|
Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:WAC-APBB1IP (FusionGDB2 ID:97988) |
Fusion Gene Summary for WAC-APBB1IP |
Fusion gene summary |
Fusion gene information | Fusion gene name: WAC-APBB1IP | Fusion gene ID: 97988 | Hgene | Tgene | Gene symbol | WAC | APBB1IP | Gene ID | 51322 | 54518 |
Gene name | WW domain containing adaptor with coiled-coil | amyloid beta precursor protein binding family B member 1 interacting protein | |
Synonyms | BM-016|DESSH|PRO1741|Wwp4 | INAG1|PREL1|RARP1|RIAM | |
Cytomap | 10p12.1|10p12.1-p11.2 | 10p12.1 | |
Type of gene | protein-coding | protein-coding | |
Description | WW domain-containing adapter protein with coiled-coil | amyloid beta A4 precursor protein-binding family B member 1-interacting proteinAPBB1-interacting protein 1PREL-1RARP-1Rap1-GTP-interacting adaptor moleculeRap1-interacting adaptor moleculeproline rich EVH1 ligand 1proline-rich protein 73rap1-GTP-i | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | Q7Z5R6 | |
Ensembl transtripts involved in fusion gene | ENST00000375664, ENST00000375646, ENST00000347934, ENST00000354911, ENST00000428935, ENST00000532233, | ENST00000376236, ENST00000356785, ENST00000493857, | |
Fusion gene scores | * DoF score | 17 X 16 X 8=2176 | 6 X 9 X 5=270 |
# samples | 22 | 7 | |
** MAII score | log2(22/2176*10)=-3.30610312772568 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(7/270*10)=-1.94753258010586 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: WAC [Title/Abstract] AND APBB1IP [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | WAC(28824686)-APBB1IP(26849034), # samples:2 WAC(28872434)-APBB1IP(26855890), # samples:2 APBB1IP(26727782)-WAC(28897115), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | WAC-APBB1IP seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. WAC-APBB1IP seems lost the major protein functional domain in Hgene partner, which is a epigenetic factor due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene breakpoints across WAC (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across APBB1IP (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | BRCA | TCGA-AO-A0JI-01A | WAC | chr10 | 28824686 | + | APBB1IP | chr10 | 26849034 | + |
ChimerDB4 | BRCA | TCGA-E9-A1NA-01A | WAC | chr10 | 28872434 | + | APBB1IP | chr10 | 26855890 | + |
ChimerDB4 | BRCA | TCGA-E9-A1NA-01A | WAC | chr10 | 28872436 | + | APBB1IP | chr10 | 26855885 | + |
ChimerDB4 | BRCA | TCGA-AO-A0JI-01A | WAC | chr10 | 28824686 | - | APBB1IP | chr10 | 26849034 | + |
ChimerDB4 | BRCA | TCGA-E9-A1NA-01A | WAC | chr10 | 28872434 | - | APBB1IP | chr10 | 26855890 | + |
ChimerDB4 | BRCA | TCGA-AO-A0JI-01A | WAC | chr10 | 28824685 | + | APBB1IP | chr10 | 26849033 | + |
Top |
Fusion Gene ORF analysis for WAC-APBB1IP |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000375664 | ENST00000376236 | WAC | chr10 | 28824686 | + | APBB1IP | chr10 | 26849034 | + |
5CDS-intron | ENST00000375664 | ENST00000356785 | WAC | chr10 | 28824686 | + | APBB1IP | chr10 | 26849034 | + |
5CDS-intron | ENST00000375664 | ENST00000493857 | WAC | chr10 | 28824686 | + | APBB1IP | chr10 | 26849034 | + |
Frame-shift | ENST00000375646 | ENST00000376236 | WAC | chr10 | 28824686 | + | APBB1IP | chr10 | 26849034 | + |
5CDS-intron | ENST00000375646 | ENST00000356785 | WAC | chr10 | 28824686 | + | APBB1IP | chr10 | 26849034 | + |
5CDS-intron | ENST00000375646 | ENST00000493857 | WAC | chr10 | 28824686 | + | APBB1IP | chr10 | 26849034 | + |
Frame-shift | ENST00000347934 | ENST00000376236 | WAC | chr10 | 28824686 | + | APBB1IP | chr10 | 26849034 | + |
5CDS-intron | ENST00000347934 | ENST00000356785 | WAC | chr10 | 28824686 | + | APBB1IP | chr10 | 26849034 | + |
5CDS-intron | ENST00000347934 | ENST00000493857 | WAC | chr10 | 28824686 | + | APBB1IP | chr10 | 26849034 | + |
Frame-shift | ENST00000354911 | ENST00000376236 | WAC | chr10 | 28824686 | + | APBB1IP | chr10 | 26849034 | + |
5CDS-intron | ENST00000354911 | ENST00000356785 | WAC | chr10 | 28824686 | + | APBB1IP | chr10 | 26849034 | + |
5CDS-intron | ENST00000354911 | ENST00000493857 | WAC | chr10 | 28824686 | + | APBB1IP | chr10 | 26849034 | + |
Frame-shift | ENST00000428935 | ENST00000376236 | WAC | chr10 | 28824686 | + | APBB1IP | chr10 | 26849034 | + |
5CDS-intron | ENST00000428935 | ENST00000356785 | WAC | chr10 | 28824686 | + | APBB1IP | chr10 | 26849034 | + |
5CDS-intron | ENST00000428935 | ENST00000493857 | WAC | chr10 | 28824686 | + | APBB1IP | chr10 | 26849034 | + |
3UTR-3CDS | ENST00000532233 | ENST00000376236 | WAC | chr10 | 28824686 | + | APBB1IP | chr10 | 26849034 | + |
3UTR-intron | ENST00000532233 | ENST00000356785 | WAC | chr10 | 28824686 | + | APBB1IP | chr10 | 26849034 | + |
3UTR-intron | ENST00000532233 | ENST00000493857 | WAC | chr10 | 28824686 | + | APBB1IP | chr10 | 26849034 | + |
In-frame | ENST00000375664 | ENST00000376236 | WAC | chr10 | 28872434 | + | APBB1IP | chr10 | 26855890 | + |
