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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:TUBD1-VMP1 (FusionGDB2 ID:94734) |
Fusion Gene Summary for TUBD1-VMP1 |
Fusion gene summary |
Fusion gene information | Fusion gene name: TUBD1-VMP1 | Fusion gene ID: 94734 | Hgene | Tgene | Gene symbol | TUBD1 | VMP1 | Gene ID | 51174 | 81671 |
Gene name | tubulin delta 1 | vacuole membrane protein 1 | |
Synonyms | TUBD | EPG3|TANGO5|TMEM49 | |
Cytomap | 17q23.1 | 17q23.1 | |
Type of gene | protein-coding | protein-coding | |
Description | tubulin delta chaindelta-tubulin | vacuole membrane protein 1ectopic P-granules autophagy protein 3 homologtransmembrane protein 49transport and golgi organization 5 homolog | |
Modification date | 20200313 | 20200327 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000346141, ENST00000325752, ENST00000340993, ENST00000394239, ENST00000592426, ENST00000376094, ENST00000539018, ENST00000591611, | ENST00000262291, ENST00000537567, ENST00000539763, ENST00000536180, ENST00000545362, ENST00000588617, | |
Fusion gene scores | * DoF score | 16 X 16 X 8=2048 | 42 X 34 X 19=27132 |
# samples | 22 | 151 | |
** MAII score | log2(22/2048*10)=-3.21864028647534 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(151/27132*10)=-4.16737494326024 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: TUBD1 [Title/Abstract] AND VMP1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | VMP1(57895134)-TUBD1(57955695), # samples:5 TUBD1(57941025)-VMP1(57816198), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. | TUBD1-VMP1 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. TUBD1-VMP1 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF. VMP1-TUBD1 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. VMP1-TUBD1 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene breakpoints across TUBD1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across VMP1 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | LUAD | TCGA-86-8074-01A | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
ChimerDB4 | LUAD | TCGA-05-4427-01A | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
ChimerDB4 | LUAD | TCGA-05-4427-01A | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
ChimerDB4 | LIHC | TCGA-DD-AADC-01A | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
Top |
Fusion Gene ORF analysis for TUBD1-VMP1 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000346141 | ENST00000262291 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
In-frame | ENST00000346141 | ENST00000537567 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
In-frame | ENST00000346141 | ENST00000539763 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
In-frame | ENST00000346141 | ENST00000536180 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
In-frame | ENST00000346141 | ENST00000545362 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
5CDS-intron | ENST00000346141 | ENST00000588617 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
In-frame | ENST00000325752 | ENST00000262291 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
In-frame | ENST00000325752 | ENST00000537567 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
In-frame | ENST00000325752 | ENST00000539763 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
In-frame | ENST00000325752 | ENST00000536180 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
In-frame | ENST00000325752 | ENST00000545362 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
5CDS-intron | ENST00000325752 | ENST00000588617 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
In-frame | ENST00000340993 | ENST00000262291 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
In-frame | ENST00000340993 | ENST00000537567 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
In-frame | ENST00000340993 | ENST00000539763 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
In-frame | ENST00000340993 | ENST00000536180 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
In-frame | ENST00000340993 | ENST00000545362 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
5CDS-intron | ENST00000340993 | ENST00000588617 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
In-frame | ENST00000394239 | ENST00000262291 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
In-frame | ENST00000394239 | ENST00000537567 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
In-frame | ENST00000394239 | ENST00000539763 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
In-frame | ENST00000394239 | ENST00000536180 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
In-frame | ENST00000394239 | ENST00000545362 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
5CDS-intron | ENST00000394239 | ENST00000588617 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
Frame-shift | ENST00000592426 | ENST00000262291 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
Frame-shift | ENST00000592426 | ENST00000537567 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
Frame-shift | ENST00000592426 | ENST00000539763 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
Frame-shift | ENST00000592426 | ENST00000536180 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
Frame-shift | ENST00000592426 | ENST00000545362 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
5CDS-intron | ENST00000592426 | ENST00000588617 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
Frame-shift | ENST00000376094 | ENST00000262291 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
Frame-shift | ENST00000376094 | ENST00000537567 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
Frame-shift | ENST00000376094 | ENST00000539763 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
Frame-shift | ENST00000376094 | ENST00000536180 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
Frame-shift | ENST00000376094 | ENST00000545362 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
5CDS-intron | ENST00000376094 | ENST00000588617 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
intron-3CDS | ENST00000539018 | ENST00000262291 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
intron-3CDS | ENST00000539018 | ENST00000537567 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
intron-3CDS | ENST00000539018 | ENST00000539763 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
intron-3CDS | ENST00000539018 | ENST00000536180 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
intron-3CDS | ENST00000539018 | ENST00000545362 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
intron-intron | ENST00000539018 | ENST00000588617 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
5UTR-3CDS | ENST00000591611 | ENST00000262291 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
5UTR-3CDS | ENST00000591611 | ENST00000537567 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
5UTR-3CDS | ENST00000591611 | ENST00000539763 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
5UTR-3CDS | ENST00000591611 | ENST00000536180 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
5UTR-3CDS | ENST00000591611 | ENST00000545362 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
5UTR-intron | ENST00000591611 | ENST00000588617 | TUBD1 | chr17 | 57968192 | - | VMP1 | chr17 | 57915656 | + |
In-frame | ENST00000346141 | ENST00000262291 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
5CDS-intron | ENST00000346141 | ENST00000537567 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
5CDS-5UTR | ENST00000346141 | ENST00000539763 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
5CDS-5UTR | ENST00000346141 | ENST00000536180 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
5CDS-5UTR | ENST00000346141 | ENST00000545362 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
5CDS-intron | ENST00000346141 | ENST00000588617 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
In-frame | ENST00000325752 | ENST00000262291 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
5CDS-intron | ENST00000325752 | ENST00000537567 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
5CDS-5UTR | ENST00000325752 | ENST00000539763 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
5CDS-5UTR | ENST00000325752 | ENST00000536180 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
5CDS-5UTR | ENST00000325752 | ENST00000545362 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
5CDS-intron | ENST00000325752 | ENST00000588617 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
In-frame | ENST00000340993 | ENST00000262291 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
5CDS-intron | ENST00000340993 | ENST00000537567 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
5CDS-5UTR | ENST00000340993 | ENST00000539763 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
5CDS-5UTR | ENST00000340993 | ENST00000536180 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
5CDS-5UTR | ENST00000340993 | ENST00000545362 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
5CDS-intron | ENST00000340993 | ENST00000588617 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
intron-3CDS | ENST00000394239 | ENST00000262291 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
intron-intron | ENST00000394239 | ENST00000537567 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
intron-5UTR | ENST00000394239 | ENST00000539763 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
intron-5UTR | ENST00000394239 | ENST00000536180 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
