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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:VPS18-NTRK3 (FusionGDB2 ID:97667) |
Fusion Gene Summary for VPS18-NTRK3 |
Fusion gene summary |
Fusion gene information | Fusion gene name: VPS18-NTRK3 | Fusion gene ID: 97667 | Hgene | Tgene | Gene symbol | VPS18 | NTRK3 | Gene ID | 57617 | 4916 |
Gene name | VPS18 core subunit of CORVET and HOPS complexes | neurotrophic receptor tyrosine kinase 3 | |
Synonyms | PEP3 | GP145-TrkC|TRKC|gp145(trkC) | |
Cytomap | 15q15.1 | 15q25.3 | |
Type of gene | protein-coding | protein-coding | |
Description | vacuolar protein sorting-associated protein 18 homologVPS18, CORVET/HOPS core subunithVPS18vacuolar protein sorting 18 homologvacuolar protein sorting protein 18 | NT-3 growth factor receptorETS related protein-neurotrophic receptor tyrosine kinase fusion proteinETV6-NTRK3 fusionneurotrophic tyrosine kinase, receptor, type 3tyrosine kinase receptor C | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | Q16288 | |
Ensembl transtripts involved in fusion gene | ENST00000220509, ENST00000558474, | ENST00000394480, ENST00000557856, ENST00000357724, ENST00000355254, ENST00000360948, ENST00000542733, ENST00000558676, ENST00000317501, ENST00000558306, ENST00000540489, | |
Fusion gene scores | * DoF score | 3 X 3 X 3=27 | 15 X 19 X 11=3135 |
# samples | 3 | 15 | |
** MAII score | log2(3/27*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(15/3135*10)=-4.38543103719352 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: VPS18 [Title/Abstract] AND NTRK3 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | VPS18(41193212)-NTRK3(88423659), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | VPS18 | GO:0007032 | endosome organization | 18799622 |
Hgene | VPS18 | GO:0007040 | lysosome organization | 18799622 |
Hgene | VPS18 | GO:2000300 | regulation of synaptic vesicle exocytosis | 17027648 |
Tgene | NTRK3 | GO:0000187 | activation of MAPK activity | 23027130 |
Tgene | NTRK3 | GO:0001933 | negative regulation of protein phosphorylation | 23027130 |
Tgene | NTRK3 | GO:0007169 | transmembrane receptor protein tyrosine kinase signaling pathway | 23027130 |
Tgene | NTRK3 | GO:0008284 | positive regulation of cell proliferation | 23027130 |
Tgene | NTRK3 | GO:0010628 | positive regulation of gene expression | 23027130 |
Tgene | NTRK3 | GO:0030335 | positive regulation of cell migration | 23027130 |
Tgene | NTRK3 | GO:0032148 | activation of protein kinase B activity | 23027130 |
Tgene | NTRK3 | GO:0033138 | positive regulation of peptidyl-serine phosphorylation | 23027130 |
Tgene | NTRK3 | GO:0050927 | positive regulation of positive chemotaxis | 23027130 |
Tgene | NTRK3 | GO:0090630 | activation of GTPase activity | 23027130 |
Tgene | NTRK3 | GO:2000251 | positive regulation of actin cytoskeleton reorganization | 23027130 |
Fusion gene breakpoints across VPS18 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across NTRK3 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | COAD | TCGA-A6-2674-01A | VPS18 | chr15 | 41193212 | + | NTRK3 | chr15 | 88423659 | - |
ChimerDB4 | COAD | TCGA-A6-2674-01A | VPS18 | chr15 | 41193212 | - | NTRK3 | chr15 | 88423659 | - |
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Fusion Gene ORF analysis for VPS18-NTRK3 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000220509 | ENST00000394480 | VPS18 | chr15 | 41193212 | + | NTRK3 | chr15 | 88423659 | - |
In-frame | ENST00000220509 | ENST00000557856 | VPS18 | chr15 | 41193212 | + | NTRK3 | chr15 | 88423659 | - |
In-frame | ENST00000220509 | ENST00000357724 | VPS18 | chr15 | 41193212 | + | NTRK3 | chr15 | 88423659 | - |
In-frame | ENST00000220509 | ENST00000355254 | VPS18 | chr15 | 41193212 | + | NTRK3 | chr15 | 88423659 | - |
In-frame | ENST00000220509 | ENST00000360948 | VPS18 | chr15 | 41193212 | + | NTRK3 | chr15 | 88423659 | - |
5CDS-intron | ENST00000220509 | ENST00000542733 | VPS18 | chr15 | 41193212 | + | NTRK3 | chr15 | 88423659 | - |
5CDS-intron | ENST00000220509 | ENST00000558676 | VPS18 | chr15 | 41193212 | + | NTRK3 | chr15 | 88423659 | - |
5CDS-intron | ENST00000220509 | ENST00000317501 | VPS18 | chr15 | 41193212 | + | NTRK3 | chr15 | 88423659 | - |
5CDS-intron | ENST00000220509 | ENST00000558306 | VPS18 | chr15 | 41193212 | + | NTRK3 | chr15 | 88423659 | - |
5CDS-intron | ENST00000220509 | ENST00000540489 | VPS18 | chr15 | 41193212 | + | NTRK3 | chr15 | 88423659 | - |
intron-3CDS | ENST00000558474 | ENST00000394480 | VPS18 | chr15 | 41193212 | + | NTRK3 | chr15 | 88423659 | - |
intron-3CDS | ENST00000558474 | ENST00000557856 | VPS18 | chr15 | 41193212 | + | NTRK3 | chr15 | 88423659 | - |
intron-3CDS | ENST00000558474 | ENST00000357724 | VPS18 | chr15 | 41193212 | + | NTRK3 | chr15 | 88423659 | - |
intron-3CDS | ENST00000558474 | ENST00000355254 | VPS18 | chr15 | 41193212 | + | NTRK3 | chr15 | 88423659 | - |
intron-3CDS | ENST00000558474 | ENST00000360948 | VPS18 | chr15 | 41193212 | + | NTRK3 | chr15 | 88423659 | - |