5CDS-intron | ENST00000375664 | ENST00000356785 | WAC | chr10 | 28872434 | + | APBB1IP | chr10 | 26855890 | + |
5CDS-3UTR | ENST00000375664 | ENST00000493857 | WAC | chr10 | 28872434 | + | APBB1IP | chr10 | 26855890 | + |
In-frame | ENST00000375646 | ENST00000376236 | WAC | chr10 | 28872434 | + | APBB1IP | chr10 | 26855890 | + |
5CDS-intron | ENST00000375646 | ENST00000356785 | WAC | chr10 | 28872434 | + | APBB1IP | chr10 | 26855890 | + |
5CDS-3UTR | ENST00000375646 | ENST00000493857 | WAC | chr10 | 28872434 | + | APBB1IP | chr10 | 26855890 | + |
In-frame | ENST00000347934 | ENST00000376236 | WAC | chr10 | 28872434 | + | APBB1IP | chr10 | 26855890 | + |
5CDS-intron | ENST00000347934 | ENST00000356785 | WAC | chr10 | 28872434 | + | APBB1IP | chr10 | 26855890 | + |
5CDS-3UTR | ENST00000347934 | ENST00000493857 | WAC | chr10 | 28872434 | + | APBB1IP | chr10 | 26855890 | + |
In-frame | ENST00000354911 | ENST00000376236 | WAC | chr10 | 28872434 | + | APBB1IP | chr10 | 26855890 | + |
5CDS-intron | ENST00000354911 | ENST00000356785 | WAC | chr10 | 28872434 | + | APBB1IP | chr10 | 26855890 | + |
5CDS-3UTR | ENST00000354911 | ENST00000493857 | WAC | chr10 | 28872434 | + | APBB1IP | chr10 | 26855890 | + |
In-frame | ENST00000428935 | ENST00000376236 | WAC | chr10 | 28872434 | + | APBB1IP | chr10 | 26855890 | + |
5CDS-intron | ENST00000428935 | ENST00000356785 | WAC | chr10 | 28872434 | + | APBB1IP | chr10 | 26855890 | + |
5CDS-3UTR | ENST00000428935 | ENST00000493857 | WAC | chr10 | 28872434 | + | APBB1IP | chr10 | 26855890 | + |
intron-3CDS | ENST00000532233 | ENST00000376236 | WAC | chr10 | 28872434 | + | APBB1IP | chr10 | 26855890 | + |
intron-intron | ENST00000532233 | ENST00000356785 | WAC | chr10 | 28872434 | + | APBB1IP | chr10 | 26855890 | + |
intron-3UTR | ENST00000532233 | ENST00000493857 | WAC | chr10 | 28872434 | + | APBB1IP | chr10 | 26855890 | + |
In-frame | ENST00000375664 | ENST00000376236 | WAC | chr10 | 28872436 | + | APBB1IP | chr10 | 26855885 | + |
5CDS-intron | ENST00000375664 | ENST00000356785 | WAC | chr10 | 28872436 | + | APBB1IP | chr10 | 26855885 | + |
5CDS-3UTR | ENST00000375664 | ENST00000493857 | WAC | chr10 | 28872436 | + | APBB1IP | chr10 | 26855885 | + |
In-frame | ENST00000375646 | ENST00000376236 | WAC | chr10 | 28872436 | + | APBB1IP | chr10 | 26855885 | + |
5CDS-intron | ENST00000375646 | ENST00000356785 | WAC | chr10 | 28872436 | + | APBB1IP | chr10 | 26855885 | + |
5CDS-3UTR | ENST00000375646 | ENST00000493857 | WAC | chr10 | 28872436 | + | APBB1IP | chr10 | 26855885 | + |
In-frame | ENST00000347934 | ENST00000376236 | WAC | chr10 | 28872436 | + | APBB1IP | chr10 | 26855885 | + |
5CDS-intron | ENST00000347934 | ENST00000356785 | WAC | chr10 | 28872436 | + | APBB1IP | chr10 | 26855885 | + |
5CDS-3UTR | ENST00000347934 | ENST00000493857 | WAC | chr10 | 28872436 | + | APBB1IP | chr10 | 26855885 | + |
In-frame | ENST00000354911 | ENST00000376236 | WAC | chr10 | 28872436 | + | APBB1IP | chr10 | 26855885 | + |
5CDS-intron | ENST00000354911 | ENST00000356785 | WAC | chr10 | 28872436 | + | APBB1IP | chr10 | 26855885 | + |
5CDS-3UTR | ENST00000354911 | ENST00000493857 | WAC | chr10 | 28872436 | + | APBB1IP | chr10 | 26855885 | + |
In-frame | ENST00000428935 | ENST00000376236 | WAC | chr10 | 28872436 | + | APBB1IP | chr10 | 26855885 | + |
5CDS-intron | ENST00000428935 | ENST00000356785 | WAC | chr10 | 28872436 | + | APBB1IP | chr10 | 26855885 | + |
5CDS-3UTR | ENST00000428935 | ENST00000493857 | WAC | chr10 | 28872436 | + | APBB1IP | chr10 | 26855885 | + |
intron-3CDS | ENST00000532233 | ENST00000376236 | WAC | chr10 | 28872436 | + | APBB1IP | chr10 | 26855885 | + |
intron-intron | ENST00000532233 | ENST00000356785 | WAC | chr10 | 28872436 | + | APBB1IP | chr10 | 26855885 | + |
intron-3UTR | ENST00000532233 | ENST00000493857 | WAC | chr10 | 28872436 | + | APBB1IP | chr10 | 26855885 | + |
Frame-shift | ENST00000375664 | ENST00000376236 | WAC | chr10 | 28824685 | + | APBB1IP | chr10 | 26849033 | + |
5CDS-intron | ENST00000375664 | ENST00000356785 | WAC | chr10 | 28824685 | + | APBB1IP | chr10 | 26849033 | + |
5CDS-intron | ENST00000375664 | ENST00000493857 | WAC | chr10 | 28824685 | + | APBB1IP | chr10 | 26849033 | + |
Frame-shift | ENST00000375646 | ENST00000376236 | WAC | chr10 | 28824685 | + | APBB1IP | chr10 | 26849033 | + |
5CDS-intron | ENST00000375646 | ENST00000356785 | WAC | chr10 | 28824685 | + | APBB1IP | chr10 | 26849033 | + |
5CDS-intron | ENST00000375646 | ENST00000493857 | WAC | chr10 | 28824685 | + | APBB1IP | chr10 | 26849033 | + |
Frame-shift | ENST00000347934 | ENST00000376236 | WAC | chr10 | 28824685 | + | APBB1IP | chr10 | 26849033 | + |
5CDS-intron | ENST00000347934 | ENST00000356785 | WAC | chr10 | 28824685 | + | APBB1IP | chr10 | 26849033 | + |
5CDS-intron | ENST00000347934 | ENST00000493857 | WAC | chr10 | 28824685 | + | APBB1IP | chr10 | 26849033 | + |
Frame-shift | ENST00000354911 | ENST00000376236 | WAC | chr10 | 28824685 | + | APBB1IP | chr10 | 26849033 | + |