intron-5UTR | ENST00000394239 | ENST00000545362 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
intron-intron | ENST00000394239 | ENST00000588617 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
Frame-shift | ENST00000592426 | ENST00000262291 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
5CDS-intron | ENST00000592426 | ENST00000537567 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
5CDS-5UTR | ENST00000592426 | ENST00000539763 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
5CDS-5UTR | ENST00000592426 | ENST00000536180 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
5CDS-5UTR | ENST00000592426 | ENST00000545362 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
5CDS-intron | ENST00000592426 | ENST00000588617 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
Frame-shift | ENST00000376094 | ENST00000262291 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
5CDS-intron | ENST00000376094 | ENST00000537567 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
5CDS-5UTR | ENST00000376094 | ENST00000539763 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
5CDS-5UTR | ENST00000376094 | ENST00000536180 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
5CDS-5UTR | ENST00000376094 | ENST00000545362 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
5CDS-intron | ENST00000376094 | ENST00000588617 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
Frame-shift | ENST00000539018 | ENST00000262291 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
5CDS-intron | ENST00000539018 | ENST00000537567 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
5CDS-5UTR | ENST00000539018 | ENST00000539763 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
5CDS-5UTR | ENST00000539018 | ENST00000536180 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
5CDS-5UTR | ENST00000539018 | ENST00000545362 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
5CDS-intron | ENST00000539018 | ENST00000588617 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
intron-3CDS | ENST00000591611 | ENST00000262291 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
intron-intron | ENST00000591611 | ENST00000537567 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
intron-5UTR | ENST00000591611 | ENST00000539763 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
intron-5UTR | ENST00000591611 | ENST00000536180 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
intron-5UTR | ENST00000591611 | ENST00000545362 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
intron-intron | ENST00000591611 | ENST00000588617 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + |
intron-3CDS | ENST00000346141 | ENST00000262291 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
intron-3CDS | ENST00000346141 | ENST00000537567 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
intron-3CDS | ENST00000346141 | ENST00000539763 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
intron-3CDS | ENST00000346141 | ENST00000536180 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
intron-3CDS | ENST00000346141 | ENST00000545362 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
intron-intron | ENST00000346141 | ENST00000588617 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
In-frame | ENST00000325752 | ENST00000262291 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
In-frame | ENST00000325752 | ENST00000537567 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
In-frame | ENST00000325752 | ENST00000539763 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
In-frame | ENST00000325752 | ENST00000536180 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
In-frame | ENST00000325752 | ENST00000545362 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
5CDS-intron | ENST00000325752 | ENST00000588617 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
In-frame | ENST00000340993 | ENST00000262291 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
In-frame | ENST00000340993 | ENST00000537567 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
In-frame | ENST00000340993 | ENST00000539763 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
In-frame | ENST00000340993 | ENST00000536180 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
In-frame | ENST00000340993 | ENST00000545362 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
5CDS-intron | ENST00000340993 | ENST00000588617 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
In-frame | ENST00000394239 | ENST00000262291 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
In-frame | ENST00000394239 | ENST00000537567 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
In-frame | ENST00000394239 | ENST00000539763 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
In-frame | ENST00000394239 | ENST00000536180 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
In-frame | ENST00000394239 | ENST00000545362 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
5CDS-intron | ENST00000394239 | ENST00000588617 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
Frame-shift | ENST00000592426 | ENST00000262291 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
Frame-shift | ENST00000592426 | ENST00000537567 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
Frame-shift | ENST00000592426 | ENST00000539763 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
Frame-shift | ENST00000592426 | ENST00000536180 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
Frame-shift | ENST00000592426 | ENST00000545362 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
5CDS-intron | ENST00000592426 | ENST00000588617 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
Frame-shift | ENST00000376094 | ENST00000262291 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
Frame-shift | ENST00000376094 | ENST00000537567 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
Frame-shift | ENST00000376094 | ENST00000539763 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
Frame-shift | ENST00000376094 | ENST00000536180 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
Frame-shift | ENST00000376094 | ENST00000545362 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
5CDS-intron | ENST00000376094 | ENST00000588617 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
intron-3CDS | ENST00000539018 | ENST00000262291 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
intron-3CDS | ENST00000539018 | ENST00000537567 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
intron-3CDS | ENST00000539018 | ENST00000539763 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
intron-3CDS | ENST00000539018 | ENST00000536180 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
intron-3CDS | ENST00000539018 | ENST00000545362 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
intron-intron | ENST00000539018 | ENST00000588617 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
5UTR-3CDS | ENST00000591611 | ENST00000262291 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
5UTR-3CDS | ENST00000591611 | ENST00000537567 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
5UTR-3CDS | ENST00000591611 | ENST00000539763 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
5UTR-3CDS | ENST00000591611 | ENST00000536180 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
5UTR-3CDS | ENST00000591611 | ENST00000545362 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
5UTR-intron | ENST00000591611 | ENST00000588617 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000346141 | TUBD1 | chr17 | 57941025 | - | ENST00000262291 | VMP1 | chr17 | 57816198 | + | 2654 | 555 | 534 | 1472 | 312 |
ENST00000325752 | TUBD1 | chr17 | 57941025 | - | ENST00000262291 | VMP1 | chr17 | 57816198 | + | 3636 | 1537 | 233 | 1552 | 439 |
ENST00000340993 | TUBD1 | chr17 | 57941025 | - | ENST00000262291 | VMP1 | chr17 | 57816198 | + | 3456 | 1357 | 218 | 1372 | 384 |
ENST00000325752 | TUBD1 | chr17 | 57963444 | - | ENST00000262291 | VMP1 | chr17 | 57851115 | + | 2418 | 598 | 532 | 1236 | 234 |
ENST00000325752 | TUBD1 | chr17 | 57963444 | - | ENST00000537567 | VMP1 | chr17 | 57851115 | + | 1497 | 598 | 532 | 1236 | 234 |
ENST00000325752 | TUBD1 | chr17 | 57963444 | - | ENST00000539763 | VMP1 | chr17 | 57851115 | + | 1457 | 598 | 532 | 1236 | 234 |
ENST00000325752 | TUBD1 | chr17 | 57963444 | - | ENST00000536180 | VMP1 | chr17 | 57851115 | + | 1329 | 598 | 532 | 1236 | 234 |
ENST00000325752 | TUBD1 | chr17 | 57963444 | - | ENST00000545362 | VMP1 | chr17 | 57851115 | + | 1489 | 598 | 532 | 1236 | 234 |
ENST00000340993 | TUBD1 | chr17 | 57963444 | - | ENST00000262291 | VMP1 | chr17 | 57851115 | + | 2403 | 583 | 517 | 1221 | 234 |
ENST00000340993 | TUBD1 | chr17 | 57963444 | - | ENST00000537567 | VMP1 | chr17 | 57851115 | + | 1482 | 583 | 517 | 1221 | 234 |
ENST00000340993 | TUBD1 | chr17 | 57963444 | - | ENST00000539763 | VMP1 | chr17 | 57851115 | + | 1442 | 583 | 517 | 1221 | 234 |
ENST00000340993 | TUBD1 | chr17 | 57963444 | - | ENST00000536180 | VMP1 | chr17 | 57851115 | + | 1314 | 583 | 517 | 1221 | 234 |
ENST00000340993 | TUBD1 | chr17 | 57963444 | - | ENST00000545362 | VMP1 | chr17 | 57851115 | + | 1474 | 583 | 517 | 1221 | 234 |
ENST00000394239 | TUBD1 | chr17 | 57963444 | - | ENST00000262291 | VMP1 | chr17 | 57851115 | + | 2341 | 521 | 455 | 1159 | 234 |
ENST00000394239 | TUBD1 | chr17 | 57963444 | - | ENST00000537567 | VMP1 | chr17 | 57851115 | + | 1420 | 521 | 455 | 1159 | 234 |
