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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:USP47-RRAS2 (FusionGDB2 ID:96851) |
Fusion Gene Summary for USP47-RRAS2 |
Fusion gene summary |
Fusion gene information | Fusion gene name: USP47-RRAS2 | Fusion gene ID: 96851 | Hgene | Tgene | Gene symbol | USP47 | RRAS2 | Gene ID | 55031 | 22800 |
Gene name | ubiquitin specific peptidase 47 | RAS related 2 | |
Synonyms | TRFP | NS12|TC21 | |
Cytomap | 11p15.3 | 11p15.2 | |
Type of gene | protein-coding | protein-coding | |
Description | ubiquitin carboxyl-terminal hydrolase 47Trf (TATA binding protein-related factor)-proximal homologdeubiquitinating enzyme 47ubiquitin thioesterase 47ubiquitin thiolesterase 47ubiquitin-specific-processing protease 47 | ras-related protein R-Ras2ras-like protein TC21related RAS viral (r-ras) oncogene homolog 2teratocarcinoma oncogene | |
Modification date | 20200313 | 20200315 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000339865, ENST00000539466, ENST00000527733, ENST00000399455, ENST00000305481, | ENST00000545643, ENST00000537760, ENST00000414023, ENST00000529237, ENST00000256196, ENST00000534746, ENST00000526063, ENST00000532814, | |
Fusion gene scores | * DoF score | 9 X 6 X 5=270 | 5 X 2 X 5=50 |
# samples | 9 | 5 | |
** MAII score | log2(9/270*10)=-1.58496250072116 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(5/50*10)=0 | |
Context | PubMed: USP47 [Title/Abstract] AND RRAS2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | USP47(11863771)-RRAS2(14317401), # samples:4 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | USP47 | GO:0035520 | monoubiquitinated protein deubiquitination | 21362556 |
Fusion gene breakpoints across USP47 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across RRAS2 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | SKCM | TCGA-EB-A82C-01A | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
ChimerDB4 | SKCM | TCGA-EB-A82C | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
ChimerDB4 | SKCM | TCGA-EB-A82C-01A | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
ChimerDB4 | SKCM | TCGA-EB-A82C-01A | USP47 | chr11 | 11863771 | - | RRAS2 | chr11 | 14317401 | - |
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Fusion Gene ORF analysis for USP47-RRAS2 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000339865 | ENST00000545643 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
In-frame | ENST00000339865 | ENST00000537760 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
In-frame | ENST00000339865 | ENST00000414023 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
5CDS-5UTR | ENST00000339865 | ENST00000529237 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
5CDS-5UTR | ENST00000339865 | ENST00000256196 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
5CDS-5UTR | ENST00000339865 | ENST00000534746 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
5CDS-5UTR | ENST00000339865 | ENST00000526063 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
5CDS-5UTR | ENST00000339865 | ENST00000532814 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
5UTR-3CDS | ENST00000539466 | ENST00000545643 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
5UTR-3CDS | ENST00000539466 | ENST00000537760 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
5UTR-3CDS | ENST00000539466 | ENST00000414023 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
5UTR-5UTR | ENST00000539466 | ENST00000529237 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
5UTR-5UTR | ENST00000539466 | ENST00000256196 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
5UTR-5UTR | ENST00000539466 | ENST00000534746 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
5UTR-5UTR | ENST00000539466 | ENST00000526063 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
5UTR-5UTR | ENST00000539466 | ENST00000532814 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
In-frame | ENST00000527733 | ENST00000545643 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
In-frame | ENST00000527733 | ENST00000537760 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
In-frame | ENST00000527733 | ENST00000414023 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
5CDS-5UTR | ENST00000527733 | ENST00000529237 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
5CDS-5UTR | ENST00000527733 | ENST00000256196 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
5CDS-5UTR | ENST00000527733 | ENST00000534746 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
5CDS-5UTR | ENST00000527733 | ENST00000526063 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
5CDS-5UTR | ENST00000527733 | ENST00000532814 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
In-frame | ENST00000399455 | ENST00000545643 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
In-frame | ENST00000399455 | ENST00000537760 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
In-frame | ENST00000399455 | ENST00000414023 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
5CDS-5UTR | ENST00000399455 | ENST00000529237 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
5CDS-5UTR | ENST00000399455 | ENST00000256196 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
5CDS-5UTR | ENST00000399455 | ENST00000534746 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
5CDS-5UTR | ENST00000399455 | ENST00000526063 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
5CDS-5UTR | ENST00000399455 | ENST00000532814 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
intron-3CDS | ENST00000305481 | ENST00000545643 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
intron-3CDS | ENST00000305481 | ENST00000537760 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
intron-3CDS | ENST00000305481 | ENST00000414023 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
intron-5UTR | ENST00000305481 | ENST00000529237 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
intron-5UTR | ENST00000305481 | ENST00000256196 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
intron-5UTR | ENST00000305481 | ENST00000534746 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
intron-5UTR | ENST00000305481 | ENST00000526063 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
intron-5UTR | ENST00000305481 | ENST00000532814 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000339865 | USP47 | chr11 | 11863771 | + | ENST00000545643 | RRAS2 | chr11 | 14317401 | - | 2720 | 802 | 842 | 417 | 141 |
ENST00000339865 | USP47 | chr11 | 11863771 | + | ENST00000537760 | RRAS2 | chr11 | 14317401 | - | 2720 | 802 | 763 | 1308 | 181 |
ENST00000339865 | USP47 | chr11 | 11863771 | + | ENST00000414023 | RRAS2 | chr11 | 14317401 | - | 2686 | 802 | 674 | 1312 | 212 |
ENST00000527733 | USP47 | chr11 | 11863771 | + | ENST00000545643 | RRAS2 | chr11 | 14317401 | - | 2168 | 250 | 2133 | 1903 | 76 |
ENST00000527733 | USP47 | chr11 | 11863771 | + | ENST00000537760 | RRAS2 | chr11 | 14317401 | - | 2168 | 250 | 211 | 756 | 181 |
ENST00000527733 | USP47 | chr11 | 11863771 | + | ENST00000414023 | RRAS2 | chr11 | 14317401 | - | 2134 | 250 | 122 | 760 | 212 |
ENST00000399455 | USP47 | chr11 | 11863771 | + | ENST00000545643 | RRAS2 | chr11 | 14317401 | - | 2077 | 159 | 2042 | 1812 | 76 |
ENST00000399455 | USP47 | chr11 | 11863771 | + | ENST00000537760 | RRAS2 | chr11 | 14317401 | - | 2077 | 159 | 120 | 665 | 181 |
ENST00000399455 | USP47 | chr11 | 11863771 | + | ENST00000414023 | RRAS2 | chr11 | 14317401 | - | 2043 | 159 | 31 | 669 | 212 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000339865 | ENST00000545643 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - | 0.9207496 | 0.07925042 |
ENST00000339865 | ENST00000537760 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - | 0.000604699 | 0.99939525 |
ENST00000339865 | ENST00000414023 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - | 0.009779502 | 0.9902204 |
ENST00000527733 | ENST00000545643 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - | 0.056678437 | 0.9433216 |
ENST00000527733 | ENST00000537760 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - | 0.000466121 | 0.9995339 |
ENST00000527733 | ENST00000414023 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - | 0.003850453 | 0.99614954 |
ENST00000399455 | ENST00000545643 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - | 0.12625825 | 0.8737418 |
ENST00000399455 | ENST00000537760 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - | 0.000330296 | 0.9996697 |
ENST00000399455 | ENST00000414023 | USP47 | chr11 | 11863771 | + | RRAS2 | chr11 | 14317401 | - | 0.005425469 | 0.9945746 |
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Fusion Genomic Features for USP47-RRAS2 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for USP47-RRAS2 |
Go to FGviewer for the breakpoints of chr11:11863771-chr11:14317401 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | . |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000256196 | 0 | 6 | 43_51 | 36.0 | 205.0 | Motif | Note=Effector region | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000414023 | -1 | 5 | 43_51 | 0 | 128.0 | Motif | Note=Effector region | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000526063 | 0 | 6 | 43_51 | 0 | 128.0 | Motif | Note=Effector region | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000529237 | 0 | 6 | 43_51 | 0 | 128.0 | Motif | Note=Effector region | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000532814 | 0 | 6 | 43_51 | 0 | 128.0 | Motif | Note=Effector region | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000534746 | 0 | 6 | 43_51 | 0 | 128.0 | Motif | Note=Effector region | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000537760 | 0 | 6 | 43_51 | 1.0 | 170.0 | Motif | Note=Effector region | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000256196 | 0 | 6 | 127_130 | 36.0 | 205.0 | Nucleotide binding | GTP | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000256196 | 0 | 6 | 157_159 | 36.0 | 205.0 | Nucleotide binding | GTP | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000256196 | 0 | 6 | 68_72 | 36.0 | 205.0 | Nucleotide binding | GTP | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000414023 | -1 | 5 | 127_130 | 0 | 128.0 | Nucleotide binding | GTP | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000414023 | -1 | 5 | 157_159 | 0 | 128.0 | Nucleotide binding | GTP | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000414023 | -1 | 5 | 21_29 | 0 | 128.0 | Nucleotide binding | GTP | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000414023 | -1 | 5 | 68_72 | 0 | 128.0 | Nucleotide binding | GTP | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000526063 | 0 | 6 | 127_130 | 0 | 128.0 | Nucleotide binding | GTP | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000526063 | 0 | 6 | 157_159 | 0 | 128.0 | Nucleotide binding | GTP | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000526063 | 0 | 6 | 21_29 | 0 | 128.0 | Nucleotide binding | GTP | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000526063 | 0 | 6 | 68_72 | 0 | 128.0 | Nucleotide binding | GTP | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000529237 | 0 | 6 | 127_130 | 0 | 128.0 | Nucleotide binding | GTP | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000529237 | 0 | 6 | 157_159 | 0 | 128.0 | Nucleotide binding | GTP | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000529237 | 0 | 6 | 21_29 | 0 | 128.0 | Nucleotide binding | GTP | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000529237 | 0 | 6 | 68_72 | 0 | 128.0 | Nucleotide binding | GTP | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000532814 | 0 | 6 | 127_130 | 0 | 128.0 | Nucleotide binding | GTP | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000532814 | 0 | 6 | 157_159 | 0 | 128.0 | Nucleotide binding | GTP | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000532814 | 0 | 6 | 21_29 | 0 | 128.0 | Nucleotide binding | GTP | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000532814 | 0 | 6 | 68_72 | 0 | 128.0 | Nucleotide binding | GTP | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000534746 | 0 | 6 | 127_130 | 0 | 128.0 | Nucleotide binding | GTP | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000534746 | 0 | 6 | 157_159 | 0 | 128.0 | Nucleotide binding | GTP | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000534746 | 0 | 6 | 21_29 | 0 | 128.0 | Nucleotide binding | GTP | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000534746 | 0 | 6 | 68_72 | 0 | 128.0 | Nucleotide binding | GTP | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000537760 | 0 | 6 | 127_130 | 1.0 | 170.0 | Nucleotide binding | GTP | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000537760 | 0 | 6 | 157_159 | 1.0 | 170.0 | Nucleotide binding | GTP | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000537760 | 0 | 6 | 21_29 | 1.0 | 170.0 | Nucleotide binding | GTP | |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000537760 | 0 | 6 | 68_72 | 1.0 | 170.0 | Nucleotide binding | GTP |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | USP47 | chr11:11863771 | chr11:14317401 | ENST00000339865 | + | 1 | 27 | 188_564 | 13.0 | 1288.0 | Domain | Note=USP |
Hgene | USP47 | chr11:11863771 | chr11:14317401 | ENST00000399455 | + | 1 | 29 | 188_564 | 13.0 | 1376.0 | Domain | Note=USP |
Hgene | USP47 | chr11:11863771 | chr11:14317401 | ENST00000539466 | + | 1 | 28 | 188_564 | 0 | 158.0 | Domain | Note=USP |
Tgene | RRAS2 | chr11:11863771 | chr11:14317401 | ENST00000256196 | 0 | 6 | 21_29 | 36.0 | 205.0 | Nucleotide binding | GTP |
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Fusion Gene Sequence for USP47-RRAS2 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000339865_ENST00000545643_TCGA-EB-A82C-01A_USP47_chr11_11863771_+_RRAS2_chr11_14317401_length(transcript)=2720nt_BP=802nt AGAGGGGAAAAGAACGTCAGGAGAGTGAACGGGAGCAAATAAAACGCTGTCCATTCTGACTGGAAGGGCCAGAGCCGTGTCTAAGGGCGG GGGCCGGGAGGTGGCCCGCGGTGGTGTCTCTACCAGGACGAGGCCTGGGGTATCTGAAGAGGGGATGACGTCCAGGCGCTTTGCTAAAGG GAAGCCAGAAGGGTATGAGTTGCTAGGGTCAGAGATGGGGCTTTCGGCTCGAGTCTTTCCCTGCAGGGCAGAGAGTCCGAAGAGCCCGAG AAGGCAGGGAGGACAGTGGGCCTGGTCCTTCCCCGGCCGGCAGAGGGAGTCCCGAGATGGAACGTCCAGCTCTCCTCTAACGAAAAGCGT TTGCATGGCTGTCTCGCCAATTCTGTACCTCCCGGGGCTGAGGAAGAGCCGAGGTGACTAGAAGCTAGCGACAAGTGCCGGCCACCTCCG ACGCCAGGCGCCGGGCTTGGAGCCCGACGGGCCGAATTCTCGCGAGAGCGGCCGCCGCCATTTTTCCATTGATTGCAGCGGGCTGGGGGA GGGGCCGACGACGAAGGCGGCTGTGGTAGCGGCGGCGGCGGCGGCGGAGCCCTGGGTCGGTGTCTGCGCGCTGGTGTCTGAGGCCCAGGC TGAGGCCTCCGCTATTGCTGGAGCGCAGGCGGCGGAGAGGATGACTGCCGCTGCCATTCTCTCTTGAGCTAGCGAGCCGCCGCCACCCTC CACCCTCCCCCGGCAGGGCGGAGAGGAGCGGCCGGAGTCAGCGATGGTGCCCGGCGAGGAGAACCAACTGGTCCCGAAAGAGGAAATTTC AAGAGCAGGAATGTCCTCCTTCACCAGAACCAACACGGAAAGAAAAAGACAAGAAAGGCTGCCATTGTGTCATTTTCTAGAATCCCTTCA GTTTTAGCTACCAACGGCCAGGAAAAGCCCTCATCTTCTCTTTCTCTCCTCAGTTTACATCTTGTTGGTACCTTTCTAGCCTTAGACAAA TGATCACCATGTTAGCCTTAGACGAAGAAGCTGGCTAGTCCTTTCTGTGAAGCTAATACAATGGTCATTTCCAGACAAATTTAAAGGAAA CACTAAGGCTGCTTCAAAGATTATCTGATTCCTTTAAAATATATGTCTATATACACAGACATGCTCTTTTTTTAAGTGCTTACATTTTAA TAGAGATGAATCAGTTTTGGAATCTAAGCTGTTTGCCAAGCTGAAGCTACAGGTTGTGAAATAATTTTTAACTTTTGGAATCATACTGCC TACTGTTACTCTAAATAGAAATATAGGGTTTTTTTTAATGTGAATTTTTGCCTATCTTTAAACATTTCAATGTCAGCCTTTGTTAACCTT AAATACACTGAATTGAATCTACAAAAGTGAACCATCTCAGACCTTTACTGATACTACAACTTTTGTTTTCTGATGGCCAAAATACCAAAT GCCTGTTGTATTTATGGATTAAAAACTGCTTATAAAACCCTGTGTTACTACTCCTACTCTTGGAGATGATAATATTCTATGTGGTCAAAT ATTTGGACTCATTTAGGACTTAGATATTTCAGTGTACTTGATTTTTTAATTTAACTCTTTTTCACAGCCACGCTAAGGGTAAAAAGGAAT AATTTCCTTCTGTCTTCCTTTTCAAGTATTTCTGGGTAAGGGATTCAAAAAACTAAAACTGTTTTTGTTTGTAATATAAAATATGGAATT GATCTTTCCAGGGTCAGAGATGATTAATGTTTTTGCTATATACTTTTATACATTATTTTCTTATCAAACTAGTTAACAAGTATTTTTATA TGTTTGTAAGCAGATATGCTTTCATAGCATACCTTGTGTATATGTAAAGATAAGTATTTAATTCTCACTGTTCACTTTTAACTGACAAAG AAAAACAAGTGGAAACTACAGAAACTGTGGTAGAACTTTTACTTGCTGGTCTGGTCTTGGTTGTACCCATCTTTGGCCAGTCACATAACT ACTCAAGAAACCTTCCCAATAGAGTACAACAGGATGAGACTCTGAAATCACTTTCAGTATTCCCTGCTAGATATTGATTGTTATTTCAAG TATTAAGTGTAAGCTTTTAATGGATAATTAGTATAACTGTGGATGGCATCTGATTTTGTTTTTAATTCTGTGGATTGTGTTTAAGCAATT CAATAGTATGTTCCTGATTTTGAGATGCTAAGTGGTATTGCACAGTTGTCACTTTATCAAGTGTGTACAACAGTCCCATGAAGTTTATAG AGCATACCCTTGTATAGCTTCAGGTGCTAGAATTAAAATTGATCTGTTATCGTAACACAGGAAGAAGGACAACAGTTAGCACGGCAGCTT AAGGTAACATACATGGAGGCATCAGCAAAGATTAGGATGAATGTAGATCAAGCTTTCCATGAACTTGTCCGGGTTATCAGTTTTGAAGAA ATCTATAAGTTTCAAAGACAGATTCTCAGAGTAAAGGATCGTGATGAGTTCCCAATGATTTTAATTGGTAATAAAGCAGATCTGGATCAT CAAAGACAGTTTTGGATACAGCAGGACAAGAAGAGTTTGGAGCCATGAGAGAACAGTATATGAGGACTGGCGAAGGCTTCCTGTTGGTCT TTTCAGTCACAGATAGAGGCAGTCCTATTTTGTAACGGATTATGATCCAACCATTGAAGATTCTTACACAAAGCAGTGTGTGATAGATGA >In-frame_ENST00000339865_ENST00000545643_TCGA-EB-A82C-01A_USP47_chr11_11863771_+_RRAS2_chr11_14317401_length(amino acids)=141AA_start in transcript=842_stop in transcript=417 MVLVKEDIPALEISSFGTSWFSSPGTIADSGRSSPPCRGRVEGGGGSLAQERMAAAVILSAACAPAIAEASAWASDTSAQTPTQGSAAAA -------------------------------------------------------------- >In-frame_ENST00000339865_ENST00000537760_TCGA-EB-A82C-01A_USP47_chr11_11863771_+_RRAS2_chr11_14317401_length(transcript)=2720nt_BP=802nt AGAGGGGAAAAGAACGTCAGGAGAGTGAACGGGAGCAAATAAAACGCTGTCCATTCTGACTGGAAGGGCCAGAGCCGTGTCTAAGGGCGG GGGCCGGGAGGTGGCCCGCGGTGGTGTCTCTACCAGGACGAGGCCTGGGGTATCTGAAGAGGGGATGACGTCCAGGCGCTTTGCTAAAGG GAAGCCAGAAGGGTATGAGTTGCTAGGGTCAGAGATGGGGCTTTCGGCTCGAGTCTTTCCCTGCAGGGCAGAGAGTCCGAAGAGCCCGAG AAGGCAGGGAGGACAGTGGGCCTGGTCCTTCCCCGGCCGGCAGAGGGAGTCCCGAGATGGAACGTCCAGCTCTCCTCTAACGAAAAGCGT TTGCATGGCTGTCTCGCCAATTCTGTACCTCCCGGGGCTGAGGAAGAGCCGAGGTGACTAGAAGCTAGCGACAAGTGCCGGCCACCTCCG ACGCCAGGCGCCGGGCTTGGAGCCCGACGGGCCGAATTCTCGCGAGAGCGGCCGCCGCCATTTTTCCATTGATTGCAGCGGGCTGGGGGA GGGGCCGACGACGAAGGCGGCTGTGGTAGCGGCGGCGGCGGCGGCGGAGCCCTGGGTCGGTGTCTGCGCGCTGGTGTCTGAGGCCCAGGC TGAGGCCTCCGCTATTGCTGGAGCGCAGGCGGCGGAGAGGATGACTGCCGCTGCCATTCTCTCTTGAGCTAGCGAGCCGCCGCCACCCTC CACCCTCCCCCGGCAGGGCGGAGAGGAGCGGCCGGAGTCAGCGATGGTGCCCGGCGAGGAGAACCAACTGGTCCCGAAAGAGTCCTATTT TGTAACGGATTATGATCCAACCATTGAAGATTCTTACACAAAGCAGTGTGTGATAGATGACAGAGCAGCCCGGCTAGATATTTTGGATAC AGCAGGACAAGAAGAGTTTGGAGCCATGAGAGAACAGTATATGAGGACTGGCGAAGGCTTCCTGTTGGTCTTTTCAGTCACAGATAGAGG CAGTTTTGAAGAAATCTATAAGTTTCAAAGACAGATTCTCAGAGTAAAGGATCGTGATGAGTTCCCAATGATTTTAATTGGTAATAAAGC AGATCTGGATCATCAAAGACAGGTAACACAGGAAGAAGGACAACAGTTAGCACGGCAGCTTAAGGTAACATACATGGAGGCATCAGCAAA GATTAGGATGAATGTAGATCAAGCTTTCCATGAACTTGTCCGGGTTATCAGGAAATTTCAAGAGCAGGAATGTCCTCCTTCACCAGAACC AACACGGAAAGAAAAAGACAAGAAAGGCTGCCATTGTGTCATTTTCTAGAATCCCTTCAGTTTTAGCTACCAACGGCCAGGAAAAGCCCT CATCTTCTCTTTCTCTCCTCAGTTTACATCTTGTTGGTACCTTTCTAGCCTTAGACAAATGATCACCATGTTAGCCTTAGACGAAGAAGC TGGCTAGTCCTTTCTGTGAAGCTAATACAATGGTCATTTCCAGACAAATTTAAAGGAAACACTAAGGCTGCTTCAAAGATTATCTGATTC CTTTAAAATATATGTCTATATACACAGACATGCTCTTTTTTTAAGTGCTTACATTTTAATAGAGATGAATCAGTTTTGGAATCTAAGCTG TTTGCCAAGCTGAAGCTACAGGTTGTGAAATAATTTTTAACTTTTGGAATCATACTGCCTACTGTTACTCTAAATAGAAATATAGGGTTT TTTTTAATGTGAATTTTTGCCTATCTTTAAACATTTCAATGTCAGCCTTTGTTAACCTTAAATACACTGAATTGAATCTACAAAAGTGAA CCATCTCAGACCTTTACTGATACTACAACTTTTGTTTTCTGATGGCCAAAATACCAAATGCCTGTTGTATTTATGGATTAAAAACTGCTT ATAAAACCCTGTGTTACTACTCCTACTCTTGGAGATGATAATATTCTATGTGGTCAAATATTTGGACTCATTTAGGACTTAGATATTTCA GTGTACTTGATTTTTTAATTTAACTCTTTTTCACAGCCACGCTAAGGGTAAAAAGGAATAATTTCCTTCTGTCTTCCTTTTCAAGTATTT CTGGGTAAGGGATTCAAAAAACTAAAACTGTTTTTGTTTGTAATATAAAATATGGAATTGATCTTTCCAGGGTCAGAGATGATTAATGTT TTTGCTATATACTTTTATACATTATTTTCTTATCAAACTAGTTAACAAGTATTTTTATATGTTTGTAAGCAGATATGCTTTCATAGCATA CCTTGTGTATATGTAAAGATAAGTATTTAATTCTCACTGTTCACTTTTAACTGACAAAGAAAAACAAGTGGAAACTACAGAAACTGTGGT AGAACTTTTACTTGCTGGTCTGGTCTTGGTTGTACCCATCTTTGGCCAGTCACATAACTACTCAAGAAACCTTCCCAATAGAGTACAACA GGATGAGACTCTGAAATCACTTTCAGTATTCCCTGCTAGATATTGATTGTTATTTCAAGTATTAAGTGTAAGCTTTTAATGGATAATTAG TATAACTGTGGATGGCATCTGATTTTGTTTTTAATTCTGTGGATTGTGTTTAAGCAATTCAATAGTATGTTCCTGATTTTGAGATGCTAA GTGGTATTGCACAGTTGTCACTTTATCAAGTGTGTACAACAGTCCCATGAAGTTTATAGAGCATACCCTTGTATAGCTTCAGGTGCTAGA >In-frame_ENST00000339865_ENST00000537760_TCGA-EB-A82C-01A_USP47_chr11_11863771_+_RRAS2_chr11_14317401_length(amino acids)=181AA_start in transcript=763_stop in transcript=1308 MVPGEENQLVPKESYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILR VKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKFQEQECPPSPEPTRKEKDKKGCHCVI -------------------------------------------------------------- >In-frame_ENST00000339865_ENST00000414023_TCGA-EB-A82C-01A_USP47_chr11_11863771_+_RRAS2_chr11_14317401_length(transcript)=2686nt_BP=802nt AGAGGGGAAAAGAACGTCAGGAGAGTGAACGGGAGCAAATAAAACGCTGTCCATTCTGACTGGAAGGGCCAGAGCCGTGTCTAAGGGCGG GGGCCGGGAGGTGGCCCGCGGTGGTGTCTCTACCAGGACGAGGCCTGGGGTATCTGAAGAGGGGATGACGTCCAGGCGCTTTGCTAAAGG GAAGCCAGAAGGGTATGAGTTGCTAGGGTCAGAGATGGGGCTTTCGGCTCGAGTCTTTCCCTGCAGGGCAGAGAGTCCGAAGAGCCCGAG AAGGCAGGGAGGACAGTGGGCCTGGTCCTTCCCCGGCCGGCAGAGGGAGTCCCGAGATGGAACGTCCAGCTCTCCTCTAACGAAAAGCGT TTGCATGGCTGTCTCGCCAATTCTGTACCTCCCGGGGCTGAGGAAGAGCCGAGGTGACTAGAAGCTAGCGACAAGTGCCGGCCACCTCCG ACGCCAGGCGCCGGGCTTGGAGCCCGACGGGCCGAATTCTCGCGAGAGCGGCCGCCGCCATTTTTCCATTGATTGCAGCGGGCTGGGGGA GGGGCCGACGACGAAGGCGGCTGTGGTAGCGGCGGCGGCGGCGGCGGAGCCCTGGGTCGGTGTCTGCGCGCTGGTGTCTGAGGCCCAGGC TGAGGCCTCCGCTATTGCTGGAGCGCAGGCGGCGGAGAGGATGACTGCCGCTGCCATTCTCTCTTGAGCTAGCGAGCCGCCGCCACCCTC CACCCTCCCCCGGCAGGGCGGAGAGGAGCGGCCGGAGTCAGCGATGGTGCCCGGCGAGGAGAACCAACTGGTCCCGAAAGAGGCAGTCCT ATTTTGTAACGGATTATGATCCAACCATTGAAGATTCTTACACAAAGCAGTGTGTGATAGATGACAGAGCAGCCCGGCTAGATATTTTGG ATACAGCAGGACAAGAAGAGTTTGGAGCCATGAGAGAACAGTATATGAGGACTGGCGAAGGCTTCCTGTTGGTCTTTTCAGTCACAGATA GAGGCAGTTTTGAAGAAATCTATAAGTTTCAAAGACAGATTCTCAGAGTAAAGGATCGTGATGAGTTCCCAATGATTTTAATTGGTAATA AAGCAGATCTGGATCATCAAAGACAGGTAACACAGGAAGAAGGACAACAGTTAGCACGGCAGCTTAAGGTAACATACATGGAGGCATCAG CAAAGATTAGGATGAATGTAGATCAAGCTTTCCATGAACTTGTCCGGGTTATCAGGAAATTTCAAGAGCAGGAATGTCCTCCTTCACCAG AACCAACACGGAAAGAAAAAGACAAGAAAGGCTGCCATTGTGTCATTTTCTAGAATCCCTTCAGTTTTAGCTACCAACGGCCAGGAAAAG CCCTCATCTTCTCTTTCTCTCCTCAGTTTACATCTTGTTGGTACCTTTCTAGCCTTAGACAAATGATCACCATGTTAGCCTTAGACGAAG AAGCTGGCTAGTCCTTTCTGTGAAGCTAATACAATGGTCATTTCCAGACAAATTTAAAGGAAACACTAAGGCTGCTTCAAAGATTATCTG ATTCCTTTAAAATATATGTCTATATACACAGACATGCTCTTTTTTTAAGTGCTTACATTTTAATAGAGATGAATCAGTTTTGGAATCTAA GCTGTTTGCCAAGCTGAAGCTACAGGTTGTGAAATAATTTTTAACTTTTGGAATCATACTGCCTACTGTTACTCTAAATAGAAATATAGG GTTTTTTTTAATGTGAATTTTTGCCTATCTTTAAACATTTCAATGTCAGCCTTTGTTAACCTTAAATACACTGAATTGAATCTACAAAAG TGAACCATCTCAGACCTTTACTGATACTACAACTTTTGTTTTCTGATGGCCAAAATACCAAATGCCTGTTGTATTTATGGATTAAAAACT GCTTATAAAACCCTGTGTTACTACTCCTACTCTTGGAGATGATAATATTCTATGTGGTCAAATATTTGGACTCATTTAGGACTTAGATAT TTCAGTGTACTTGATTTTTTAATTTAACTCTTTTTCACAGCCACGCTAAGGGTAAAAAGGAATAATTTCCTTCTGTCTTCCTTTTCAAGT ATTTCTGGGTAAGGGATTCAAAAAACTAAAACTGTTTTTGTTTGTAATATAAAATATGGAATTGATCTTTCCAGGGTCAGAGATGATTAA TGTTTTTGCTATATACTTTTATACATTATTTTCTTATCAAACTAGTTAACAAGTATTTTTATATGTTTGTAAGCAGATATGCTTTCATAG CATACCTTGTGTATATGTAAAGATAAGTATTTAATTCTCACTGTTCACTTTTAACTGACAAAGAAAAACAAGTGGAAACTACAGAAACTG TGGTAGAACTTTTACTTGCTGGTCTGGTCTTGGTTGTACCCATCTTTGGCCAGTCACATAACTACTCAAGAAACCTTCCCAATAGAGTAC AACAGGATGAGACTCTGAAATCACTTTCAGTATTCCCTGCTAGATATTGATTGTTATTTCAAGTATTAAGTGTAAGCTTTTAATGGATAA TTAGTATAACTGTGGATGGCATCTGATTTTGTTTTTAATTCTGTGGATTGTGTTTAAGCAATTCAATAGTATGTTCCTGATTTTGAGATG >In-frame_ENST00000339865_ENST00000414023_TCGA-EB-A82C-01A_USP47_chr11_11863771_+_RRAS2_chr11_14317401_length(amino acids)=212AA_start in transcript=674_stop in transcript=1312 MPLPFSLELASRRHPPPSPGRAERSGRSQRWCPARRTNWSRKRQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQY MRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELV -------------------------------------------------------------- >In-frame_ENST00000527733_ENST00000545643_TCGA-EB-A82C-01A_USP47_chr11_11863771_+_RRAS2_chr11_14317401_length(transcript)=2168nt_BP=250nt GAAGGCGGCTGTGGTAGCGGCGGCGGCGGCGGCGGAGCCCTGGGTCGGTGTCTGCGCGCTGGTGTCTGAGGCCCAGGCTGAGGCCTCCGC TATTGCTGGAGCGCAGGCGGCGGAGAGGATGACTGCCGCTGCCATTCTCTCTTGAGCTAGCGAGCCGCCGCCACCCTCCACCCTCCCCCG GCAGGGCGGAGAGGAGCGGCCGGAGTCAGCGATGGTGCCCGGCGAGGAGAACCAACTGGTCCCGAAAGAGGAAATTTCAAGAGCAGGAAT GTCCTCCTTCACCAGAACCAACACGGAAAGAAAAAGACAAGAAAGGCTGCCATTGTGTCATTTTCTAGAATCCCTTCAGTTTTAGCTACC AACGGCCAGGAAAAGCCCTCATCTTCTCTTTCTCTCCTCAGTTTACATCTTGTTGGTACCTTTCTAGCCTTAGACAAATGATCACCATGT TAGCCTTAGACGAAGAAGCTGGCTAGTCCTTTCTGTGAAGCTAATACAATGGTCATTTCCAGACAAATTTAAAGGAAACACTAAGGCTGC TTCAAAGATTATCTGATTCCTTTAAAATATATGTCTATATACACAGACATGCTCTTTTTTTAAGTGCTTACATTTTAATAGAGATGAATC AGTTTTGGAATCTAAGCTGTTTGCCAAGCTGAAGCTACAGGTTGTGAAATAATTTTTAACTTTTGGAATCATACTGCCTACTGTTACTCT AAATAGAAATATAGGGTTTTTTTTAATGTGAATTTTTGCCTATCTTTAAACATTTCAATGTCAGCCTTTGTTAACCTTAAATACACTGAA TTGAATCTACAAAAGTGAACCATCTCAGACCTTTACTGATACTACAACTTTTGTTTTCTGATGGCCAAAATACCAAATGCCTGTTGTATT TATGGATTAAAAACTGCTTATAAAACCCTGTGTTACTACTCCTACTCTTGGAGATGATAATATTCTATGTGGTCAAATATTTGGACTCAT TTAGGACTTAGATATTTCAGTGTACTTGATTTTTTAATTTAACTCTTTTTCACAGCCACGCTAAGGGTAAAAAGGAATAATTTCCTTCTG TCTTCCTTTTCAAGTATTTCTGGGTAAGGGATTCAAAAAACTAAAACTGTTTTTGTTTGTAATATAAAATATGGAATTGATCTTTCCAGG GTCAGAGATGATTAATGTTTTTGCTATATACTTTTATACATTATTTTCTTATCAAACTAGTTAACAAGTATTTTTATATGTTTGTAAGCA GATATGCTTTCATAGCATACCTTGTGTATATGTAAAGATAAGTATTTAATTCTCACTGTTCACTTTTAACTGACAAAGAAAAACAAGTGG AAACTACAGAAACTGTGGTAGAACTTTTACTTGCTGGTCTGGTCTTGGTTGTACCCATCTTTGGCCAGTCACATAACTACTCAAGAAACC TTCCCAATAGAGTACAACAGGATGAGACTCTGAAATCACTTTCAGTATTCCCTGCTAGATATTGATTGTTATTTCAAGTATTAAGTGTAA GCTTTTAATGGATAATTAGTATAACTGTGGATGGCATCTGATTTTGTTTTTAATTCTGTGGATTGTGTTTAAGCAATTCAATAGTATGTT CCTGATTTTGAGATGCTAAGTGGTATTGCACAGTTGTCACTTTATCAAGTGTGTACAACAGTCCCATGAAGTTTATAGAGCATACCCTTG TATAGCTTCAGGTGCTAGAATTAAAATTGATCTGTTATCGTAACACAGGAAGAAGGACAACAGTTAGCACGGCAGCTTAAGGTAACATAC ATGGAGGCATCAGCAAAGATTAGGATGAATGTAGATCAAGCTTTCCATGAACTTGTCCGGGTTATCAGTTTTGAAGAAATCTATAAGTTT CAAAGACAGATTCTCAGAGTAAAGGATCGTGATGAGTTCCCAATGATTTTAATTGGTAATAAAGCAGATCTGGATCATCAAAGACAGTTT TGGATACAGCAGGACAAGAAGAGTTTGGAGCCATGAGAGAACAGTATATGAGGACTGGCGAAGGCTTCCTGTTGGTCTTTTCAGTCACAG ATAGAGGCAGTCCTATTTTGTAACGGATTATGATCCAACCATTGAAGATTCTTACACAAAGCAGTGTGTGATAGATGACAGAGCAGCCCG >In-frame_ENST00000527733_ENST00000545643_TCGA-EB-A82C-01A_USP47_chr11_11863771_+_RRAS2_chr11_14317401_length(amino acids)=76AA_start in transcript=2133_stop in transcript=1903 -------------------------------------------------------------- >In-frame_ENST00000527733_ENST00000537760_TCGA-EB-A82C-01A_USP47_chr11_11863771_+_RRAS2_chr11_14317401_length(transcript)=2168nt_BP=250nt GAAGGCGGCTGTGGTAGCGGCGGCGGCGGCGGCGGAGCCCTGGGTCGGTGTCTGCGCGCTGGTGTCTGAGGCCCAGGCTGAGGCCTCCGC TATTGCTGGAGCGCAGGCGGCGGAGAGGATGACTGCCGCTGCCATTCTCTCTTGAGCTAGCGAGCCGCCGCCACCCTCCACCCTCCCCCG GCAGGGCGGAGAGGAGCGGCCGGAGTCAGCGATGGTGCCCGGCGAGGAGAACCAACTGGTCCCGAAAGAGTCCTATTTTGTAACGGATTA TGATCCAACCATTGAAGATTCTTACACAAAGCAGTGTGTGATAGATGACAGAGCAGCCCGGCTAGATATTTTGGATACAGCAGGACAAGA AGAGTTTGGAGCCATGAGAGAACAGTATATGAGGACTGGCGAAGGCTTCCTGTTGGTCTTTTCAGTCACAGATAGAGGCAGTTTTGAAGA AATCTATAAGTTTCAAAGACAGATTCTCAGAGTAAAGGATCGTGATGAGTTCCCAATGATTTTAATTGGTAATAAAGCAGATCTGGATCA TCAAAGACAGGTAACACAGGAAGAAGGACAACAGTTAGCACGGCAGCTTAAGGTAACATACATGGAGGCATCAGCAAAGATTAGGATGAA TGTAGATCAAGCTTTCCATGAACTTGTCCGGGTTATCAGGAAATTTCAAGAGCAGGAATGTCCTCCTTCACCAGAACCAACACGGAAAGA AAAAGACAAGAAAGGCTGCCATTGTGTCATTTTCTAGAATCCCTTCAGTTTTAGCTACCAACGGCCAGGAAAAGCCCTCATCTTCTCTTT CTCTCCTCAGTTTACATCTTGTTGGTACCTTTCTAGCCTTAGACAAATGATCACCATGTTAGCCTTAGACGAAGAAGCTGGCTAGTCCTT TCTGTGAAGCTAATACAATGGTCATTTCCAGACAAATTTAAAGGAAACACTAAGGCTGCTTCAAAGATTATCTGATTCCTTTAAAATATA TGTCTATATACACAGACATGCTCTTTTTTTAAGTGCTTACATTTTAATAGAGATGAATCAGTTTTGGAATCTAAGCTGTTTGCCAAGCTG AAGCTACAGGTTGTGAAATAATTTTTAACTTTTGGAATCATACTGCCTACTGTTACTCTAAATAGAAATATAGGGTTTTTTTTAATGTGA ATTTTTGCCTATCTTTAAACATTTCAATGTCAGCCTTTGTTAACCTTAAATACACTGAATTGAATCTACAAAAGTGAACCATCTCAGACC TTTACTGATACTACAACTTTTGTTTTCTGATGGCCAAAATACCAAATGCCTGTTGTATTTATGGATTAAAAACTGCTTATAAAACCCTGT GTTACTACTCCTACTCTTGGAGATGATAATATTCTATGTGGTCAAATATTTGGACTCATTTAGGACTTAGATATTTCAGTGTACTTGATT TTTTAATTTAACTCTTTTTCACAGCCACGCTAAGGGTAAAAAGGAATAATTTCCTTCTGTCTTCCTTTTCAAGTATTTCTGGGTAAGGGA TTCAAAAAACTAAAACTGTTTTTGTTTGTAATATAAAATATGGAATTGATCTTTCCAGGGTCAGAGATGATTAATGTTTTTGCTATATAC TTTTATACATTATTTTCTTATCAAACTAGTTAACAAGTATTTTTATATGTTTGTAAGCAGATATGCTTTCATAGCATACCTTGTGTATAT GTAAAGATAAGTATTTAATTCTCACTGTTCACTTTTAACTGACAAAGAAAAACAAGTGGAAACTACAGAAACTGTGGTAGAACTTTTACT TGCTGGTCTGGTCTTGGTTGTACCCATCTTTGGCCAGTCACATAACTACTCAAGAAACCTTCCCAATAGAGTACAACAGGATGAGACTCT GAAATCACTTTCAGTATTCCCTGCTAGATATTGATTGTTATTTCAAGTATTAAGTGTAAGCTTTTAATGGATAATTAGTATAACTGTGGA TGGCATCTGATTTTGTTTTTAATTCTGTGGATTGTGTTTAAGCAATTCAATAGTATGTTCCTGATTTTGAGATGCTAAGTGGTATTGCAC AGTTGTCACTTTATCAAGTGTGTACAACAGTCCCATGAAGTTTATAGAGCATACCCTTGTATAGCTTCAGGTGCTAGAATTAAAATTGAT >In-frame_ENST00000527733_ENST00000537760_TCGA-EB-A82C-01A_USP47_chr11_11863771_+_RRAS2_chr11_14317401_length(amino acids)=181AA_start in transcript=211_stop in transcript=756 MVPGEENQLVPKESYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILR VKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKFQEQECPPSPEPTRKEKDKKGCHCVI -------------------------------------------------------------- >In-frame_ENST00000527733_ENST00000414023_TCGA-EB-A82C-01A_USP47_chr11_11863771_+_RRAS2_chr11_14317401_length(transcript)=2134nt_BP=250nt GAAGGCGGCTGTGGTAGCGGCGGCGGCGGCGGCGGAGCCCTGGGTCGGTGTCTGCGCGCTGGTGTCTGAGGCCCAGGCTGAGGCCTCCGC TATTGCTGGAGCGCAGGCGGCGGAGAGGATGACTGCCGCTGCCATTCTCTCTTGAGCTAGCGAGCCGCCGCCACCCTCCACCCTCCCCCG GCAGGGCGGAGAGGAGCGGCCGGAGTCAGCGATGGTGCCCGGCGAGGAGAACCAACTGGTCCCGAAAGAGGCAGTCCTATTTTGTAACGG ATTATGATCCAACCATTGAAGATTCTTACACAAAGCAGTGTGTGATAGATGACAGAGCAGCCCGGCTAGATATTTTGGATACAGCAGGAC AAGAAGAGTTTGGAGCCATGAGAGAACAGTATATGAGGACTGGCGAAGGCTTCCTGTTGGTCTTTTCAGTCACAGATAGAGGCAGTTTTG AAGAAATCTATAAGTTTCAAAGACAGATTCTCAGAGTAAAGGATCGTGATGAGTTCCCAATGATTTTAATTGGTAATAAAGCAGATCTGG ATCATCAAAGACAGGTAACACAGGAAGAAGGACAACAGTTAGCACGGCAGCTTAAGGTAACATACATGGAGGCATCAGCAAAGATTAGGA TGAATGTAGATCAAGCTTTCCATGAACTTGTCCGGGTTATCAGGAAATTTCAAGAGCAGGAATGTCCTCCTTCACCAGAACCAACACGGA AAGAAAAAGACAAGAAAGGCTGCCATTGTGTCATTTTCTAGAATCCCTTCAGTTTTAGCTACCAACGGCCAGGAAAAGCCCTCATCTTCT CTTTCTCTCCTCAGTTTACATCTTGTTGGTACCTTTCTAGCCTTAGACAAATGATCACCATGTTAGCCTTAGACGAAGAAGCTGGCTAGT CCTTTCTGTGAAGCTAATACAATGGTCATTTCCAGACAAATTTAAAGGAAACACTAAGGCTGCTTCAAAGATTATCTGATTCCTTTAAAA TATATGTCTATATACACAGACATGCTCTTTTTTTAAGTGCTTACATTTTAATAGAGATGAATCAGTTTTGGAATCTAAGCTGTTTGCCAA GCTGAAGCTACAGGTTGTGAAATAATTTTTAACTTTTGGAATCATACTGCCTACTGTTACTCTAAATAGAAATATAGGGTTTTTTTTAAT GTGAATTTTTGCCTATCTTTAAACATTTCAATGTCAGCCTTTGTTAACCTTAAATACACTGAATTGAATCTACAAAAGTGAACCATCTCA GACCTTTACTGATACTACAACTTTTGTTTTCTGATGGCCAAAATACCAAATGCCTGTTGTATTTATGGATTAAAAACTGCTTATAAAACC CTGTGTTACTACTCCTACTCTTGGAGATGATAATATTCTATGTGGTCAAATATTTGGACTCATTTAGGACTTAGATATTTCAGTGTACTT GATTTTTTAATTTAACTCTTTTTCACAGCCACGCTAAGGGTAAAAAGGAATAATTTCCTTCTGTCTTCCTTTTCAAGTATTTCTGGGTAA GGGATTCAAAAAACTAAAACTGTTTTTGTTTGTAATATAAAATATGGAATTGATCTTTCCAGGGTCAGAGATGATTAATGTTTTTGCTAT ATACTTTTATACATTATTTTCTTATCAAACTAGTTAACAAGTATTTTTATATGTTTGTAAGCAGATATGCTTTCATAGCATACCTTGTGT ATATGTAAAGATAAGTATTTAATTCTCACTGTTCACTTTTAACTGACAAAGAAAAACAAGTGGAAACTACAGAAACTGTGGTAGAACTTT TACTTGCTGGTCTGGTCTTGGTTGTACCCATCTTTGGCCAGTCACATAACTACTCAAGAAACCTTCCCAATAGAGTACAACAGGATGAGA CTCTGAAATCACTTTCAGTATTCCCTGCTAGATATTGATTGTTATTTCAAGTATTAAGTGTAAGCTTTTAATGGATAATTAGTATAACTG TGGATGGCATCTGATTTTGTTTTTAATTCTGTGGATTGTGTTTAAGCAATTCAATAGTATGTTCCTGATTTTGAGATGCTAAGTGGTATT >In-frame_ENST00000527733_ENST00000414023_TCGA-EB-A82C-01A_USP47_chr11_11863771_+_RRAS2_chr11_14317401_length(amino acids)=212AA_start in transcript=122_stop in transcript=760 MPLPFSLELASRRHPPPSPGRAERSGRSQRWCPARRTNWSRKRQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQY MRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELV -------------------------------------------------------------- >In-frame_ENST00000399455_ENST00000545643_TCGA-EB-A82C-01A_USP47_chr11_11863771_+_RRAS2_chr11_14317401_length(transcript)=2077nt_BP=159nt ATTGCTGGAGCGCAGGCGGCGGAGAGGATGACTGCCGCTGCCATTCTCTCTTGAGCTAGCGAGCCGCCGCCACCCTCCACCCTCCCCCGG CAGGGCGGAGAGGAGCGGCCGGAGTCAGCGATGGTGCCCGGCGAGGAGAACCAACTGGTCCCGAAAGAGGAAATTTCAAGAGCAGGAATG TCCTCCTTCACCAGAACCAACACGGAAAGAAAAAGACAAGAAAGGCTGCCATTGTGTCATTTTCTAGAATCCCTTCAGTTTTAGCTACCA ACGGCCAGGAAAAGCCCTCATCTTCTCTTTCTCTCCTCAGTTTACATCTTGTTGGTACCTTTCTAGCCTTAGACAAATGATCACCATGTT AGCCTTAGACGAAGAAGCTGGCTAGTCCTTTCTGTGAAGCTAATACAATGGTCATTTCCAGACAAATTTAAAGGAAACACTAAGGCTGCT TCAAAGATTATCTGATTCCTTTAAAATATATGTCTATATACACAGACATGCTCTTTTTTTAAGTGCTTACATTTTAATAGAGATGAATCA GTTTTGGAATCTAAGCTGTTTGCCAAGCTGAAGCTACAGGTTGTGAAATAATTTTTAACTTTTGGAATCATACTGCCTACTGTTACTCTA AATAGAAATATAGGGTTTTTTTTAATGTGAATTTTTGCCTATCTTTAAACATTTCAATGTCAGCCTTTGTTAACCTTAAATACACTGAAT TGAATCTACAAAAGTGAACCATCTCAGACCTTTACTGATACTACAACTTTTGTTTTCTGATGGCCAAAATACCAAATGCCTGTTGTATTT ATGGATTAAAAACTGCTTATAAAACCCTGTGTTACTACTCCTACTCTTGGAGATGATAATATTCTATGTGGTCAAATATTTGGACTCATT TAGGACTTAGATATTTCAGTGTACTTGATTTTTTAATTTAACTCTTTTTCACAGCCACGCTAAGGGTAAAAAGGAATAATTTCCTTCTGT CTTCCTTTTCAAGTATTTCTGGGTAAGGGATTCAAAAAACTAAAACTGTTTTTGTTTGTAATATAAAATATGGAATTGATCTTTCCAGGG TCAGAGATGATTAATGTTTTTGCTATATACTTTTATACATTATTTTCTTATCAAACTAGTTAACAAGTATTTTTATATGTTTGTAAGCAG ATATGCTTTCATAGCATACCTTGTGTATATGTAAAGATAAGTATTTAATTCTCACTGTTCACTTTTAACTGACAAAGAAAAACAAGTGGA AACTACAGAAACTGTGGTAGAACTTTTACTTGCTGGTCTGGTCTTGGTTGTACCCATCTTTGGCCAGTCACATAACTACTCAAGAAACCT TCCCAATAGAGTACAACAGGATGAGACTCTGAAATCACTTTCAGTATTCCCTGCTAGATATTGATTGTTATTTCAAGTATTAAGTGTAAG CTTTTAATGGATAATTAGTATAACTGTGGATGGCATCTGATTTTGTTTTTAATTCTGTGGATTGTGTTTAAGCAATTCAATAGTATGTTC CTGATTTTGAGATGCTAAGTGGTATTGCACAGTTGTCACTTTATCAAGTGTGTACAACAGTCCCATGAAGTTTATAGAGCATACCCTTGT ATAGCTTCAGGTGCTAGAATTAAAATTGATCTGTTATCGTAACACAGGAAGAAGGACAACAGTTAGCACGGCAGCTTAAGGTAACATACA TGGAGGCATCAGCAAAGATTAGGATGAATGTAGATCAAGCTTTCCATGAACTTGTCCGGGTTATCAGTTTTGAAGAAATCTATAAGTTTC AAAGACAGATTCTCAGAGTAAAGGATCGTGATGAGTTCCCAATGATTTTAATTGGTAATAAAGCAGATCTGGATCATCAAAGACAGTTTT GGATACAGCAGGACAAGAAGAGTTTGGAGCCATGAGAGAACAGTATATGAGGACTGGCGAAGGCTTCCTGTTGGTCTTTTCAGTCACAGA TAGAGGCAGTCCTATTTTGTAACGGATTATGATCCAACCATTGAAGATTCTTACACAAAGCAGTGTGTGATAGATGACAGAGCAGCCCGG >In-frame_ENST00000399455_ENST00000545643_TCGA-EB-A82C-01A_USP47_chr11_11863771_+_RRAS2_chr11_14317401_length(amino acids)=76AA_start in transcript=2042_stop in transcript=1812 -------------------------------------------------------------- >In-frame_ENST00000399455_ENST00000537760_TCGA-EB-A82C-01A_USP47_chr11_11863771_+_RRAS2_chr11_14317401_length(transcript)=2077nt_BP=159nt ATTGCTGGAGCGCAGGCGGCGGAGAGGATGACTGCCGCTGCCATTCTCTCTTGAGCTAGCGAGCCGCCGCCACCCTCCACCCTCCCCCGG CAGGGCGGAGAGGAGCGGCCGGAGTCAGCGATGGTGCCCGGCGAGGAGAACCAACTGGTCCCGAAAGAGTCCTATTTTGTAACGGATTAT GATCCAACCATTGAAGATTCTTACACAAAGCAGTGTGTGATAGATGACAGAGCAGCCCGGCTAGATATTTTGGATACAGCAGGACAAGAA GAGTTTGGAGCCATGAGAGAACAGTATATGAGGACTGGCGAAGGCTTCCTGTTGGTCTTTTCAGTCACAGATAGAGGCAGTTTTGAAGAA ATCTATAAGTTTCAAAGACAGATTCTCAGAGTAAAGGATCGTGATGAGTTCCCAATGATTTTAATTGGTAATAAAGCAGATCTGGATCAT CAAAGACAGGTAACACAGGAAGAAGGACAACAGTTAGCACGGCAGCTTAAGGTAACATACATGGAGGCATCAGCAAAGATTAGGATGAAT GTAGATCAAGCTTTCCATGAACTTGTCCGGGTTATCAGGAAATTTCAAGAGCAGGAATGTCCTCCTTCACCAGAACCAACACGGAAAGAA AAAGACAAGAAAGGCTGCCATTGTGTCATTTTCTAGAATCCCTTCAGTTTTAGCTACCAACGGCCAGGAAAAGCCCTCATCTTCTCTTTC TCTCCTCAGTTTACATCTTGTTGGTACCTTTCTAGCCTTAGACAAATGATCACCATGTTAGCCTTAGACGAAGAAGCTGGCTAGTCCTTT CTGTGAAGCTAATACAATGGTCATTTCCAGACAAATTTAAAGGAAACACTAAGGCTGCTTCAAAGATTATCTGATTCCTTTAAAATATAT GTCTATATACACAGACATGCTCTTTTTTTAAGTGCTTACATTTTAATAGAGATGAATCAGTTTTGGAATCTAAGCTGTTTGCCAAGCTGA AGCTACAGGTTGTGAAATAATTTTTAACTTTTGGAATCATACTGCCTACTGTTACTCTAAATAGAAATATAGGGTTTTTTTTAATGTGAA TTTTTGCCTATCTTTAAACATTTCAATGTCAGCCTTTGTTAACCTTAAATACACTGAATTGAATCTACAAAAGTGAACCATCTCAGACCT TTACTGATACTACAACTTTTGTTTTCTGATGGCCAAAATACCAAATGCCTGTTGTATTTATGGATTAAAAACTGCTTATAAAACCCTGTG TTACTACTCCTACTCTTGGAGATGATAATATTCTATGTGGTCAAATATTTGGACTCATTTAGGACTTAGATATTTCAGTGTACTTGATTT TTTAATTTAACTCTTTTTCACAGCCACGCTAAGGGTAAAAAGGAATAATTTCCTTCTGTCTTCCTTTTCAAGTATTTCTGGGTAAGGGAT TCAAAAAACTAAAACTGTTTTTGTTTGTAATATAAAATATGGAATTGATCTTTCCAGGGTCAGAGATGATTAATGTTTTTGCTATATACT TTTATACATTATTTTCTTATCAAACTAGTTAACAAGTATTTTTATATGTTTGTAAGCAGATATGCTTTCATAGCATACCTTGTGTATATG TAAAGATAAGTATTTAATTCTCACTGTTCACTTTTAACTGACAAAGAAAAACAAGTGGAAACTACAGAAACTGTGGTAGAACTTTTACTT GCTGGTCTGGTCTTGGTTGTACCCATCTTTGGCCAGTCACATAACTACTCAAGAAACCTTCCCAATAGAGTACAACAGGATGAGACTCTG AAATCACTTTCAGTATTCCCTGCTAGATATTGATTGTTATTTCAAGTATTAAGTGTAAGCTTTTAATGGATAATTAGTATAACTGTGGAT GGCATCTGATTTTGTTTTTAATTCTGTGGATTGTGTTTAAGCAATTCAATAGTATGTTCCTGATTTTGAGATGCTAAGTGGTATTGCACA GTTGTCACTTTATCAAGTGTGTACAACAGTCCCATGAAGTTTATAGAGCATACCCTTGTATAGCTTCAGGTGCTAGAATTAAAATTGATC >In-frame_ENST00000399455_ENST00000537760_TCGA-EB-A82C-01A_USP47_chr11_11863771_+_RRAS2_chr11_14317401_length(amino acids)=181AA_start in transcript=120_stop in transcript=665 MVPGEENQLVPKESYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILR VKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKFQEQECPPSPEPTRKEKDKKGCHCVI -------------------------------------------------------------- >In-frame_ENST00000399455_ENST00000414023_TCGA-EB-A82C-01A_USP47_chr11_11863771_+_RRAS2_chr11_14317401_length(transcript)=2043nt_BP=159nt ATTGCTGGAGCGCAGGCGGCGGAGAGGATGACTGCCGCTGCCATTCTCTCTTGAGCTAGCGAGCCGCCGCCACCCTCCACCCTCCCCCGG CAGGGCGGAGAGGAGCGGCCGGAGTCAGCGATGGTGCCCGGCGAGGAGAACCAACTGGTCCCGAAAGAGGCAGTCCTATTTTGTAACGGA TTATGATCCAACCATTGAAGATTCTTACACAAAGCAGTGTGTGATAGATGACAGAGCAGCCCGGCTAGATATTTTGGATACAGCAGGACA AGAAGAGTTTGGAGCCATGAGAGAACAGTATATGAGGACTGGCGAAGGCTTCCTGTTGGTCTTTTCAGTCACAGATAGAGGCAGTTTTGA AGAAATCTATAAGTTTCAAAGACAGATTCTCAGAGTAAAGGATCGTGATGAGTTCCCAATGATTTTAATTGGTAATAAAGCAGATCTGGA TCATCAAAGACAGGTAACACAGGAAGAAGGACAACAGTTAGCACGGCAGCTTAAGGTAACATACATGGAGGCATCAGCAAAGATTAGGAT GAATGTAGATCAAGCTTTCCATGAACTTGTCCGGGTTATCAGGAAATTTCAAGAGCAGGAATGTCCTCCTTCACCAGAACCAACACGGAA AGAAAAAGACAAGAAAGGCTGCCATTGTGTCATTTTCTAGAATCCCTTCAGTTTTAGCTACCAACGGCCAGGAAAAGCCCTCATCTTCTC TTTCTCTCCTCAGTTTACATCTTGTTGGTACCTTTCTAGCCTTAGACAAATGATCACCATGTTAGCCTTAGACGAAGAAGCTGGCTAGTC CTTTCTGTGAAGCTAATACAATGGTCATTTCCAGACAAATTTAAAGGAAACACTAAGGCTGCTTCAAAGATTATCTGATTCCTTTAAAAT ATATGTCTATATACACAGACATGCTCTTTTTTTAAGTGCTTACATTTTAATAGAGATGAATCAGTTTTGGAATCTAAGCTGTTTGCCAAG CTGAAGCTACAGGTTGTGAAATAATTTTTAACTTTTGGAATCATACTGCCTACTGTTACTCTAAATAGAAATATAGGGTTTTTTTTAATG TGAATTTTTGCCTATCTTTAAACATTTCAATGTCAGCCTTTGTTAACCTTAAATACACTGAATTGAATCTACAAAAGTGAACCATCTCAG ACCTTTACTGATACTACAACTTTTGTTTTCTGATGGCCAAAATACCAAATGCCTGTTGTATTTATGGATTAAAAACTGCTTATAAAACCC TGTGTTACTACTCCTACTCTTGGAGATGATAATATTCTATGTGGTCAAATATTTGGACTCATTTAGGACTTAGATATTTCAGTGTACTTG ATTTTTTAATTTAACTCTTTTTCACAGCCACGCTAAGGGTAAAAAGGAATAATTTCCTTCTGTCTTCCTTTTCAAGTATTTCTGGGTAAG GGATTCAAAAAACTAAAACTGTTTTTGTTTGTAATATAAAATATGGAATTGATCTTTCCAGGGTCAGAGATGATTAATGTTTTTGCTATA TACTTTTATACATTATTTTCTTATCAAACTAGTTAACAAGTATTTTTATATGTTTGTAAGCAGATATGCTTTCATAGCATACCTTGTGTA TATGTAAAGATAAGTATTTAATTCTCACTGTTCACTTTTAACTGACAAAGAAAAACAAGTGGAAACTACAGAAACTGTGGTAGAACTTTT ACTTGCTGGTCTGGTCTTGGTTGTACCCATCTTTGGCCAGTCACATAACTACTCAAGAAACCTTCCCAATAGAGTACAACAGGATGAGAC TCTGAAATCACTTTCAGTATTCCCTGCTAGATATTGATTGTTATTTCAAGTATTAAGTGTAAGCTTTTAATGGATAATTAGTATAACTGT GGATGGCATCTGATTTTGTTTTTAATTCTGTGGATTGTGTTTAAGCAATTCAATAGTATGTTCCTGATTTTGAGATGCTAAGTGGTATTG >In-frame_ENST00000399455_ENST00000414023_TCGA-EB-A82C-01A_USP47_chr11_11863771_+_RRAS2_chr11_14317401_length(amino acids)=212AA_start in transcript=31_stop in transcript=669 MPLPFSLELASRRHPPPSPGRAERSGRSQRWCPARRTNWSRKRQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQY MRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELV -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for USP47-RRAS2 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for USP47-RRAS2 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for USP47-RRAS2 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | RRAS2 | C0028326 | Noonan Syndrome | 3 | CLINGEN;GENOMICS_ENGLAND;ORPHANET |
Tgene | RRAS2 | C0019207 | Hepatoma, Morris | 1 | CTD_human |
Tgene | RRAS2 | C0019208 | Hepatoma, Novikoff | 1 | CTD_human |
Tgene | RRAS2 | C0023904 | Liver Neoplasms, Experimental | 1 | CTD_human |
Tgene | RRAS2 | C0086404 | Experimental Hepatoma | 1 | CTD_human |
Tgene | RRAS2 | C0349639 | Juvenile Myelomonocytic Leukemia | 1 | CTD_human |