5CDS-intron | ENST00000354911 | ENST00000356785 | WAC | chr10 | 28824685 | + | APBB1IP | chr10 | 26849033 | + |
5CDS-intron | ENST00000354911 | ENST00000493857 | WAC | chr10 | 28824685 | + | APBB1IP | chr10 | 26849033 | + |
Frame-shift | ENST00000428935 | ENST00000376236 | WAC | chr10 | 28824685 | + | APBB1IP | chr10 | 26849033 | + |
5CDS-intron | ENST00000428935 | ENST00000356785 | WAC | chr10 | 28824685 | + | APBB1IP | chr10 | 26849033 | + |
5CDS-intron | ENST00000428935 | ENST00000493857 | WAC | chr10 | 28824685 | + | APBB1IP | chr10 | 26849033 | + |
3UTR-3CDS | ENST00000532233 | ENST00000376236 | WAC | chr10 | 28824685 | + | APBB1IP | chr10 | 26849033 | + |
3UTR-intron | ENST00000532233 | ENST00000356785 | WAC | chr10 | 28824685 | + | APBB1IP | chr10 | 26849033 | + |
3UTR-intron | ENST00000532233 | ENST00000493857 | WAC | chr10 | 28824685 | + | APBB1IP | chr10 | 26849033 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000375664 | WAC | chr10 | 28872434 | + | ENST00000376236 | APBB1IP | chr10 | 26855890 | + | 1698 | 855 | 457 | 1347 | 296 |
ENST00000375646 | WAC | chr10 | 28872434 | + | ENST00000376236 | APBB1IP | chr10 | 26855890 | + | 1407 | 564 | 166 | 1056 | 296 |
ENST00000347934 | WAC | chr10 | 28872434 | + | ENST00000376236 | APBB1IP | chr10 | 26855890 | + | 1491 | 648 | 171 | 1175 | 334 |
ENST00000354911 | WAC | chr10 | 28872434 | + | ENST00000376236 | APBB1IP | chr10 | 26855890 | + | 1385 | 542 | 65 | 1069 | 334 |
ENST00000428935 | WAC | chr10 | 28872434 | + | ENST00000376236 | APBB1IP | chr10 | 26855890 | + | 1309 | 466 | 16 | 993 | 325 |
ENST00000375664 | WAC | chr10 | 28872436 | + | ENST00000376236 | APBB1IP | chr10 | 26855885 | + | 1698 | 855 | 457 | 1347 | 296 |
ENST00000375646 | WAC | chr10 | 28872436 | + | ENST00000376236 | APBB1IP | chr10 | 26855885 | + | 1407 | 564 | 166 | 1056 | 296 |
ENST00000347934 | WAC | chr10 | 28872436 | + | ENST00000376236 | APBB1IP | chr10 | 26855885 | + | 1491 | 648 | 171 | 1175 | 334 |
ENST00000354911 | WAC | chr10 | 28872436 | + | ENST00000376236 | APBB1IP | chr10 | 26855885 | + | 1385 | 542 | 65 | 1069 | 334 |
ENST00000428935 | WAC | chr10 | 28872436 | + | ENST00000376236 | APBB1IP | chr10 | 26855885 | + | 1309 | 466 | 16 | 993 | 325 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000375664 | ENST00000376236 | WAC | chr10 | 28872434 | + | APBB1IP | chr10 | 26855890 | + | 0.035680585 | 0.9643194 |
ENST00000375646 | ENST00000376236 | WAC | chr10 | 28872434 | + | APBB1IP | chr10 | 26855890 | + | 0.035099924 | 0.9649001 |
ENST00000347934 | ENST00000376236 | WAC | chr10 | 28872434 | + | APBB1IP | chr10 | 26855890 | + | 0.02765522 | 0.97234476 |
ENST00000354911 | ENST00000376236 | WAC | chr10 | 28872434 | + | APBB1IP | chr10 | 26855890 | + | 0.026214724 | 0.9737853 |
ENST00000428935 | ENST00000376236 | WAC | chr10 | 28872434 | + | APBB1IP | chr10 | 26855890 | + | 0.02436246 | 0.97563756 |
ENST00000375664 | ENST00000376236 | WAC | chr10 | 28872436 | + | APBB1IP | chr10 | 26855885 | + | 0.035680585 | 0.9643194 |
ENST00000375646 | ENST00000376236 | WAC | chr10 | 28872436 | + | APBB1IP | chr10 | 26855885 | + | 0.035099924 | 0.9649001 |
ENST00000347934 | ENST00000376236 | WAC | chr10 | 28872436 | + | APBB1IP | chr10 | 26855885 | + | 0.02765522 | 0.97234476 |
ENST00000354911 | ENST00000376236 | WAC | chr10 | 28872436 | + | APBB1IP | chr10 | 26855885 | + | 0.026214724 | 0.9737853 |
ENST00000428935 | ENST00000376236 | WAC | chr10 | 28872436 | + | APBB1IP | chr10 | 26855885 | + | 0.02436246 | 0.97563756 |
Top |
Fusion Genomic Features for WAC-APBB1IP |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
WAC | chr10 | 28824686 | + | APBB1IP | chr10 | 26849033 | + | 0.000908696 | 0.99909127 |
WAC | chr10 | 28872434 | + | APBB1IP | chr10 | 26855889 | + | 1.59E-05 | 0.99998415 |
WAC | chr10 | 28824686 | + | APBB1IP | chr10 | 26849033 | + | 0.000908696 | 0.99909127 |
WAC | chr10 | 28872434 | + | APBB1IP | chr10 | 26855889 | + | 1.59E-05 | 0.99998415 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
Top |
Fusion Protein Features for WAC-APBB1IP |
Go to FGviewer for the breakpoints of chr10:28872434-chr10:26855890 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | APBB1IP |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Appears to function in the signal transduction from Ras activation to actin cytoskeletal remodeling. Suppresses insulin-induced promoter activities through AP1 and SRE. Mediates Rap1-induced adhesion. {ECO:0000269|PubMed:14530287, ECO:0000269|PubMed:15469846}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | APBB1IP | chr10:28872434 | chr10:26855890 | ENST00000376236 | 13 | 15 | 503_640 | 491.0 | 667.0 | Compositional bias | Note=Pro-rich | |