ENST00000394239 | TUBD1 | chr17 | 57963444 | - | ENST00000539763 | VMP1 | chr17 | 57851115 | + | 1380 | 521 | 455 | 1159 | 234 |
ENST00000394239 | TUBD1 | chr17 | 57963444 | - | ENST00000536180 | VMP1 | chr17 | 57851115 | + | 1252 | 521 | 455 | 1159 | 234 |
ENST00000394239 | TUBD1 | chr17 | 57963444 | - | ENST00000545362 | VMP1 | chr17 | 57851115 | + | 1412 | 521 | 455 | 1159 | 234 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000346141 | ENST00000262291 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + | 0.000213675 | 0.9997863 |
ENST00000325752 | ENST00000262291 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + | 0.000309168 | 0.9996909 |
ENST00000340993 | ENST00000262291 | TUBD1 | chr17 | 57941025 | - | VMP1 | chr17 | 57816198 | + | 0.000198463 | 0.9998016 |
ENST00000325752 | ENST00000262291 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + | 0.001449741 | 0.99855024 |
ENST00000325752 | ENST00000537567 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + | 0.003203942 | 0.9967961 |
ENST00000325752 | ENST00000539763 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + | 0.003370197 | 0.9966298 |
ENST00000325752 | ENST00000536180 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + | 0.004227382 | 0.99577266 |
ENST00000325752 | ENST00000545362 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + | 0.003342263 | 0.9966577 |
ENST00000340993 | ENST00000262291 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + | 0.001454504 | 0.9985455 |
ENST00000340993 | ENST00000537567 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + | 0.00298838 | 0.99701166 |
ENST00000340993 | ENST00000539763 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + | 0.003066343 | 0.9969337 |
ENST00000340993 | ENST00000536180 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + | 0.003966469 | 0.9960335 |
ENST00000340993 | ENST00000545362 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + | 0.003064998 | 0.996935 |
ENST00000394239 | ENST00000262291 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + | 0.00175798 | 0.998242 |
ENST00000394239 | ENST00000537567 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + | 0.003502992 | 0.996497 |
ENST00000394239 | ENST00000539763 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + | 0.00342436 | 0.99657565 |
ENST00000394239 | ENST00000536180 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + | 0.00440832 | 0.9955917 |
ENST00000394239 | ENST00000545362 | TUBD1 | chr17 | 57963444 | - | VMP1 | chr17 | 57851115 | + | 0.00360374 | 0.99639624 |
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Fusion Genomic Features for TUBD1-VMP1 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
TUBD1 | chr17 | 57941024 | - | VMP1 | chr17 | 57816197 | + | 1.89E-05 | 0.99998105 |
TUBD1 | chr17 | 57968191 | - | VMP1 | chr17 | 57915655 | + | 1.17E-09 | 1 |
TUBD1 | chr17 | 57963443 | - | VMP1 | chr17 | 57851114 | + | 3.07E-08 | 1 |
TUBD1 | chr17 | 57941024 | - | VMP1 | chr17 | 57816197 | + | 1.89E-05 | 0.99998105 |
TUBD1 | chr17 | 57968191 | - | VMP1 | chr17 | 57915655 | + | 1.17E-09 | 1 |
TUBD1 | chr17 | 57963443 | - | VMP1 | chr17 | 57851114 | + | 3.07E-08 | 1 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for TUBD1-VMP1 |
Go to FGviewer for the breakpoints of chr17:57968192-chr17:57915656 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | . |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | TUBD1 | chr17:57941025 | chr17:57816198 | ENST00000325752 | - | 8 | 9 | 143_149 | 419.6666666666667 | 454.0 | Nucleotide binding | GTP |
Hgene | TUBD1 | chr17:57941025 | chr17:57816198 | ENST00000340993 | - | 7 | 8 | 143_149 | 364.6666666666667 | 399.0 | Nucleotide binding | GTP |
Hgene | TUBD1 | chr17:57941025 | chr17:57816198 | ENST00000346141 | - | 4 | 5 | 143_149 | 165.66666666666666 | 200.0 | Nucleotide binding | GTP |
Hgene | TUBD1 | chr17:57941025 | chr17:57816198 | ENST00000376094 | - | 5 | 6 | 143_149 | 317.6666666666667 | 352.0 | Nucleotide binding | GTP |
Hgene | TUBD1 | chr17:57941025 | chr17:57816198 | ENST00000539018 | - | 5 | 6 | 143_149 | 203.66666666666666 | 238.0 | Nucleotide binding | GTP |
Hgene | TUBD1 | chr17:57941025 | chr17:57816198 | ENST00000592426 | - | 7 | 8 | 143_149 | 419.6666666666667 | 454.0 | Nucleotide binding | GTP |
Tgene | VMP1 | chr17:57941025 | chr17:57816198 | ENST00000262291 | 3 | 12 | 173_316 | 101.0 | 407.0 | Region | VTT domain | |
Tgene | VMP1 | chr17:57941025 | chr17:57816198 | ENST00000262291 | 3 | 12 | 131_250 | 101.0 | 407.0 | Topological domain | Extracellular | |
Tgene | VMP1 | chr17:57941025 | chr17:57816198 | ENST00000262291 | 3 | 12 | 272_273 | 101.0 | 407.0 | Topological domain | Cytoplasmic | |
Tgene | VMP1 | chr17:57941025 | chr17:57816198 | ENST00000262291 | 3 | 12 | 295_305 | 101.0 | 407.0 | Topological domain | Extracellular | |
Tgene | VMP1 | chr17:57941025 | chr17:57816198 | ENST00000262291 | 3 | 12 | 327_363 | 101.0 | 407.0 | Topological domain | Cytoplasmic | |
Tgene | VMP1 | chr17:57941025 | chr17:57816198 | ENST00000262291 | 3 | 12 | 385_406 | 101.0 | 407.0 | Topological domain | Extracellular | |
Tgene | VMP1 | chr17:57941025 | chr17:57816198 | ENST00000262291 | 3 | 12 | 99_109 | 101.0 | 407.0 | Topological domain | Cytoplasmic | |
Tgene | VMP1 | chr17:57963444 | chr17:57851115 | ENST00000262291 | 5 | 12 | 272_273 | 194.0 | 407.0 | Topological domain | Cytoplasmic | |
Tgene | VMP1 | chr17:57963444 | chr17:57851115 | ENST00000262291 | 5 | 12 | 295_305 | 194.0 | 407.0 | Topological domain | Extracellular | |
Tgene | VMP1 | chr17:57963444 | chr17:57851115 | ENST00000262291 | 5 | 12 | 327_363 | 194.0 | 407.0 | Topological domain | Cytoplasmic | |
Tgene | VMP1 | chr17:57963444 | chr17:57851115 | ENST00000262291 | 5 | 12 | 385_406 | 194.0 | 407.0 | Topological domain | Extracellular | |
Tgene | VMP1 | chr17:57968192 | chr17:57915656 | ENST00000262291 | 9 | 12 | 327_363 | 324.6666666666667 | 407.0 | Topological domain | Cytoplasmic | |
Tgene | VMP1 | chr17:57968192 | chr17:57915656 | ENST00000262291 | 9 | 12 | 385_406 | 324.6666666666667 | 407.0 | Topological domain | Extracellular | |
Tgene | VMP1 | chr17:57941025 | chr17:57816198 | ENST00000262291 | 3 | 12 | 110_130 | 101.0 | 407.0 | Transmembrane | Helical | |
Tgene | VMP1 | chr17:57941025 | chr17:57816198 | ENST00000262291 | 3 | 12 | 251_271 | 101.0 | 407.0 | Transmembrane | Helical | |
Tgene | VMP1 | chr17:57941025 | chr17:57816198 | ENST00000262291 | 3 | 12 | 274_294 | 101.0 | 407.0 | Transmembrane | Helical | |
Tgene | VMP1 | chr17:57941025 | chr17:57816198 | ENST00000262291 | 3 | 12 | 306_326 | 101.0 | 407.0 | Transmembrane | Helical | |
Tgene | VMP1 | chr17:57941025 | chr17:57816198 | ENST00000262291 | 3 | 12 | 364_384 | 101.0 | 407.0 | Transmembrane | Helical | |
Tgene | VMP1 | chr17:57963444 | chr17:57851115 | ENST00000262291 | 5 | 12 | 251_271 | 194.0 | 407.0 | Transmembrane | Helical | |
Tgene | VMP1 | chr17:57963444 | chr17:57851115 | ENST00000262291 | 5 | 12 | 274_294 | 194.0 | 407.0 | Transmembrane | Helical | |
Tgene | VMP1 | chr17:57963444 | chr17:57851115 | ENST00000262291 | 5 | 12 | 306_326 | 194.0 | 407.0 | Transmembrane | Helical | |
Tgene | VMP1 | chr17:57963444 | chr17:57851115 | ENST00000262291 | 5 | 12 | 364_384 | 194.0 | 407.0 | Transmembrane | Helical | |
Tgene | VMP1 | chr17:57968192 | chr17:57915656 | ENST00000262291 | 9 | 12 | 364_384 | 324.6666666666667 | 407.0 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | TUBD1 | chr17:57941025 | chr17:57816198 | ENST00000394239 | - | 1 | 8 | 143_149 | 0 | 397.0 | Nucleotide binding | GTP |
Hgene | TUBD1 | chr17:57963444 | chr17:57851115 | ENST00000325752 | - | 3 | 9 | 143_149 | 106.66666666666667 | 454.0 | Nucleotide binding | GTP |
Hgene | TUBD1 | chr17:57963444 | chr17:57851115 | ENST00000340993 | - | 3 | 8 | 143_149 | 106.66666666666667 | 399.0 | Nucleotide binding | GTP |
Hgene | TUBD1 | chr17:57963444 | chr17:57851115 | ENST00000346141 | - | 1 | 5 | 143_149 | 0 | 200.0 | Nucleotide binding | GTP |
Hgene | TUBD1 | chr17:57963444 | chr17:57851115 | ENST00000376094 | - | 2 | 6 | 143_149 | 106.66666666666667 | 352.0 | Nucleotide binding | GTP |
Hgene | TUBD1 | chr17:57963444 | chr17:57851115 | ENST00000394239 | - | 3 | 8 | 143_149 | 106.66666666666667 | 397.0 | Nucleotide binding | GTP |
Hgene | TUBD1 | chr17:57963444 | chr17:57851115 | ENST00000539018 | - | 1 | 6 | 143_149 | 0 | 238.0 | Nucleotide binding | GTP |
Hgene | TUBD1 | chr17:57963444 | chr17:57851115 | ENST00000592426 | - | 2 | 8 | 143_149 | 106.66666666666667 | 454.0 | Nucleotide binding | GTP |
Hgene | TUBD1 | chr17:57968192 | chr17:57915656 | ENST00000325752 | - | 2 | 9 | 143_149 | 57.333333333333336 | 454.0 | Nucleotide binding | GTP |
Hgene | TUBD1 | chr17:57968192 | chr17:57915656 | ENST00000340993 | - | 2 | 8 | 143_149 | 57.333333333333336 | 399.0 | Nucleotide binding | GTP |
Hgene | TUBD1 | chr17:57968192 | chr17:57915656 | ENST00000346141 | - | 2 | 5 | 143_149 | 57.333333333333336 | 200.0 | Nucleotide binding | GTP |
Hgene | TUBD1 | chr17:57968192 | chr17:57915656 | ENST00000376094 | - | 1 | 6 | 143_149 | 57.333333333333336 | 352.0 | Nucleotide binding | GTP |
Hgene | TUBD1 | chr17:57968192 | chr17:57915656 | ENST00000394239 | - | 2 | 8 | 143_149 | 57.333333333333336 | 397.0 | Nucleotide binding | GTP |
Hgene | TUBD1 | chr17:57968192 | chr17:57915656 | ENST00000539018 | - | 1 | 6 | 143_149 | 0 | 238.0 | Nucleotide binding | GTP |
Hgene | TUBD1 | chr17:57968192 | chr17:57915656 | ENST00000592426 | - | 1 | 8 | 143_149 | 57.333333333333336 | 454.0 | Nucleotide binding | GTP |