intron-intron | ENST00000558474 | ENST00000542733 | VPS18 | chr15 | 41193212 | + | NTRK3 | chr15 | 88423659 | - |
intron-intron | ENST00000558474 | ENST00000558676 | VPS18 | chr15 | 41193212 | + | NTRK3 | chr15 | 88423659 | - |
intron-intron | ENST00000558474 | ENST00000317501 | VPS18 | chr15 | 41193212 | + | NTRK3 | chr15 | 88423659 | - |
intron-intron | ENST00000558474 | ENST00000558306 | VPS18 | chr15 | 41193212 | + | NTRK3 | chr15 | 88423659 | - |
intron-intron | ENST00000558474 | ENST00000540489 | VPS18 | chr15 | 41193212 | + | NTRK3 | chr15 | 88423659 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000220509 | VPS18 | chr15 | 41193212 | + | ENST00000394480 | NTRK3 | chr15 | 88423659 | - | 4816 | 2535 | 339 | 2879 | 846 |
ENST00000220509 | VPS18 | chr15 | 41193212 | + | ENST00000557856 | NTRK3 | chr15 | 88423659 | - | 3024 | 2535 | 339 | 2879 | 846 |
ENST00000220509 | VPS18 | chr15 | 41193212 | + | ENST00000357724 | NTRK3 | chr15 | 88423659 | - | 3024 | 2535 | 339 | 2879 | 846 |
ENST00000220509 | VPS18 | chr15 | 41193212 | + | ENST00000355254 | NTRK3 | chr15 | 88423659 | - | 3024 | 2535 | 339 | 2879 | 846 |
ENST00000220509 | VPS18 | chr15 | 41193212 | + | ENST00000360948 | NTRK3 | chr15 | 88423659 | - | 3024 | 2535 | 339 | 2879 | 846 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000220509 | ENST00000394480 | VPS18 | chr15 | 41193212 | + | NTRK3 | chr15 | 88423659 | - | 0.003021396 | 0.99697864 |
ENST00000220509 | ENST00000557856 | VPS18 | chr15 | 41193212 | + | NTRK3 | chr15 | 88423659 | - | 0.00598333 | 0.99401665 |
ENST00000220509 | ENST00000357724 | VPS18 | chr15 | 41193212 | + | NTRK3 | chr15 | 88423659 | - | 0.00598333 | 0.99401665 |
ENST00000220509 | ENST00000355254 | VPS18 | chr15 | 41193212 | + | NTRK3 | chr15 | 88423659 | - | 0.00598333 | 0.99401665 |
ENST00000220509 | ENST00000360948 | VPS18 | chr15 | 41193212 | + | NTRK3 | chr15 | 88423659 | - | 0.00598333 | 0.99401665 |
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Fusion Genomic Features for VPS18-NTRK3 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for VPS18-NTRK3 |
Go to FGviewer for the breakpoints of chr15:41193212-chr15:88423659 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | NTRK3 |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Receptor tyrosine kinase involved in nervous system and probably heart development. Upon binding of its ligand NTF3/neurotrophin-3, NTRK3 autophosphorylates and activates different signaling pathways, including the phosphatidylinositol 3-kinase/AKT and the MAPK pathways, that control cell survival and differentiation. {ECO:0000269|PubMed:25196463}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | VPS18 | chr15:41193212 | chr15:88423659 | ENST00000220509 | + | 4 | 5 | 454_481 | 732.0 | 974.0 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000317501 | 0 | 15 | 160_209 | 0 | 613.0 | Domain | Note=LRRCT | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000317501 | 0 | 15 | 210_300 | 0 | 613.0 | Domain | Note=Ig-like C2-type 1 | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000317501 | 0 | 15 | 309_382 | 0 | 613.0 | Domain | Note=Ig-like C2-type 2 | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000317501 | 0 | 15 | 538_839 | 0 | 613.0 | Domain | Protein kinase | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000540489 | 0 | 14 | 160_209 | 0 | 613.0 | Domain | Note=LRRCT | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000540489 | 0 | 14 | 210_300 | 0 | 613.0 | Domain | Note=Ig-like C2-type 1 | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000540489 | 0 | 14 | 309_382 | 0 | 613.0 | Domain | Note=Ig-like C2-type 2 | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000540489 | 0 | 14 | 538_839 | 0 | 613.0 | Domain | Protein kinase | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000317501 | 0 | 15 | 544_552 | 0 | 613.0 | Nucleotide binding | ATP | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000540489 | 0 | 14 | 544_552 | 0 | 613.0 | Nucleotide binding | ATP | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000317501 | 0 | 15 | 104_125 | 0 | 613.0 | Repeat | Note=LRR 1 | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000317501 | 0 | 15 | 128_149 | 0 | 613.0 | Repeat | Note=LRR 2 | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000540489 | 0 | 14 | 104_125 | 0 | 613.0 | Repeat | Note=LRR 1 | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000540489 | 0 | 14 | 128_149 | 0 | 613.0 | Repeat | Note=LRR 2 | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000317501 | 0 | 15 | 32_429 | 0 | 613.0 | Topological domain | Extracellular | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000317501 | 0 | 15 | 454_839 | 0 | 613.0 | Topological domain | Cytoplasmic | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000540489 | 0 | 14 | 32_429 | 0 | 613.0 | Topological domain | Extracellular | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000540489 | 0 | 14 | 454_839 | 0 | 613.0 | Topological domain | Cytoplasmic | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000317501 | 0 | 15 | 430_453 | 0 | 613.0 | Transmembrane | Helical | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000540489 | 0 | 14 | 430_453 | 0 | 613.0 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | VPS18 | chr15:41193212 | chr15:88423659 | ENST00000220509 | + | 4 | 5 | 802_848 | 732.0 | 974.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | VPS18 | chr15:41193212 | chr15:88423659 | ENST00000220509 | + | 4 | 5 | 618_772 | 732.0 | 974.0 | Repeat | Note=CHCR |
Hgene | VPS18 | chr15:41193212 | chr15:88423659 | ENST00000220509 | + | 4 | 5 | 853_947 | 732.0 | 974.0 | Zinc finger | Note=RING-type |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000355254 | 15 | 18 | 160_209 | 711.0 | 826.0 | Domain | Note=LRRCT | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000355254 | 15 | 18 | 210_300 | 711.0 | 826.0 | Domain | Note=Ig-like C2-type 1 | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000355254 | 15 | 18 | 309_382 | 711.0 | 826.0 | Domain | Note=Ig-like C2-type 2 | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000355254 | 15 | 18 | 538_839 | 711.0 | 826.0 | Domain | Protein kinase | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000360948 | 16 | 19 | 160_209 | 725.0 | 840.0 | Domain | Note=LRRCT | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000360948 | 16 | 19 | 210_300 | 725.0 | 840.0 | Domain | Note=Ig-like C2-type 1 | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000360948 | 16 | 19 | 309_382 | 725.0 | 840.0 | Domain | Note=Ig-like C2-type 2 | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000360948 | 16 | 19 | 538_839 | 725.0 | 840.0 | Domain | Protein kinase | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000394480 | 16 | 19 | 160_209 | 711.0 | 826.0 | Domain | Note=LRRCT | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000394480 | 16 | 19 | 210_300 | 711.0 | 826.0 | Domain | Note=Ig-like C2-type 1 | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000394480 | 16 | 19 | 309_382 | 711.0 | 826.0 | Domain | Note=Ig-like C2-type 2 | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000394480 | 16 | 19 | 538_839 | 711.0 | 826.0 | Domain | Protein kinase | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000355254 | 15 | 18 | 544_552 | 711.0 | 826.0 | Nucleotide binding | ATP | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000360948 | 16 | 19 | 544_552 | 725.0 | 840.0 | Nucleotide binding | ATP | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000394480 | 16 | 19 | 544_552 | 711.0 | 826.0 | Nucleotide binding | ATP | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000355254 | 15 | 18 | 104_125 | 711.0 | 826.0 | Repeat | Note=LRR 1 | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000355254 | 15 | 18 | 128_149 | 711.0 | 826.0 | Repeat | Note=LRR 2 | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000360948 | 16 | 19 | 104_125 | 725.0 | 840.0 | Repeat | Note=LRR 1 | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000360948 | 16 | 19 | 128_149 | 725.0 | 840.0 | Repeat | Note=LRR 2 | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000394480 | 16 | 19 | 104_125 | 711.0 | 826.0 | Repeat | Note=LRR 1 | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000394480 | 16 | 19 | 128_149 | 711.0 | 826.0 | Repeat | Note=LRR 2 | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000355254 | 15 | 18 | 32_429 | 711.0 | 826.0 | Topological domain | Extracellular | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000355254 | 15 | 18 | 454_839 | 711.0 | 826.0 | Topological domain | Cytoplasmic | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000360948 | 16 | 19 | 32_429 | 725.0 | 840.0 | Topological domain | Extracellular | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000360948 | 16 | 19 | 454_839 | 725.0 | 840.0 | Topological domain | Cytoplasmic | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000394480 | 16 | 19 | 32_429 | 711.0 | 826.0 | Topological domain | Extracellular | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000394480 | 16 | 19 | 454_839 | 711.0 | 826.0 | Topological domain | Cytoplasmic | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000355254 | 15 | 18 | 430_453 | 711.0 | 826.0 | Transmembrane | Helical | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000360948 | 16 | 19 | 430_453 | 725.0 | 840.0 | Transmembrane | Helical | |
Tgene | NTRK3 | chr15:41193212 | chr15:88423659 | ENST00000394480 | 16 | 19 | 430_453 | 711.0 | 826.0 | Transmembrane | Helical |
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Fusion Gene Sequence for VPS18-NTRK3 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000220509_ENST00000394480_TCGA-A6-2674-01A_VPS18_chr15_41193212_+_NTRK3_chr15_88423659_length(transcript)=4816nt_BP=2535nt GCCCGCGTCACGGGGGCGGGAGTCAGCTGAGCTGCCGGGGCGAGGTTGGGATCACCTGGCACCGGCTGAAGGGAGCCTGTGATTTTTTTG TAGCGGGGGCGGGGAGTAAGGTGCAAGACTGCGCCAGATTCAAGGACGAGGGCTGCCCGATTATCTCGCTGCATAAGGCAAGAGCAAGAG GATCCTCAGGATTTTAAAGAGGAGGCGACGGCTGCAGGTTCCCAGGATCTGTCAGAGGCTGGGGAGTTACAGCTTCCATTCTGGGGCGAC GGGGACCCCGGGGGGGTAGCCCTTTTGTAATCCCCAGGCCCCGGACAAAGAGCCCAGAGGCCGGGCACCATGGCGTCCATCCTGGATGAG TACGAGAACTCGCTGTCCCGCTCGGCCGTCTTGCAGCCCGGCTGCCCTAGCGTGGGCATCCCCCACTCGGGGTATGTGAATGCCCAGCTG GAGAAGGAAGTGCCCATCTTCACAAAGCAGCGCATTGACTTCACCCCTTCCGAGCGCATTACCAGTCTTGTCGTCTCCAGCAATCAGCTG TGCATGAGCCTGGGCAAGGATACACTGCTCCGCATTGACTTGGGCAAGGCAAATGAGCCCAACCACGTGGAGCTGGGACGTAAGGATGAC GCAAAAGTTCACAAGATGTTCCTTGACCATACTGGCTCTCACCTGCTGATTGCCCTGAGCAGCACGGAGGTCCTCTACGTGAACCGAAAT GGACAGAAGGTACGGCCACTAGCACGCTGGAAGGGGCAGCTGGTGGAGAGTGTGGGTTGGAACAAGGCACTGGGCACGGAGAGCAGCACA GGCCCCATCCTGGTCGGGACTGCCCAAGGCCACATCTTTGAAGCAGAGCTCTCAGCCAGCGAAGGTGGGCTTTTCGGCCCTGCTCCGGAT CTCTACTTCCGCCCATTGTACGTGCTAAATGAAGAAGGGGGTCCAGCACCTGTGTGCTCCCTTGAGGCCGAGCGGGGCCCTGATGGGCGT AGCTTTGTTATTGCCACCACTCGGCAGCGCCTCTTCCAGTTCATAGGCCGAGCAGCAGAGGGGGCTGAGGCCCAGGGTTTCTCAGGGCTC TTTGCAGCTTACACGGACCACCCACCCCCATTCCGTGAGTTTCCCAGCAACCTGGGCTACAGTGAGTTGGCCTTCTACACCCCCAAGCTG CGCTCCGCACCCCGGGCCTTCGCCTGGATGATGGGGGATGGTGTGTTGTATGGGGCATTGGACTGTGGGCGCCCTGACTCTCTGCTGAGC GAGGAGCGAGTCTGGGAGTACCCAGAGGGGGTAGGGCCTGGGGCCAGCCCACCCCTAGCCATCGTCTTGACCCAGTTCCACTTCCTGCTG CTACTGGCAGACCGGGTGGAGGCAGTGTGCACACTGACCGGGCAGGTGGTGCTGCGGGATCACTTCCTGGAGAAATTTGGGCCGCTGAAG CACATGGTGAAGGACTCCTCCACAGGCCAGCTGTGGGCCTACACTGAGCGGGCTGTCTTCCGCTACCACGTGCAACGGGAGGCCCGAGAT GTCTGGCGCACCTATCTGGACATGAACCGCTTCGATCTGGCCAAAGAGTATTGTCGAGAGCGGCCCGACTGCCTGGACACGGTCCTGGCC CGGGAGGCCGATTTCTGCTTTCGCCAGCGTCGCTACCTGGAGAGCGCACGCTGCTATGCCCTGACCCAGAGCTACTTTGAGGAGATTGCC CTCAAGTTCCTGGAGGCCCGACAGGAGGAGGCTCTGGCTGAGTTCCTGCAGCGAAAACTGGCCAGTTTGAAGCCAGCCGAACGTACCCAG GCCACACTGCTGACCACCTGGCTGACAGAGCTCTACCTGAGCCGGCTTGGGGCTCTGCAGGGCGACCCAGAGGCCCTGACTCTCTACCGA GAAACCAAGGAATGCTTTCGAACCTTCCTCAGCAGCCCCCGCCACAAAGAGTGGCTCTTTGCCAGCCGGGCCTCTATCCATGAGCTGCTC GCCAGTCATGGGGACACAGAACACATGGTGTACTTTGCAGTGATCATGCAGGACTATGAGCGGGTGGTGGCTTACCACTGTCAGCACGAG GCCTACGAGGAGGCCCTGGCCGTGCTCGCCCGCCACCGTGACCCCCAGCTCTTCTACAAGTTCTCACCCATCCTCATCCGTCACATCCCC CGCCAGCTTGTAGATGCCTGGATTGAGATGGGCAGCCGGCTGGATGCTCGTCAGCTCATTCCTGCCCTGGTGAACTACAGCCAGGGTGGT GAGGTCCAGCAGGTGAGCCAGGCCATCCGCTACATGGAGTTCTGCGTGAACGTGCTGGGGGAGACTGAGCAGGCCATCCACAACTACCTG CTGTCACTGTATGCCCGTGGCCGGCCGGACTCACTACTGGCCTATCTGGAGCAGGCTGGGGCCAGCCCCCACCGGGTGCATTACGACCTC AAGTATGCGCTGCGGCTCTGCGCCGAGCATGGCCACCACCGCGCTTGTGTCCATGTCTACAAGGTCCTAGAGCTGTATGAGGAGGCCGTG GACCTGGCCCTGCAGGTGGGAGGACACACCATGCTCCCCATTCGCTGGATGCCTCCTGAAAGCATCATGTACCGGAAGTTCACTACAGAG AGTGATGTATGGAGCTTCGGGGTGATCCTCTGGGAGATCTTCACCTATGGAAAGCAGCCATGGTTCCAACTCTCAAACACGGAGGTCATT GAGTGCATTACCCAAGGTCGTGTTTTGGAGCGGCCCCGAGTCTGCCCCAAAGAGGTGTACGATGTCATGCTGGGGTGCTGGCAGAGGGAA CCACAGCAGCGGTTGAACATCAAGGAGATCTACAAAATCCTCCATGCTTTGGGGAAGGCCACCCCAATCTACCTGGACATTCTTGGCTAG TGGTGGCTGGTGGTCATGAATTCATACTCTGTTGCCTCCTCTCTCCCTGCCTCACATCTCCCTTCCACCTCACAACTCCTTCCATCCTTG ACTGAAGCGAACATCTTCATATAAACTCAAGTGCCTGCTACACATACAACACTGAAAAAAGGAAAAAAAAAGAAAGAAAAAAAAACCCTG TAAGGCAGTTTGGCAAATATATATATATATATATATATTTATATATCTAACTATCTATCAATCTATATCTACAGAGAGTTACCTTCTCTA GTACACAGAGAAGCTGCTGATACAGAAAACCACAAGACTTTAACAACTCAGAAACTCTAAAATATTAATAATACAAAGGAAAATTCCCTT TGACTTAAGCTGTGGCCCATGCTTCTAATGCTACGGCTCTTTGGAGCAGAAGACCTGGACCATGCAGAGAGACAATCTTTGGGATGAGAG CTCTGGGACGGGAGGAGTTAAGGTGGTGCTCAGTCGCTGCTGTGTGTGTCTGTTACCCCGGAAGCTCACCACAGGCACATGTGGGGACTG CATGGCTGTGCTCAGCAAAGAAATGATGCCTGAGCAGGGTCCTTGCCTCCACTTCTTCCCCATTTCCTCCACTTCAGGACAATGTTCTAA TTTGTCCATTCTAAAAAGTGTAATCTTGATGCTTTTGGGAATCAATGATGGCACCTACGGGTAAACACAGAACAGACAACCCCACAACAC AAAACCATGACAAGAGCTGACAGCATCCATCCTGGGTGTAAGCTTCTTGCTGGAGTTGCAAAGGATGTGTCTTTCTATTCTCAGAACTTA AAGAACTGGACTTTCTGGAGTAAAAGAACCACAGAAGAAAAAATAGCTGAAACCTGAACCCTGCCAAGACACTGCCACCTGTCTTTTCCA TCATTGCAAAGATTCCTTGGCCTCACCTCCCACTTTCAGGCCCCTGGGAAGCTTAGGGGGTTAGGAAACAGGTCCCCATGTTATCTTTGA ATGTAGACACAGCACGCTTTAGGGTTGCAATAGCAAGAGACTTGGTTGCTTGTAGGTCATTATAACGAATGCCCCCTGGTCCTCTCAGTT TCTCATCCTGCTTCCCTAGATCCTAGACCCCACTTCCTGGGTCTCTACTGAGTCCCAGGTAAACCCCACTGCCAAGGAAGGGAGCCAGGT CTAGTGAGAGGCTGCAGCAGTGAGTGTTTCAGGAAAGCAAGCAGTGGAGTGGGTGAGAGCCAGCAGGGGAGAATCTACTTGGCACCTGTG CCAGGCCCCTTGGCATTCTCCTCACGTTTCCAGCCCCTGGGAGGATTGATGCATCTGCCTTTGAGCTGTTGTGAAAACGCAGGGGCTGAG AAATCACTTTTGTGGGCTGGGGTAGGGGGAAGGGCTGAGGCTTCTCTGGGAGATGTCCAATGAGCGGCCAGTGCTGCAGGCTTGGAATCT TAATGAGGCCTGAGCCCTGACCGGAGAGAGGGAAGGAAACATCTGTGCTGGGGCCTGCTCCCTCTGCCCCAGCACTGGGGAATCACTGCC TTCCTGGCTGCTGCCACATACCACAGTGGGGCCGACCTCTGGGCCTCCCTGTCACATGAAACATGGAAGCCAACAGCCTGGCCCCACAGA TCTCCTCTGCTGGAGAGGAGAGGATGTGTTCCTCCCAGGCCACGGGGCCCCTCTGCCTTGCCCCAAGCACAGAGCTACCTAAGGGACTGA CCTTTGCCACACTGGAGCTCACCTCCCGGGGGCCTCTGGCCTACCCTTTTCCCTGCCAGCTGAAGAGACTGCCGGCAGCCTGGACGTCCT GGTTAGCTGAAGGCAGCTGAAATGTGGGCCTCCCTATGTGGGGTTTAGTACTGAATTATGTGTTTGTGGTTTTGCTTCTTTTTGTAGACC >In-frame_ENST00000220509_ENST00000394480_TCGA-A6-2674-01A_VPS18_chr15_41193212_+_NTRK3_chr15_88423659_length(amino acids)=846AA_start in transcript=339_stop in transcript=2879 MASILDEYENSLSRSAVLQPGCPSVGIPHSGYVNAQLEKEVPIFTKQRIDFTPSERITSLVVSSNQLCMSLGKDTLLRIDLGKANEPNHV ELGRKDDAKVHKMFLDHTGSHLLIALSSTEVLYVNRNGQKVRPLARWKGQLVESVGWNKALGTESSTGPILVGTAQGHIFEAELSASEGG LFGPAPDLYFRPLYVLNEEGGPAPVCSLEAERGPDGRSFVIATTRQRLFQFIGRAAEGAEAQGFSGLFAAYTDHPPPFREFPSNLGYSEL AFYTPKLRSAPRAFAWMMGDGVLYGALDCGRPDSLLSEERVWEYPEGVGPGASPPLAIVLTQFHFLLLLADRVEAVCTLTGQVVLRDHFL EKFGPLKHMVKDSSTGQLWAYTERAVFRYHVQREARDVWRTYLDMNRFDLAKEYCRERPDCLDTVLAREADFCFRQRRYLESARCYALTQ SYFEEIALKFLEARQEEALAEFLQRKLASLKPAERTQATLLTTWLTELYLSRLGALQGDPEALTLYRETKECFRTFLSSPRHKEWLFASR ASIHELLASHGDTEHMVYFAVIMQDYERVVAYHCQHEAYEEALAVLARHRDPQLFYKFSPILIRHIPRQLVDAWIEMGSRLDARQLIPAL VNYSQGGEVQQVSQAIRYMEFCVNVLGETEQAIHNYLLSLYARGRPDSLLAYLEQAGASPHRVHYDLKYALRLCAEHGHHRACVHVYKVL ELYEEAVDLALQVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVIECITQGRVLERPRVCPKEVYDVM -------------------------------------------------------------- >In-frame_ENST00000220509_ENST00000557856_TCGA-A6-2674-01A_VPS18_chr15_41193212_+_NTRK3_chr15_88423659_length(transcript)=3024nt_BP=2535nt GCCCGCGTCACGGGGGCGGGAGTCAGCTGAGCTGCCGGGGCGAGGTTGGGATCACCTGGCACCGGCTGAAGGGAGCCTGTGATTTTTTTG TAGCGGGGGCGGGGAGTAAGGTGCAAGACTGCGCCAGATTCAAGGACGAGGGCTGCCCGATTATCTCGCTGCATAAGGCAAGAGCAAGAG GATCCTCAGGATTTTAAAGAGGAGGCGACGGCTGCAGGTTCCCAGGATCTGTCAGAGGCTGGGGAGTTACAGCTTCCATTCTGGGGCGAC GGGGACCCCGGGGGGGTAGCCCTTTTGTAATCCCCAGGCCCCGGACAAAGAGCCCAGAGGCCGGGCACCATGGCGTCCATCCTGGATGAG TACGAGAACTCGCTGTCCCGCTCGGCCGTCTTGCAGCCCGGCTGCCCTAGCGTGGGCATCCCCCACTCGGGGTATGTGAATGCCCAGCTG GAGAAGGAAGTGCCCATCTTCACAAAGCAGCGCATTGACTTCACCCCTTCCGAGCGCATTACCAGTCTTGTCGTCTCCAGCAATCAGCTG TGCATGAGCCTGGGCAAGGATACACTGCTCCGCATTGACTTGGGCAAGGCAAATGAGCCCAACCACGTGGAGCTGGGACGTAAGGATGAC GCAAAAGTTCACAAGATGTTCCTTGACCATACTGGCTCTCACCTGCTGATTGCCCTGAGCAGCACGGAGGTCCTCTACGTGAACCGAAAT GGACAGAAGGTACGGCCACTAGCACGCTGGAAGGGGCAGCTGGTGGAGAGTGTGGGTTGGAACAAGGCACTGGGCACGGAGAGCAGCACA GGCCCCATCCTGGTCGGGACTGCCCAAGGCCACATCTTTGAAGCAGAGCTCTCAGCCAGCGAAGGTGGGCTTTTCGGCCCTGCTCCGGAT CTCTACTTCCGCCCATTGTACGTGCTAAATGAAGAAGGGGGTCCAGCACCTGTGTGCTCCCTTGAGGCCGAGCGGGGCCCTGATGGGCGT AGCTTTGTTATTGCCACCACTCGGCAGCGCCTCTTCCAGTTCATAGGCCGAGCAGCAGAGGGGGCTGAGGCCCAGGGTTTCTCAGGGCTC TTTGCAGCTTACACGGACCACCCACCCCCATTCCGTGAGTTTCCCAGCAACCTGGGCTACAGTGAGTTGGCCTTCTACACCCCCAAGCTG CGCTCCGCACCCCGGGCCTTCGCCTGGATGATGGGGGATGGTGTGTTGTATGGGGCATTGGACTGTGGGCGCCCTGACTCTCTGCTGAGC GAGGAGCGAGTCTGGGAGTACCCAGAGGGGGTAGGGCCTGGGGCCAGCCCACCCCTAGCCATCGTCTTGACCCAGTTCCACTTCCTGCTG CTACTGGCAGACCGGGTGGAGGCAGTGTGCACACTGACCGGGCAGGTGGTGCTGCGGGATCACTTCCTGGAGAAATTTGGGCCGCTGAAG CACATGGTGAAGGACTCCTCCACAGGCCAGCTGTGGGCCTACACTGAGCGGGCTGTCTTCCGCTACCACGTGCAACGGGAGGCCCGAGAT GTCTGGCGCACCTATCTGGACATGAACCGCTTCGATCTGGCCAAAGAGTATTGTCGAGAGCGGCCCGACTGCCTGGACACGGTCCTGGCC CGGGAGGCCGATTTCTGCTTTCGCCAGCGTCGCTACCTGGAGAGCGCACGCTGCTATGCCCTGACCCAGAGCTACTTTGAGGAGATTGCC CTCAAGTTCCTGGAGGCCCGACAGGAGGAGGCTCTGGCTGAGTTCCTGCAGCGAAAACTGGCCAGTTTGAAGCCAGCCGAACGTACCCAG GCCACACTGCTGACCACCTGGCTGACAGAGCTCTACCTGAGCCGGCTTGGGGCTCTGCAGGGCGACCCAGAGGCCCTGACTCTCTACCGA GAAACCAAGGAATGCTTTCGAACCTTCCTCAGCAGCCCCCGCCACAAAGAGTGGCTCTTTGCCAGCCGGGCCTCTATCCATGAGCTGCTC GCCAGTCATGGGGACACAGAACACATGGTGTACTTTGCAGTGATCATGCAGGACTATGAGCGGGTGGTGGCTTACCACTGTCAGCACGAG GCCTACGAGGAGGCCCTGGCCGTGCTCGCCCGCCACCGTGACCCCCAGCTCTTCTACAAGTTCTCACCCATCCTCATCCGTCACATCCCC CGCCAGCTTGTAGATGCCTGGATTGAGATGGGCAGCCGGCTGGATGCTCGTCAGCTCATTCCTGCCCTGGTGAACTACAGCCAGGGTGGT GAGGTCCAGCAGGTGAGCCAGGCCATCCGCTACATGGAGTTCTGCGTGAACGTGCTGGGGGAGACTGAGCAGGCCATCCACAACTACCTG CTGTCACTGTATGCCCGTGGCCGGCCGGACTCACTACTGGCCTATCTGGAGCAGGCTGGGGCCAGCCCCCACCGGGTGCATTACGACCTC AAGTATGCGCTGCGGCTCTGCGCCGAGCATGGCCACCACCGCGCTTGTGTCCATGTCTACAAGGTCCTAGAGCTGTATGAGGAGGCCGTG GACCTGGCCCTGCAGGTGGGAGGACACACCATGCTCCCCATTCGCTGGATGCCTCCTGAAAGCATCATGTACCGGAAGTTCACTACAGAG AGTGATGTATGGAGCTTCGGGGTGATCCTCTGGGAGATCTTCACCTATGGAAAGCAGCCATGGTTCCAACTCTCAAACACGGAGGTCATT GAGTGCATTACCCAAGGTCGTGTTTTGGAGCGGCCCCGAGTCTGCCCCAAAGAGGTGTACGATGTCATGCTGGGGTGCTGGCAGAGGGAA CCACAGCAGCGGTTGAACATCAAGGAGATCTACAAAATCCTCCATGCTTTGGGGAAGGCCACCCCAATCTACCTGGACATTCTTGGCTAG TGGTGGCTGGTGGTCATGAATTCATACTCTGTTGCCTCCTCTCTCCCTGCCTCACATCTCCCTTCCACCTCACAACTCCTTCCATCCTTG >In-frame_ENST00000220509_ENST00000557856_TCGA-A6-2674-01A_VPS18_chr15_41193212_+_NTRK3_chr15_88423659_length(amino acids)=846AA_start in transcript=339_stop in transcript=2879 MASILDEYENSLSRSAVLQPGCPSVGIPHSGYVNAQLEKEVPIFTKQRIDFTPSERITSLVVSSNQLCMSLGKDTLLRIDLGKANEPNHV ELGRKDDAKVHKMFLDHTGSHLLIALSSTEVLYVNRNGQKVRPLARWKGQLVESVGWNKALGTESSTGPILVGTAQGHIFEAELSASEGG LFGPAPDLYFRPLYVLNEEGGPAPVCSLEAERGPDGRSFVIATTRQRLFQFIGRAAEGAEAQGFSGLFAAYTDHPPPFREFPSNLGYSEL AFYTPKLRSAPRAFAWMMGDGVLYGALDCGRPDSLLSEERVWEYPEGVGPGASPPLAIVLTQFHFLLLLADRVEAVCTLTGQVVLRDHFL EKFGPLKHMVKDSSTGQLWAYTERAVFRYHVQREARDVWRTYLDMNRFDLAKEYCRERPDCLDTVLAREADFCFRQRRYLESARCYALTQ SYFEEIALKFLEARQEEALAEFLQRKLASLKPAERTQATLLTTWLTELYLSRLGALQGDPEALTLYRETKECFRTFLSSPRHKEWLFASR ASIHELLASHGDTEHMVYFAVIMQDYERVVAYHCQHEAYEEALAVLARHRDPQLFYKFSPILIRHIPRQLVDAWIEMGSRLDARQLIPAL VNYSQGGEVQQVSQAIRYMEFCVNVLGETEQAIHNYLLSLYARGRPDSLLAYLEQAGASPHRVHYDLKYALRLCAEHGHHRACVHVYKVL ELYEEAVDLALQVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVIECITQGRVLERPRVCPKEVYDVM -------------------------------------------------------------- >In-frame_ENST00000220509_ENST00000357724_TCGA-A6-2674-01A_VPS18_chr15_41193212_+_NTRK3_chr15_88423659_length(transcript)=3024nt_BP=2535nt GCCCGCGTCACGGGGGCGGGAGTCAGCTGAGCTGCCGGGGCGAGGTTGGGATCACCTGGCACCGGCTGAAGGGAGCCTGTGATTTTTTTG TAGCGGGGGCGGGGAGTAAGGTGCAAGACTGCGCCAGATTCAAGGACGAGGGCTGCCCGATTATCTCGCTGCATAAGGCAAGAGCAAGAG GATCCTCAGGATTTTAAAGAGGAGGCGACGGCTGCAGGTTCCCAGGATCTGTCAGAGGCTGGGGAGTTACAGCTTCCATTCTGGGGCGAC GGGGACCCCGGGGGGGTAGCCCTTTTGTAATCCCCAGGCCCCGGACAAAGAGCCCAGAGGCCGGGCACCATGGCGTCCATCCTGGATGAG TACGAGAACTCGCTGTCCCGCTCGGCCGTCTTGCAGCCCGGCTGCCCTAGCGTGGGCATCCCCCACTCGGGGTATGTGAATGCCCAGCTG GAGAAGGAAGTGCCCATCTTCACAAAGCAGCGCATTGACTTCACCCCTTCCGAGCGCATTACCAGTCTTGTCGTCTCCAGCAATCAGCTG TGCATGAGCCTGGGCAAGGATACACTGCTCCGCATTGACTTGGGCAAGGCAAATGAGCCCAACCACGTGGAGCTGGGACGTAAGGATGAC GCAAAAGTTCACAAGATGTTCCTTGACCATACTGGCTCTCACCTGCTGATTGCCCTGAGCAGCACGGAGGTCCTCTACGTGAACCGAAAT GGACAGAAGGTACGGCCACTAGCACGCTGGAAGGGGCAGCTGGTGGAGAGTGTGGGTTGGAACAAGGCACTGGGCACGGAGAGCAGCACA GGCCCCATCCTGGTCGGGACTGCCCAAGGCCACATCTTTGAAGCAGAGCTCTCAGCCAGCGAAGGTGGGCTTTTCGGCCCTGCTCCGGAT CTCTACTTCCGCCCATTGTACGTGCTAAATGAAGAAGGGGGTCCAGCACCTGTGTGCTCCCTTGAGGCCGAGCGGGGCCCTGATGGGCGT AGCTTTGTTATTGCCACCACTCGGCAGCGCCTCTTCCAGTTCATAGGCCGAGCAGCAGAGGGGGCTGAGGCCCAGGGTTTCTCAGGGCTC TTTGCAGCTTACACGGACCACCCACCCCCATTCCGTGAGTTTCCCAGCAACCTGGGCTACAGTGAGTTGGCCTTCTACACCCCCAAGCTG CGCTCCGCACCCCGGGCCTTCGCCTGGATGATGGGGGATGGTGTGTTGTATGGGGCATTGGACTGTGGGCGCCCTGACTCTCTGCTGAGC GAGGAGCGAGTCTGGGAGTACCCAGAGGGGGTAGGGCCTGGGGCCAGCCCACCCCTAGCCATCGTCTTGACCCAGTTCCACTTCCTGCTG CTACTGGCAGACCGGGTGGAGGCAGTGTGCACACTGACCGGGCAGGTGGTGCTGCGGGATCACTTCCTGGAGAAATTTGGGCCGCTGAAG CACATGGTGAAGGACTCCTCCACAGGCCAGCTGTGGGCCTACACTGAGCGGGCTGTCTTCCGCTACCACGTGCAACGGGAGGCCCGAGAT GTCTGGCGCACCTATCTGGACATGAACCGCTTCGATCTGGCCAAAGAGTATTGTCGAGAGCGGCCCGACTGCCTGGACACGGTCCTGGCC CGGGAGGCCGATTTCTGCTTTCGCCAGCGTCGCTACCTGGAGAGCGCACGCTGCTATGCCCTGACCCAGAGCTACTTTGAGGAGATTGCC CTCAAGTTCCTGGAGGCCCGACAGGAGGAGGCTCTGGCTGAGTTCCTGCAGCGAAAACTGGCCAGTTTGAAGCCAGCCGAACGTACCCAG GCCACACTGCTGACCACCTGGCTGACAGAGCTCTACCTGAGCCGGCTTGGGGCTCTGCAGGGCGACCCAGAGGCCCTGACTCTCTACCGA GAAACCAAGGAATGCTTTCGAACCTTCCTCAGCAGCCCCCGCCACAAAGAGTGGCTCTTTGCCAGCCGGGCCTCTATCCATGAGCTGCTC GCCAGTCATGGGGACACAGAACACATGGTGTACTTTGCAGTGATCATGCAGGACTATGAGCGGGTGGTGGCTTACCACTGTCAGCACGAG GCCTACGAGGAGGCCCTGGCCGTGCTCGCCCGCCACCGTGACCCCCAGCTCTTCTACAAGTTCTCACCCATCCTCATCCGTCACATCCCC CGCCAGCTTGTAGATGCCTGGATTGAGATGGGCAGCCGGCTGGATGCTCGTCAGCTCATTCCTGCCCTGGTGAACTACAGCCAGGGTGGT GAGGTCCAGCAGGTGAGCCAGGCCATCCGCTACATGGAGTTCTGCGTGAACGTGCTGGGGGAGACTGAGCAGGCCATCCACAACTACCTG CTGTCACTGTATGCCCGTGGCCGGCCGGACTCACTACTGGCCTATCTGGAGCAGGCTGGGGCCAGCCCCCACCGGGTGCATTACGACCTC AAGTATGCGCTGCGGCTCTGCGCCGAGCATGGCCACCACCGCGCTTGTGTCCATGTCTACAAGGTCCTAGAGCTGTATGAGGAGGCCGTG GACCTGGCCCTGCAGGTGGGAGGACACACCATGCTCCCCATTCGCTGGATGCCTCCTGAAAGCATCATGTACCGGAAGTTCACTACAGAG AGTGATGTATGGAGCTTCGGGGTGATCCTCTGGGAGATCTTCACCTATGGAAAGCAGCCATGGTTCCAACTCTCAAACACGGAGGTCATT GAGTGCATTACCCAAGGTCGTGTTTTGGAGCGGCCCCGAGTCTGCCCCAAAGAGGTGTACGATGTCATGCTGGGGTGCTGGCAGAGGGAA CCACAGCAGCGGTTGAACATCAAGGAGATCTACAAAATCCTCCATGCTTTGGGGAAGGCCACCCCAATCTACCTGGACATTCTTGGCTAG TGGTGGCTGGTGGTCATGAATTCATACTCTGTTGCCTCCTCTCTCCCTGCCTCACATCTCCCTTCCACCTCACAACTCCTTCCATCCTTG >In-frame_ENST00000220509_ENST00000357724_TCGA-A6-2674-01A_VPS18_chr15_41193212_+_NTRK3_chr15_88423659_length(amino acids)=846AA_start in transcript=339_stop in transcript=2879 MASILDEYENSLSRSAVLQPGCPSVGIPHSGYVNAQLEKEVPIFTKQRIDFTPSERITSLVVSSNQLCMSLGKDTLLRIDLGKANEPNHV ELGRKDDAKVHKMFLDHTGSHLLIALSSTEVLYVNRNGQKVRPLARWKGQLVESVGWNKALGTESSTGPILVGTAQGHIFEAELSASEGG LFGPAPDLYFRPLYVLNEEGGPAPVCSLEAERGPDGRSFVIATTRQRLFQFIGRAAEGAEAQGFSGLFAAYTDHPPPFREFPSNLGYSEL AFYTPKLRSAPRAFAWMMGDGVLYGALDCGRPDSLLSEERVWEYPEGVGPGASPPLAIVLTQFHFLLLLADRVEAVCTLTGQVVLRDHFL EKFGPLKHMVKDSSTGQLWAYTERAVFRYHVQREARDVWRTYLDMNRFDLAKEYCRERPDCLDTVLAREADFCFRQRRYLESARCYALTQ SYFEEIALKFLEARQEEALAEFLQRKLASLKPAERTQATLLTTWLTELYLSRLGALQGDPEALTLYRETKECFRTFLSSPRHKEWLFASR ASIHELLASHGDTEHMVYFAVIMQDYERVVAYHCQHEAYEEALAVLARHRDPQLFYKFSPILIRHIPRQLVDAWIEMGSRLDARQLIPAL VNYSQGGEVQQVSQAIRYMEFCVNVLGETEQAIHNYLLSLYARGRPDSLLAYLEQAGASPHRVHYDLKYALRLCAEHGHHRACVHVYKVL ELYEEAVDLALQVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVIECITQGRVLERPRVCPKEVYDVM -------------------------------------------------------------- >In-frame_ENST00000220509_ENST00000355254_TCGA-A6-2674-01A_VPS18_chr15_41193212_+_NTRK3_chr15_88423659_length(transcript)=3024nt_BP=2535nt GCCCGCGTCACGGGGGCGGGAGTCAGCTGAGCTGCCGGGGCGAGGTTGGGATCACCTGGCACCGGCTGAAGGGAGCCTGTGATTTTTTTG TAGCGGGGGCGGGGAGTAAGGTGCAAGACTGCGCCAGATTCAAGGACGAGGGCTGCCCGATTATCTCGCTGCATAAGGCAAGAGCAAGAG GATCCTCAGGATTTTAAAGAGGAGGCGACGGCTGCAGGTTCCCAGGATCTGTCAGAGGCTGGGGAGTTACAGCTTCCATTCTGGGGCGAC GGGGACCCCGGGGGGGTAGCCCTTTTGTAATCCCCAGGCCCCGGACAAAGAGCCCAGAGGCCGGGCACCATGGCGTCCATCCTGGATGAG TACGAGAACTCGCTGTCCCGCTCGGCCGTCTTGCAGCCCGGCTGCCCTAGCGTGGGCATCCCCCACTCGGGGTATGTGAATGCCCAGCTG GAGAAGGAAGTGCCCATCTTCACAAAGCAGCGCATTGACTTCACCCCTTCCGAGCGCATTACCAGTCTTGTCGTCTCCAGCAATCAGCTG TGCATGAGCCTGGGCAAGGATACACTGCTCCGCATTGACTTGGGCAAGGCAAATGAGCCCAACCACGTGGAGCTGGGACGTAAGGATGAC GCAAAAGTTCACAAGATGTTCCTTGACCATACTGGCTCTCACCTGCTGATTGCCCTGAGCAGCACGGAGGTCCTCTACGTGAACCGAAAT GGACAGAAGGTACGGCCACTAGCACGCTGGAAGGGGCAGCTGGTGGAGAGTGTGGGTTGGAACAAGGCACTGGGCACGGAGAGCAGCACA GGCCCCATCCTGGTCGGGACTGCCCAAGGCCACATCTTTGAAGCAGAGCTCTCAGCCAGCGAAGGTGGGCTTTTCGGCCCTGCTCCGGAT CTCTACTTCCGCCCATTGTACGTGCTAAATGAAGAAGGGGGTCCAGCACCTGTGTGCTCCCTTGAGGCCGAGCGGGGCCCTGATGGGCGT AGCTTTGTTATTGCCACCACTCGGCAGCGCCTCTTCCAGTTCATAGGCCGAGCAGCAGAGGGGGCTGAGGCCCAGGGTTTCTCAGGGCTC TTTGCAGCTTACACGGACCACCCACCCCCATTCCGTGAGTTTCCCAGCAACCTGGGCTACAGTGAGTTGGCCTTCTACACCCCCAAGCTG CGCTCCGCACCCCGGGCCTTCGCCTGGATGATGGGGGATGGTGTGTTGTATGGGGCATTGGACTGTGGGCGCCCTGACTCTCTGCTGAGC GAGGAGCGAGTCTGGGAGTACCCAGAGGGGGTAGGGCCTGGGGCCAGCCCACCCCTAGCCATCGTCTTGACCCAGTTCCACTTCCTGCTG CTACTGGCAGACCGGGTGGAGGCAGTGTGCACACTGACCGGGCAGGTGGTGCTGCGGGATCACTTCCTGGAGAAATTTGGGCCGCTGAAG CACATGGTGAAGGACTCCTCCACAGGCCAGCTGTGGGCCTACACTGAGCGGGCTGTCTTCCGCTACCACGTGCAACGGGAGGCCCGAGAT GTCTGGCGCACCTATCTGGACATGAACCGCTTCGATCTGGCCAAAGAGTATTGTCGAGAGCGGCCCGACTGCCTGGACACGGTCCTGGCC CGGGAGGCCGATTTCTGCTTTCGCCAGCGTCGCTACCTGGAGAGCGCACGCTGCTATGCCCTGACCCAGAGCTACTTTGAGGAGATTGCC CTCAAGTTCCTGGAGGCCCGACAGGAGGAGGCTCTGGCTGAGTTCCTGCAGCGAAAACTGGCCAGTTTGAAGCCAGCCGAACGTACCCAG GCCACACTGCTGACCACCTGGCTGACAGAGCTCTACCTGAGCCGGCTTGGGGCTCTGCAGGGCGACCCAGAGGCCCTGACTCTCTACCGA GAAACCAAGGAATGCTTTCGAACCTTCCTCAGCAGCCCCCGCCACAAAGAGTGGCTCTTTGCCAGCCGGGCCTCTATCCATGAGCTGCTC GCCAGTCATGGGGACACAGAACACATGGTGTACTTTGCAGTGATCATGCAGGACTATGAGCGGGTGGTGGCTTACCACTGTCAGCACGAG GCCTACGAGGAGGCCCTGGCCGTGCTCGCCCGCCACCGTGACCCCCAGCTCTTCTACAAGTTCTCACCCATCCTCATCCGTCACATCCCC CGCCAGCTTGTAGATGCCTGGATTGAGATGGGCAGCCGGCTGGATGCTCGTCAGCTCATTCCTGCCCTGGTGAACTACAGCCAGGGTGGT GAGGTCCAGCAGGTGAGCCAGGCCATCCGCTACATGGAGTTCTGCGTGAACGTGCTGGGGGAGACTGAGCAGGCCATCCACAACTACCTG CTGTCACTGTATGCCCGTGGCCGGCCGGACTCACTACTGGCCTATCTGGAGCAGGCTGGGGCCAGCCCCCACCGGGTGCATTACGACCTC AAGTATGCGCTGCGGCTCTGCGCCGAGCATGGCCACCACCGCGCTTGTGTCCATGTCTACAAGGTCCTAGAGCTGTATGAGGAGGCCGTG GACCTGGCCCTGCAGGTGGGAGGACACACCATGCTCCCCATTCGCTGGATGCCTCCTGAAAGCATCATGTACCGGAAGTTCACTACAGAG AGTGATGTATGGAGCTTCGGGGTGATCCTCTGGGAGATCTTCACCTATGGAAAGCAGCCATGGTTCCAACTCTCAAACACGGAGGTCATT GAGTGCATTACCCAAGGTCGTGTTTTGGAGCGGCCCCGAGTCTGCCCCAAAGAGGTGTACGATGTCATGCTGGGGTGCTGGCAGAGGGAA CCACAGCAGCGGTTGAACATCAAGGAGATCTACAAAATCCTCCATGCTTTGGGGAAGGCCACCCCAATCTACCTGGACATTCTTGGCTAG TGGTGGCTGGTGGTCATGAATTCATACTCTGTTGCCTCCTCTCTCCCTGCCTCACATCTCCCTTCCACCTCACAACTCCTTCCATCCTTG >In-frame_ENST00000220509_ENST00000355254_TCGA-A6-2674-01A_VPS18_chr15_41193212_+_NTRK3_chr15_88423659_length(amino acids)=846AA_start in transcript=339_stop in transcript=2879 MASILDEYENSLSRSAVLQPGCPSVGIPHSGYVNAQLEKEVPIFTKQRIDFTPSERITSLVVSSNQLCMSLGKDTLLRIDLGKANEPNHV ELGRKDDAKVHKMFLDHTGSHLLIALSSTEVLYVNRNGQKVRPLARWKGQLVESVGWNKALGTESSTGPILVGTAQGHIFEAELSASEGG LFGPAPDLYFRPLYVLNEEGGPAPVCSLEAERGPDGRSFVIATTRQRLFQFIGRAAEGAEAQGFSGLFAAYTDHPPPFREFPSNLGYSEL AFYTPKLRSAPRAFAWMMGDGVLYGALDCGRPDSLLSEERVWEYPEGVGPGASPPLAIVLTQFHFLLLLADRVEAVCTLTGQVVLRDHFL EKFGPLKHMVKDSSTGQLWAYTERAVFRYHVQREARDVWRTYLDMNRFDLAKEYCRERPDCLDTVLAREADFCFRQRRYLESARCYALTQ SYFEEIALKFLEARQEEALAEFLQRKLASLKPAERTQATLLTTWLTELYLSRLGALQGDPEALTLYRETKECFRTFLSSPRHKEWLFASR ASIHELLASHGDTEHMVYFAVIMQDYERVVAYHCQHEAYEEALAVLARHRDPQLFYKFSPILIRHIPRQLVDAWIEMGSRLDARQLIPAL VNYSQGGEVQQVSQAIRYMEFCVNVLGETEQAIHNYLLSLYARGRPDSLLAYLEQAGASPHRVHYDLKYALRLCAEHGHHRACVHVYKVL ELYEEAVDLALQVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVIECITQGRVLERPRVCPKEVYDVM -------------------------------------------------------------- >In-frame_ENST00000220509_ENST00000360948_TCGA-A6-2674-01A_VPS18_chr15_41193212_+_NTRK3_chr15_88423659_length(transcript)=3024nt_BP=2535nt GCCCGCGTCACGGGGGCGGGAGTCAGCTGAGCTGCCGGGGCGAGGTTGGGATCACCTGGCACCGGCTGAAGGGAGCCTGTGATTTTTTTG TAGCGGGGGCGGGGAGTAAGGTGCAAGACTGCGCCAGATTCAAGGACGAGGGCTGCCCGATTATCTCGCTGCATAAGGCAAGAGCAAGAG GATCCTCAGGATTTTAAAGAGGAGGCGACGGCTGCAGGTTCCCAGGATCTGTCAGAGGCTGGGGAGTTACAGCTTCCATTCTGGGGCGAC GGGGACCCCGGGGGGGTAGCCCTTTTGTAATCCCCAGGCCCCGGACAAAGAGCCCAGAGGCCGGGCACCATGGCGTCCATCCTGGATGAG TACGAGAACTCGCTGTCCCGCTCGGCCGTCTTGCAGCCCGGCTGCCCTAGCGTGGGCATCCCCCACTCGGGGTATGTGAATGCCCAGCTG GAGAAGGAAGTGCCCATCTTCACAAAGCAGCGCATTGACTTCACCCCTTCCGAGCGCATTACCAGTCTTGTCGTCTCCAGCAATCAGCTG TGCATGAGCCTGGGCAAGGATACACTGCTCCGCATTGACTTGGGCAAGGCAAATGAGCCCAACCACGTGGAGCTGGGACGTAAGGATGAC GCAAAAGTTCACAAGATGTTCCTTGACCATACTGGCTCTCACCTGCTGATTGCCCTGAGCAGCACGGAGGTCCTCTACGTGAACCGAAAT GGACAGAAGGTACGGCCACTAGCACGCTGGAAGGGGCAGCTGGTGGAGAGTGTGGGTTGGAACAAGGCACTGGGCACGGAGAGCAGCACA GGCCCCATCCTGGTCGGGACTGCCCAAGGCCACATCTTTGAAGCAGAGCTCTCAGCCAGCGAAGGTGGGCTTTTCGGCCCTGCTCCGGAT CTCTACTTCCGCCCATTGTACGTGCTAAATGAAGAAGGGGGTCCAGCACCTGTGTGCTCCCTTGAGGCCGAGCGGGGCCCTGATGGGCGT AGCTTTGTTATTGCCACCACTCGGCAGCGCCTCTTCCAGTTCATAGGCCGAGCAGCAGAGGGGGCTGAGGCCCAGGGTTTCTCAGGGCTC TTTGCAGCTTACACGGACCACCCACCCCCATTCCGTGAGTTTCCCAGCAACCTGGGCTACAGTGAGTTGGCCTTCTACACCCCCAAGCTG CGCTCCGCACCCCGGGCCTTCGCCTGGATGATGGGGGATGGTGTGTTGTATGGGGCATTGGACTGTGGGCGCCCTGACTCTCTGCTGAGC GAGGAGCGAGTCTGGGAGTACCCAGAGGGGGTAGGGCCTGGGGCCAGCCCACCCCTAGCCATCGTCTTGACCCAGTTCCACTTCCTGCTG CTACTGGCAGACCGGGTGGAGGCAGTGTGCACACTGACCGGGCAGGTGGTGCTGCGGGATCACTTCCTGGAGAAATTTGGGCCGCTGAAG CACATGGTGAAGGACTCCTCCACAGGCCAGCTGTGGGCCTACACTGAGCGGGCTGTCTTCCGCTACCACGTGCAACGGGAGGCCCGAGAT GTCTGGCGCACCTATCTGGACATGAACCGCTTCGATCTGGCCAAAGAGTATTGTCGAGAGCGGCCCGACTGCCTGGACACGGTCCTGGCC CGGGAGGCCGATTTCTGCTTTCGCCAGCGTCGCTACCTGGAGAGCGCACGCTGCTATGCCCTGACCCAGAGCTACTTTGAGGAGATTGCC CTCAAGTTCCTGGAGGCCCGACAGGAGGAGGCTCTGGCTGAGTTCCTGCAGCGAAAACTGGCCAGTTTGAAGCCAGCCGAACGTACCCAG GCCACACTGCTGACCACCTGGCTGACAGAGCTCTACCTGAGCCGGCTTGGGGCTCTGCAGGGCGACCCAGAGGCCCTGACTCTCTACCGA GAAACCAAGGAATGCTTTCGAACCTTCCTCAGCAGCCCCCGCCACAAAGAGTGGCTCTTTGCCAGCCGGGCCTCTATCCATGAGCTGCTC GCCAGTCATGGGGACACAGAACACATGGTGTACTTTGCAGTGATCATGCAGGACTATGAGCGGGTGGTGGCTTACCACTGTCAGCACGAG GCCTACGAGGAGGCCCTGGCCGTGCTCGCCCGCCACCGTGACCCCCAGCTCTTCTACAAGTTCTCACCCATCCTCATCCGTCACATCCCC CGCCAGCTTGTAGATGCCTGGATTGAGATGGGCAGCCGGCTGGATGCTCGTCAGCTCATTCCTGCCCTGGTGAACTACAGCCAGGGTGGT GAGGTCCAGCAGGTGAGCCAGGCCATCCGCTACATGGAGTTCTGCGTGAACGTGCTGGGGGAGACTGAGCAGGCCATCCACAACTACCTG CTGTCACTGTATGCCCGTGGCCGGCCGGACTCACTACTGGCCTATCTGGAGCAGGCTGGGGCCAGCCCCCACCGGGTGCATTACGACCTC AAGTATGCGCTGCGGCTCTGCGCCGAGCATGGCCACCACCGCGCTTGTGTCCATGTCTACAAGGTCCTAGAGCTGTATGAGGAGGCCGTG GACCTGGCCCTGCAGGTGGGAGGACACACCATGCTCCCCATTCGCTGGATGCCTCCTGAAAGCATCATGTACCGGAAGTTCACTACAGAG AGTGATGTATGGAGCTTCGGGGTGATCCTCTGGGAGATCTTCACCTATGGAAAGCAGCCATGGTTCCAACTCTCAAACACGGAGGTCATT GAGTGCATTACCCAAGGTCGTGTTTTGGAGCGGCCCCGAGTCTGCCCCAAAGAGGTGTACGATGTCATGCTGGGGTGCTGGCAGAGGGAA CCACAGCAGCGGTTGAACATCAAGGAGATCTACAAAATCCTCCATGCTTTGGGGAAGGCCACCCCAATCTACCTGGACATTCTTGGCTAG TGGTGGCTGGTGGTCATGAATTCATACTCTGTTGCCTCCTCTCTCCCTGCCTCACATCTCCCTTCCACCTCACAACTCCTTCCATCCTTG >In-frame_ENST00000220509_ENST00000360948_TCGA-A6-2674-01A_VPS18_chr15_41193212_+_NTRK3_chr15_88423659_length(amino acids)=846AA_start in transcript=339_stop in transcript=2879 MASILDEYENSLSRSAVLQPGCPSVGIPHSGYVNAQLEKEVPIFTKQRIDFTPSERITSLVVSSNQLCMSLGKDTLLRIDLGKANEPNHV ELGRKDDAKVHKMFLDHTGSHLLIALSSTEVLYVNRNGQKVRPLARWKGQLVESVGWNKALGTESSTGPILVGTAQGHIFEAELSASEGG LFGPAPDLYFRPLYVLNEEGGPAPVCSLEAERGPDGRSFVIATTRQRLFQFIGRAAEGAEAQGFSGLFAAYTDHPPPFREFPSNLGYSEL AFYTPKLRSAPRAFAWMMGDGVLYGALDCGRPDSLLSEERVWEYPEGVGPGASPPLAIVLTQFHFLLLLADRVEAVCTLTGQVVLRDHFL EKFGPLKHMVKDSSTGQLWAYTERAVFRYHVQREARDVWRTYLDMNRFDLAKEYCRERPDCLDTVLAREADFCFRQRRYLESARCYALTQ SYFEEIALKFLEARQEEALAEFLQRKLASLKPAERTQATLLTTWLTELYLSRLGALQGDPEALTLYRETKECFRTFLSSPRHKEWLFASR ASIHELLASHGDTEHMVYFAVIMQDYERVVAYHCQHEAYEEALAVLARHRDPQLFYKFSPILIRHIPRQLVDAWIEMGSRLDARQLIPAL VNYSQGGEVQQVSQAIRYMEFCVNVLGETEQAIHNYLLSLYARGRPDSLLAYLEQAGASPHRVHYDLKYALRLCAEHGHHRACVHVYKVL ELYEEAVDLALQVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVIECITQGRVLERPRVCPKEVYDVM -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for VPS18-NTRK3 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for VPS18-NTRK3 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Tgene | NTRK3 | Q16288 | DB11986 | Entrectinib | Inhibitor | Small molecule | Approved|Investigational |
Tgene | NTRK3 | Q16288 | DB11986 | Entrectinib | Inhibitor | Small molecule | Approved|Investigational |
Tgene | NTRK3 | Q16288 | DB12010 | Fostamatinib | Inhibitor | Small molecule | Approved|Investigational |
Tgene | NTRK3 | Q16288 | DB12010 | Fostamatinib | Inhibitor | Small molecule | Approved|Investigational |
Tgene | NTRK3 | Q16288 | DB14723 | Larotrectinib | Inhibitor | Small molecule | Approved|Investigational |
Tgene | NTRK3 | Q16288 | DB14723 | Larotrectinib | Inhibitor | Small molecule | Approved|Investigational |
Tgene | NTRK3 | Q16288 | DB15822 | Pralsetinib | Inhibitor | Small molecule | Approved|Investigational |
Tgene | NTRK3 | Q16288 | DB15822 | Pralsetinib | Inhibitor | Small molecule | Approved|Investigational |
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Related Diseases for VPS18-NTRK3 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | NTRK3 | C0036341 | Schizophrenia | 3 | PSYGENET |
Tgene | NTRK3 | C0041696 | Unipolar Depression | 2 | PSYGENET |
Tgene | NTRK3 | C1269683 | Major Depressive Disorder | 2 | PSYGENET |
Tgene | NTRK3 | C1332965 | Congenital Mesoblastic Nephroma | 2 | ORPHANET |
Tgene | NTRK3 | C0014175 | Endometriosis | 1 | CTD_human |
Tgene | NTRK3 | C0017638 | Glioma | 1 | CTD_human |
Tgene | NTRK3 | C0019569 | Hirschsprung Disease | 1 | GENOMICS_ENGLAND |
Tgene | NTRK3 | C0023467 | Leukemia, Myelocytic, Acute | 1 | CTD_human |
Tgene | NTRK3 | C0026998 | Acute Myeloid Leukemia, M1 | 1 | CTD_human |
Tgene | NTRK3 | C0038220 | Status Epilepticus | 1 | CTD_human |
Tgene | NTRK3 | C0238463 | Papillary thyroid carcinoma | 1 | ORPHANET |
Tgene | NTRK3 | C0259783 | mixed gliomas | 1 | CTD_human |
Tgene | NTRK3 | C0269102 | Endometrioma | 1 | CTD_human |
Tgene | NTRK3 | C0270823 | Petit mal status | 1 | CTD_human |
Tgene | NTRK3 | C0311335 | Grand Mal Status Epilepticus | 1 | CTD_human |
Tgene | NTRK3 | C0393734 | Complex Partial Status Epilepticus | 1 | CTD_human |
Tgene | NTRK3 | C0525045 | Mood Disorders | 1 | PSYGENET |
Tgene | NTRK3 | C0555198 | Malignant Glioma | 1 | CTD_human |
Tgene | NTRK3 | C0751522 | Status Epilepticus, Subclinical | 1 | CTD_human |
Tgene | NTRK3 | C0751523 | Non-Convulsive Status Epilepticus | 1 | CTD_human |
Tgene | NTRK3 | C0751524 | Simple Partial Status Epilepticus | 1 | CTD_human |
Tgene | NTRK3 | C1879321 | Acute Myeloid Leukemia (AML-M2) | 1 | CTD_human |