Tgene | APBB1IP | chr10:28872436 | chr10:26855885 | ENST00000376236 | 13 | 15 | 503_640 | 491.0 | 667.0 | Compositional bias | Note=Pro-rich |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | WAC | chr10:28872434 | chr10:26855890 | ENST00000347934 | + | 4 | 13 | 618_644 | 127.0 | 545.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | WAC | chr10:28872434 | chr10:26855890 | ENST00000354911 | + | 4 | 14 | 618_644 | 127.0 | 648.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | WAC | chr10:28872434 | chr10:26855890 | ENST00000375664 | + | 4 | 14 | 618_644 | 82.0 | 603.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | WAC | chr10:28872434 | chr10:26855890 | ENST00000428935 | + | 4 | 10 | 618_644 | 82.0 | 437.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | WAC | chr10:28872436 | chr10:26855885 | ENST00000347934 | + | 4 | 13 | 618_644 | 127.0 | 545.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | WAC | chr10:28872436 | chr10:26855885 | ENST00000354911 | + | 4 | 14 | 618_644 | 127.0 | 648.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | WAC | chr10:28872436 | chr10:26855885 | ENST00000375664 | + | 4 | 14 | 618_644 | 82.0 | 603.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | WAC | chr10:28872436 | chr10:26855885 | ENST00000428935 | + | 4 | 10 | 618_644 | 82.0 | 437.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | WAC | chr10:28872434 | chr10:26855890 | ENST00000347934 | + | 4 | 13 | 129_162 | 127.0 | 545.0 | Domain | WW |
Hgene | WAC | chr10:28872434 | chr10:26855890 | ENST00000354911 | + | 4 | 14 | 129_162 | 127.0 | 648.0 | Domain | WW |
Hgene | WAC | chr10:28872434 | chr10:26855890 | ENST00000375664 | + | 4 | 14 | 129_162 | 82.0 | 603.0 | Domain | WW |
Hgene | WAC | chr10:28872434 | chr10:26855890 | ENST00000428935 | + | 4 | 10 | 129_162 | 82.0 | 437.0 | Domain | WW |
Hgene | WAC | chr10:28872436 | chr10:26855885 | ENST00000347934 | + | 4 | 13 | 129_162 | 127.0 | 545.0 | Domain | WW |
Hgene | WAC | chr10:28872436 | chr10:26855885 | ENST00000354911 | + | 4 | 14 | 129_162 | 127.0 | 648.0 | Domain | WW |
Hgene | WAC | chr10:28872436 | chr10:26855885 | ENST00000375664 | + | 4 | 14 | 129_162 | 82.0 | 603.0 | Domain | WW |
Hgene | WAC | chr10:28872436 | chr10:26855885 | ENST00000428935 | + | 4 | 10 | 129_162 | 82.0 | 437.0 | Domain | WW |
Tgene | APBB1IP | chr10:28872434 | chr10:26855890 | ENST00000376236 | 13 | 15 | 129_148 | 491.0 | 667.0 | Compositional bias | Note=Pro-rich | |
Tgene | APBB1IP | chr10:28872434 | chr10:26855890 | ENST00000376236 | 13 | 15 | 152_155 | 491.0 | 667.0 | Compositional bias | Note=Poly-Glu | |
Tgene | APBB1IP | chr10:28872436 | chr10:26855885 | ENST00000376236 | 13 | 15 | 129_148 | 491.0 | 667.0 | Compositional bias | Note=Pro-rich | |
Tgene | APBB1IP | chr10:28872436 | chr10:26855885 | ENST00000376236 | 13 | 15 | 152_155 | 491.0 | 667.0 | Compositional bias | Note=Poly-Glu | |
Tgene | APBB1IP | chr10:28872434 | chr10:26855890 | ENST00000376236 | 13 | 15 | 176_263 | 491.0 | 667.0 | Domain | Ras-associating | |
Tgene | APBB1IP | chr10:28872434 | chr10:26855890 | ENST00000376236 | 13 | 15 | 310_419 | 491.0 | 667.0 | Domain | PH | |
Tgene | APBB1IP | chr10:28872436 | chr10:26855885 | ENST00000376236 | 13 | 15 | 176_263 | 491.0 | 667.0 | Domain | Ras-associating | |
Tgene | APBB1IP | chr10:28872436 | chr10:26855885 | ENST00000376236 | 13 | 15 | 310_419 | 491.0 | 667.0 | Domain | PH |
Top |
Fusion Gene Sequence for WAC-APBB1IP |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000375664_ENST00000376236_TCGA-E9-A1NA-01A_WAC_chr10_28872434_+_APBB1IP_chr10_26855890_length(transcript)=1698nt_BP=855nt GGTGGCGCGCGGCGTCCGGTGAGGGGCAGCGGCCCGGGCTCGGTTCCGGCTTCCAGCAGCGGCCCGAAGGCGCCGGAGCACGCTCCCCGC TCCCCAGAACGCAGCTTCCGCGGCTGCAGCCCAGGCAGCTCTTCGGGAAGCGTCCGCCCGTGGTCTCGCCAGGGGGTTTCCGACCTCCCC GCCCGACAGCGCAGGGGCGGGGGCCGCGGCCGGAGAGCTCGCCCGAGAGCACCCCCTCCCGCTGCGCCTCTGGGCGCACGCGCAGCCGCT GCAGCCTCCCTTATTTAGTCCGCGATGGCTTCCCTCGCGCCCCACCGTCCTCTTCCGGAAGGCGGCTCCCTCCCTGCGCAGCCCGGAGCC CCTGAGATCAGCCTCGAGCAGGCGCCCGAGCGAGACTATCCCTAAACGGGAACGGCGGTGGCCGACTCGCGAGTGAGGAAAAGAAGGAAA GGGCAGACTGGTCGCGAAGAGAAGATCCAGGCCTCAGAGGAGGAGAAAGGCCGGAGCCAGCCGAGCTGTCACGACCGGAGGGGGGACTCG CAGCCTTACCAGGCACTTAAGTATTCATCGAAGAGTCACCCCAGTAGCGGTGATCACAGACATGAAAAGATGCGAGACGCCGGAGATCCT TCACCACCAAATAAAATGTTGCGGAGATCTGATAGTCCTGAAAACAAATACAGTGACAGCACAGGTCACAGTAAGGCCAAAAATGTGCAT ACTCACAGAGTTAGAGAGAGGGATGGTGGGACCAGTTACTCTCCACAAGAAAATTCACACAACCACAGTGCTCTTCATAGTTCAAATTCA CATTCTTCTAATCCAAGCAATAACCCAAGCAAAACTTCAGATGCAGATAAGAAGCCAGCCCTCGGGAACCACCACGACCCGGCAGTGCCC CGGGCCCCGCACGCCCCCAAGTCCAGCCTGCCCCCGCCCCCTCCGGTGCGGAGGTCCTCCGACACCAGCGGCAGTCCCGCCACGCCCCTC AAGGCCAAGGGCACAGGCGGCGGGGGCTTGCCCGCCCCACCCGACGACTTCCTGCCGCCGCCGCCACCGCCGCCGCCCCTCGATGACCCT GAGCTCCCGCCGCCGCCCCCGGACTTCATGGAGCCGCCCCCAGACTTCGTGCCCCCGCCCCCGCCGTCGTACGCAGGGATCGCGGGCTCA GAGCTGCCCCCGCCGCCGCCGCCGCCGCCCGCGCCCGCGCCCGCCCCCGTCCCCGACTCCGCCAGGCCGCCCCCCGCGGTGGCCAAGAGG CCTCCTGTGCCCCCCAAGAGGCAAGAGAACCCAGGGCACCCCGGCGGAGCAGGAGGCGGGGAGCAAGATTTCATGTCAGACCTCATGAAA GCTTTGCAAAAGAAGAGAGGCAACGTGTCCTAGGGACGGGCATGATGAGTGTTCCAGAGGGAGAAGCATCGCTGACCCCGAGCGCAGGTT TTGCTAGCAGATTGCCCTGACATCTTGTTCATTTCAGATAAAATGTGATGGGAAACTTCTCACTGATGTGCTCAAGTACAGGCATAACCA TTAACCCAGTAGAGTTCAGAATATCTGCCCAAATGTACATATCGTTCCCATGTATTTTAACCTAAATGGAATGTATCTTCCCTTCCAAGC >In-frame_ENST00000375664_ENST00000376236_TCGA-E9-A1NA-01A_WAC_chr10_28872434_+_APBB1IP_chr10_26855890_length(amino acids)=296AA_start in transcript=457_stop in transcript=1347 MVAKRRSRPQRRRKAGASRAVTTGGGTRSLTRHLSIHRRVTPVAVITDMKRCETPEILHHQIKCCGDLIVLKTNTVTAQVTVRPKMCILT ELERGMVGPVTLHKKIHTTTVLFIVQIHILLIQAITQAKLQMQIRSQPSGTTTTRQCPGPRTPPSPACPRPLRCGGPPTPAAVPPRPSRP RAQAAGACPPHPTTSCRRRHRRRPSMTLSSRRRPRTSWSRPQTSCPRPRRRTQGSRAQSCPRRRRRRPRPRPPPSPTPPGRPPRWPRGLL -------------------------------------------------------------- >In-frame_ENST00000375646_ENST00000376236_TCGA-E9-A1NA-01A_WAC_chr10_28872434_+_APBB1IP_chr10_26855890_length(transcript)=1407nt_BP=564nt GCGATGGCTTCCCTCGCGCCCCACCGTCCTCTTCCGGAAGGCGGCTCCCTCCCTGCGCAGCCCGGAGCCCCTGAGATCAGCCTCGAGCAG GCGCCCGAGCGAGACTATCCCTAAACGGGAACGGCGGTGGCCGACTCGCGAGTGAGGAAAAGAAGGAAAGGGCAGACTGGTCGCGAAGAG AAGATCCAGGCCTCAGAGGAGGAGAAAGGCCGGAGCCAGCCGAGCTGTCACGACCGGAGGGGGGACTCGCAGCCTTACCAGGCACTTAAG TATTCATCGAAGAGTCACCCCAGTAGCGGTGATCACAGACATGAAAAGATGCGAGACGCCGGAGATCCTTCACCACCAAATAAAATGTTG CGGAGATCTGATAGTCCTGAAAACAAATACAGTGACAGCACAGGTCACAGTAAGGCCAAAAATGTGCATACTCACAGAGTTAGAGAGAGG GATGGTGGGACCAGTTACTCTCCACAAGAAAATTCACACAACCACAGTGCTCTTCATAGTTCAAATTCACATTCTTCTAATCCAAGCAAT AACCCAAGCAAAACTTCAGATGCAGATAAGAAGCCAGCCCTCGGGAACCACCACGACCCGGCAGTGCCCCGGGCCCCGCACGCCCCCAAG TCCAGCCTGCCCCCGCCCCCTCCGGTGCGGAGGTCCTCCGACACCAGCGGCAGTCCCGCCACGCCCCTCAAGGCCAAGGGCACAGGCGGC GGGGGCTTGCCCGCCCCACCCGACGACTTCCTGCCGCCGCCGCCACCGCCGCCGCCCCTCGATGACCCTGAGCTCCCGCCGCCGCCCCCG GACTTCATGGAGCCGCCCCCAGACTTCGTGCCCCCGCCCCCGCCGTCGTACGCAGGGATCGCGGGCTCAGAGCTGCCCCCGCCGCCGCCG CCGCCGCCCGCGCCCGCGCCCGCCCCCGTCCCCGACTCCGCCAGGCCGCCCCCCGCGGTGGCCAAGAGGCCTCCTGTGCCCCCCAAGAGG CAAGAGAACCCAGGGCACCCCGGCGGAGCAGGAGGCGGGGAGCAAGATTTCATGTCAGACCTCATGAAAGCTTTGCAAAAGAAGAGAGGC AACGTGTCCTAGGGACGGGCATGATGAGTGTTCCAGAGGGAGAAGCATCGCTGACCCCGAGCGCAGGTTTTGCTAGCAGATTGCCCTGAC ATCTTGTTCATTTCAGATAAAATGTGATGGGAAACTTCTCACTGATGTGCTCAAGTACAGGCATAACCATTAACCCAGTAGAGTTCAGAA TATCTGCCCAAATGTACATATCGTTCCCATGTATTTTAACCTAAATGGAATGTATCTTCCCTTCCAAGCTGCCTAAAGCGCTGTTTTAGG >In-frame_ENST00000375646_ENST00000376236_TCGA-E9-A1NA-01A_WAC_chr10_28872434_+_APBB1IP_chr10_26855890_length(amino acids)=296AA_start in transcript=166_stop in transcript=1056 MVAKRRSRPQRRRKAGASRAVTTGGGTRSLTRHLSIHRRVTPVAVITDMKRCETPEILHHQIKCCGDLIVLKTNTVTAQVTVRPKMCILT ELERGMVGPVTLHKKIHTTTVLFIVQIHILLIQAITQAKLQMQIRSQPSGTTTTRQCPGPRTPPSPACPRPLRCGGPPTPAAVPPRPSRP RAQAAGACPPHPTTSCRRRHRRRPSMTLSSRRRPRTSWSRPQTSCPRPRRRTQGSRAQSCPRRRRRRPRPRPPPSPTPPGRPPRWPRGLL -------------------------------------------------------------- >In-frame_ENST00000347934_ENST00000376236_TCGA-E9-A1NA-01A_WAC_chr10_28872434_+_APBB1IP_chr10_26855890_length(transcript)=1491nt_BP=648nt CGTCGTCTTGCCCCCCTCCCCCCGGTTCGCGGTGCCGCCGTGTAGTTGGCGCCGCTGCCCCGGCTGAGAGTGAGCGTGGTGTCGACGGAG GGAGATGGCCCGGGAGCGCCGGCGCCAGTAACTGGGAGCTGATGAGAGTCGCCGAGGGCGCGCCGGGCCCAGGTGCCGGGGCTGCCCGCC GCCCGCCGCCGCCGCCGCCTGCGCGCCCGCCCGCCTTTCGCGGCCGCTCTCCCCCCTCCCCGACACACACTCACAGGCCGGGCATTGATG GTAATGTATGCGAGGAAACAGCAGAGACTCAGTGATGGCTGTCACGACCGGAGGGGGGACTCGCAGCCTTACCAGGCACTTAAGTATTCA TCGAAGAGTCACCCCAGTAGCGGTGATCACAGACATGAAAAGATGCGAGACGCCGGAGATCCTTCACCACCAAATAAAATGTTGCGGAGA TCTGATAGTCCTGAAAACAAATACAGTGACAGCACAGGTCACAGTAAGGCCAAAAATGTGCATACTCACAGAGTTAGAGAGAGGGATGGT GGGACCAGTTACTCTCCACAAGAAAATTCACACAACCACAGTGCTCTTCATAGTTCAAATTCACATTCTTCTAATCCAAGCAATAACCCA AGCAAAACTTCAGATGCAGATAAGAAGCCAGCCCTCGGGAACCACCACGACCCGGCAGTGCCCCGGGCCCCGCACGCCCCCAAGTCCAGC CTGCCCCCGCCCCCTCCGGTGCGGAGGTCCTCCGACACCAGCGGCAGTCCCGCCACGCCCCTCAAGGCCAAGGGCACAGGCGGCGGGGGC TTGCCCGCCCCACCCGACGACTTCCTGCCGCCGCCGCCACCGCCGCCGCCCCTCGATGACCCTGAGCTCCCGCCGCCGCCCCCGGACTTC ATGGAGCCGCCCCCAGACTTCGTGCCCCCGCCCCCGCCGTCGTACGCAGGGATCGCGGGCTCAGAGCTGCCCCCGCCGCCGCCGCCGCCG CCCGCGCCCGCGCCCGCCCCCGTCCCCGACTCCGCCAGGCCGCCCCCCGCGGTGGCCAAGAGGCCTCCTGTGCCCCCCAAGAGGCAAGAG AACCCAGGGCACCCCGGCGGAGCAGGAGGCGGGGAGCAAGATTTCATGTCAGACCTCATGAAAGCTTTGCAAAAGAAGAGAGGCAACGTG TCCTAGGGACGGGCATGATGAGTGTTCCAGAGGGAGAAGCATCGCTGACCCCGAGCGCAGGTTTTGCTAGCAGATTGCCCTGACATCTTG TTCATTTCAGATAAAATGTGATGGGAAACTTCTCACTGATGTGCTCAAGTACAGGCATAACCATTAACCCAGTAGAGTTCAGAATATCTG CCCAAATGTACATATCGTTCCCATGTATTTTAACCTAAATGGAATGTATCTTCCCTTCCAAGCTGCCTAAAGCGCTGTTTTAGGTTCATT >In-frame_ENST00000347934_ENST00000376236_TCGA-E9-A1NA-01A_WAC_chr10_28872434_+_APBB1IP_chr10_26855890_length(amino acids)=334AA_start in transcript=171_stop in transcript=1175 MPAARRRRRLRARPPFAAALPPPRHTLTGRALMVMYARKQQRLSDGCHDRRGDSQPYQALKYSSKSHPSSGDHRHEKMRDAGDPSPPNKM LRRSDSPENKYSDSTGHSKAKNVHTHRVRERDGGTSYSPQENSHNHSALHSSNSHSSNPSNNPSKTSDADKKPALGNHHDPAVPRAPHAP KSSLPPPPPVRRSSDTSGSPATPLKAKGTGGGGLPAPPDDFLPPPPPPPPLDDPELPPPPPDFMEPPPDFVPPPPPSYAGIAGSELPPPP -------------------------------------------------------------- >In-frame_ENST00000354911_ENST00000376236_TCGA-E9-A1NA-01A_WAC_chr10_28872434_+_APBB1IP_chr10_26855890_length(transcript)=1385nt_BP=542nt CGCCGGCGCCAGTAACTGGGAGCTGATGAGAGTCGCCGAGGGCGCGCCGGGCCCAGGTGCCGGGGCTGCCCGCCGCCCGCCGCCGCCGCC GCCTGCGCGCCCGCCCGCCTTTCGCGGCCGCTCTCCCCCCTCCCCGACACACACTCACAGGCCGGGCATTGATGGTAATGTATGCGAGGA AACAGCAGAGACTCAGTGATGGCTGTCACGACCGGAGGGGGGACTCGCAGCCTTACCAGGCACTTAAGTATTCATCGAAGAGTCACCCCA GTAGCGGTGATCACAGACATGAAAAGATGCGAGACGCCGGAGATCCTTCACCACCAAATAAAATGTTGCGGAGATCTGATAGTCCTGAAA ACAAATACAGTGACAGCACAGGTCACAGTAAGGCCAAAAATGTGCATACTCACAGAGTTAGAGAGAGGGATGGTGGGACCAGTTACTCTC CACAAGAAAATTCACACAACCACAGTGCTCTTCATAGTTCAAATTCACATTCTTCTAATCCAAGCAATAACCCAAGCAAAACTTCAGATG CAGATAAGAAGCCAGCCCTCGGGAACCACCACGACCCGGCAGTGCCCCGGGCCCCGCACGCCCCCAAGTCCAGCCTGCCCCCGCCCCCTC CGGTGCGGAGGTCCTCCGACACCAGCGGCAGTCCCGCCACGCCCCTCAAGGCCAAGGGCACAGGCGGCGGGGGCTTGCCCGCCCCACCCG ACGACTTCCTGCCGCCGCCGCCACCGCCGCCGCCCCTCGATGACCCTGAGCTCCCGCCGCCGCCCCCGGACTTCATGGAGCCGCCCCCAG ACTTCGTGCCCCCGCCCCCGCCGTCGTACGCAGGGATCGCGGGCTCAGAGCTGCCCCCGCCGCCGCCGCCGCCGCCCGCGCCCGCGCCCG CCCCCGTCCCCGACTCCGCCAGGCCGCCCCCCGCGGTGGCCAAGAGGCCTCCTGTGCCCCCCAAGAGGCAAGAGAACCCAGGGCACCCCG GCGGAGCAGGAGGCGGGGAGCAAGATTTCATGTCAGACCTCATGAAAGCTTTGCAAAAGAAGAGAGGCAACGTGTCCTAGGGACGGGCAT GATGAGTGTTCCAGAGGGAGAAGCATCGCTGACCCCGAGCGCAGGTTTTGCTAGCAGATTGCCCTGACATCTTGTTCATTTCAGATAAAA TGTGATGGGAAACTTCTCACTGATGTGCTCAAGTACAGGCATAACCATTAACCCAGTAGAGTTCAGAATATCTGCCCAAATGTACATATC GTTCCCATGTATTTTAACCTAAATGGAATGTATCTTCCCTTCCAAGCTGCCTAAAGCGCTGTTTTAGGTTCATTTATTTTATTATGTTCA >In-frame_ENST00000354911_ENST00000376236_TCGA-E9-A1NA-01A_WAC_chr10_28872434_+_APBB1IP_chr10_26855890_length(amino acids)=334AA_start in transcript=65_stop in transcript=1069 MPAARRRRRLRARPPFAAALPPPRHTLTGRALMVMYARKQQRLSDGCHDRRGDSQPYQALKYSSKSHPSSGDHRHEKMRDAGDPSPPNKM LRRSDSPENKYSDSTGHSKAKNVHTHRVRERDGGTSYSPQENSHNHSALHSSNSHSSNPSNNPSKTSDADKKPALGNHHDPAVPRAPHAP KSSLPPPPPVRRSSDTSGSPATPLKAKGTGGGGLPAPPDDFLPPPPPPPPLDDPELPPPPPDFMEPPPDFVPPPPPSYAGIAGSELPPPP -------------------------------------------------------------- >In-frame_ENST00000428935_ENST00000376236_TCGA-E9-A1NA-01A_WAC_chr10_28872434_+_APBB1IP_chr10_26855890_length(transcript)=1309nt_BP=466nt CCGCCGCCGCCGCCGCCTGCGCGCCCGCCCGCCTTTCGCGGCCGCTCTCCCCCCTCCCCGACACACACTCACAGGCCGGGCATTGATGGT AATGTATGCGAGGAAACAGCAGAGACTCAGTGATGGCTGTCACGACCGGAGGGGGGACTCGCAGCCTTACCAGGCACTTAAGTATTCATC GAAGAGTCACCCCAGTAGCGGTGATCACAGACATGAAAAGATGCGAGACGCCGGAGATCCTTCACCACCAAATAAAATGTTGCGGAGATC TGATAGTCCTGAAAACAAATACAGTGACAGCACAGGTCACAGTAAGGCCAAAAATGTGCATACTCACAGAGTTAGAGAGAGGGATGGTGG GACCAGTTACTCTCCACAAGAAAATTCACACAACCACAGTGCTCTTCATAGTTCAAATTCACATTCTTCTAATCCAAGCAATAACCCAAG CAAAACTTCAGATGCAGATAAGAAGCCAGCCCTCGGGAACCACCACGACCCGGCAGTGCCCCGGGCCCCGCACGCCCCCAAGTCCAGCCT GCCCCCGCCCCCTCCGGTGCGGAGGTCCTCCGACACCAGCGGCAGTCCCGCCACGCCCCTCAAGGCCAAGGGCACAGGCGGCGGGGGCTT GCCCGCCCCACCCGACGACTTCCTGCCGCCGCCGCCACCGCCGCCGCCCCTCGATGACCCTGAGCTCCCGCCGCCGCCCCCGGACTTCAT GGAGCCGCCCCCAGACTTCGTGCCCCCGCCCCCGCCGTCGTACGCAGGGATCGCGGGCTCAGAGCTGCCCCCGCCGCCGCCGCCGCCGCC CGCGCCCGCGCCCGCCCCCGTCCCCGACTCCGCCAGGCCGCCCCCCGCGGTGGCCAAGAGGCCTCCTGTGCCCCCCAAGAGGCAAGAGAA CCCAGGGCACCCCGGCGGAGCAGGAGGCGGGGAGCAAGATTTCATGTCAGACCTCATGAAAGCTTTGCAAAAGAAGAGAGGCAACGTGTC CTAGGGACGGGCATGATGAGTGTTCCAGAGGGAGAAGCATCGCTGACCCCGAGCGCAGGTTTTGCTAGCAGATTGCCCTGACATCTTGTT CATTTCAGATAAAATGTGATGGGAAACTTCTCACTGATGTGCTCAAGTACAGGCATAACCATTAACCCAGTAGAGTTCAGAATATCTGCC CAAATGTACATATCGTTCCCATGTATTTTAACCTAAATGGAATGTATCTTCCCTTCCAAGCTGCCTAAAGCGCTGTTTTAGGTTCATTTA >In-frame_ENST00000428935_ENST00000376236_TCGA-E9-A1NA-01A_WAC_chr10_28872434_+_APBB1IP_chr10_26855890_length(amino acids)=325AA_start in transcript=16_stop in transcript=993 MRARPPFAAALPPPRHTLTGRALMVMYARKQQRLSDGCHDRRGDSQPYQALKYSSKSHPSSGDHRHEKMRDAGDPSPPNKMLRRSDSPEN KYSDSTGHSKAKNVHTHRVRERDGGTSYSPQENSHNHSALHSSNSHSSNPSNNPSKTSDADKKPALGNHHDPAVPRAPHAPKSSLPPPPP VRRSSDTSGSPATPLKAKGTGGGGLPAPPDDFLPPPPPPPPLDDPELPPPPPDFMEPPPDFVPPPPPSYAGIAGSELPPPPPPPPAPAPA -------------------------------------------------------------- >In-frame_ENST00000375664_ENST00000376236_TCGA-E9-A1NA-01A_WAC_chr10_28872436_+_APBB1IP_chr10_26855885_length(transcript)=1698nt_BP=855nt GGTGGCGCGCGGCGTCCGGTGAGGGGCAGCGGCCCGGGCTCGGTTCCGGCTTCCAGCAGCGGCCCGAAGGCGCCGGAGCACGCTCCCCGC TCCCCAGAACGCAGCTTCCGCGGCTGCAGCCCAGGCAGCTCTTCGGGAAGCGTCCGCCCGTGGTCTCGCCAGGGGGTTTCCGACCTCCCC GCCCGACAGCGCAGGGGCGGGGGCCGCGGCCGGAGAGCTCGCCCGAGAGCACCCCCTCCCGCTGCGCCTCTGGGCGCACGCGCAGCCGCT GCAGCCTCCCTTATTTAGTCCGCGATGGCTTCCCTCGCGCCCCACCGTCCTCTTCCGGAAGGCGGCTCCCTCCCTGCGCAGCCCGGAGCC CCTGAGATCAGCCTCGAGCAGGCGCCCGAGCGAGACTATCCCTAAACGGGAACGGCGGTGGCCGACTCGCGAGTGAGGAAAAGAAGGAAA GGGCAGACTGGTCGCGAAGAGAAGATCCAGGCCTCAGAGGAGGAGAAAGGCCGGAGCCAGCCGAGCTGTCACGACCGGAGGGGGGACTCG CAGCCTTACCAGGCACTTAAGTATTCATCGAAGAGTCACCCCAGTAGCGGTGATCACAGACATGAAAAGATGCGAGACGCCGGAGATCCT TCACCACCAAATAAAATGTTGCGGAGATCTGATAGTCCTGAAAACAAATACAGTGACAGCACAGGTCACAGTAAGGCCAAAAATGTGCAT ACTCACAGAGTTAGAGAGAGGGATGGTGGGACCAGTTACTCTCCACAAGAAAATTCACACAACCACAGTGCTCTTCATAGTTCAAATTCA CATTCTTCTAATCCAAGCAATAACCCAAGCAAAACTTCAGATGCAGATAAGAAGCCAGCCCTCGGGAACCACCACGACCCGGCAGTGCCC CGGGCCCCGCACGCCCCCAAGTCCAGCCTGCCCCCGCCCCCTCCGGTGCGGAGGTCCTCCGACACCAGCGGCAGTCCCGCCACGCCCCTC AAGGCCAAGGGCACAGGCGGCGGGGGCTTGCCCGCCCCACCCGACGACTTCCTGCCGCCGCCGCCACCGCCGCCGCCCCTCGATGACCCT GAGCTCCCGCCGCCGCCCCCGGACTTCATGGAGCCGCCCCCAGACTTCGTGCCCCCGCCCCCGCCGTCGTACGCAGGGATCGCGGGCTCA GAGCTGCCCCCGCCGCCGCCGCCGCCGCCCGCGCCCGCGCCCGCCCCCGTCCCCGACTCCGCCAGGCCGCCCCCCGCGGTGGCCAAGAGG CCTCCTGTGCCCCCCAAGAGGCAAGAGAACCCAGGGCACCCCGGCGGAGCAGGAGGCGGGGAGCAAGATTTCATGTCAGACCTCATGAAA GCTTTGCAAAAGAAGAGAGGCAACGTGTCCTAGGGACGGGCATGATGAGTGTTCCAGAGGGAGAAGCATCGCTGACCCCGAGCGCAGGTT TTGCTAGCAGATTGCCCTGACATCTTGTTCATTTCAGATAAAATGTGATGGGAAACTTCTCACTGATGTGCTCAAGTACAGGCATAACCA TTAACCCAGTAGAGTTCAGAATATCTGCCCAAATGTACATATCGTTCCCATGTATTTTAACCTAAATGGAATGTATCTTCCCTTCCAAGC >In-frame_ENST00000375664_ENST00000376236_TCGA-E9-A1NA-01A_WAC_chr10_28872436_+_APBB1IP_chr10_26855885_length(amino acids)=296AA_start in transcript=457_stop in transcript=1347 MVAKRRSRPQRRRKAGASRAVTTGGGTRSLTRHLSIHRRVTPVAVITDMKRCETPEILHHQIKCCGDLIVLKTNTVTAQVTVRPKMCILT ELERGMVGPVTLHKKIHTTTVLFIVQIHILLIQAITQAKLQMQIRSQPSGTTTTRQCPGPRTPPSPACPRPLRCGGPPTPAAVPPRPSRP RAQAAGACPPHPTTSCRRRHRRRPSMTLSSRRRPRTSWSRPQTSCPRPRRRTQGSRAQSCPRRRRRRPRPRPPPSPTPPGRPPRWPRGLL -------------------------------------------------------------- >In-frame_ENST00000375646_ENST00000376236_TCGA-E9-A1NA-01A_WAC_chr10_28872436_+_APBB1IP_chr10_26855885_length(transcript)=1407nt_BP=564nt GCGATGGCTTCCCTCGCGCCCCACCGTCCTCTTCCGGAAGGCGGCTCCCTCCCTGCGCAGCCCGGAGCCCCTGAGATCAGCCTCGAGCAG GCGCCCGAGCGAGACTATCCCTAAACGGGAACGGCGGTGGCCGACTCGCGAGTGAGGAAAAGAAGGAAAGGGCAGACTGGTCGCGAAGAG AAGATCCAGGCCTCAGAGGAGGAGAAAGGCCGGAGCCAGCCGAGCTGTCACGACCGGAGGGGGGACTCGCAGCCTTACCAGGCACTTAAG TATTCATCGAAGAGTCACCCCAGTAGCGGTGATCACAGACATGAAAAGATGCGAGACGCCGGAGATCCTTCACCACCAAATAAAATGTTG CGGAGATCTGATAGTCCTGAAAACAAATACAGTGACAGCACAGGTCACAGTAAGGCCAAAAATGTGCATACTCACAGAGTTAGAGAGAGG GATGGTGGGACCAGTTACTCTCCACAAGAAAATTCACACAACCACAGTGCTCTTCATAGTTCAAATTCACATTCTTCTAATCCAAGCAAT AACCCAAGCAAAACTTCAGATGCAGATAAGAAGCCAGCCCTCGGGAACCACCACGACCCGGCAGTGCCCCGGGCCCCGCACGCCCCCAAG TCCAGCCTGCCCCCGCCCCCTCCGGTGCGGAGGTCCTCCGACACCAGCGGCAGTCCCGCCACGCCCCTCAAGGCCAAGGGCACAGGCGGC GGGGGCTTGCCCGCCCCACCCGACGACTTCCTGCCGCCGCCGCCACCGCCGCCGCCCCTCGATGACCCTGAGCTCCCGCCGCCGCCCCCG GACTTCATGGAGCCGCCCCCAGACTTCGTGCCCCCGCCCCCGCCGTCGTACGCAGGGATCGCGGGCTCAGAGCTGCCCCCGCCGCCGCCG CCGCCGCCCGCGCCCGCGCCCGCCCCCGTCCCCGACTCCGCCAGGCCGCCCCCCGCGGTGGCCAAGAGGCCTCCTGTGCCCCCCAAGAGG CAAGAGAACCCAGGGCACCCCGGCGGAGCAGGAGGCGGGGAGCAAGATTTCATGTCAGACCTCATGAAAGCTTTGCAAAAGAAGAGAGGC AACGTGTCCTAGGGACGGGCATGATGAGTGTTCCAGAGGGAGAAGCATCGCTGACCCCGAGCGCAGGTTTTGCTAGCAGATTGCCCTGAC ATCTTGTTCATTTCAGATAAAATGTGATGGGAAACTTCTCACTGATGTGCTCAAGTACAGGCATAACCATTAACCCAGTAGAGTTCAGAA TATCTGCCCAAATGTACATATCGTTCCCATGTATTTTAACCTAAATGGAATGTATCTTCCCTTCCAAGCTGCCTAAAGCGCTGTTTTAGG >In-frame_ENST00000375646_ENST00000376236_TCGA-E9-A1NA-01A_WAC_chr10_28872436_+_APBB1IP_chr10_26855885_length(amino acids)=296AA_start in transcript=166_stop in transcript=1056 MVAKRRSRPQRRRKAGASRAVTTGGGTRSLTRHLSIHRRVTPVAVITDMKRCETPEILHHQIKCCGDLIVLKTNTVTAQVTVRPKMCILT ELERGMVGPVTLHKKIHTTTVLFIVQIHILLIQAITQAKLQMQIRSQPSGTTTTRQCPGPRTPPSPACPRPLRCGGPPTPAAVPPRPSRP RAQAAGACPPHPTTSCRRRHRRRPSMTLSSRRRPRTSWSRPQTSCPRPRRRTQGSRAQSCPRRRRRRPRPRPPPSPTPPGRPPRWPRGLL -------------------------------------------------------------- >In-frame_ENST00000347934_ENST00000376236_TCGA-E9-A1NA-01A_WAC_chr10_28872436_+_APBB1IP_chr10_26855885_length(transcript)=1491nt_BP=648nt CGTCGTCTTGCCCCCCTCCCCCCGGTTCGCGGTGCCGCCGTGTAGTTGGCGCCGCTGCCCCGGCTGAGAGTGAGCGTGGTGTCGACGGAG GGAGATGGCCCGGGAGCGCCGGCGCCAGTAACTGGGAGCTGATGAGAGTCGCCGAGGGCGCGCCGGGCCCAGGTGCCGGGGCTGCCCGCC GCCCGCCGCCGCCGCCGCCTGCGCGCCCGCCCGCCTTTCGCGGCCGCTCTCCCCCCTCCCCGACACACACTCACAGGCCGGGCATTGATG GTAATGTATGCGAGGAAACAGCAGAGACTCAGTGATGGCTGTCACGACCGGAGGGGGGACTCGCAGCCTTACCAGGCACTTAAGTATTCA TCGAAGAGTCACCCCAGTAGCGGTGATCACAGACATGAAAAGATGCGAGACGCCGGAGATCCTTCACCACCAAATAAAATGTTGCGGAGA TCTGATAGTCCTGAAAACAAATACAGTGACAGCACAGGTCACAGTAAGGCCAAAAATGTGCATACTCACAGAGTTAGAGAGAGGGATGGT GGGACCAGTTACTCTCCACAAGAAAATTCACACAACCACAGTGCTCTTCATAGTTCAAATTCACATTCTTCTAATCCAAGCAATAACCCA AGCAAAACTTCAGATGCAGATAAGAAGCCAGCCCTCGGGAACCACCACGACCCGGCAGTGCCCCGGGCCCCGCACGCCCCCAAGTCCAGC CTGCCCCCGCCCCCTCCGGTGCGGAGGTCCTCCGACACCAGCGGCAGTCCCGCCACGCCCCTCAAGGCCAAGGGCACAGGCGGCGGGGGC TTGCCCGCCCCACCCGACGACTTCCTGCCGCCGCCGCCACCGCCGCCGCCCCTCGATGACCCTGAGCTCCCGCCGCCGCCCCCGGACTTC ATGGAGCCGCCCCCAGACTTCGTGCCCCCGCCCCCGCCGTCGTACGCAGGGATCGCGGGCTCAGAGCTGCCCCCGCCGCCGCCGCCGCCG CCCGCGCCCGCGCCCGCCCCCGTCCCCGACTCCGCCAGGCCGCCCCCCGCGGTGGCCAAGAGGCCTCCTGTGCCCCCCAAGAGGCAAGAG AACCCAGGGCACCCCGGCGGAGCAGGAGGCGGGGAGCAAGATTTCATGTCAGACCTCATGAAAGCTTTGCAAAAGAAGAGAGGCAACGTG TCCTAGGGACGGGCATGATGAGTGTTCCAGAGGGAGAAGCATCGCTGACCCCGAGCGCAGGTTTTGCTAGCAGATTGCCCTGACATCTTG TTCATTTCAGATAAAATGTGATGGGAAACTTCTCACTGATGTGCTCAAGTACAGGCATAACCATTAACCCAGTAGAGTTCAGAATATCTG CCCAAATGTACATATCGTTCCCATGTATTTTAACCTAAATGGAATGTATCTTCCCTTCCAAGCTGCCTAAAGCGCTGTTTTAGGTTCATT >In-frame_ENST00000347934_ENST00000376236_TCGA-E9-A1NA-01A_WAC_chr10_28872436_+_APBB1IP_chr10_26855885_length(amino acids)=334AA_start in transcript=171_stop in transcript=1175 MPAARRRRRLRARPPFAAALPPPRHTLTGRALMVMYARKQQRLSDGCHDRRGDSQPYQALKYSSKSHPSSGDHRHEKMRDAGDPSPPNKM