Tgene | VMP1 | chr17:57963444 | chr17:57851115 | ENST00000262291 | 5 | 12 | 173_316 | 194.0 | 407.0 | Region | VTT domain | |
Tgene | VMP1 | chr17:57968192 | chr17:57915656 | ENST00000262291 | 9 | 12 | 173_316 | 324.6666666666667 | 407.0 | Region | VTT domain | |
Tgene | VMP1 | chr17:57941025 | chr17:57816198 | ENST00000262291 | 3 | 12 | 2_43 | 101.0 | 407.0 | Topological domain | Cytoplasmic | |
Tgene | VMP1 | chr17:57941025 | chr17:57816198 | ENST00000262291 | 3 | 12 | 65_77 | 101.0 | 407.0 | Topological domain | Extracellular | |
Tgene | VMP1 | chr17:57963444 | chr17:57851115 | ENST00000262291 | 5 | 12 | 131_250 | 194.0 | 407.0 | Topological domain | Extracellular | |
Tgene | VMP1 | chr17:57963444 | chr17:57851115 | ENST00000262291 | 5 | 12 | 2_43 | 194.0 | 407.0 | Topological domain | Cytoplasmic | |
Tgene | VMP1 | chr17:57963444 | chr17:57851115 | ENST00000262291 | 5 | 12 | 65_77 | 194.0 | 407.0 | Topological domain | Extracellular | |
Tgene | VMP1 | chr17:57963444 | chr17:57851115 | ENST00000262291 | 5 | 12 | 99_109 | 194.0 | 407.0 | Topological domain | Cytoplasmic | |
Tgene | VMP1 | chr17:57968192 | chr17:57915656 | ENST00000262291 | 9 | 12 | 131_250 | 324.6666666666667 | 407.0 | Topological domain | Extracellular | |
Tgene | VMP1 | chr17:57968192 | chr17:57915656 | ENST00000262291 | 9 | 12 | 272_273 | 324.6666666666667 | 407.0 | Topological domain | Cytoplasmic | |
Tgene | VMP1 | chr17:57968192 | chr17:57915656 | ENST00000262291 | 9 | 12 | 295_305 | 324.6666666666667 | 407.0 | Topological domain | Extracellular | |
Tgene | VMP1 | chr17:57968192 | chr17:57915656 | ENST00000262291 | 9 | 12 | 2_43 | 324.6666666666667 | 407.0 | Topological domain | Cytoplasmic | |
Tgene | VMP1 | chr17:57968192 | chr17:57915656 | ENST00000262291 | 9 | 12 | 65_77 | 324.6666666666667 | 407.0 | Topological domain | Extracellular | |
Tgene | VMP1 | chr17:57968192 | chr17:57915656 | ENST00000262291 | 9 | 12 | 99_109 | 324.6666666666667 | 407.0 | Topological domain | Cytoplasmic | |
Tgene | VMP1 | chr17:57941025 | chr17:57816198 | ENST00000262291 | 3 | 12 | 44_64 | 101.0 | 407.0 | Transmembrane | Helical | |
Tgene | VMP1 | chr17:57941025 | chr17:57816198 | ENST00000262291 | 3 | 12 | 78_98 | 101.0 | 407.0 | Transmembrane | Helical | |
Tgene | VMP1 | chr17:57963444 | chr17:57851115 | ENST00000262291 | 5 | 12 | 110_130 | 194.0 | 407.0 | Transmembrane | Helical | |
Tgene | VMP1 | chr17:57963444 | chr17:57851115 | ENST00000262291 | 5 | 12 | 44_64 | 194.0 | 407.0 | Transmembrane | Helical | |
Tgene | VMP1 | chr17:57963444 | chr17:57851115 | ENST00000262291 | 5 | 12 | 78_98 | 194.0 | 407.0 | Transmembrane | Helical | |
Tgene | VMP1 | chr17:57968192 | chr17:57915656 | ENST00000262291 | 9 | 12 | 110_130 | 324.6666666666667 | 407.0 | Transmembrane | Helical | |
Tgene | VMP1 | chr17:57968192 | chr17:57915656 | ENST00000262291 | 9 | 12 | 251_271 | 324.6666666666667 | 407.0 | Transmembrane | Helical | |
Tgene | VMP1 | chr17:57968192 | chr17:57915656 | ENST00000262291 | 9 | 12 | 274_294 | 324.6666666666667 | 407.0 | Transmembrane | Helical | |
Tgene | VMP1 | chr17:57968192 | chr17:57915656 | ENST00000262291 | 9 | 12 | 306_326 | 324.6666666666667 | 407.0 | Transmembrane | Helical | |
Tgene | VMP1 | chr17:57968192 | chr17:57915656 | ENST00000262291 | 9 | 12 | 44_64 | 324.6666666666667 | 407.0 | Transmembrane | Helical | |
Tgene | VMP1 | chr17:57968192 | chr17:57915656 | ENST00000262291 | 9 | 12 | 78_98 | 324.6666666666667 | 407.0 | Transmembrane | Helical |
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Fusion Gene Sequence for TUBD1-VMP1 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000346141_ENST00000262291_TCGA-05-4427-01A_TUBD1_chr17_57941025_-_VMP1_chr17_57816198_length(transcript)=2654nt_BP=555nt CGCTGGTCGGCGTCTGGCGGTTGTTTTTAGAGGTAATACACCTAGTTTGTGGCTCAGCATGTCAATTGTAACAGTGCAACTTGGTCAGTG TGGCAATCAGATTGGTTTTGAAGTTTTTGATGCTTTGCTTAGTGACTCACACAGTTCCCAGGGACTCTGCTCTATGAGAGAGAATGAGGC ATATCAAGCATCTTGCAAAGAAAGATTCTTCAGTGAGGAGGAGAATGGAGGTATTGATAGGCATGTATGGCCTCCTTTATCAGGACTTCC TCCTCTTAGTAAAATGTCTCTCAACAAGGACCTGCATTTTAACACTTCCATTGCTAACTTGGTCATTCTTCGTGGGAAAGATGTGCAAAG TGCAGATGTGGAGGGATTTAAAGATCCAGCTCTGTATACTTCCTGGTTGAAGCCTGTTAATGCTTTCAACGTGTGGAAAACCCAGCGGGC CTTTAGCAAATATGAGAAGTCTGCAGTGTTGGTCAGCAACAGCCAGTTCTTAGTAAAACCACTTGATATGATTGTTGGGAAGGCATGGAA TATGTTTGCTTCAAATATGTGCAACGTATAGAGAAACAGTTTCTTTTGTATGCCTACTGGATAGGCTTAGGAATTTTGTCTTCTGTTGGG CTTGGAACAGGGCTGCACACCTTTCTGCTTTATCTGGGTCCACATATAGCCTCAGTTACATTAGCTGCTTATGAATGCAATTCAGTTAAT TTTCCCGAACCACCCTATCCTGATCAGATTATTTGTCCAGATGAAGAGGGCACTGAAGGAACCATTTCTTTGTGGAGTATCATCTCAAAA GTTAGGATTGAAGCCTGCATGTGGGGTATCGGTACAGCAATCGGAGAGCTGCCTCCATATTTCATGGCCAGAGCAGCTCGCCTCTCAGGT GCTGAACCAGATGATGAAGAGTATCAGGAATTTGAAGAGATGCTGGAACATGCAGAGTCTGCACAAGACTTTGCCTCCCGGGCCAAACTG GCAGTTCAAAAACTAGTACAGAAAGTTGGATTTTTTGGAATTTTGGCCTGTGCTTCAATTCCAAATCCTTTATTTGATCTGGCTGGAATA ACGTGTGGACACTTTCTGGTACCTTTTTGGACCTTCTTTGGTGCAACCCTAATTGGAAAAGCAATAATAAAAATGCATATCCAGAAAATT TTTGTTATAATAACATTCAGCAAGCACATAGTGGAGCAAATGGTGGCTTTCATTGGTGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAG CCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAGGGAGAAAACTGGTTGTCCTGG ATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAG CAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAGTTTTAAACTGCAGAAATTGGAGTGGATGGGTTCTGCCTTAAATTGGG AGGACTCCAAGCCGGGAAGGAAAATTCCCTTTTCCAACCTGTATCAATTTTTACAACTTTTTTCCTGAAAGCAGTTTAGTCCATACTTTG CACTGACATACTTTTTCCTTCTGTGCTAAGGTAAGGTATCCACCCTCGATGCAATCCACCTTGTGTTTTCTTAGGGTGGAATGTGATGTT CAGCAGCAAACTTGCAACAGACTGGCCTTCTGTTTGTTACTTTCAAAAGGCCCACATGATACAATTAGAGAATTCCCACCGCACAAAAAA AGTTCCTAAGTATGTTAAATATGTCAAGCTTTTTAGGCTTGTCACAAATGATTGCTTTGTTTTCCTAAGTCATCAAAATGTATATAAATT ATCTAGATTGGATAACAGTCTTGCATGTTTATCATGTTACAATTTAATATTCCATCCTGCCCAACCCTTCCTCTCCCATCCTCAAAAAAG GGCCATTTTATGATGCATTGCACACCCTCTGGGGAAATTGATCTTTAAATTTTGAGACAGTATAAGGAAAATCTGGTTGGTGTCTTACAA GTGAGCTGACACCATTTTTTATTCTGTGTATTTAGAATGAAGTCTTGAAAAAAACTTTATAAAGACATCTTTAATCATTCCAAAATTGTG TCCGTTTTCTTGAGCGTTTTGATTTTTTACTTTTAGCTTATACCAGCTGAATGGCAGCCTTGCCTAATCCACCTACAACAAGAATTTCTT AAGCTTTCTTTTATTTGCATGAGAGAGCCACTACCAAGGCATGTTTTGTTATGCTGAAACTGGGCTGCTGCATACTGCTAAATGGCACCT CTGGGATTGGCCTACCTGGGGATTTCTTGGTTTGTGAAAACAGGAGAGGAGAAATATCTCATACAAGTGAAAGGATACTGGAGAGAGAAA TTACCCATTTCTAAAAAAAAACCACACTCTGTCGTATCTGTGTTAATGTTTTCTAGCATGTACTCTGGTTTCAACAGACACAAATTTATA TGTTAACCCAGTTTTCTTGCCGTTCTGTAAGTGTTTTATTCTTAGTGTGATTTTTTTCCATTGGGATGTTTTTGATTGAACTTGTTCATT >In-frame_ENST00000346141_ENST00000262291_TCGA-05-4427-01A_TUBD1_chr17_57941025_-_VMP1_chr17_57816198_length(amino acids)=312AA_start in transcript=534_stop in transcript=1472 MEYVCFKYVQRIEKQFLLYAYWIGLGILSSVGLGTGLHTFLLYLGPHIASVTLAAYECNSVNFPEPPYPDQIICPDEEGTEGTISLWSII SKVRIEACMWGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLEHAESAQDFASRAKLAVQKLVQKVGFFGILACASIPNPLFDLA GITCGHFLVPFWTFFGATLIGKAIIKMHIQKIFVIITFSKHIVEQMVAFIGAVPGIGPSLQKPFQEYLEAQRQKLHHKSEMGTPQGENWL -------------------------------------------------------------- >In-frame_ENST00000325752_ENST00000262291_TCGA-05-4427-01A_TUBD1_chr17_57941025_-_VMP1_chr17_57816198_length(transcript)=3636nt_BP=1537nt AGCTGGAGCGTTCGGTGGACAGTGAGCATGCGTACCATATCTGAAGTTCGTAAATTGAAATTGAACATGCGTAATTAATCTTTCTGAATA GGAAAAAATATATACACAACAAAACTCTCCGTTTATGGAACATGCGCATTTGTTCTCAGTAAGTTTTTCGTTTTGAAAGTGAGCATGCGC ATGGTGAGTAGGTTGGTCCGAAGTTTGAACCGGACAGAAGCGCTGGTCGGCGTCTGGCGGTTGTTTTTAGAGGTAATACACCTAGTTTGT GGCTCAGCATGTCAATTGTAACAGTGCAACTTGGTCAGTGTGGCAATCAGATTGGTTTTGAAGTTTTTGATGCTTTGCTTAGTGACTCAC ACAGTTCCCAGGGACTCTGCTCTATGAGAGAGAATGAGGCATATCAAGCATCTTGCAAAGAAAGATTCTTCAGTGAGGAGGAGAATGGAG TTCCAATTGCCCGGGCTGTTCTTGTTGACATGGAACCCAAAGTTATCAATCAAATGCTGTCAAAGGCTGCCCAGTCTGGCCAATGGAAAT ATGGTCAACATGCATGCTTCTGTCAAAAACAAGGTTCTGGAAACAACTGGGCATATGGTTACTCTGTTCATGGACCCAGGCATGAAGAAT CTATAATGAACATAATCCGGAAGGAAGTGGAGAAATGTGACTCTTTCAGTGGTTTTTTCATCATAATGAGTATGGCTGGGGGCACAGGAT CAGGATTAGGAGCTTTCGTTACACAGAATTTAGAAGATCAGTACTCAAACTCATTGAAAATGAATCAGATTATTTGGCCTTATGGAACTG GTGAGGTTATTGTTCAAAACTACAACTCCATTTTGACACTTTCTCACTTGTACCGATCTTCAGACGCCCTCCTTCTTCATGAGAATGATG CCATCCATAAGATCTGTGCAAAACTGATGAATATCAAGCAGATCTCCTTTAGTGATATCAATCAAGTCCTCGCACATCAGCTGGGAAGTG TGTTCCAGCCTACTTATTCTGCAGAAAGCTCATTTCACTACAGACGAAATCCACTAGGAGACTTAATGGAGCATTTAGTTCCCCATCCTG AATTCAAGATGCTGAGTGTTCGTAACATTCCTCACATGTCTGAGAATTCATTGGCATACACCACATTTACTTGGGCTGGCCTCCTCAAGC ATTTGAGACAGATGCTCATTTCTAATGCAAAGATGGAAGAAGGTATTGATAGGCATGTATGGCCTCCTTTATCAGGACTTCCTCCTCTTA GTAAAATGTCTCTCAACAAGGACCTGCATTTTAACACTTCCATTGCTAACTTGGTCATTCTTCGTGGGAAAGATGTGCAAAGTGCAGATG TGGAGGGATTTAAAGATCCAGCTCTGTATACTTCCTGGTTGAAGCCTGTTAATGCTTTCAACGTGTGGAAAACCCAGCGGGCCTTTAGCA AATATGAGAAGTCTGCAGTGTTGGTCAGCAACAGCCAGTTCTTAGTAAAACCACTTGATATGATTGTTGGGAAGGCATGGAATATGTTTG CTTCAAATATGTGCAACGTATAGAGAAACAGTTTCTTTTGTATGCCTACTGGATAGGCTTAGGAATTTTGTCTTCTGTTGGGCTTGGAAC AGGGCTGCACACCTTTCTGCTTTATCTGGGTCCACATATAGCCTCAGTTACATTAGCTGCTTATGAATGCAATTCAGTTAATTTTCCCGA ACCACCCTATCCTGATCAGATTATTTGTCCAGATGAAGAGGGCACTGAAGGAACCATTTCTTTGTGGAGTATCATCTCAAAAGTTAGGAT TGAAGCCTGCATGTGGGGTATCGGTACAGCAATCGGAGAGCTGCCTCCATATTTCATGGCCAGAGCAGCTCGCCTCTCAGGTGCTGAACC AGATGATGAAGAGTATCAGGAATTTGAAGAGATGCTGGAACATGCAGAGTCTGCACAAGACTTTGCCTCCCGGGCCAAACTGGCAGTTCA AAAACTAGTACAGAAAGTTGGATTTTTTGGAATTTTGGCCTGTGCTTCAATTCCAAATCCTTTATTTGATCTGGCTGGAATAACGTGTGG ACACTTTCTGGTACCTTTTTGGACCTTCTTTGGTGCAACCCTAATTGGAAAAGCAATAATAAAAATGCATATCCAGAAAATTTTTGTTAT AATAACATTCAGCAAGCACATAGTGGAGCAAATGGTGGCTTTCATTGGTGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCA GGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAGGGAGAAAACTGGTTGTCCTGGATGTTTGA AAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTT GAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAGTTTTAAACTGCAGAAATTGGAGTGGATGGGTTCTGCCTTAAATTGGGAGGACTCC AAGCCGGGAAGGAAAATTCCCTTTTCCAACCTGTATCAATTTTTACAACTTTTTTCCTGAAAGCAGTTTAGTCCATACTTTGCACTGACA TACTTTTTCCTTCTGTGCTAAGGTAAGGTATCCACCCTCGATGCAATCCACCTTGTGTTTTCTTAGGGTGGAATGTGATGTTCAGCAGCA AACTTGCAACAGACTGGCCTTCTGTTTGTTACTTTCAAAAGGCCCACATGATACAATTAGAGAATTCCCACCGCACAAAAAAAGTTCCTA AGTATGTTAAATATGTCAAGCTTTTTAGGCTTGTCACAAATGATTGCTTTGTTTTCCTAAGTCATCAAAATGTATATAAATTATCTAGAT TGGATAACAGTCTTGCATGTTTATCATGTTACAATTTAATATTCCATCCTGCCCAACCCTTCCTCTCCCATCCTCAAAAAAGGGCCATTT TATGATGCATTGCACACCCTCTGGGGAAATTGATCTTTAAATTTTGAGACAGTATAAGGAAAATCTGGTTGGTGTCTTACAAGTGAGCTG ACACCATTTTTTATTCTGTGTATTTAGAATGAAGTCTTGAAAAAAACTTTATAAAGACATCTTTAATCATTCCAAAATTGTGTCCGTTTT CTTGAGCGTTTTGATTTTTTACTTTTAGCTTATACCAGCTGAATGGCAGCCTTGCCTAATCCACCTACAACAAGAATTTCTTAAGCTTTC TTTTATTTGCATGAGAGAGCCACTACCAAGGCATGTTTTGTTATGCTGAAACTGGGCTGCTGCATACTGCTAAATGGCACCTCTGGGATT GGCCTACCTGGGGATTTCTTGGTTTGTGAAAACAGGAGAGGAGAAATATCTCATACAAGTGAAAGGATACTGGAGAGAGAAATTACCCAT TTCTAAAAAAAAACCACACTCTGTCGTATCTGTGTTAATGTTTTCTAGCATGTACTCTGGTTTCAACAGACACAAATTTATATGTTAACC CAGTTTTCTTGCCGTTCTGTAAGTGTTTTATTCTTAGTGTGATTTTTTTCCATTGGGATGTTTTTGATTGAACTTGTTCATTTTGTTTTG >In-frame_ENST00000325752_ENST00000262291_TCGA-05-4427-01A_TUBD1_chr17_57941025_-_VMP1_chr17_57816198_length(amino acids)=439AA_start in transcript=233_stop in transcript=1552 MAVVFRGNTPSLWLSMSIVTVQLGQCGNQIGFEVFDALLSDSHSSQGLCSMRENEAYQASCKERFFSEEENGVPIARAVLVDMEPKVINQ MLSKAAQSGQWKYGQHACFCQKQGSGNNWAYGYSVHGPRHEESIMNIIRKEVEKCDSFSGFFIIMSMAGGTGSGLGAFVTQNLEDQYSNS LKMNQIIWPYGTGEVIVQNYNSILTLSHLYRSSDALLLHENDAIHKICAKLMNIKQISFSDINQVLAHQLGSVFQPTYSAESSFHYRRNP LGDLMEHLVPHPEFKMLSVRNIPHMSENSLAYTTFTWAGLLKHLRQMLISNAKMEEGIDRHVWPPLSGLPPLSKMSLNKDLHFNTSIANL -------------------------------------------------------------- >In-frame_ENST00000340993_ENST00000262291_TCGA-05-4427-01A_TUBD1_chr17_57941025_-_VMP1_chr17_57816198_length(transcript)=3456nt_BP=1357nt TGGACAGTGAGCATGCGTACCATATCTGAAGTTCGTAAATTGAAATTGAACATGCGTAATTAATCTTTCTGAATAGGAAAAAATATATAC ACAACAAAACTCTCCGTTTATGGAACATGCGCATTTGTTCTCAGTAAGTTTTTCGTTTTGAAAGTGAGCATGCGCATGGTGAGTAGGTTG GTCCGAAGTTTGAACCGGACAGAAGCGCTGGTCGGCGTCTGGCGGTTGTTTTTAGAGGTAATACACCTAGTTTGTGGCTCAGCATGTCAA TTGTAACAGTGCAACTTGGTCAGTGTGGCAATCAGATTGGTTTTGAAGTTTTTGATGCTTTGCTTAGTGACTCACACAGTTCCCAGGGAC TCTGCTCTATGAGAGAGAATGAGGCATATCAAGCATCTTGCAAAGAAAGATTCTTCAGTGAGGAGGAGAATGGAGTTCCAATTGCCCGGG CTGTTCTTGTTGACATGGAACCCAAAGTTATCAATCAAATGCTGTCAAAGGCTGCCCAGTCTGGCCAATGGAAATATGGTCAACATGCAT GCTTCTGTCAAAAACAAGGTTCTGGAAACAACTGGGCATATGGTTACTCTGTTCATGGACCCAGGCATGAAGAATCTATAATGAACATAA TCCGGAAGGAAGTGGAGAAATGTGACTCTTTCAGTGGTTTTTTCATCATAATGAGTATGGCTGGGGGCACAGGATCAGGATTAGGAGCTT TCGTTACACAGAATTTAGAAGATCAGTACTCAAACTCATTGAAAATGAATCAGATTATTTGGCCTTATGGAACTGGTGAGGTTATTGTTC AAAACTACAACTCCATTTTGACACTTTCTCACTTGTACCGATCTTCAGACGCCCTCCTTCTTCATGAGAATGATGCCATCCATAAGATCT GTGCAAAACTGATGAATATCAAGCAGATCTCCTTTAGTGATATCAATCAAGTCCTCGCACATCAGCTGGGAAGTGTGTTCCAGCCTACTT ATTCTGCAGAAAGCTCATTTCACTACAGACGAAATCCACTAGGTATTGATAGGCATGTATGGCCTCCTTTATCAGGACTTCCTCCTCTTA GTAAAATGTCTCTCAACAAGGACCTGCATTTTAACACTTCCATTGCTAACTTGGTCATTCTTCGTGGGAAAGATGTGCAAAGTGCAGATG TGGAGGGATTTAAAGATCCAGCTCTGTATACTTCCTGGTTGAAGCCTGTTAATGCTTTCAACGTGTGGAAAACCCAGCGGGCCTTTAGCA AATATGAGAAGTCTGCAGTGTTGGTCAGCAACAGCCAGTTCTTAGTAAAACCACTTGATATGATTGTTGGGAAGGCATGGAATATGTTTG CTTCAAATATGTGCAACGTATAGAGAAACAGTTTCTTTTGTATGCCTACTGGATAGGCTTAGGAATTTTGTCTTCTGTTGGGCTTGGAAC AGGGCTGCACACCTTTCTGCTTTATCTGGGTCCACATATAGCCTCAGTTACATTAGCTGCTTATGAATGCAATTCAGTTAATTTTCCCGA ACCACCCTATCCTGATCAGATTATTTGTCCAGATGAAGAGGGCACTGAAGGAACCATTTCTTTGTGGAGTATCATCTCAAAAGTTAGGAT TGAAGCCTGCATGTGGGGTATCGGTACAGCAATCGGAGAGCTGCCTCCATATTTCATGGCCAGAGCAGCTCGCCTCTCAGGTGCTGAACC AGATGATGAAGAGTATCAGGAATTTGAAGAGATGCTGGAACATGCAGAGTCTGCACAAGACTTTGCCTCCCGGGCCAAACTGGCAGTTCA AAAACTAGTACAGAAAGTTGGATTTTTTGGAATTTTGGCCTGTGCTTCAATTCCAAATCCTTTATTTGATCTGGCTGGAATAACGTGTGG ACACTTTCTGGTACCTTTTTGGACCTTCTTTGGTGCAACCCTAATTGGAAAAGCAATAATAAAAATGCATATCCAGAAAATTTTTGTTAT AATAACATTCAGCAAGCACATAGTGGAGCAAATGGTGGCTTTCATTGGTGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCA GGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAGGGAGAAAACTGGTTGTCCTGGATGTTTGA AAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTT GAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAGTTTTAAACTGCAGAAATTGGAGTGGATGGGTTCTGCCTTAAATTGGGAGGACTCC AAGCCGGGAAGGAAAATTCCCTTTTCCAACCTGTATCAATTTTTACAACTTTTTTCCTGAAAGCAGTTTAGTCCATACTTTGCACTGACA TACTTTTTCCTTCTGTGCTAAGGTAAGGTATCCACCCTCGATGCAATCCACCTTGTGTTTTCTTAGGGTGGAATGTGATGTTCAGCAGCA AACTTGCAACAGACTGGCCTTCTGTTTGTTACTTTCAAAAGGCCCACATGATACAATTAGAGAATTCCCACCGCACAAAAAAAGTTCCTA AGTATGTTAAATATGTCAAGCTTTTTAGGCTTGTCACAAATGATTGCTTTGTTTTCCTAAGTCATCAAAATGTATATAAATTATCTAGAT TGGATAACAGTCTTGCATGTTTATCATGTTACAATTTAATATTCCATCCTGCCCAACCCTTCCTCTCCCATCCTCAAAAAAGGGCCATTT TATGATGCATTGCACACCCTCTGGGGAAATTGATCTTTAAATTTTGAGACAGTATAAGGAAAATCTGGTTGGTGTCTTACAAGTGAGCTG ACACCATTTTTTATTCTGTGTATTTAGAATGAAGTCTTGAAAAAAACTTTATAAAGACATCTTTAATCATTCCAAAATTGTGTCCGTTTT CTTGAGCGTTTTGATTTTTTACTTTTAGCTTATACCAGCTGAATGGCAGCCTTGCCTAATCCACCTACAACAAGAATTTCTTAAGCTTTC TTTTATTTGCATGAGAGAGCCACTACCAAGGCATGTTTTGTTATGCTGAAACTGGGCTGCTGCATACTGCTAAATGGCACCTCTGGGATT GGCCTACCTGGGGATTTCTTGGTTTGTGAAAACAGGAGAGGAGAAATATCTCATACAAGTGAAAGGATACTGGAGAGAGAAATTACCCAT TTCTAAAAAAAAACCACACTCTGTCGTATCTGTGTTAATGTTTTCTAGCATGTACTCTGGTTTCAACAGACACAAATTTATATGTTAACC CAGTTTTCTTGCCGTTCTGTAAGTGTTTTATTCTTAGTGTGATTTTTTTCCATTGGGATGTTTTTGATTGAACTTGTTCATTTTGTTTTG >In-frame_ENST00000340993_ENST00000262291_TCGA-05-4427-01A_TUBD1_chr17_57941025_-_VMP1_chr17_57816198_length(amino acids)=384AA_start in transcript=218_stop in transcript=1372 MAVVFRGNTPSLWLSMSIVTVQLGQCGNQIGFEVFDALLSDSHSSQGLCSMRENEAYQASCKERFFSEEENGVPIARAVLVDMEPKVINQ MLSKAAQSGQWKYGQHACFCQKQGSGNNWAYGYSVHGPRHEESIMNIIRKEVEKCDSFSGFFIIMSMAGGTGSGLGAFVTQNLEDQYSNS LKMNQIIWPYGTGEVIVQNYNSILTLSHLYRSSDALLLHENDAIHKICAKLMNIKQISFSDINQVLAHQLGSVFQPTYSAESSFHYRRNP LGIDRHVWPPLSGLPPLSKMSLNKDLHFNTSIANLVILRGKDVQSADVEGFKDPALYTSWLKPVNAFNVWKTQRAFSKYEKSAVLVSNSQ -------------------------------------------------------------- >In-frame_ENST00000325752_ENST00000262291_TCGA-DD-AADC-01A_TUBD1_chr17_57963444_-_VMP1_chr17_57851115_length(transcript)=2418nt_BP=598nt AGCTGGAGCGTTCGGTGGACAGTGAGCATGCGTACCATATCTGAAGTTCGTAAATTGAAATTGAACATGCGTAATTAATCTTTCTGAATA GGAAAAAATATATACACAACAAAACTCTCCGTTTATGGAACATGCGCATTTGTTCTCAGTAAGTTTTTCGTTTTGAAAGTGAGCATGCGC ATGGTGAGTAGGTTGGTCCGAAGTTTGAACCGGACAGAAGCGCTGGTCGGCGTCTGGCGGTTGTTTTTAGAGGTAATACACCTAGTTTGT GGCTCAGCATGTCAATTGTAACAGTGCAACTTGGTCAGTGTGGCAATCAGATTGGTTTTGAAGTTTTTGATGCTTTGCTTAGTGACTCAC ACAGTTCCCAGGGACTCTGCTCTATGAGAGAGAATGAGGCATATCAAGCATCTTGCAAAGAAAGATTCTTCAGTGAGGAGGAGAATGGAG TTCCAATTGCCCGGGCTGTTCTTGTTGACATGGAACCCAAAGTTATCAATCAAATGCTGTCAAAGGCTGCCCAGTCTGGCCAATGGAAAT ATGGTCAACATGCATGCTTCTGTCAAAAACAAGGTTCTGGAAACAACTGGGCATATGGGGTATCGGTACAGCAATCGGAGAGCTGCCTCC ATATTTCATGGCCAGAGCAGCTCGCCTCTCAGGTGCTGAACCAGATGATGAAGAGTATCAGGAATTTGAAGAGATGCTGGAACATGCAGA GTCTGCACAAGACTTTGCCTCCCGGGCCAAACTGGCAGTTCAAAAACTAGTACAGAAAGTTGGATTTTTTGGAATTTTGGCCTGTGCTTC AATTCCAAATCCTTTATTTGATCTGGCTGGAATAACGTGTGGACACTTTCTGGTACCTTTTTGGACCTTCTTTGGTGCAACCCTAATTGG AAAAGCAATAATAAAAATGCATATCCAGAAAATTTTTGTTATAATAACATTCAGCAAGCACATAGTGGAGCAAATGGTGGCTTTCATTGG TGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAAT GGGCACACCACAGGGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAA CTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAGTTTTAAACTGCAG AAATTGGAGTGGATGGGTTCTGCCTTAAATTGGGAGGACTCCAAGCCGGGAAGGAAAATTCCCTTTTCCAACCTGTATCAATTTTTACAA CTTTTTTCCTGAAAGCAGTTTAGTCCATACTTTGCACTGACATACTTTTTCCTTCTGTGCTAAGGTAAGGTATCCACCCTCGATGCAATC CACCTTGTGTTTTCTTAGGGTGGAATGTGATGTTCAGCAGCAAACTTGCAACAGACTGGCCTTCTGTTTGTTACTTTCAAAAGGCCCACA TGATACAATTAGAGAATTCCCACCGCACAAAAAAAGTTCCTAAGTATGTTAAATATGTCAAGCTTTTTAGGCTTGTCACAAATGATTGCT TTGTTTTCCTAAGTCATCAAAATGTATATAAATTATCTAGATTGGATAACAGTCTTGCATGTTTATCATGTTACAATTTAATATTCCATC CTGCCCAACCCTTCCTCTCCCATCCTCAAAAAAGGGCCATTTTATGATGCATTGCACACCCTCTGGGGAAATTGATCTTTAAATTTTGAG ACAGTATAAGGAAAATCTGGTTGGTGTCTTACAAGTGAGCTGACACCATTTTTTATTCTGTGTATTTAGAATGAAGTCTTGAAAAAAACT TTATAAAGACATCTTTAATCATTCCAAAATTGTGTCCGTTTTCTTGAGCGTTTTGATTTTTTACTTTTAGCTTATACCAGCTGAATGGCA GCCTTGCCTAATCCACCTACAACAAGAATTTCTTAAGCTTTCTTTTATTTGCATGAGAGAGCCACTACCAAGGCATGTTTTGTTATGCTG AAACTGGGCTGCTGCATACTGCTAAATGGCACCTCTGGGATTGGCCTACCTGGGGATTTCTTGGTTTGTGAAAACAGGAGAGGAGAAATA TCTCATACAAGTGAAAGGATACTGGAGAGAGAAATTACCCATTTCTAAAAAAAAACCACACTCTGTCGTATCTGTGTTAATGTTTTCTAG CATGTACTCTGGTTTCAACAGACACAAATTTATATGTTAACCCAGTTTTCTTGCCGTTCTGTAAGTGTTTTATTCTTAGTGTGATTTTTT >In-frame_ENST00000325752_ENST00000262291_TCGA-DD-AADC-01A_TUBD1_chr17_57963444_-_VMP1_chr17_57851115_length(amino acids)=234AA_start in transcript=532_stop in transcript=1236 MEIWSTCMLLSKTRFWKQLGIWGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLEHAESAQDFASRAKLAVQKLVQKVGFFGILA CASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAIIKMHIQKIFVIITFSKHIVEQMVAFIGAVPGIGPSLQKPFQEYLEAQRQKLHHK -------------------------------------------------------------- >In-frame_ENST00000325752_ENST00000537567_TCGA-DD-AADC-01A_TUBD1_chr17_57963444_-_VMP1_chr17_57851115_length(transcript)=1497nt_BP=598nt AGCTGGAGCGTTCGGTGGACAGTGAGCATGCGTACCATATCTGAAGTTCGTAAATTGAAATTGAACATGCGTAATTAATCTTTCTGAATA GGAAAAAATATATACACAACAAAACTCTCCGTTTATGGAACATGCGCATTTGTTCTCAGTAAGTTTTTCGTTTTGAAAGTGAGCATGCGC ATGGTGAGTAGGTTGGTCCGAAGTTTGAACCGGACAGAAGCGCTGGTCGGCGTCTGGCGGTTGTTTTTAGAGGTAATACACCTAGTTTGT GGCTCAGCATGTCAATTGTAACAGTGCAACTTGGTCAGTGTGGCAATCAGATTGGTTTTGAAGTTTTTGATGCTTTGCTTAGTGACTCAC ACAGTTCCCAGGGACTCTGCTCTATGAGAGAGAATGAGGCATATCAAGCATCTTGCAAAGAAAGATTCTTCAGTGAGGAGGAGAATGGAG TTCCAATTGCCCGGGCTGTTCTTGTTGACATGGAACCCAAAGTTATCAATCAAATGCTGTCAAAGGCTGCCCAGTCTGGCCAATGGAAAT ATGGTCAACATGCATGCTTCTGTCAAAAACAAGGTTCTGGAAACAACTGGGCATATGGGGTATCGGTACAGCAATCGGAGAGCTGCCTCC ATATTTCATGGCCAGAGCAGCTCGCCTCTCAGGTGCTGAACCAGATGATGAAGAGTATCAGGAATTTGAAGAGATGCTGGAACATGCAGA GTCTGCACAAGACTTTGCCTCCCGGGCCAAACTGGCAGTTCAAAAACTAGTACAGAAAGTTGGATTTTTTGGAATTTTGGCCTGTGCTTC AATTCCAAATCCTTTATTTGATCTGGCTGGAATAACGTGTGGACACTTTCTGGTACCTTTTTGGACCTTCTTTGGTGCAACCCTAATTGG AAAAGCAATAATAAAAATGCATATCCAGAAAATTTTTGTTATAATAACATTCAGCAAGCACATAGTGGAGCAAATGGTGGCTTTCATTGG TGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAAT GGGCACACCACAGGGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAA CTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAGTTTTAAACTGCAG AAATTGGAGTGGATGGGTTCTGCCTTAAATTGGGAGGACTCCAAGCCGGGAAGGAAAATTCCCTTTTCCAACCTGTATCAATTTTTACAA CTTTTTTCCTGAAAGCAGTTTAGTCCATACTTTGCACTGACATACTTTTTCCTTCTGTGCTAAGGTAAGGTATCCACCCTCGATGCAATC >In-frame_ENST00000325752_ENST00000537567_TCGA-DD-AADC-01A_TUBD1_chr17_57963444_-_VMP1_chr17_57851115_length(amino acids)=234AA_start in transcript=532_stop in transcript=1236 MEIWSTCMLLSKTRFWKQLGIWGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLEHAESAQDFASRAKLAVQKLVQKVGFFGILA CASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAIIKMHIQKIFVIITFSKHIVEQMVAFIGAVPGIGPSLQKPFQEYLEAQRQKLHHK -------------------------------------------------------------- >In-frame_ENST00000325752_ENST00000539763_TCGA-DD-AADC-01A_TUBD1_chr17_57963444_-_VMP1_chr17_57851115_length(transcript)=1457nt_BP=598nt AGCTGGAGCGTTCGGTGGACAGTGAGCATGCGTACCATATCTGAAGTTCGTAAATTGAAATTGAACATGCGTAATTAATCTTTCTGAATA GGAAAAAATATATACACAACAAAACTCTCCGTTTATGGAACATGCGCATTTGTTCTCAGTAAGTTTTTCGTTTTGAAAGTGAGCATGCGC ATGGTGAGTAGGTTGGTCCGAAGTTTGAACCGGACAGAAGCGCTGGTCGGCGTCTGGCGGTTGTTTTTAGAGGTAATACACCTAGTTTGT GGCTCAGCATGTCAATTGTAACAGTGCAACTTGGTCAGTGTGGCAATCAGATTGGTTTTGAAGTTTTTGATGCTTTGCTTAGTGACTCAC ACAGTTCCCAGGGACTCTGCTCTATGAGAGAGAATGAGGCATATCAAGCATCTTGCAAAGAAAGATTCTTCAGTGAGGAGGAGAATGGAG TTCCAATTGCCCGGGCTGTTCTTGTTGACATGGAACCCAAAGTTATCAATCAAATGCTGTCAAAGGCTGCCCAGTCTGGCCAATGGAAAT ATGGTCAACATGCATGCTTCTGTCAAAAACAAGGTTCTGGAAACAACTGGGCATATGGGGTATCGGTACAGCAATCGGAGAGCTGCCTCC ATATTTCATGGCCAGAGCAGCTCGCCTCTCAGGTGCTGAACCAGATGATGAAGAGTATCAGGAATTTGAAGAGATGCTGGAACATGCAGA GTCTGCACAAGACTTTGCCTCCCGGGCCAAACTGGCAGTTCAAAAACTAGTACAGAAAGTTGGATTTTTTGGAATTTTGGCCTGTGCTTC AATTCCAAATCCTTTATTTGATCTGGCTGGAATAACGTGTGGACACTTTCTGGTACCTTTTTGGACCTTCTTTGGTGCAACCCTAATTGG AAAAGCAATAATAAAAATGCATATCCAGAAAATTTTTGTTATAATAACATTCAGCAAGCACATAGTGGAGCAAATGGTGGCTTTCATTGG TGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAAT GGGCACACCACAGGGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAA CTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAGTTTTAAACTGCAG AAATTGGAGTGGATGGGTTCTGCCTTAAATTGGGAGGACTCCAAGCCGGGAAGGAAAATTCCCTTTTCCAACCTGTATCAATTTTTACAA CTTTTTTCCTGAAAGCAGTTTAGTCCATACTTTGCACTGACATACTTTTTCCTTCTGTGCTAAGGTAAGGTATCCACCCTCGATGCAATC >In-frame_ENST00000325752_ENST00000539763_TCGA-DD-AADC-01A_TUBD1_chr17_57963444_-_VMP1_chr17_57851115_length(amino acids)=234AA_start in transcript=532_stop in transcript=1236 MEIWSTCMLLSKTRFWKQLGIWGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLEHAESAQDFASRAKLAVQKLVQKVGFFGILA CASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAIIKMHIQKIFVIITFSKHIVEQMVAFIGAVPGIGPSLQKPFQEYLEAQRQKLHHK -------------------------------------------------------------- >In-frame_ENST00000325752_ENST00000536180_TCGA-DD-AADC-01A_TUBD1_chr17_57963444_-_VMP1_chr17_57851115_length(transcript)=1329nt_BP=598nt AGCTGGAGCGTTCGGTGGACAGTGAGCATGCGTACCATATCTGAAGTTCGTAAATTGAAATTGAACATGCGTAATTAATCTTTCTGAATA GGAAAAAATATATACACAACAAAACTCTCCGTTTATGGAACATGCGCATTTGTTCTCAGTAAGTTTTTCGTTTTGAAAGTGAGCATGCGC ATGGTGAGTAGGTTGGTCCGAAGTTTGAACCGGACAGAAGCGCTGGTCGGCGTCTGGCGGTTGTTTTTAGAGGTAATACACCTAGTTTGT GGCTCAGCATGTCAATTGTAACAGTGCAACTTGGTCAGTGTGGCAATCAGATTGGTTTTGAAGTTTTTGATGCTTTGCTTAGTGACTCAC ACAGTTCCCAGGGACTCTGCTCTATGAGAGAGAATGAGGCATATCAAGCATCTTGCAAAGAAAGATTCTTCAGTGAGGAGGAGAATGGAG TTCCAATTGCCCGGGCTGTTCTTGTTGACATGGAACCCAAAGTTATCAATCAAATGCTGTCAAAGGCTGCCCAGTCTGGCCAATGGAAAT ATGGTCAACATGCATGCTTCTGTCAAAAACAAGGTTCTGGAAACAACTGGGCATATGGGGTATCGGTACAGCAATCGGAGAGCTGCCTCC ATATTTCATGGCCAGAGCAGCTCGCCTCTCAGGTGCTGAACCAGATGATGAAGAGTATCAGGAATTTGAAGAGATGCTGGAACATGCAGA GTCTGCACAAGACTTTGCCTCCCGGGCCAAACTGGCAGTTCAAAAACTAGTACAGAAAGTTGGATTTTTTGGAATTTTGGCCTGTGCTTC AATTCCAAATCCTTTATTTGATCTGGCTGGAATAACGTGTGGACACTTTCTGGTACCTTTTTGGACCTTCTTTGGTGCAACCCTAATTGG AAAAGCAATAATAAAAATGCATATCCAGAAAATTTTTGTTATAATAACATTCAGCAAGCACATAGTGGAGCAAATGGTGGCTTTCATTGG TGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAAT GGGCACACCACAGGGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAA CTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAGTTTTAAACTGCAG >In-frame_ENST00000325752_ENST00000536180_TCGA-DD-AADC-01A_TUBD1_chr17_57963444_-_VMP1_chr17_57851115_length(amino acids)=234AA_start in transcript=532_stop in transcript=1236 MEIWSTCMLLSKTRFWKQLGIWGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLEHAESAQDFASRAKLAVQKLVQKVGFFGILA CASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAIIKMHIQKIFVIITFSKHIVEQMVAFIGAVPGIGPSLQKPFQEYLEAQRQKLHHK -------------------------------------------------------------- >In-frame_ENST00000325752_ENST00000545362_TCGA-DD-AADC-01A_TUBD1_chr17_57963444_-_VMP1_chr17_57851115_length(transcript)=1489nt_BP=598nt AGCTGGAGCGTTCGGTGGACAGTGAGCATGCGTACCATATCTGAAGTTCGTAAATTGAAATTGAACATGCGTAATTAATCTTTCTGAATA GGAAAAAATATATACACAACAAAACTCTCCGTTTATGGAACATGCGCATTTGTTCTCAGTAAGTTTTTCGTTTTGAAAGTGAGCATGCGC ATGGTGAGTAGGTTGGTCCGAAGTTTGAACCGGACAGAAGCGCTGGTCGGCGTCTGGCGGTTGTTTTTAGAGGTAATACACCTAGTTTGT GGCTCAGCATGTCAATTGTAACAGTGCAACTTGGTCAGTGTGGCAATCAGATTGGTTTTGAAGTTTTTGATGCTTTGCTTAGTGACTCAC ACAGTTCCCAGGGACTCTGCTCTATGAGAGAGAATGAGGCATATCAAGCATCTTGCAAAGAAAGATTCTTCAGTGAGGAGGAGAATGGAG TTCCAATTGCCCGGGCTGTTCTTGTTGACATGGAACCCAAAGTTATCAATCAAATGCTGTCAAAGGCTGCCCAGTCTGGCCAATGGAAAT ATGGTCAACATGCATGCTTCTGTCAAAAACAAGGTTCTGGAAACAACTGGGCATATGGGGTATCGGTACAGCAATCGGAGAGCTGCCTCC ATATTTCATGGCCAGAGCAGCTCGCCTCTCAGGTGCTGAACCAGATGATGAAGAGTATCAGGAATTTGAAGAGATGCTGGAACATGCAGA GTCTGCACAAGACTTTGCCTCCCGGGCCAAACTGGCAGTTCAAAAACTAGTACAGAAAGTTGGATTTTTTGGAATTTTGGCCTGTGCTTC AATTCCAAATCCTTTATTTGATCTGGCTGGAATAACGTGTGGACACTTTCTGGTACCTTTTTGGACCTTCTTTGGTGCAACCCTAATTGG AAAAGCAATAATAAAAATGCATATCCAGAAAATTTTTGTTATAATAACATTCAGCAAGCACATAGTGGAGCAAATGGTGGCTTTCATTGG TGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAAT GGGCACACCACAGGGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAA CTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAGTTTTAAACTGCAG AAATTGGAGTGGATGGGTTCTGCCTTAAATTGGGAGGACTCCAAGCCGGGAAGGAAAATTCCCTTTTCCAACCTGTATCAATTTTTACAA CTTTTTTCCTGAAAGCAGTTTAGTCCATACTTTGCACTGACATACTTTTTCCTTCTGTGCTAAGGTAAGGTATCCACCCTCGATGCAATC >In-frame_ENST00000325752_ENST00000545362_TCGA-DD-AADC-01A_TUBD1_chr17_57963444_-_VMP1_chr17_57851115_length(amino acids)=234AA_start in transcript=532_stop in transcript=1236 MEIWSTCMLLSKTRFWKQLGIWGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLEHAESAQDFASRAKLAVQKLVQKVGFFGILA CASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAIIKMHIQKIFVIITFSKHIVEQMVAFIGAVPGIGPSLQKPFQEYLEAQRQKLHHK -------------------------------------------------------------- >In-frame_ENST00000340993_ENST00000262291_TCGA-DD-AADC-01A_TUBD1_chr17_57963444_-_VMP1_chr17_57851115_length(transcript)=2403nt_BP=583nt TGGACAGTGAGCATGCGTACCATATCTGAAGTTCGTAAATTGAAATTGAACATGCGTAATTAATCTTTCTGAATAGGAAAAAATATATAC ACAACAAAACTCTCCGTTTATGGAACATGCGCATTTGTTCTCAGTAAGTTTTTCGTTTTGAAAGTGAGCATGCGCATGGTGAGTAGGTTG GTCCGAAGTTTGAACCGGACAGAAGCGCTGGTCGGCGTCTGGCGGTTGTTTTTAGAGGTAATACACCTAGTTTGTGGCTCAGCATGTCAA TTGTAACAGTGCAACTTGGTCAGTGTGGCAATCAGATTGGTTTTGAAGTTTTTGATGCTTTGCTTAGTGACTCACACAGTTCCCAGGGAC TCTGCTCTATGAGAGAGAATGAGGCATATCAAGCATCTTGCAAAGAAAGATTCTTCAGTGAGGAGGAGAATGGAGTTCCAATTGCCCGGG CTGTTCTTGTTGACATGGAACCCAAAGTTATCAATCAAATGCTGTCAAAGGCTGCCCAGTCTGGCCAATGGAAATATGGTCAACATGCAT GCTTCTGTCAAAAACAAGGTTCTGGAAACAACTGGGCATATGGGGTATCGGTACAGCAATCGGAGAGCTGCCTCCATATTTCATGGCCAG AGCAGCTCGCCTCTCAGGTGCTGAACCAGATGATGAAGAGTATCAGGAATTTGAAGAGATGCTGGAACATGCAGAGTCTGCACAAGACTT TGCCTCCCGGGCCAAACTGGCAGTTCAAAAACTAGTACAGAAAGTTGGATTTTTTGGAATTTTGGCCTGTGCTTCAATTCCAAATCCTTT ATTTGATCTGGCTGGAATAACGTGTGGACACTTTCTGGTACCTTTTTGGACCTTCTTTGGTGCAACCCTAATTGGAAAAGCAATAATAAA AATGCATATCCAGAAAATTTTTGTTATAATAACATTCAGCAAGCACATAGTGGAGCAAATGGTGGCTTTCATTGGTGCTGTCCCCGGCAT AGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAGGG AGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAG TTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAGTTTTAAACTGCAGAAATTGGAGTGGATG GGTTCTGCCTTAAATTGGGAGGACTCCAAGCCGGGAAGGAAAATTCCCTTTTCCAACCTGTATCAATTTTTACAACTTTTTTCCTGAAAG CAGTTTAGTCCATACTTTGCACTGACATACTTTTTCCTTCTGTGCTAAGGTAAGGTATCCACCCTCGATGCAATCCACCTTGTGTTTTCT TAGGGTGGAATGTGATGTTCAGCAGCAAACTTGCAACAGACTGGCCTTCTGTTTGTTACTTTCAAAAGGCCCACATGATACAATTAGAGA ATTCCCACCGCACAAAAAAAGTTCCTAAGTATGTTAAATATGTCAAGCTTTTTAGGCTTGTCACAAATGATTGCTTTGTTTTCCTAAGTC ATCAAAATGTATATAAATTATCTAGATTGGATAACAGTCTTGCATGTTTATCATGTTACAATTTAATATTCCATCCTGCCCAACCCTTCC TCTCCCATCCTCAAAAAAGGGCCATTTTATGATGCATTGCACACCCTCTGGGGAAATTGATCTTTAAATTTTGAGACAGTATAAGGAAAA TCTGGTTGGTGTCTTACAAGTGAGCTGACACCATTTTTTATTCTGTGTATTTAGAATGAAGTCTTGAAAAAAACTTTATAAAGACATCTT TAATCATTCCAAAATTGTGTCCGTTTTCTTGAGCGTTTTGATTTTTTACTTTTAGCTTATACCAGCTGAATGGCAGCCTTGCCTAATCCA CCTACAACAAGAATTTCTTAAGCTTTCTTTTATTTGCATGAGAGAGCCACTACCAAGGCATGTTTTGTTATGCTGAAACTGGGCTGCTGC ATACTGCTAAATGGCACCTCTGGGATTGGCCTACCTGGGGATTTCTTGGTTTGTGAAAACAGGAGAGGAGAAATATCTCATACAAGTGAA AGGATACTGGAGAGAGAAATTACCCATTTCTAAAAAAAAACCACACTCTGTCGTATCTGTGTTAATGTTTTCTAGCATGTACTCTGGTTT CAACAGACACAAATTTATATGTTAACCCAGTTTTCTTGCCGTTCTGTAAGTGTTTTATTCTTAGTGTGATTTTTTTCCATTGGGATGTTT >In-frame_ENST00000340993_ENST00000262291_TCGA-DD-AADC-01A_TUBD1_chr17_57963444_-_VMP1_chr17_57851115_length(amino acids)=234AA_start in transcript=517_stop in transcript=1221 MEIWSTCMLLSKTRFWKQLGIWGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLEHAESAQDFASRAKLAVQKLVQKVGFFGILA CASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAIIKMHIQKIFVIITFSKHIVEQMVAFIGAVPGIGPSLQKPFQEYLEAQRQKLHHK -------------------------------------------------------------- >In-frame_ENST00000340993_ENST00000537567_TCGA-DD-AADC-01A_TUBD1_chr17_57963444_-_VMP1_chr17_57851115_length(transcript)=1482nt_BP=583nt TGGACAGTGAGCATGCGTACCATATCTGAAGTTCGTAAATTGAAATTGAACATGCGTAATTAATCTTTCTGAATAGGAAAAAATATATAC ACAACAAAACTCTCCGTTTATGGAACATGCGCATTTGTTCTCAGTAAGTTTTTCGTTTTGAAAGTGAGCATGCGCATGGTGAGTAGGTTG GTCCGAAGTTTGAACCGGACAGAAGCGCTGGTCGGCGTCTGGCGGTTGTTTTTAGAGGTAATACACCTAGTTTGTGGCTCAGCATGTCAA TTGTAACAGTGCAACTTGGTCAGTGTGGCAATCAGATTGGTTTTGAAGTTTTTGATGCTTTGCTTAGTGACTCACACAGTTCCCAGGGAC TCTGCTCTATGAGAGAGAATGAGGCATATCAAGCATCTTGCAAAGAAAGATTCTTCAGTGAGGAGGAGAATGGAGTTCCAATTGCCCGGG CTGTTCTTGTTGACATGGAACCCAAAGTTATCAATCAAATGCTGTCAAAGGCTGCCCAGTCTGGCCAATGGAAATATGGTCAACATGCAT GCTTCTGTCAAAAACAAGGTTCTGGAAACAACTGGGCATATGGGGTATCGGTACAGCAATCGGAGAGCTGCCTCCATATTTCATGGCCAG AGCAGCTCGCCTCTCAGGTGCTGAACCAGATGATGAAGAGTATCAGGAATTTGAAGAGATGCTGGAACATGCAGAGTCTGCACAAGACTT TGCCTCCCGGGCCAAACTGGCAGTTCAAAAACTAGTACAGAAAGTTGGATTTTTTGGAATTTTGGCCTGTGCTTCAATTCCAAATCCTTT ATTTGATCTGGCTGGAATAACGTGTGGACACTTTCTGGTACCTTTTTGGACCTTCTTTGGTGCAACCCTAATTGGAAAAGCAATAATAAA AATGCATATCCAGAAAATTTTTGTTATAATAACATTCAGCAAGCACATAGTGGAGCAAATGGTGGCTTTCATTGGTGCTGTCCCCGGCAT AGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAGGG AGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAG TTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAGTTTTAAACTGCAGAAATTGGAGTGGATG GGTTCTGCCTTAAATTGGGAGGACTCCAAGCCGGGAAGGAAAATTCCCTTTTCCAACCTGTATCAATTTTTACAACTTTTTTCCTGAAAG CAGTTTAGTCCATACTTTGCACTGACATACTTTTTCCTTCTGTGCTAAGGTAAGGTATCCACCCTCGATGCAATCCACCTTGTGTTTTCT >In-frame_ENST00000340993_ENST00000537567_TCGA-DD-AADC-01A_TUBD1_chr17_57963444_-_VMP1_chr17_57851115_length(amino acids)=234AA_start in transcript=517_stop in transcript=1221 MEIWSTCMLLSKTRFWKQLGIWGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLEHAESAQDFASRAKLAVQKLVQKVGFFGILA CASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAIIKMHIQKIFVIITFSKHIVEQMVAFIGAVPGIGPSLQKPFQEYLEAQRQKLHHK -------------------------------------------------------------- >In-frame_ENST00000340993_ENST00000539763_TCGA-DD-AADC-01A_TUBD1_chr17_57963444_-_VMP1_chr17_57851115_length(transcript)=1442nt_BP=583nt TGGACAGTGAGCATGCGTACCATATCTGAAGTTCGTAAATTGAAATTGAACATGCGTAATTAATCTTTCTGAATAGGAAAAAATATATAC ACAACAAAACTCTCCGTTTATGGAACATGCGCATTTGTTCTCAGTAAGTTTTTCGTTTTGAAAGTGAGCATGCGCATGGTGAGTAGGTTG GTCCGAAGTTTGAACCGGACAGAAGCGCTGGTCGGCGTCTGGCGGTTGTTTTTAGAGGTAATACACCTAGTTTGTGGCTCAGCATGTCAA TTGTAACAGTGCAACTTGGTCAGTGTGGCAATCAGATTGGTTTTGAAGTTTTTGATGCTTTGCTTAGTGACTCACACAGTTCCCAGGGAC TCTGCTCTATGAGAGAGAATGAGGCATATCAAGCATCTTGCAAAGAAAGATTCTTCAGTGAGGAGGAGAATGGAGTTCCAATTGCCCGGG CTGTTCTTGTTGACATGGAACCCAAAGTTATCAATCAAATGCTGTCAAAGGCTGCCCAGTCTGGCCAATGGAAATATGGTCAACATGCAT GCTTCTGTCAAAAACAAGGTTCTGGAAACAACTGGGCATATGGGGTATCGGTACAGCAATCGGAGAGCTGCCTCCATATTTCATGGCCAG AGCAGCTCGCCTCTCAGGTGCTGAACCAGATGATGAAGAGTATCAGGAATTTGAAGAGATGCTGGAACATGCAGAGTCTGCACAAGACTT TGCCTCCCGGGCCAAACTGGCAGTTCAAAAACTAGTACAGAAAGTTGGATTTTTTGGAATTTTGGCCTGTGCTTCAATTCCAAATCCTTT ATTTGATCTGGCTGGAATAACGTGTGGACACTTTCTGGTACCTTTTTGGACCTTCTTTGGTGCAACCCTAATTGGAAAAGCAATAATAAA AATGCATATCCAGAAAATTTTTGTTATAATAACATTCAGCAAGCACATAGTGGAGCAAATGGTGGCTTTCATTGGTGCTGTCCCCGGCAT AGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAGGG AGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAG TTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAGTTTTAAACTGCAGAAATTGGAGTGGATG GGTTCTGCCTTAAATTGGGAGGACTCCAAGCCGGGAAGGAAAATTCCCTTTTCCAACCTGTATCAATTTTTACAACTTTTTTCCTGAAAG CAGTTTAGTCCATACTTTGCACTGACATACTTTTTCCTTCTGTGCTAAGGTAAGGTATCCACCCTCGATGCAATCCACCTTGTGTTTTCT >In-frame_ENST00000340993_ENST00000539763_TCGA-DD-AADC-01A_TUBD1_chr17_57963444_-_VMP1_chr17_57851115_length(amino acids)=234AA_start in transcript=517_stop in transcript=1221 MEIWSTCMLLSKTRFWKQLGIWGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLEHAESAQDFASRAKLAVQKLVQKVGFFGILA CASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAIIKMHIQKIFVIITFSKHIVEQMVAFIGAVPGIGPSLQKPFQEYLEAQRQKLHHK -------------------------------------------------------------- >In-frame_ENST00000340993_ENST00000536180_TCGA-DD-AADC-01A_TUBD1_chr17_57963444_-_VMP1_chr17_57851115_length(transcript)=1314nt_BP=583nt TGGACAGTGAGCATGCGTACCATATCTGAAGTTCGTAAATTGAAATTGAACATGCGTAATTAATCTTTCTGAATAGGAAAAAATATATAC ACAACAAAACTCTCCGTTTATGGAACATGCGCATTTGTTCTCAGTAAGTTTTTCGTTTTGAAAGTGAGCATGCGCATGGTGAGTAGGTTG GTCCGAAGTTTGAACCGGACAGAAGCGCTGGTCGGCGTCTGGCGGTTGTTTTTAGAGGTAATACACCTAGTTTGTGGCTCAGCATGTCAA TTGTAACAGTGCAACTTGGTCAGTGTGGCAATCAGATTGGTTTTGAAGTTTTTGATGCTTTGCTTAGTGACTCACACAGTTCCCAGGGAC TCTGCTCTATGAGAGAGAATGAGGCATATCAAGCATCTTGCAAAGAAAGATTCTTCAGTGAGGAGGAGAATGGAGTTCCAATTGCCCGGG CTGTTCTTGTTGACATGGAACCCAAAGTTATCAATCAAATGCTGTCAAAGGCTGCCCAGTCTGGCCAATGGAAATATGGTCAACATGCAT GCTTCTGTCAAAAACAAGGTTCTGGAAACAACTGGGCATATGGGGTATCGGTACAGCAATCGGAGAGCTGCCTCCATATTTCATGGCCAG AGCAGCTCGCCTCTCAGGTGCTGAACCAGATGATGAAGAGTATCAGGAATTTGAAGAGATGCTGGAACATGCAGAGTCTGCACAAGACTT TGCCTCCCGGGCCAAACTGGCAGTTCAAAAACTAGTACAGAAAGTTGGATTTTTTGGAATTTTGGCCTGTGCTTCAATTCCAAATCCTTT ATTTGATCTGGCTGGAATAACGTGTGGACACTTTCTGGTACCTTTTTGGACCTTCTTTGGTGCAACCCTAATTGGAAAAGCAATAATAAA AATGCATATCCAGAAAATTTTTGTTATAATAACATTCAGCAAGCACATAGTGGAGCAAATGGTGGCTTTCATTGGTGCTGTCCCCGGCAT AGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAGGG AGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAG TTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAGTTTTAAACTGCAGAAATTGGAGTGGATG >In-frame_ENST00000340993_ENST00000536180_TCGA-DD-AADC-01A_TUBD1_chr17_57963444_-_VMP1_chr17_57851115_length(amino acids)=234AA_start in transcript=517_stop in transcript=1221 MEIWSTCMLLSKTRFWKQLGIWGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLEHAESAQDFASRAKLAVQKLVQKVGFFGILA CASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAIIKMHIQKIFVIITFSKHIVEQMVAFIGAVPGIGPSLQKPFQEYLEAQRQKLHHK -------------------------------------------------------------- >In-frame_ENST00000340993_ENST00000545362_TCGA-DD-AADC-01A_TUBD1_chr17_57963444_-_VMP1_chr17_57851115_length(transcript)=1474nt_BP=583nt TGGACAGTGAGCATGCGTACCATATCTGAAGTTCGTAAATTGAAATTGAACATGCGTAATTAATCTTTCTGAATAGGAAAAAATATATAC ACAACAAAACTCTCCGTTTATGGAACATGCGCATTTGTTCTCAGTAAGTTTTTCGTTTTGAAAGTGAGCATGCGCATGGTGAGTAGGTTG GTCCGAAGTTTGAACCGGACAGAAGCGCTGGTCGGCGTCTGGCGGTTGTTTTTAGAGGTAATACACCTAGTTTGTGGCTCAGCATGTCAA TTGTAACAGTGCAACTTGGTCAGTGTGGCAATCAGATTGGTTTTGAAGTTTTTGATGCTTTGCTTAGTGACTCACACAGTTCCCAGGGAC TCTGCTCTATGAGAGAGAATGAGGCATATCAAGCATCTTGCAAAGAAAGATTCTTCAGTGAGGAGGAGAATGGAGTTCCAATTGCCCGGG CTGTTCTTGTTGACATGGAACCCAAAGTTATCAATCAAATGCTGTCAAAGGCTGCCCAGTCTGGCCAATGGAAATATGGTCAACATGCAT GCTTCTGTCAAAAACAAGGTTCTGGAAACAACTGGGCATATGGGGTATCGGTACAGCAATCGGAGAGCTGCCTCCATATTTCATGGCCAG AGCAGCTCGCCTCTCAGGTGCTGAACCAGATGATGAAGAGTATCAGGAATTTGAAGAGATGCTGGAACATGCAGAGTCTGCACAAGACTT TGCCTCCCGGGCCAAACTGGCAGTTCAAAAACTAGTACAGAAAGTTGGATTTTTTGGAATTTTGGCCTGTGCTTCAATTCCAAATCCTTT ATTTGATCTGGCTGGAATAACGTGTGGACACTTTCTGGTACCTTTTTGGACCTTCTTTGGTGCAACCCTAATTGGAAAAGCAATAATAAA AATGCATATCCAGAAAATTTTTGTTATAATAACATTCAGCAAGCACATAGTGGAGCAAATGGTGGCTTTCATTGGTGCTGTCCCCGGCAT AGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAGGG AGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAG TTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAGTTTTAAACTGCAGAAATTGGAGTGGATG GGTTCTGCCTTAAATTGGGAGGACTCCAAGCCGGGAAGGAAAATTCCCTTTTCCAACCTGTATCAATTTTTACAACTTTTTTCCTGAAAG CAGTTTAGTCCATACTTTGCACTGACATACTTTTTCCTTCTGTGCTAAGGTAAGGTATCCACCCTCGATGCAATCCACCTTGTGTTTTCT >In-frame_ENST00000340993_ENST00000545362_TCGA-DD-AADC-01A_TUBD1_chr17_57963444_-_VMP1_chr17_57851115_length(amino acids)=234AA_start in transcript=517_stop in transcript=1221 MEIWSTCMLLSKTRFWKQLGIWGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLEHAESAQDFASRAKLAVQKLVQKVGFFGILA CASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAIIKMHIQKIFVIITFSKHIVEQMVAFIGAVPGIGPSLQKPFQEYLEAQRQKLHHK -------------------------------------------------------------- >In-frame_ENST00000394239_ENST00000262291_TCGA-DD-AADC-01A_TUBD1_chr17_57963444_-_VMP1_chr17_57851115_length(transcript)=2341nt_BP=521nt ATCTTTCTGAATAGGAAAAAATATATACACAACAAAACTCTCCGTTTATGGAACATGCGCATTTGTTCTCAGTAAGTTTTTCGTTTTGAA AGTGAGCATGCGCATGGTGAGTAGGTTGGTCCGAAGTTTGAACCGGACAGAAGCGCTGGTCGGCGTCTGGCGGTTGTTTTTAGAGGTAAT ACACCTAGTTTGTGGCTCAGCATGTCAATTGTAACAGTGCAACTTGGTCAGTGTGGCAATCAGATTGGTTTTGAAGTTTTTGATGCTTTG CTTAGTGACTCACACAGTTCCCAGGGACTCTGCTCTATGAGAGAGAATGAGGCATATCAAGCATCTTGCAAAGAAAGATTCTTCAGTGAG GAGGAGAATGGAGTTCCAATTGCCCGGGCTGTTCTTGTTGACATGGAACCCAAAGTTATCAATCAAATGCTGTCAAAGGCTGCCCAGTCT GGCCAATGGAAATATGGTCAACATGCATGCTTCTGTCAAAAACAAGGTTCTGGAAACAACTGGGCATATGGGGTATCGGTACAGCAATCG GAGAGCTGCCTCCATATTTCATGGCCAGAGCAGCTCGCCTCTCAGGTGCTGAACCAGATGATGAAGAGTATCAGGAATTTGAAGAGATGC TGGAACATGCAGAGTCTGCACAAGACTTTGCCTCCCGGGCCAAACTGGCAGTTCAAAAACTAGTACAGAAAGTTGGATTTTTTGGAATTT TGGCCTGTGCTTCAATTCCAAATCCTTTATTTGATCTGGCTGGAATAACGTGTGGACACTTTCTGGTACCTTTTTGGACCTTCTTTGGTG CAACCCTAATTGGAAAAGCAATAATAAAAATGCATATCCAGAAAATTTTTGTTATAATAACATTCAGCAAGCACATAGTGGAGCAAATGG TGGCTTTCATTGGTGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACC ACAAAAGCGAAATGGGCACACCACAGGGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCC TATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAG TTTTAAACTGCAGAAATTGGAGTGGATGGGTTCTGCCTTAAATTGGGAGGACTCCAAGCCGGGAAGGAAAATTCCCTTTTCCAACCTGTA TCAATTTTTACAACTTTTTTCCTGAAAGCAGTTTAGTCCATACTTTGCACTGACATACTTTTTCCTTCTGTGCTAAGGTAAGGTATCCAC CCTCGATGCAATCCACCTTGTGTTTTCTTAGGGTGGAATGTGATGTTCAGCAGCAAACTTGCAACAGACTGGCCTTCTGTTTGTTACTTT CAAAAGGCCCACATGATACAATTAGAGAATTCCCACCGCACAAAAAAAGTTCCTAAGTATGTTAAATATGTCAAGCTTTTTAGGCTTGTC ACAAATGATTGCTTTGTTTTCCTAAGTCATCAAAATGTATATAAATTATCTAGATTGGATAACAGTCTTGCATGTTTATCATGTTACAAT TTAATATTCCATCCTGCCCAACCCTTCCTCTCCCATCCTCAAAAAAGGGCCATTTTATGATGCATTGCACACCCTCTGGGGAAATTGATC TTTAAATTTTGAGACAGTATAAGGAAAATCTGGTTGGTGTCTTACAAGTGAGCTGACACCATTTTTTATTCTGTGTATTTAGAATGAAGT CTTGAAAAAAACTTTATAAAGACATCTTTAATCATTCCAAAATTGTGTCCGTTTTCTTGAGCGTTTTGATTTTTTACTTTTAGCTTATAC CAGCTGAATGGCAGCCTTGCCTAATCCACCTACAACAAGAATTTCTTAAGCTTTCTTTTATTTGCATGAGAGAGCCACTACCAAGGCATG TTTTGTTATGCTGAAACTGGGCTGCTGCATACTGCTAAATGGCACCTCTGGGATTGGCCTACCTGGGGATTTCTTGGTTTGTGAAAACAG GAGAGGAGAAATATCTCATACAAGTGAAAGGATACTGGAGAGAGAAATTACCCATTTCTAAAAAAAAACCACACTCTGTCGTATCTGTGT TAATGTTTTCTAGCATGTACTCTGGTTTCAACAGACACAAATTTATATGTTAACCCAGTTTTCTTGCCGTTCTGTAAGTGTTTTATTCTT AGTGTGATTTTTTTCCATTGGGATGTTTTTGATTGAACTTGTTCATTTTGTTTTGCTTGGGAGGAAAATAAACAATTTTACTTTTTTCCT >In-frame_ENST00000394239_ENST00000262291_TCGA-DD-AADC-01A_TUBD1_chr17_57963444_-_VMP1_chr17_57851115_length(amino acids)=234AA_start in transcript=455_stop in transcript=1159 MEIWSTCMLLSKTRFWKQLGIWGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLEHAESAQDFASRAKLAVQKLVQKVGFFGILA CASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAIIKMHIQKIFVIITFSKHIVEQMVAFIGAVPGIGPSLQKPFQEYLEAQRQKLHHK -------------------------------------------------------------- >In-frame_ENST00000394239_ENST00000537567_TCGA-DD-AADC-01A_TUBD1_chr17_57963444_-_VMP1_chr17_57851115_length(transcript)=1420nt_BP=521nt ATCTTTCTGAATAGGAAAAAATATATACACAACAAAACTCTCCGTTTATGGAACATGCGCATTTGTTCTCAGTAAGTTTTTCGTTTTGAA AGTGAGCATGCGCATGGTGAGTAGGTTGGTCCGAAGTTTGAACCGGACAGAAGCGCTGGTCGGCGTCTGGCGGTTGTTTTTAGAGGTAAT ACACCTAGTTTGTGGCTCAGCATGTCAATTGTAACAGTGCAACTTGGTCAGTGTGGCAATCAGATTGGTTTTGAAGTTTTTGATGCTTTG CTTAGTGACTCACACAGTTCCCAGGGACTCTGCTCTATGAGAGAGAATGAGGCATATCAAGCATCTTGCAAAGAAAGATTCTTCAGTGAG GAGGAGAATGGAGTTCCAATTGCCCGGGCTGTTCTTGTTGACATGGAACCCAAAGTTATCAATCAAATGCTGTCAAAGGCTGCCCAGTCT GGCCAATGGAAATATGGTCAACATGCATGCTTCTGTCAAAAACAAGGTTCTGGAAACAACTGGGCATATGGGGTATCGGTACAGCAATCG GAGAGCTGCCTCCATATTTCATGGCCAGAGCAGCTCGCCTCTCAGGTGCTGAACCAGATGATGAAGAGTATCAGGAATTTGAAGAGATGC TGGAACATGCAGAGTCTGCACAAGACTTTGCCTCCCGGGCCAAACTGGCAGTTCAAAAACTAGTACAGAAAGTTGGATTTTTTGGAATTT TGGCCTGTGCTTCAATTCCAAATCCTTTATTTGATCTGGCTGGAATAACGTGTGGACACTTTCTGGTACCTTTTTGGACCTTCTTTGGTG CAACCCTAATTGGAAAAGCAATAATAAAAATGCATATCCAGAAAATTTTTGTTATAATAACATTCAGCAAGCACATAGTGGAGCAAATGG TGGCTTTCATTGGTGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACC ACAAAAGCGAAATGGGCACACCACAGGGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCC TATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAG TTTTAAACTGCAGAAATTGGAGTGGATGGGTTCTGCCTTAAATTGGGAGGACTCCAAGCCGGGAAGGAAAATTCCCTTTTCCAACCTGTA TCAATTTTTACAACTTTTTTCCTGAAAGCAGTTTAGTCCATACTTTGCACTGACATACTTTTTCCTTCTGTGCTAAGGTAAGGTATCCAC >In-frame_ENST00000394239_ENST00000537567_TCGA-DD-AADC-01A_TUBD1_chr17_57963444_-_VMP1_chr17_57851115_length(amino acids)=234AA_start in transcript=455_stop in transcript=1159 MEIWSTCMLLSKTRFWKQLGIWGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLEHAESAQDFASRAKLAVQKLVQKVGFFGILA CASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAIIKMHIQKIFVIITFSKHIVEQMVAFIGAVPGIGPSLQKPFQEYLEAQRQKLHHK -------------------------------------------------------------- >In-frame_ENST00000394239_ENST00000539763_TCGA-DD-AADC-01A_TUBD1_chr17_57963444_-_VMP1_chr17_57851115_length(transcript)=1380nt_BP=521nt ATCTTTCTGAATAGGAAAAAATATATACACAACAAAACTCTCCGTTTATGGAACATGCGCATTTGTTCTCAGTAAGTTTTTCGTTTTGAA AGTGAGCATGCGCATGGTGAGTAGGTTGGTCCGAAGTTTGAACCGGACAGAAGCGCTGGTCGGCGTCTGGCGGTTGTTTTTAGAGGTAAT ACACCTAGTTTGTGGCTCAGCATGTCAATTGTAACAGTGCAACTTGGTCAGTGTGGCAATCAGATTGGTTTTGAAGTTTTTGATGCTTTG CTTAGTGACTCACACAGTTCCCAGGGACTCTGCTCTATGAGAGAGAATGAGGCATATCAAGCATCTTGCAAAGAAAGATTCTTCAGTGAG GAGGAGAATGGAGTTCCAATTGCCCGGGCTGTTCTTGTTGACATGGAACCCAAAGTTATCAATCAAATGCTGTCAAAGGCTGCCCAGTCT GGCCAATGGAAATATGGTCAACATGCATGCTTCTGTCAAAAACAAGGTTCTGGAAACAACTGGGCATATGGGGTATCGGTACAGCAATCG GAGAGCTGCCTCCATATTTCATGGCCAGAGCAGCTCGCCTCTCAGGTGCTGAACCAGATGATGAAGAGTATCAGGAATTTGAAGAGATGC TGGAACATGCAGAGTCTGCACAAGACTTTGCCTCCCGGGCCAAACTGGCAGTTCAAAAACTAGTACAGAAAGTTGGATTTTTTGGAATTT TGGCCTGTGCTTCAATTCCAAATCCTTTATTTGATCTGGCTGGAATAACGTGTGGACACTTTCTGGTACCTTTTTGGACCTTCTTTGGTG CAACCCTAATTGGAAAAGCAATAATAAAAATGCATATCCAGAAAATTTTTGTTATAATAACATTCAGCAAGCACATAGTGGAGCAAATGG TGGCTTTCATTGGTGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACC ACAAAAGCGAAATGGGCACACCACAGGGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCC TATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAG TTTTAAACTGCAGAAATTGGAGTGGATGGGTTCTGCCTTAAATTGGGAGGACTCCAAGCCGGGAAGGAAAATTCCCTTTTCCAACCTGTA TCAATTTTTACAACTTTTTTCCTGAAAGCAGTTTAGTCCATACTTTGCACTGACATACTTTTTCCTTCTGTGCTAAGGTAAGGTATCCAC >In-frame_ENST00000394239_ENST00000539763_TCGA-DD-AADC-01A_TUBD1_chr17_57963444_-_VMP1_chr17_57851115_length(amino acids)=234AA_start in transcript=455_stop in transcript=1159 MEIWSTCMLLSKTRFWKQLGIWGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLEHAESAQDFASRAKLAVQKLVQKVGFFGILA CASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAIIKMHIQKIFVIITFSKHIVEQMVAFIGAVPGIGPSLQKPFQEYLEAQRQKLHHK -------------------------------------------------------------- >In-frame_ENST00000394239_ENST00000536180_TCGA-DD-AADC-01A_TUBD1_chr17_57963444_-_VMP1_chr17_57851115_length(transcript)=1252nt_BP=521nt ATCTTTCTGAATAGGAAAAAATATATACACAACAAAACTCTCCGTTTATGGAACATGCGCATTTGTTCTCAGTAAGTTTTTCGTTTTGAA AGTGAGCATGCGCATGGTGAGTAGGTTGGTCCGAAGTTTGAACCGGACAGAAGCGCTGGTCGGCGTCTGGCGGTTGTTTTTAGAGGTAAT ACACCTAGTTTGTGGCTCAGCATGTCAATTGTAACAGTGCAACTTGGTCAGTGTGGCAATCAGATTGGTTTTGAAGTTTTTGATGCTTTG CTTAGTGACTCACACAGTTCCCAGGGACTCTGCTCTATGAGAGAGAATGAGGCATATCAAGCATCTTGCAAAGAAAGATTCTTCAGTGAG GAGGAGAATGGAGTTCCAATTGCCCGGGCTGTTCTTGTTGACATGGAACCCAAAGTTATCAATCAAATGCTGTCAAAGGCTGCCCAGTCT GGCCAATGGAAATATGGTCAACATGCATGCTTCTGTCAAAAACAAGGTTCTGGAAACAACTGGGCATATGGGGTATCGGTACAGCAATCG GAGAGCTGCCTCCATATTTCATGGCCAGAGCAGCTCGCCTCTCAGGTGCTGAACCAGATGATGAAGAGTATCAGGAATTTGAAGAGATGC TGGAACATGCAGAGTCTGCACAAGACTTTGCCTCCCGGGCCAAACTGGCAGTTCAAAAACTAGTACAGAAAGTTGGATTTTTTGGAATTT TGGCCTGTGCTTCAATTCCAAATCCTTTATTTGATCTGGCTGGAATAACGTGTGGACACTTTCTGGTACCTTTTTGGACCTTCTTTGGTG CAACCCTAATTGGAAAAGCAATAATAAAAATGCATATCCAGAAAATTTTTGTTATAATAACATTCAGCAAGCACATAGTGGAGCAAATGG TGGCTTTCATTGGTGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACC ACAAAAGCGAAATGGGCACACCACAGGGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCC TATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAG >In-frame_ENST00000394239_ENST00000536180_TCGA-DD-AADC-01A_TUBD1_chr17_57963444_-_VMP1_chr17_57851115_length(amino acids)=234AA_start in transcript=455_stop in transcript=1159 MEIWSTCMLLSKTRFWKQLGIWGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLEHAESAQDFASRAKLAVQKLVQKVGFFGILA CASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAIIKMHIQKIFVIITFSKHIVEQMVAFIGAVPGIGPSLQKPFQEYLEAQRQKLHHK -------------------------------------------------------------- >In-frame_ENST00000394239_ENST00000545362_TCGA-DD-AADC-01A_TUBD1_chr17_57963444_-_VMP1_chr17_57851115_length(transcript)=1412nt_BP=521nt ATCTTTCTGAATAGGAAAAAATATATACACAACAAAACTCTCCGTTTATGGAACATGCGCATTTGTTCTCAGTAAGTTTTTCGTTTTGAA AGTGAGCATGCGCATGGTGAGTAGGTTGGTCCGAAGTTTGAACCGGACAGAAGCGCTGGTCGGCGTCTGGCGGTTGTTTTTAGAGGTAAT ACACCTAGTTTGTGGCTCAGCATGTCAATTGTAACAGTGCAACTTGGTCAGTGTGGCAATCAGATTGGTTTTGAAGTTTTTGATGCTTTG CTTAGTGACTCACACAGTTCCCAGGGACTCTGCTCTATGAGAGAGAATGAGGCATATCAAGCATCTTGCAAAGAAAGATTCTTCAGTGAG GAGGAGAATGGAGTTCCAATTGCCCGGGCTGTTCTTGTTGACATGGAACCCAAAGTTATCAATCAAATGCTGTCAAAGGCTGCCCAGTCT GGCCAATGGAAATATGGTCAACATGCATGCTTCTGTCAAAAACAAGGTTCTGGAAACAACTGGGCATATGGGGTATCGGTACAGCAATCG GAGAGCTGCCTCCATATTTCATGGCCAGAGCAGCTCGCCTCTCAGGTGCTGAACCAGATGATGAAGAGTATCAGGAATTTGAAGAGATGC TGGAACATGCAGAGTCTGCACAAGACTTTGCCTCCCGGGCCAAACTGGCAGTTCAAAAACTAGTACAGAAAGTTGGATTTTTTGGAATTT TGGCCTGTGCTTCAATTCCAAATCCTTTATTTGATCTGGCTGGAATAACGTGTGGACACTTTCTGGTACCTTTTTGGACCTTCTTTGGTG CAACCCTAATTGGAAAAGCAATAATAAAAATGCATATCCAGAAAATTTTTGTTATAATAACATTCAGCAAGCACATAGTGGAGCAAATGG TGGCTTTCATTGGTGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACC ACAAAAGCGAAATGGGCACACCACAGGGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCC TATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAG TTTTAAACTGCAGAAATTGGAGTGGATGGGTTCTGCCTTAAATTGGGAGGACTCCAAGCCGGGAAGGAAAATTCCCTTTTCCAACCTGTA TCAATTTTTACAACTTTTTTCCTGAAAGCAGTTTAGTCCATACTTTGCACTGACATACTTTTTCCTTCTGTGCTAAGGTAAGGTATCCAC >In-frame_ENST00000394239_ENST00000545362_TCGA-DD-AADC-01A_TUBD1_chr17_57963444_-_VMP1_chr17_57851115_length(amino acids)=234AA_start in transcript=455_stop in transcript=1159 MEIWSTCMLLSKTRFWKQLGIWGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLEHAESAQDFASRAKLAVQKLVQKVGFFGILA CASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAIIKMHIQKIFVIITFSKHIVEQMVAFIGAVPGIGPSLQKPFQEYLEAQRQKLHHK -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for TUBD1-VMP1 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for TUBD1-VMP1 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for TUBD1-VMP1 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |