTCTGGAGGAGGGGCGAGCTG
TGGAGCAGCCACCCACTGCTGCCCCAAGCTCACTCAGGAATTCACACCCGCCTGGTTTCTTGAAGTGTGCTGGGTCCTTCCCTCTGCTCC

>In-frame_ENST00000397906_ENST00000342192_TCGA-36-1577-01A_TTC28_chr22_29025540_-_UBE2L3_chr22_21947150_length(amino acids)=288AA_start in transcript=94_stop in transcript=960
MAGPLARGGRGPGPVGMEQSPPPAPEPTQGPTPARSRRRREPESPPASAPIPLFGADTIGQRSPDGPVLSKAEFVEKVRQSNQACHDGDF
HTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPY
DKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKF

--------------------------------------------------------------
>In-frame_ENST00000397906_ENST00000458578_TCGA-36-1577_TTC28_chr22_29025539_-_UBE2L3_chr22_21947149_length(transcript)=1544nt_BP=523nt
GGGGGCGCGCGCGCGGTTTGGGGGCAGTGAGGGGCGCCGCGGCGGCGCGCAGCACGGCGGGAACATGGCGCGCGGAACCGGCGCGCGCGC
CTAGCTGGCGGGACCGTTAGCTCGAGGCGGACGCGGCCCGGGCCCCGTGGGGATGGAGCAGTCGCCGCCGCCGGCGCCCGAGCCGACCCA
AGGGCCGACCCCCGCAAGGAGCCGAAGGCGGCGGGAGCCAGAGTCGCCGCCGGCGTCGGCGCCGATTCCTCTCTTTGGTGCTGACACTAT
TGGCCAGAGAAGTCCTGATGGACCGGTACTGAGCAAAGCTGAATTTGTTGAGAAAGTTCGTCAGAGTAATCAGGCCTGTCATGATGGAGA
TTTCCACACAGCTATTGTTCTGTATAATGAAGCCCTGGCTGTTGACCCTCAGAACTGCATCTTATACAGCAATAGATCTGCAGCCTACAT
GAAAATCCAGCAGTATGACAAGGCACTGGATGATGCAATCAAAGCTCGACTTCTCAATCCCAAGTGGCCAAAGGAGCTTGAAGAAATCCG
CAAATGTGGGATGAAAAACTTCCGTAACATCCAGGTTGATGAAGCTAATTTATTGACTTGGCAAGGGCTTATTGTTCCTGACAACCCTCC
ATATGATAAGGGAGCCTTCAGAATCGAAATCAACTTTCCAGCAGAGTACCCATTCAAACCACCGAAGATCACATTTAAAACAAAGATCTA
TCACCCAAACATCGACGAAAAGGGGCAGGTCTGTCTGCCAGTAATTAGTGCCGAAAACTGGAAGCCAGCAACCAAAACCGACCAAGTAAT
CCAGTCCCTCATAGCACTGGTGAATGACCCCCAGCCTGAGCACCCGCTTCGGGCTGACCTAGCTGAAGAATACTCTAAGGACCGTAAAAA
ATTCTGTAAGAATGCTGAAGAGTTTACAAAGAAATATGGGGAAAAGCGACCTGTGGACTAAAATCTGCCACGATTGGTTCCAGCAAGTGT
GAGCAGAGACCCCGTGCAGTGCATTCAGACACCCCGCAAAGCAGGACTCTGTGGAAATTGACACGTGCCACCGCCTGGCGTTCGCTTGTG
GCAGTTACTAACTTTCTACAGTTTTCTTAATCAAAAGTGGTCTAGGTAACCTGTAAAGAAAGGATTAAAAATTTAAGATGTTCTAGTTCT
GCTCTCTTTGTTTTAAAAATCACTGCTTCAATCTACTTCAAAAGAATGGTGTTTCTTTTCTTGTCCAATTTTATCCAAAATCTTCAAGTT
ACATTTAACCCATAAGGTTTAAAAAAAAGGAAAAAAAACGGTTGTGGTTCCCTTTCTTCCCTACCCTTGCCACTCCCACTTTCTGGCACC
GAGTTTATTTTTCACTTACTTACTTCCCCAGACCCCGGGCTCGCCTCCACAAAGGAGAAAAGACTGCCCTGGCGGTCCTGGTGGCTTTTC
TTAGCATGTGTGGCACTGTTGCCCAGTGTGGGAGTTGGTTTAAATTCTCCTGACTCCAGTTTATAACATCCTTTTAAAAAATTTAAAAAC

>In-frame_ENST00000397906_ENST00000458578_TCGA-36-1577_TTC28_chr22_29025539_-_UBE2L3_chr22_21947149_length(amino acids)=288AA_start in transcript=94_stop in transcript=960
MAGPLARGGRGPGPVGMEQSPPPAPEPTQGPTPARSRRRREPESPPASAPIPLFGADTIGQRSPDGPVLSKAEFVEKVRQSNQACHDGDF
HTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPY
DKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKF

--------------------------------------------------------------
>In-frame_ENST00000397906_ENST00000342192_TCGA-36-1577_TTC28_chr22_29025539_-_UBE2L3_chr22_21947149_length(transcript)=3326nt_BP=523nt
GGGGGCGCGCGCGCGGTTTGGGGGCAGTGAGGGGCGCCGCGGCGGCGCGCAGCACGGCGGGAACATGGCGCGCGGAACCGGCGCGCGCGC
CTAGCTGGCGGGACCGTTAGCTCGAGGCGGACGCGGCCCGGGCCCCGTGGGGATGGAGCAGTCGCCGCCGCCGGCGCCCGAGCCGACCCA
AGGGCCGACCCCCGCAAGGAGCCGAAGGCGGCGGGAGCCAGAGTCGCCGCCGGCGTCGGCGCCGATTCCTCTCTTTGGTGCTGACACTAT
TGGCCAGAGAAGTCCTGATGGACCGGTACTGAGCAAAGCTGAATTTGTTGAGAAAGTTCGTCAGAGTAATCAGGCCTGTCATGATGGAGA
TTTCCACACAGCTATTGTTCTGTATAATGAAGCCCTGGCTGTTGACCCTCAGAACTGCATCTTATACAGCAATAGATCTGCAGCCTACAT
GAAAATCCAGCAGTATGACAAGGCACTGGATGATGCAATCAAAGCTCGACTTCTCAATCCCAAGTGGCCAAAGGAGCTTGAAGAAATCCG
CAAATGTGGGATGAAAAACTTCCGTAACATCCAGGTTGATGAAGCTAATTTATTGACTTGGCAAGGGCTTATTGTTCCTGACAACCCTCC
ATATGATAAGGGAGCCTTCAGAATCGAAATCAACTTTCCAGCAGAGTACCCATTCAAACCACCGAAGATCACATTTAAAACAAAGATCTA
TCACCCAAACATCGACGAAAAGGGGCAGGTCTGTCTGCCAGTAATTAGTGCCGAAAACTGGAAGCCAGCAACCAAAACCGACCAAGTAAT
CCAGTCCCTCATAGCACTGGTGAATGACCCCCAGCCTGAGCACCCGCTTCGGGCTGACCTAGCTGAAGAATACTCTAAGGACCGTAAAAA
ATTCTGTAAGAATGCTGAAGAGTTTACAAAGAAATATGGGGAAAAGCGACCTGTGGACTAAAATCTGCCACGATTGGTTCCAGCAAGTGT
GAGCAGAGACCCCGTGCAGTGCATTCAGACACCCCGCAAAGCAGGACTCTGTGGAAATTGACACGTGCCACCGCCTGGCGTTCGCTTGTG
GCAGTTACTAACTTTCTACAGTTTTCTTAATCAAAAGTGGTCTAGGTAACCTGTAAAGAAAGGATTAAAAATTTAAGATGTTCTAGTTCT
GCTCTCTTTGTTTTAAAAATCACTGCTTCAATCTACTTCAAAAGAATGGTGTTTCTTTTCTTGTCCAATTTTATCCAAAATCTTCAAGTT
ACATTTAACCCATAAGGTTTAAAAAAAAGGAAAAAAAACGGTTGTGGTTCCCTTTCTTCCCTACCCTTGCCACTCCCACTTTCTGGCACC
GAGTTTATTTTTCACTTACTTACTTCCCCAGACCCCGGGCTCGCCTCCACAAAGGAGAAAAGACTGCCCTGGCGGTCCTGGTGGCTTTTC
TTAGCATGTGTGGCACTGTTGCCCAGTGTGGGAGTTGGTTTAAATTCTCCTGACTCCAGTTTATAACATCCTTTTAAAAAATTTAAAAAC
AAACAGCCACACCCCTCCTCCAGTCCTTCTCCTCAGTTCTTGTGTGAAACTCCAGCTGATGTTACCACAGTAACATCAGTTAATTGGGCA
AGCCCTGATGTCAGTGTGTGTAACTGACCTCTGGCCTGGCCTGCACAGAGAAGCCCTATAATCACAGGTCTGTGGTGGCCCCGAAATGGG
GGGCCTGCTAGTCAGGAGGATGCTGTGCACACTGTGTGTGATGAATCTCGCCAGAAAGGCTCCTGAGGTCCCAGGTTGGCACTTCTCCCT
GCAGCCATTGTAGAAGATCTGCTGGTCCTTGCAGGCAAAGCTACAGCCAGAATGTCCGTTTGAAACTCCTAGCTCATCTGTCACCGAGCT
TCATCCGAATGTGCCACGGAGCTTGCTCTCCACTTCCTCCGTGCAGTGGCCCTGCCACAGCCCTCCCTCGGCACACTTTGACCCTTTGTA
GGATTGGAATTAGCAGGACTCGGCTATTTAAAGCACCAGTCTGGGGTCGCCTGGGCCCCTGCTGACCCCCTCCTCCAGAGCAGCCAGCCC
AGCCCGGGAACAAGACGGACTTCCTCTCCCTTCGGACTCACAGCCTTTGCAGAGTCAAGCTCCACTTGAAGCTCACTCAGTAATATCCTT
TCAATGTGTTTTATATTGTTTTGACTGCCTTTTTTTGTAGAAATAAAAATTGACCTTAGAATTTATCGTCAGATAAACTTGTAAAGATTT
GAATATTAATGTCTTTTCAAGGCAAATGGGATTGTCCCCGCACTAGTAGAGAATCCATGTCGCTCTGACACCCCAAGGAAGCCGACGATC
CAAATGCCGTGTGTCACCAACCCCGCTTCTGCCACTGGCGGCTTCCCTTCTTGGCTCTTGGGGGGGACTAGATCCTGTGGAGAAGATGAC
TTAAACTTTGCTTTTTGTTTTAATTTTAATTCTATAACTTGAGATCTTTCCGGGGCCTACAGGCGTGTAAGACAGCTTGGTCTGGTCTGT
GCAGAAGTGGGGAGTGATGGGCAGGTTCGGCAGCCTAACATTGTTCAGGCGCATGGCCCCTGCGGTGTGTACACGAACTCGGCTTCTTTT
GTCCTAGGTACGCCAAGGGCAGGTTTCTGGAGACTCCCTTGTGCCCGGGATGGCAAGGGCACCGGGCTGGCGTTTCCACATCTGTCTTCA
TTAGCAGAAAAGTGATGATGGATTTTATTTCACTCACACTCCAGTTTGTAATAAAATGCCAAATTCTGTCAGCTATCCAAACAAGCCACC
ATTTGTTCTTGTTGCTTCTCTGGATCCAGAAATGTTGCCATTCTTGGAAACTGTCCCATTGCTTCGTATTTCTGCCAACGTAGCTCTGCC
TGCCTGTCAACCCCTCACTGCACTCTGCTCATCACGGGAGGATACCTGTGTGCCGGCAGCCCCTCAGGGACTCTCAGCCCTGGCACTGGC
ACCCCAGGGTTGGCCCCGTCAGCAGAGGCTTGGCTTTCGAGCCAGTGGGTGTCTCTCCTTTGGGCCTGGGCGGCTTGCTCCTGCCAGCCA
TGCCTTCAGGGTAGGCTCTGAGCAAGCTGGCGAACAGCCCTGGCTGCTCCAAAACCAAAAAGCTGGGTCCTCTGGAGGAGGGGCGAGCTG
TGGAGCAGCCACCCACTGCTGCCCCAAGCTCACTCAGGAATTCACACCCGCCTGGTTTCTTGAAGTGTGCTGGGTCCTTCCCTCTGCTCC

>In-frame_ENST00000397906_ENST00000342192_TCGA-36-1577_TTC28_chr22_29025539_-_UBE2L3_chr22_21947149_length(amino acids)=288AA_start in transcript=94_stop in transcript=960
MAGPLARGGRGPGPVGMEQSPPPAPEPTQGPTPARSRRRREPESPPASAPIPLFGADTIGQRSPDGPVLSKAEFVEKVRQSNQACHDGDF
HTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPY
DKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKF

--------------------------------------------------------------

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Fusion Gene PPI Analysis for TTC28-UBE2L3


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for TTC28-UBE2L3


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for TTC28-UBE2L3


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneTTC28C2931456Prostate cancer, familial1CTD_human
HgeneTTC28C4722327PROSTATE CANCER, HEREDITARY, 11CTD_human
TgeneUBE2L3C0024141Lupus Erythematosus, Systemic5ORPHANET
TgeneUBE2L3C0524909Hepatitis B, Chronic1CTD_human