LRRSDSPENKYSDSTGHSKAKNVHTHRVRERDGGTSYSPQENSHNHSALHSSNSHSSNPSNNPSKTSDADKKPALGNHHDPAVPRAPHAP KSSLPPPPPVRRSSDTSGSPATPLKAKGTGGGGLPAPPDDFLPPPPPPPPLDDPELPPPPPDFMEPPPDFVPPPPPSYAGIAGSELPPPP -------------------------------------------------------------- >In-frame_ENST00000354911_ENST00000376236_TCGA-E9-A1NA-01A_WAC_chr10_28872436_+_APBB1IP_chr10_26855885_length(transcript)=1385nt_BP=542nt CGCCGGCGCCAGTAACTGGGAGCTGATGAGAGTCGCCGAGGGCGCGCCGGGCCCAGGTGCCGGGGCTGCCCGCCGCCCGCCGCCGCCGCC GCCTGCGCGCCCGCCCGCCTTTCGCGGCCGCTCTCCCCCCTCCCCGACACACACTCACAGGCCGGGCATTGATGGTAATGTATGCGAGGA AACAGCAGAGACTCAGTGATGGCTGTCACGACCGGAGGGGGGACTCGCAGCCTTACCAGGCACTTAAGTATTCATCGAAGAGTCACCCCA GTAGCGGTGATCACAGACATGAAAAGATGCGAGACGCCGGAGATCCTTCACCACCAAATAAAATGTTGCGGAGATCTGATAGTCCTGAAA ACAAATACAGTGACAGCACAGGTCACAGTAAGGCCAAAAATGTGCATACTCACAGAGTTAGAGAGAGGGATGGTGGGACCAGTTACTCTC CACAAGAAAATTCACACAACCACAGTGCTCTTCATAGTTCAAATTCACATTCTTCTAATCCAAGCAATAACCCAAGCAAAACTTCAGATG CAGATAAGAAGCCAGCCCTCGGGAACCACCACGACCCGGCAGTGCCCCGGGCCCCGCACGCCCCCAAGTCCAGCCTGCCCCCGCCCCCTC CGGTGCGGAGGTCCTCCGACACCAGCGGCAGTCCCGCCACGCCCCTCAAGGCCAAGGGCACAGGCGGCGGGGGCTTGCCCGCCCCACCCG ACGACTTCCTGCCGCCGCCGCCACCGCCGCCGCCCCTCGATGACCCTGAGCTCCCGCCGCCGCCCCCGGACTTCATGGAGCCGCCCCCAG ACTTCGTGCCCCCGCCCCCGCCGTCGTACGCAGGGATCGCGGGCTCAGAGCTGCCCCCGCCGCCGCCGCCGCCGCCCGCGCCCGCGCCCG CCCCCGTCCCCGACTCCGCCAGGCCGCCCCCCGCGGTGGCCAAGAGGCCTCCTGTGCCCCCCAAGAGGCAAGAGAACCCAGGGCACCCCG GCGGAGCAGGAGGCGGGGAGCAAGATTTCATGTCAGACCTCATGAAAGCTTTGCAAAAGAAGAGAGGCAACGTGTCCTAGGGACGGGCAT GATGAGTGTTCCAGAGGGAGAAGCATCGCTGACCCCGAGCGCAGGTTTTGCTAGCAGATTGCCCTGACATCTTGTTCATTTCAGATAAAA TGTGATGGGAAACTTCTCACTGATGTGCTCAAGTACAGGCATAACCATTAACCCAGTAGAGTTCAGAATATCTGCCCAAATGTACATATC GTTCCCATGTATTTTAACCTAAATGGAATGTATCTTCCCTTCCAAGCTGCCTAAAGCGCTGTTTTAGGTTCATTTATTTTATTATGTTCA >In-frame_ENST00000354911_ENST00000376236_TCGA-E9-A1NA-01A_WAC_chr10_28872436_+_APBB1IP_chr10_26855885_length(amino acids)=334AA_start in transcript=65_stop in transcript=1069 MPAARRRRRLRARPPFAAALPPPRHTLTGRALMVMYARKQQRLSDGCHDRRGDSQPYQALKYSSKSHPSSGDHRHEKMRDAGDPSPPNKM LRRSDSPENKYSDSTGHSKAKNVHTHRVRERDGGTSYSPQENSHNHSALHSSNSHSSNPSNNPSKTSDADKKPALGNHHDPAVPRAPHAP KSSLPPPPPVRRSSDTSGSPATPLKAKGTGGGGLPAPPDDFLPPPPPPPPLDDPELPPPPPDFMEPPPDFVPPPPPSYAGIAGSELPPPP -------------------------------------------------------------- >In-frame_ENST00000428935_ENST00000376236_TCGA-E9-A1NA-01A_WAC_chr10_28872436_+_APBB1IP_chr10_26855885_length(transcript)=1309nt_BP=466nt CCGCCGCCGCCGCCGCCTGCGCGCCCGCCCGCCTTTCGCGGCCGCTCTCCCCCCTCCCCGACACACACTCACAGGCCGGGCATTGATGGT AATGTATGCGAGGAAACAGCAGAGACTCAGTGATGGCTGTCACGACCGGAGGGGGGACTCGCAGCCTTACCAGGCACTTAAGTATTCATC GAAGAGTCACCCCAGTAGCGGTGATCACAGACATGAAAAGATGCGAGACGCCGGAGATCCTTCACCACCAAATAAAATGTTGCGGAGATC TGATAGTCCTGAAAACAAATACAGTGACAGCACAGGTCACAGTAAGGCCAAAAATGTGCATACTCACAGAGTTAGAGAGAGGGATGGTGG GACCAGTTACTCTCCACAAGAAAATTCACACAACCACAGTGCTCTTCATAGTTCAAATTCACATTCTTCTAATCCAAGCAATAACCCAAG CAAAACTTCAGATGCAGATAAGAAGCCAGCCCTCGGGAACCACCACGACCCGGCAGTGCCCCGGGCCCCGCACGCCCCCAAGTCCAGCCT GCCCCCGCCCCCTCCGGTGCGGAGGTCCTCCGACACCAGCGGCAGTCCCGCCACGCCCCTCAAGGCCAAGGGCACAGGCGGCGGGGGCTT GCCCGCCCCACCCGACGACTTCCTGCCGCCGCCGCCACCGCCGCCGCCCCTCGATGACCCTGAGCTCCCGCCGCCGCCCCCGGACTTCAT GGAGCCGCCCCCAGACTTCGTGCCCCCGCCCCCGCCGTCGTACGCAGGGATCGCGGGCTCAGAGCTGCCCCCGCCGCCGCCGCCGCCGCC CGCGCCCGCGCCCGCCCCCGTCCCCGACTCCGCCAGGCCGCCCCCCGCGGTGGCCAAGAGGCCTCCTGTGCCCCCCAAGAGGCAAGAGAA CCCAGGGCACCCCGGCGGAGCAGGAGGCGGGGAGCAAGATTTCATGTCAGACCTCATGAAAGCTTTGCAAAAGAAGAGAGGCAACGTGTC CTAGGGACGGGCATGATGAGTGTTCCAGAGGGAGAAGCATCGCTGACCCCGAGCGCAGGTTTTGCTAGCAGATTGCCCTGACATCTTGTT CATTTCAGATAAAATGTGATGGGAAACTTCTCACTGATGTGCTCAAGTACAGGCATAACCATTAACCCAGTAGAGTTCAGAATATCTGCC CAAATGTACATATCGTTCCCATGTATTTTAACCTAAATGGAATGTATCTTCCCTTCCAAGCTGCCTAAAGCGCTGTTTTAGGTTCATTTA >In-frame_ENST00000428935_ENST00000376236_TCGA-E9-A1NA-01A_WAC_chr10_28872436_+_APBB1IP_chr10_26855885_length(amino acids)=325AA_start in transcript=16_stop in transcript=993 MRARPPFAAALPPPRHTLTGRALMVMYARKQQRLSDGCHDRRGDSQPYQALKYSSKSHPSSGDHRHEKMRDAGDPSPPNKMLRRSDSPEN KYSDSTGHSKAKNVHTHRVRERDGGTSYSPQENSHNHSALHSSNSHSSNPSNNPSKTSDADKKPALGNHHDPAVPRAPHAPKSSLPPPPP VRRSSDTSGSPATPLKAKGTGGGGLPAPPDDFLPPPPPPPPLDDPELPPPPPDFMEPPPDFVPPPPPSYAGIAGSELPPPPPPPPAPAPA -------------------------------------------------------------- |
Top |
Fusion Gene PPI Analysis for WAC-APBB1IP |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
Related Drugs for WAC-APBB1IP |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
Related Diseases for WAC-APBB1IP |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | WAC | C0033578 | Prostatic Neoplasms | 1 | CTD_human |
Hgene | WAC | C0376358 | Malignant neoplasm of prostate | 1 | CTD_human |
Hgene | WAC | C1535926 | Neurodevelopmental Disorders | 1 | CTD_human |
Hgene | WAC | C3714756 | Intellectual Disability | 1 | GENOMICS_ENGLAND |
Hgene | WAC | C4225239 | DESANTO-SHINAWI SYNDROME | 1 | CTD_human;ORPHANET |
Hgene | WAC | C4225431 | CHROMOSOME 10p12-p11 DELETION SYNDROME | 1 | ORPHANET |
Tgene | APBB1IP | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |