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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:XPO1-USP34 (FusionGDB2 ID:98991) |
Fusion Gene Summary for XPO1-USP34 |
Fusion gene summary |
Fusion gene information | Fusion gene name: XPO1-USP34 | Fusion gene ID: 98991 | Hgene | Tgene | Gene symbol | XPO1 | USP34 | Gene ID | 7514 | 9736 |
Gene name | exportin 1 | ubiquitin specific peptidase 34 | |
Synonyms | CRM-1|CRM1|emb|exp1 | - | |
Cytomap | 2p15 | 2p15 | |
Type of gene | protein-coding | protein-coding | |
Description | exportin-1chromosome region maintenance 1 homologchromosome region maintenance 1 protein homologexportin 1 (CRM1 homolog, yeast)exportin-1 (required for chromosome region maintenance) | ubiquitin carboxyl-terminal hydrolase 34deubiquitinating enzyme 34ubiquitin specific protease 34ubiquitin thioesterase 34ubiquitin thiolesterase 34ubiquitin-specific-processing protease 34 | |
Modification date | 20200327 | 20200313 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000401558, ENST00000404992, ENST00000406957, ENST00000481214, | ENST00000398571, ENST00000472689, | |
Fusion gene scores | * DoF score | 12 X 15 X 9=1620 | 10 X 16 X 4=640 |
# samples | 19 | 15 | |
** MAII score | log2(19/1620*10)=-3.09192248944104 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(15/640*10)=-2.09310940439148 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: XPO1 [Title/Abstract] AND USP34 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | USP34(61597455)-XPO1(61761038), # samples:1 USP34(61632843)-XPO1(61711240), # samples:1 USP34(61697785)-XPO1(61729445), # samples:1 XPO1(61753554)-USP34(61434021), # samples:1 XPO1(61749746)-USP34(61448741), # samples:1 XPO1(61749746)-USP34(61449798), # samples:1 XPO1(61749746)-USP34(61647968), # samples:1 XPO1(61749746)-USP34(61528589), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | XPO1-USP34 seems lost the major protein functional domain in Hgene partner, which is a CGC due to the frame-shifted ORF. XPO1-USP34 seems lost the major protein functional domain in Hgene partner, which is a cell metabolism gene due to the frame-shifted ORF. XPO1-USP34 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. XPO1-USP34 seems lost the major protein functional domain in Hgene partner, which is a IUPHAR drug target due to the frame-shifted ORF. XPO1-USP34 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF. USP34-XPO1 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. USP34-XPO1 seems lost the major protein functional domain in Tgene partner, which is a CGC due to the frame-shifted ORF. USP34-XPO1 seems lost the major protein functional domain in Tgene partner, which is a cell metabolism gene due to the frame-shifted ORF. USP34-XPO1 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF. USP34-XPO1 seems lost the major protein functional domain in Tgene partner, which is a IUPHAR drug target due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | XPO1 | GO:0006611 | protein export from nucleus | 22250199 |
Tgene | USP34 | GO:0016579 | protein deubiquitination | 14715245 |
Tgene | USP34 | GO:0071108 | protein K48-linked deubiquitination | 21383061 |
Tgene | USP34 | GO:0090263 | positive regulation of canonical Wnt signaling pathway | 21383061 |
Fusion gene breakpoints across XPO1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across USP34 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | OV | TCGA-24-1422 | XPO1 | chr2 | 61753554 | - | USP34 | chr2 | 61434021 | - |
ChimerDB4 | BRCA | TCGA-AC-A8OQ-01A | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61448741 | - |
ChimerDB4 | BRCA | TCGA-AC-A8OQ-01A | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61449798 | - |
ChimerDB4 | BRCA | TCGA-AC-A2BK-01A | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61647968 | - |
ChimerDB4 | GBM | TCGA-27-2521-01A | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61528589 | - |
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Fusion Gene ORF analysis for XPO1-USP34 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000401558 | ENST00000398571 | XPO1 | chr2 | 61753554 | - | USP34 | chr2 | 61434021 | - |
5CDS-intron | ENST00000401558 | ENST00000472689 | XPO1 | chr2 | 61753554 | - | USP34 | chr2 | 61434021 | - |
Frame-shift | ENST00000404992 | ENST00000398571 | XPO1 | chr2 | 61753554 | - | USP34 | chr2 | 61434021 | - |
5CDS-intron | ENST00000404992 | ENST00000472689 | XPO1 | chr2 | 61753554 | - | USP34 | chr2 | 61434021 | - |
Frame-shift | ENST00000406957 | ENST00000398571 | XPO1 | chr2 | 61753554 | - | USP34 | chr2 | 61434021 | - |
5CDS-intron | ENST00000406957 | ENST00000472689 | XPO1 | chr2 | 61753554 | - | USP34 | chr2 | 61434021 | - |
intron-3CDS | ENST00000481214 | ENST00000398571 | XPO1 | chr2 | 61753554 | - | USP34 | chr2 | 61434021 | - |
intron-intron | ENST00000481214 | ENST00000472689 | XPO1 | chr2 | 61753554 | - | USP34 | chr2 | 61434021 | - |
In-frame | ENST00000401558 | ENST00000398571 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61448741 | - |
5CDS-5UTR | ENST00000401558 | ENST00000472689 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61448741 | - |
In-frame | ENST00000404992 | ENST00000398571 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61448741 | - |
5CDS-5UTR | ENST00000404992 | ENST00000472689 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61448741 | - |
Frame-shift | ENST00000406957 | ENST00000398571 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61448741 | - |
5CDS-5UTR | ENST00000406957 | ENST00000472689 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61448741 | - |
intron-3CDS | ENST00000481214 | ENST00000398571 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61448741 | - |
intron-5UTR | ENST00000481214 | ENST00000472689 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61448741 | - |
In-frame | ENST00000401558 | ENST00000398571 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61449798 | - |
5CDS-5UTR | ENST00000401558 | ENST00000472689 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61449798 | - |
In-frame | ENST00000404992 | ENST00000398571 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61449798 | - |
5CDS-5UTR | ENST00000404992 | ENST00000472689 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61449798 | - |
Frame-shift | ENST00000406957 | ENST00000398571 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61449798 | - |
5CDS-5UTR | ENST00000406957 | ENST00000472689 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61449798 | - |
intron-3CDS | ENST00000481214 | ENST00000398571 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61449798 | - |
intron-5UTR | ENST00000481214 | ENST00000472689 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61449798 | - |
Frame-shift | ENST00000401558 | ENST00000398571 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61647968 | - |
5CDS-intron | ENST00000401558 | ENST00000472689 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61647968 | - |
Frame-shift | ENST00000404992 | ENST00000398571 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61647968 | - |
5CDS-intron | ENST00000404992 | ENST00000472689 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61647968 | - |
Frame-shift | ENST00000406957 | ENST00000398571 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61647968 | - |
5CDS-intron | ENST00000406957 | ENST00000472689 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61647968 | - |
intron-3CDS | ENST00000481214 | ENST00000398571 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61647968 | - |
intron-intron | ENST00000481214 | ENST00000472689 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61647968 | - |
Frame-shift | ENST00000401558 | ENST00000398571 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61528589 | - |
5CDS-intron | ENST00000401558 | ENST00000472689 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61528589 | - |
Frame-shift | ENST00000404992 | ENST00000398571 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61528589 | - |
5CDS-intron | ENST00000404992 | ENST00000472689 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61528589 | - |
Frame-shift | ENST00000406957 | ENST00000398571 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61528589 | - |
5CDS-intron | ENST00000406957 | ENST00000472689 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61528589 | - |
intron-3CDS | ENST00000481214 | ENST00000398571 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61528589 | - |
intron-intron | ENST00000481214 | ENST00000472689 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61528589 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000401558 | XPO1 | chr2 | 61749746 | - | ENST00000398571 | USP34 | chr2 | 61448741 | - | 4515 | 1029 | 1050 | 3875 | 941 |
ENST00000404992 | XPO1 | chr2 | 61749746 | - | ENST00000398571 | USP34 | chr2 | 61448741 | - | 4194 | 708 | 729 | 3554 | 941 |
ENST00000401558 | XPO1 | chr2 | 61749746 | - | ENST00000398571 | USP34 | chr2 | 61449798 | - | 4560 | 1029 | 1038 | 3920 | 960 |
ENST00000404992 | XPO1 | chr2 | 61749746 | - | ENST00000398571 | USP34 | chr2 | 61449798 | - | 4239 | 708 | 717 | 3599 | 960 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000401558 | ENST00000398571 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61448741 | - | 0.000341326 | 0.9996587 |
ENST00000404992 | ENST00000398571 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61448741 | - | 0.00026571 | 0.9997342 |
ENST00000401558 | ENST00000398571 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61449798 | - | 0.000240325 | 0.99975973 |
ENST00000404992 | ENST00000398571 | XPO1 | chr2 | 61749746 | - | USP34 | chr2 | 61449798 | - | 0.000205386 | 0.99979466 |
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Fusion Genomic Features for XPO1-USP34 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for XPO1-USP34 |
Go to FGviewer for the breakpoints of chr2:61749746-chr2:61448741 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | . |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000401558 | - | 4 | 25 | 46_112 | 100.33333333333333 | 1072.0 | Domain | Importin N-terminal |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000404992 | - | 4 | 25 | 46_112 | 100.33333333333333 | 1072.0 | Domain | Importin N-terminal |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000406957 | - | 5 | 26 | 46_112 | 100.33333333333333 | 1072.0 | Domain | Importin N-terminal |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000401558 | - | 4 | 25 | 46_112 | 100.33333333333333 | 1072.0 | Domain | Importin N-terminal |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000404992 | - | 4 | 25 | 46_112 | 100.33333333333333 | 1072.0 | Domain | Importin N-terminal |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000406957 | - | 5 | 26 | 46_112 | 100.33333333333333 | 1072.0 | Domain | Importin N-terminal |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000401558 | - | 4 | 25 | 1_679 | 100.33333333333333 | 1072.0 | Region | Note=Necessary for HTLV-1 Rex-mediated mRNA export |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000401558 | - | 4 | 25 | 411_414 | 100.33333333333333 | 1072.0 | Region | Note=Necessary for HTLV-1 Rex multimerization |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000404992 | - | 4 | 25 | 1_679 | 100.33333333333333 | 1072.0 | Region | Note=Necessary for HTLV-1 Rex-mediated mRNA export |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000404992 | - | 4 | 25 | 411_414 | 100.33333333333333 | 1072.0 | Region | Note=Necessary for HTLV-1 Rex multimerization |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000406957 | - | 5 | 26 | 1_679 | 100.33333333333333 | 1072.0 | Region | Note=Necessary for HTLV-1 Rex-mediated mRNA export |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000406957 | - | 5 | 26 | 411_414 | 100.33333333333333 | 1072.0 | Region | Note=Necessary for HTLV-1 Rex multimerization |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000401558 | - | 4 | 25 | 1_679 | 100.33333333333333 | 1072.0 | Region | Note=Necessary for HTLV-1 Rex-mediated mRNA export |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000401558 | - | 4 | 25 | 411_414 | 100.33333333333333 | 1072.0 | Region | Note=Necessary for HTLV-1 Rex multimerization |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000404992 | - | 4 | 25 | 1_679 | 100.33333333333333 | 1072.0 | Region | Note=Necessary for HTLV-1 Rex-mediated mRNA export |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000404992 | - | 4 | 25 | 411_414 | 100.33333333333333 | 1072.0 | Region | Note=Necessary for HTLV-1 Rex multimerization |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000406957 | - | 5 | 26 | 1_679 | 100.33333333333333 | 1072.0 | Region | Note=Necessary for HTLV-1 Rex-mediated mRNA export |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000406957 | - | 5 | 26 | 411_414 | 100.33333333333333 | 1072.0 | Region | Note=Necessary for HTLV-1 Rex multimerization |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000401558 | - | 4 | 25 | 1002_1039 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 10 |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000401558 | - | 4 | 25 | 217_240 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 1 |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000401558 | - | 4 | 25 | 241_277 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 2 |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000401558 | - | 4 | 25 | 354_472 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 3 |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000401558 | - | 4 | 25 | 515_553 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 4 |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000401558 | - | 4 | 25 | 560_597 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 5 |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000401558 | - | 4 | 25 | 602_639 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 6 |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000401558 | - | 4 | 25 | 775_813 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 7 |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000401558 | - | 4 | 25 | 885_916 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 8 |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000401558 | - | 4 | 25 | 917_954 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 9 |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000404992 | - | 4 | 25 | 1002_1039 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 10 |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000404992 | - | 4 | 25 | 217_240 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 1 |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000404992 | - | 4 | 25 | 241_277 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 2 |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000404992 | - | 4 | 25 | 354_472 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 3 |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000404992 | - | 4 | 25 | 515_553 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 4 |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000404992 | - | 4 | 25 | 560_597 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 5 |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000404992 | - | 4 | 25 | 602_639 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 6 |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000404992 | - | 4 | 25 | 775_813 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 7 |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000404992 | - | 4 | 25 | 885_916 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 8 |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000404992 | - | 4 | 25 | 917_954 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 9 |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000406957 | - | 5 | 26 | 1002_1039 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 10 |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000406957 | - | 5 | 26 | 217_240 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 1 |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000406957 | - | 5 | 26 | 241_277 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 2 |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000406957 | - | 5 | 26 | 354_472 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 3 |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000406957 | - | 5 | 26 | 515_553 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 4 |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000406957 | - | 5 | 26 | 560_597 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 5 |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000406957 | - | 5 | 26 | 602_639 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 6 |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000406957 | - | 5 | 26 | 775_813 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 7 |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000406957 | - | 5 | 26 | 885_916 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 8 |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000406957 | - | 5 | 26 | 917_954 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 9 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000401558 | - | 4 | 25 | 1002_1039 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 10 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000401558 | - | 4 | 25 | 217_240 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 1 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000401558 | - | 4 | 25 | 241_277 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 2 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000401558 | - | 4 | 25 | 354_472 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 3 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000401558 | - | 4 | 25 | 515_553 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 4 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000401558 | - | 4 | 25 | 560_597 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 5 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000401558 | - | 4 | 25 | 602_639 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 6 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000401558 | - | 4 | 25 | 775_813 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 7 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000401558 | - | 4 | 25 | 885_916 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 8 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000401558 | - | 4 | 25 | 917_954 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 9 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000404992 | - | 4 | 25 | 1002_1039 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 10 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000404992 | - | 4 | 25 | 217_240 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 1 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000404992 | - | 4 | 25 | 241_277 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 2 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000404992 | - | 4 | 25 | 354_472 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 3 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000404992 | - | 4 | 25 | 515_553 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 4 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000404992 | - | 4 | 25 | 560_597 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 5 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000404992 | - | 4 | 25 | 602_639 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 6 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000404992 | - | 4 | 25 | 775_813 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 7 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000404992 | - | 4 | 25 | 885_916 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 8 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000404992 | - | 4 | 25 | 917_954 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 9 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000406957 | - | 5 | 26 | 1002_1039 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 10 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000406957 | - | 5 | 26 | 217_240 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 1 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000406957 | - | 5 | 26 | 241_277 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 2 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000406957 | - | 5 | 26 | 354_472 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 3 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000406957 | - | 5 | 26 | 515_553 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 4 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000406957 | - | 5 | 26 | 560_597 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 5 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000406957 | - | 5 | 26 | 602_639 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 6 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000406957 | - | 5 | 26 | 775_813 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 7 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000406957 | - | 5 | 26 | 885_916 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 8 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000406957 | - | 5 | 26 | 917_954 | 100.33333333333333 | 1072.0 | Repeat | Note=HEAT 9 |
Tgene | USP34 | chr2:61749746 | chr2:61448741 | ENST00000398571 | 64 | 80 | 1894_2239 | 2598.0 | 3547.0 | Domain | Note=USP | |
Tgene | USP34 | chr2:61749746 | chr2:61449798 | ENST00000398571 | 63 | 80 | 1894_2239 | 2583.0 | 3547.0 | Domain | Note=USP |
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Fusion Gene Sequence for XPO1-USP34 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000401558_ENST00000398571_TCGA-AC-A8OQ-01A_XPO1_chr2_61749746_-_USP34_chr2_61448741_length(transcript)=4515nt_BP=1029nt CAACCGGTTCCGAGTTTGAGGCACTAGGAGGAGGGGGAGAAGCGGCTGCAGCGGCCGCGGCAGGAGCAGCGGGAGCTACAGCATCAGCAA GAGCAACAGTAGCTACAGCCCCGGCGGCGGTGCCTGTTCCAGTCTTTGCTGCTGCAGTCCGTGCAACCACCCAGAGGGGGAGGGGGGAAC CACCAGTCGCTGAGGAACAAGAGAAGGGGGGAAAGTTTAGGCGAGCCTTGGGGGGGGGGGGGCCAGCGCCGGAGCCGCGTGAGAGAGGGA GCCGTGTTTTGGTAGGGGGGAGTCGGACTGCAACTGGCAGCAGAGCGTCTCCCCGGCCGTGTGGACTCTACACCCCCTACTCCTGCCGCT TCTGCTGCTGCCTGTGGCTGGAGGGTCCCCCTGGGGCTGAATCTTTGGGACTTGACCCCGTTCCCTCCCCCTTCCCTCACTCCCCAGCCG GGCGGGAGCATTTATTCCCCAGATTAATTCCCCTTTTGGGGGGGGGCGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGGGGAAG CGTCCCTGAAATAGTAAATATTATTGAGCTCTTTTTGCCCTTTTCCTGTCCGTTTTTTTAATTTCCTTTTTTGAGGTGGGAAAACTGAAA CCCACCTTGATTCGTCCCCTCTCCCCCCTCCCCACCTTCCCTCGCCCTAATCCCCCAACGAGGAAGGAAGGAGCAGTTGGTTCAATCTCT GGTAATCTATGCCAGCAATTATGACAATGTTAGCAGACCATGCAGCTCGTCAGCTGCTTGATTTCAGCCAAAAACTGGATATCAACTTAT TAGATAATGTGGTGAATTGCTTATACCATGGAGAAGGAGCCCAGCAAAGAATGGCTCAAGAAGTACTGACACATTTAAAGGAGCATCCTG ATGCTTGGACAAGAGTCGACACAATTTTGGAATTTTCTCAGAATATGAATACGAAATACTATGGACTACAAATTTTGGAAAATGTGATAA AAACAAGGTGGAAGATTCTTCCAAGGAACCAGTGCGAAGGCAGCCAATCCTTTCTTTAAGTTGTTGACTATGCTAATGGAGTTTGCTGGT GGACCTCCAGGAATGCCTCCCTTTGCATCTTATATTCTGCAGAGGATATGGGAGGTGATTGAATACAATCCTTCTCAGTGTCTAGATTGG TTGGCAGTGCAGACACCCCGAAATAAACTGGCACACAGCTGGGTCTTACAGAATATGGAAAACTGGGTCGAGCGGTTTCTTTTGGCTCAC AATTATCCTAGAGTGAGGACTTCTGCAGCTTATCTTCTGGTGTCCCTTATACCAAGCAATTCATTCCGTCAGATGTTCCGGTCAACAAGG TCTTTGCACATCCCAACCCGTGACCTTCCACTCAGTCCAGACACAACAGTAGTCCTACATCAGGTCTACAACGTGCTCCTTGGTTTGCTC TCAAGAGCCAAACTTTATGTTGATGCTGCTGTTCATGGCACTACAAAGCTAGTGCCCTATTTTAGCTTTATGACTTACTGTTTAATTTCC AAAACTGAGAAGCTGATGTTTTCCACATATTTCATGGATTTGTGGAACCTTTTCCAGCCTAAACTTTCTGAGCCAGCAATAGCTACAAAT CACAATAAACAGGCTTTGCTTTCATTTTGGTACAATGTCTGTGCTGACTGTCCAGAGAATATCCGCCTTATTGTTCAGAACCCAGTGGTA ACCAAGAACATTGCCTTCAATTACATCCTTGCTGACCATGATGATCAGGATGTGGTGCTTTTTAACCGTGGGATGCTGCCAGCGTACTAT GGCATTCTGAGGCTCTGCTGTGAGCAGTCTCCTGCATTCACACGACAACTGGCTTCTCACCAGAACATCCAGTGGGCCTTTAAGAATCTT ACACCACATGCCAGCCAATACCCTGGAGCAGTAGAAGAACTGTTTAACCTGATGCAGCTGTTTATAGCTCAGAGGCCAGATATGAGAGAA GAAGAATTAGAAGATATTAAACAGTTCAAGAAAACAACCATAAGTTGTTACTTACGTTGCTTAGATGGCCGCTCCTGCTGGACTACTTTA ATAAGTGCCTTCAGAATACTATTAGAATCTGATGAAGACAGACTTCTTGTTGTATTTAATCGAGGATTGATTCTAATGACAGAGTCTTTC AACACTTTGCACATGATGTATCACGAAGCTACAGCTTGCCATGTGACTGGAGATTTAGTAGAACTTCTGTCAATATTTCTTTCGGTTTTG AAGTCTACACGCCCTTATCTTCAGAGAAAAGATGTGAAACAAGCATTAATCCAGTGGCAGGAGCGAATTGAATTTGCCCATAAACTGTTA ACTCTTCTTAATTCCTATAGTCCTCCAGAACTTAGAAATGCCTGTATAGATGTCCTCAAGGAACTTGTACTTTTGAGTCCCCATGATTTT CTTCATACTCTGGTTCCCTTTCTACAACACAACCATTGTACTTACCATCACAGTAATATACCAATGTCTCTTGGACCTTATTTCCCTTGT CGAGAAAATATCAAGCTAATAGGAGGGAAAAGCAATATTCGGCCTCCGCGCCCTGAACTCAATATGTGCCTCTTGCCCACAATGGTGGAA ACCAGTAAGGGCAAAGATGACGTTTATGATCGTATGCTGCTAGACTACTTCTTTTCTTATCATCAGTTCATCCATCTATTATGCCGAGTT GCAATCAACTGTGAAAAATTTACTGAAACATTAGTTAAGCTGAGTGTCCTAGTTGCCTATGAAGGTTTGCCACTTCATCTTGCACTGTTC CCCAAACTTTGGACTGAGCTATGCCAGACTCAGTCTGCTATGTCAAAAAACTGCATCAAGCTTTTGTGTGAAGATCCTGTTTTCGCAGAA TATATTAAATGTATCCTAATGGATGAAAGAACTTTTTTAAACAACAACATTGTCTACACGTTCATGACACATTTCCTTCTAAAGGTTCAA AGTCAAGTGTTTTCTGAAGCAAACTGTGCCAATTTGATCAGCACTCTTATTACAAACTTGATAAGCCAGTATCAGAACCTACAGTCTGAT TTCTCCAACCGAGTTGAAATTTCCAAAGCAAGTGCTTCTTTAAATGGGGACCTGAGGGCACTCGCTTTGCTCCTGTCAGTACACACTCCC AAACAGTTAAACCCAGCTCTAATTCCAACTCTGCAAGAGCTTTTAAGCAAATGCAGGACTTGTCTGCAACAGAGAAACTCACTCCAAGAG CAAGAAGCCAAAGAAAGAAAAACTAAAGATGATGAAGGAGCAACTCCCATTAAAAGGCGGCGTGTTAGCAGTGATGAGGAGCACACTGTA GACAGCTGCATCAGTGACATGAAAACAGAAACCAGGGAGGTCCTGACCCCAACGAGCACTTCTGACAATGAGACCAGAGACTCCTCAATT ATTGATCCAGGAACTGAGCAAGATCTTCCTTCCCCTGAAAATAGTTCTGTTAAAGAATACCGAATGGAAGTTCCATCTTCGTTTTCAGAA GACATGTCAAATATCAGGTCACAGCATGCAGAAGAACAGTCCAACAATGGTAGATATGACGATTGTAAAGAATTTAAAGACCTCCACTGT TCCAAGGATTCTACCCTAGCTGAGGAAGAATCTGAGTTCCCTTCTACTTCTATCTCTGCAGTTCTGTCTGACTTAGCTGACTTGAGAAGC TGTGATGGCCAAGCTTTGCCCTCCCAGGACCCTGAGGTTGCTTTATCTCTCAGTTGTGGCCATTCCAGAGGACTCTTTAGTCATATGCAG CAACATGACATTTTAGATACCCTGTGTAGGACCATTGAATCTACAATCCATGTCGTCACAAGGATATCTGGCAAAGGAAACCAAGCTGCT TCTTGACATTAGGTGTAGCATGTCTACTTTTAAGTCCCTCACCCCCAACCCCCATGCTGTTTGTATAAGTTTTGCTTATTTGTTTTTGTG CTTCAGTTTGTCCAGTGCTCTCTGCTTGAATGGCAAGATAGATTTATAGGCTTAATTCTTGGTCAGGCAGAACTCCAGATGAAAAAAACT TGCATCTTCAGTATACTTCCTAAAGGGCAATCAGATAATGGATATGTTTTATGTAATTAAGAGTTCACTTTAGTGGCTTTCATTTAATAT GGCTGTCTGGGAAGAACAGGGTTGCCTAGCCCTGTACAATGTAATTTAAACTTACAGCATTTTTACTGTGTATGATATGGTGTCCTCTGT GCCAGTTTTGTACCTTATAGAGGCAGATTGCCTCCGATCGCTGTGGTTCTTATTATCAAAATTAAGTTTACTTGTATACGGAACAACCAC AAGAAATTTGATTCTGTAAAGAATCCTCTTTAGCTGTGGCCTGGCAGTATATAAATGGTGCTTTATTTAACAGAATACCTGTGGAGGAAA TAAAGCACACTTGATGTAAAAATAATTGTTTTATTTTTATTGACATGACTGATTGATTGATTGCTATTCTGTGCACTTAATTAAACTGAT >In-frame_ENST00000401558_ENST00000398571_TCGA-AC-A8OQ-01A_XPO1_chr2_61749746_-_USP34_chr2_61448741_length(amino acids)=941AA_start in transcript=1050_stop in transcript=3875 MLTMLMEFAGGPPGMPPFASYILQRIWEVIEYNPSQCLDWLAVQTPRNKLAHSWVLQNMENWVERFLLAHNYPRVRTSAAYLLVSLIPSN SFRQMFRSTRSLHIPTRDLPLSPDTTVVLHQVYNVLLGLLSRAKLYVDAAVHGTTKLVPYFSFMTYCLISKTEKLMFSTYFMDLWNLFQP KLSEPAIATNHNKQALLSFWYNVCADCPENIRLIVQNPVVTKNIAFNYILADHDDQDVVLFNRGMLPAYYGILRLCCEQSPAFTRQLASH QNIQWAFKNLTPHASQYPGAVEELFNLMQLFIAQRPDMREEELEDIKQFKKTTISCYLRCLDGRSCWTTLISAFRILLESDEDRLLVVFN RGLILMTESFNTLHMMYHEATACHVTGDLVELLSIFLSVLKSTRPYLQRKDVKQALIQWQERIEFAHKLLTLLNSYSPPELRNACIDVLK ELVLLSPHDFLHTLVPFLQHNHCTYHHSNIPMSLGPYFPCRENIKLIGGKSNIRPPRPELNMCLLPTMVETSKGKDDVYDRMLLDYFFSY HQFIHLLCRVAINCEKFTETLVKLSVLVAYEGLPLHLALFPKLWTELCQTQSAMSKNCIKLLCEDPVFAEYIKCILMDERTFLNNNIVYT FMTHFLLKVQSQVFSEANCANLISTLITNLISQYQNLQSDFSNRVEISKASASLNGDLRALALLLSVHTPKQLNPALIPTLQELLSKCRT CLQQRNSLQEQEAKERKTKDDEGATPIKRRRVSSDEEHTVDSCISDMKTETREVLTPTSTSDNETRDSSIIDPGTEQDLPSPENSSVKEY RMEVPSSFSEDMSNIRSQHAEEQSNNGRYDDCKEFKDLHCSKDSTLAEEESEFPSTSISAVLSDLADLRSCDGQALPSQDPEVALSLSCG -------------------------------------------------------------- >In-frame_ENST00000404992_ENST00000398571_TCGA-AC-A8OQ-01A_XPO1_chr2_61749746_-_USP34_chr2_61448741_length(transcript)=4194nt_BP=708nt AGCTTGGGATGGGGGAGGGAGGGGCTGCCGACTCCCTGTTCCTCCAGCAAGGAAACTCGAAAGCTCTCCGGTTTTGCAGAGTGGCATGTG AAGTAGGAAAGATCAGTTTTTCAGGGGCCTGCACATGGGATTCCGTCTTGTAGTTCCTTTTCAGGGGTTTGAATGTGATAAGTTGGTTAA ACCATTTACTGTTGGCCTTGTACAGTGGAGGATGCCCTGATTCTCCTTCATTCCGATGTCTGTGAGTTTGGGTTGGGTGGGAGGAAGTGG TGTAGTAGAGGAAGCATTCAGTACTGGCTCAGCCCGGACCTCCTCTGATCACGCCGAGGCCATGCTGCATAGAGAAAGGGGCGGTGAACT TAAGGCGCCTGGTCTAAATGCCTCCTCCGAGTAAGGGCGGGTAATCTATGCCAGCAATTATGACAATGTTAGCAGACCATGCAGCTCGTC AGCTGCTTGATTTCAGCCAAAAACTGGATATCAACTTATTAGATAATGTGGTGAATTGCTTATACCATGGAGAAGGAGCCCAGCAAAGAA TGGCTCAAGAAGTACTGACACATTTAAAGGAGCATCCTGATGCTTGGACAAGAGTCGACACAATTTTGGAATTTTCTCAGAATATGAATA CGAAATACTATGGACTACAAATTTTGGAAAATGTGATAAAAACAAGGTGGAAGATTCTTCCAAGGAACCAGTGCGAAGGCAGCCAATCCT TTCTTTAAGTTGTTGACTATGCTAATGGAGTTTGCTGGTGGACCTCCAGGAATGCCTCCCTTTGCATCTTATATTCTGCAGAGGATATGG GAGGTGATTGAATACAATCCTTCTCAGTGTCTAGATTGGTTGGCAGTGCAGACACCCCGAAATAAACTGGCACACAGCTGGGTCTTACAG AATATGGAAAACTGGGTCGAGCGGTTTCTTTTGGCTCACAATTATCCTAGAGTGAGGACTTCTGCAGCTTATCTTCTGGTGTCCCTTATA CCAAGCAATTCATTCCGTCAGATGTTCCGGTCAACAAGGTCTTTGCACATCCCAACCCGTGACCTTCCACTCAGTCCAGACACAACAGTA GTCCTACATCAGGTCTACAACGTGCTCCTTGGTTTGCTCTCAAGAGCCAAACTTTATGTTGATGCTGCTGTTCATGGCACTACAAAGCTA GTGCCCTATTTTAGCTTTATGACTTACTGTTTAATTTCCAAAACTGAGAAGCTGATGTTTTCCACATATTTCATGGATTTGTGGAACCTT TTCCAGCCTAAACTTTCTGAGCCAGCAATAGCTACAAATCACAATAAACAGGCTTTGCTTTCATTTTGGTACAATGTCTGTGCTGACTGT CCAGAGAATATCCGCCTTATTGTTCAGAACCCAGTGGTAACCAAGAACATTGCCTTCAATTACATCCTTGCTGACCATGATGATCAGGAT GTGGTGCTTTTTAACCGTGGGATGCTGCCAGCGTACTATGGCATTCTGAGGCTCTGCTGTGAGCAGTCTCCTGCATTCACACGACAACTG GCTTCTCACCAGAACATCCAGTGGGCCTTTAAGAATCTTACACCACATGCCAGCCAATACCCTGGAGCAGTAGAAGAACTGTTTAACCTG ATGCAGCTGTTTATAGCTCAGAGGCCAGATATGAGAGAAGAAGAATTAGAAGATATTAAACAGTTCAAGAAAACAACCATAAGTTGTTAC TTACGTTGCTTAGATGGCCGCTCCTGCTGGACTACTTTAATAAGTGCCTTCAGAATACTATTAGAATCTGATGAAGACAGACTTCTTGTT GTATTTAATCGAGGATTGATTCTAATGACAGAGTCTTTCAACACTTTGCACATGATGTATCACGAAGCTACAGCTTGCCATGTGACTGGA GATTTAGTAGAACTTCTGTCAATATTTCTTTCGGTTTTGAAGTCTACACGCCCTTATCTTCAGAGAAAAGATGTGAAACAAGCATTAATC CAGTGGCAGGAGCGAATTGAATTTGCCCATAAACTGTTAACTCTTCTTAATTCCTATAGTCCTCCAGAACTTAGAAATGCCTGTATAGAT GTCCTCAAGGAACTTGTACTTTTGAGTCCCCATGATTTTCTTCATACTCTGGTTCCCTTTCTACAACACAACCATTGTACTTACCATCAC AGTAATATACCAATGTCTCTTGGACCTTATTTCCCTTGTCGAGAAAATATCAAGCTAATAGGAGGGAAAAGCAATATTCGGCCTCCGCGC CCTGAACTCAATATGTGCCTCTTGCCCACAATGGTGGAAACCAGTAAGGGCAAAGATGACGTTTATGATCGTATGCTGCTAGACTACTTC TTTTCTTATCATCAGTTCATCCATCTATTATGCCGAGTTGCAATCAACTGTGAAAAATTTACTGAAACATTAGTTAAGCTGAGTGTCCTA GTTGCCTATGAAGGTTTGCCACTTCATCTTGCACTGTTCCCCAAACTTTGGACTGAGCTATGCCAGACTCAGTCTGCTATGTCAAAAAAC TGCATCAAGCTTTTGTGTGAAGATCCTGTTTTCGCAGAATATATTAAATGTATCCTAATGGATGAAAGAACTTTTTTAAACAACAACATT GTCTACACGTTCATGACACATTTCCTTCTAAAGGTTCAAAGTCAAGTGTTTTCTGAAGCAAACTGTGCCAATTTGATCAGCACTCTTATT ACAAACTTGATAAGCCAGTATCAGAACCTACAGTCTGATTTCTCCAACCGAGTTGAAATTTCCAAAGCAAGTGCTTCTTTAAATGGGGAC CTGAGGGCACTCGCTTTGCTCCTGTCAGTACACACTCCCAAACAGTTAAACCCAGCTCTAATTCCAACTCTGCAAGAGCTTTTAAGCAAA TGCAGGACTTGTCTGCAACAGAGAAACTCACTCCAAGAGCAAGAAGCCAAAGAAAGAAAAACTAAAGATGATGAAGGAGCAACTCCCATT AAAAGGCGGCGTGTTAGCAGTGATGAGGAGCACACTGTAGACAGCTGCATCAGTGACATGAAAACAGAAACCAGGGAGGTCCTGACCCCA ACGAGCACTTCTGACAATGAGACCAGAGACTCCTCAATTATTGATCCAGGAACTGAGCAAGATCTTCCTTCCCCTGAAAATAGTTCTGTT AAAGAATACCGAATGGAAGTTCCATCTTCGTTTTCAGAAGACATGTCAAATATCAGGTCACAGCATGCAGAAGAACAGTCCAACAATGGT AGATATGACGATTGTAAAGAATTTAAAGACCTCCACTGTTCCAAGGATTCTACCCTAGCTGAGGAAGAATCTGAGTTCCCTTCTACTTCT ATCTCTGCAGTTCTGTCTGACTTAGCTGACTTGAGAAGCTGTGATGGCCAAGCTTTGCCCTCCCAGGACCCTGAGGTTGCTTTATCTCTC AGTTGTGGCCATTCCAGAGGACTCTTTAGTCATATGCAGCAACATGACATTTTAGATACCCTGTGTAGGACCATTGAATCTACAATCCAT GTCGTCACAAGGATATCTGGCAAAGGAAACCAAGCTGCTTCTTGACATTAGGTGTAGCATGTCTACTTTTAAGTCCCTCACCCCCAACCC CCATGCTGTTTGTATAAGTTTTGCTTATTTGTTTTTGTGCTTCAGTTTGTCCAGTGCTCTCTGCTTGAATGGCAAGATAGATTTATAGGC TTAATTCTTGGTCAGGCAGAACTCCAGATGAAAAAAACTTGCATCTTCAGTATACTTCCTAAAGGGCAATCAGATAATGGATATGTTTTA TGTAATTAAGAGTTCACTTTAGTGGCTTTCATTTAATATGGCTGTCTGGGAAGAACAGGGTTGCCTAGCCCTGTACAATGTAATTTAAAC TTACAGCATTTTTACTGTGTATGATATGGTGTCCTCTGTGCCAGTTTTGTACCTTATAGAGGCAGATTGCCTCCGATCGCTGTGGTTCTT ATTATCAAAATTAAGTTTACTTGTATACGGAACAACCACAAGAAATTTGATTCTGTAAAGAATCCTCTTTAGCTGTGGCCTGGCAGTATA TAAATGGTGCTTTATTTAACAGAATACCTGTGGAGGAAATAAAGCACACTTGATGTAAAAATAATTGTTTTATTTTTATTGACATGACTG >In-frame_ENST00000404992_ENST00000398571_TCGA-AC-A8OQ-01A_XPO1_chr2_61749746_-_USP34_chr2_61448741_length(amino acids)=941AA_start in transcript=729_stop in transcript=3554 MLTMLMEFAGGPPGMPPFASYILQRIWEVIEYNPSQCLDWLAVQTPRNKLAHSWVLQNMENWVERFLLAHNYPRVRTSAAYLLVSLIPSN SFRQMFRSTRSLHIPTRDLPLSPDTTVVLHQVYNVLLGLLSRAKLYVDAAVHGTTKLVPYFSFMTYCLISKTEKLMFSTYFMDLWNLFQP KLSEPAIATNHNKQALLSFWYNVCADCPENIRLIVQNPVVTKNIAFNYILADHDDQDVVLFNRGMLPAYYGILRLCCEQSPAFTRQLASH QNIQWAFKNLTPHASQYPGAVEELFNLMQLFIAQRPDMREEELEDIKQFKKTTISCYLRCLDGRSCWTTLISAFRILLESDEDRLLVVFN RGLILMTESFNTLHMMYHEATACHVTGDLVELLSIFLSVLKSTRPYLQRKDVKQALIQWQERIEFAHKLLTLLNSYSPPELRNACIDVLK ELVLLSPHDFLHTLVPFLQHNHCTYHHSNIPMSLGPYFPCRENIKLIGGKSNIRPPRPELNMCLLPTMVETSKGKDDVYDRMLLDYFFSY HQFIHLLCRVAINCEKFTETLVKLSVLVAYEGLPLHLALFPKLWTELCQTQSAMSKNCIKLLCEDPVFAEYIKCILMDERTFLNNNIVYT FMTHFLLKVQSQVFSEANCANLISTLITNLISQYQNLQSDFSNRVEISKASASLNGDLRALALLLSVHTPKQLNPALIPTLQELLSKCRT CLQQRNSLQEQEAKERKTKDDEGATPIKRRRVSSDEEHTVDSCISDMKTETREVLTPTSTSDNETRDSSIIDPGTEQDLPSPENSSVKEY RMEVPSSFSEDMSNIRSQHAEEQSNNGRYDDCKEFKDLHCSKDSTLAEEESEFPSTSISAVLSDLADLRSCDGQALPSQDPEVALSLSCG -------------------------------------------------------------- >In-frame_ENST00000401558_ENST00000398571_TCGA-AC-A8OQ-01A_XPO1_chr2_61749746_-_USP34_chr2_61449798_length(transcript)=4560nt_BP=1029nt CAACCGGTTCCGAGTTTGAGGCACTAGGAGGAGGGGGAGAAGCGGCTGCAGCGGCCGCGGCAGGAGCAGCGGGAGCTACAGCATCAGCAA GAGCAACAGTAGCTACAGCCCCGGCGGCGGTGCCTGTTCCAGTCTTTGCTGCTGCAGTCCGTGCAACCACCCAGAGGGGGAGGGGGGAAC CACCAGTCGCTGAGGAACAAGAGAAGGGGGGAAAGTTTAGGCGAGCCTTGGGGGGGGGGGGGCCAGCGCCGGAGCCGCGTGAGAGAGGGA GCCGTGTTTTGGTAGGGGGGAGTCGGACTGCAACTGGCAGCAGAGCGTCTCCCCGGCCGTGTGGACTCTACACCCCCTACTCCTGCCGCT TCTGCTGCTGCCTGTGGCTGGAGGGTCCCCCTGGGGCTGAATCTTTGGGACTTGACCCCGTTCCCTCCCCCTTCCCTCACTCCCCAGCCG GGCGGGAGCATTTATTCCCCAGATTAATTCCCCTTTTGGGGGGGGGCGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGGGGAAG CGTCCCTGAAATAGTAAATATTATTGAGCTCTTTTTGCCCTTTTCCTGTCCGTTTTTTTAATTTCCTTTTTTGAGGTGGGAAAACTGAAA CCCACCTTGATTCGTCCCCTCTCCCCCCTCCCCACCTTCCCTCGCCCTAATCCCCCAACGAGGAAGGAAGGAGCAGTTGGTTCAATCTCT GGTAATCTATGCCAGCAATTATGACAATGTTAGCAGACCATGCAGCTCGTCAGCTGCTTGATTTCAGCCAAAAACTGGATATCAACTTAT TAGATAATGTGGTGAATTGCTTATACCATGGAGAAGGAGCCCAGCAAAGAATGGCTCAAGAAGTACTGACACATTTAAAGGAGCATCCTG ATGCTTGGACAAGAGTCGACACAATTTTGGAATTTTCTCAGAATATGAATACGAAATACTATGGACTACAAATTTTGGAAAATGTGATAA AAACAAGGTGGAAGATTCTTCCAAGGAACCAGTGCGAAGATTGTATCTATGCTTTTCACATCAATAGCAAAGTTGACTCCTGAGGCAGCC AATCCTTTCTTTAAGTTGTTGACTATGCTAATGGAGTTTGCTGGTGGACCTCCAGGAATGCCTCCCTTTGCATCTTATATTCTGCAGAGG ATATGGGAGGTGATTGAATACAATCCTTCTCAGTGTCTAGATTGGTTGGCAGTGCAGACACCCCGAAATAAACTGGCACACAGCTGGGTC TTACAGAATATGGAAAACTGGGTCGAGCGGTTTCTTTTGGCTCACAATTATCCTAGAGTGAGGACTTCTGCAGCTTATCTTCTGGTGTCC CTTATACCAAGCAATTCATTCCGTCAGATGTTCCGGTCAACAAGGTCTTTGCACATCCCAACCCGTGACCTTCCACTCAGTCCAGACACA ACAGTAGTCCTACATCAGGTCTACAACGTGCTCCTTGGTTTGCTCTCAAGAGCCAAACTTTATGTTGATGCTGCTGTTCATGGCACTACA AAGCTAGTGCCCTATTTTAGCTTTATGACTTACTGTTTAATTTCCAAAACTGAGAAGCTGATGTTTTCCACATATTTCATGGATTTGTGG AACCTTTTCCAGCCTAAACTTTCTGAGCCAGCAATAGCTACAAATCACAATAAACAGGCTTTGCTTTCATTTTGGTACAATGTCTGTGCT GACTGTCCAGAGAATATCCGCCTTATTGTTCAGAACCCAGTGGTAACCAAGAACATTGCCTTCAATTACATCCTTGCTGACCATGATGAT CAGGATGTGGTGCTTTTTAACCGTGGGATGCTGCCAGCGTACTATGGCATTCTGAGGCTCTGCTGTGAGCAGTCTCCTGCATTCACACGA CAACTGGCTTCTCACCAGAACATCCAGTGGGCCTTTAAGAATCTTACACCACATGCCAGCCAATACCCTGGAGCAGTAGAAGAACTGTTT AACCTGATGCAGCTGTTTATAGCTCAGAGGCCAGATATGAGAGAAGAAGAATTAGAAGATATTAAACAGTTCAAGAAAACAACCATAAGT TGTTACTTACGTTGCTTAGATGGCCGCTCCTGCTGGACTACTTTAATAAGTGCCTTCAGAATACTATTAGAATCTGATGAAGACAGACTT CTTGTTGTATTTAATCGAGGATTGATTCTAATGACAGAGTCTTTCAACACTTTGCACATGATGTATCACGAAGCTACAGCTTGCCATGTG ACTGGAGATTTAGTAGAACTTCTGTCAATATTTCTTTCGGTTTTGAAGTCTACACGCCCTTATCTTCAGAGAAAAGATGTGAAACAAGCA TTAATCCAGTGGCAGGAGCGAATTGAATTTGCCCATAAACTGTTAACTCTTCTTAATTCCTATAGTCCTCCAGAACTTAGAAATGCCTGT ATAGATGTCCTCAAGGAACTTGTACTTTTGAGTCCCCATGATTTTCTTCATACTCTGGTTCCCTTTCTACAACACAACCATTGTACTTAC CATCACAGTAATATACCAATGTCTCTTGGACCTTATTTCCCTTGTCGAGAAAATATCAAGCTAATAGGAGGGAAAAGCAATATTCGGCCT CCGCGCCCTGAACTCAATATGTGCCTCTTGCCCACAATGGTGGAAACCAGTAAGGGCAAAGATGACGTTTATGATCGTATGCTGCTAGAC TACTTCTTTTCTTATCATCAGTTCATCCATCTATTATGCCGAGTTGCAATCAACTGTGAAAAATTTACTGAAACATTAGTTAAGCTGAGT GTCCTAGTTGCCTATGAAGGTTTGCCACTTCATCTTGCACTGTTCCCCAAACTTTGGACTGAGCTATGCCAGACTCAGTCTGCTATGTCA AAAAACTGCATCAAGCTTTTGTGTGAAGATCCTGTTTTCGCAGAATATATTAAATGTATCCTAATGGATGAAAGAACTTTTTTAAACAAC AACATTGTCTACACGTTCATGACACATTTCCTTCTAAAGGTTCAAAGTCAAGTGTTTTCTGAAGCAAACTGTGCCAATTTGATCAGCACT CTTATTACAAACTTGATAAGCCAGTATCAGAACCTACAGTCTGATTTCTCCAACCGAGTTGAAATTTCCAAAGCAAGTGCTTCTTTAAAT GGGGACCTGAGGGCACTCGCTTTGCTCCTGTCAGTACACACTCCCAAACAGTTAAACCCAGCTCTAATTCCAACTCTGCAAGAGCTTTTA AGCAAATGCAGGACTTGTCTGCAACAGAGAAACTCACTCCAAGAGCAAGAAGCCAAAGAAAGAAAAACTAAAGATGATGAAGGAGCAACT CCCATTAAAAGGCGGCGTGTTAGCAGTGATGAGGAGCACACTGTAGACAGCTGCATCAGTGACATGAAAACAGAAACCAGGGAGGTCCTG ACCCCAACGAGCACTTCTGACAATGAGACCAGAGACTCCTCAATTATTGATCCAGGAACTGAGCAAGATCTTCCTTCCCCTGAAAATAGT TCTGTTAAAGAATACCGAATGGAAGTTCCATCTTCGTTTTCAGAAGACATGTCAAATATCAGGTCACAGCATGCAGAAGAACAGTCCAAC AATGGTAGATATGACGATTGTAAAGAATTTAAAGACCTCCACTGTTCCAAGGATTCTACCCTAGCTGAGGAAGAATCTGAGTTCCCTTCT ACTTCTATCTCTGCAGTTCTGTCTGACTTAGCTGACTTGAGAAGCTGTGATGGCCAAGCTTTGCCCTCCCAGGACCCTGAGGTTGCTTTA TCTCTCAGTTGTGGCCATTCCAGAGGACTCTTTAGTCATATGCAGCAACATGACATTTTAGATACCCTGTGTAGGACCATTGAATCTACA ATCCATGTCGTCACAAGGATATCTGGCAAAGGAAACCAAGCTGCTTCTTGACATTAGGTGTAGCATGTCTACTTTTAAGTCCCTCACCCC CAACCCCCATGCTGTTTGTATAAGTTTTGCTTATTTGTTTTTGTGCTTCAGTTTGTCCAGTGCTCTCTGCTTGAATGGCAAGATAGATTT ATAGGCTTAATTCTTGGTCAGGCAGAACTCCAGATGAAAAAAACTTGCATCTTCAGTATACTTCCTAAAGGGCAATCAGATAATGGATAT GTTTTATGTAATTAAGAGTTCACTTTAGTGGCTTTCATTTAATATGGCTGTCTGGGAAGAACAGGGTTGCCTAGCCCTGTACAATGTAAT TTAAACTTACAGCATTTTTACTGTGTATGATATGGTGTCCTCTGTGCCAGTTTTGTACCTTATAGAGGCAGATTGCCTCCGATCGCTGTG GTTCTTATTATCAAAATTAAGTTTACTTGTATACGGAACAACCACAAGAAATTTGATTCTGTAAAGAATCCTCTTTAGCTGTGGCCTGGC AGTATATAAATGGTGCTTTATTTAACAGAATACCTGTGGAGGAAATAAAGCACACTTGATGTAAAAATAATTGTTTTATTTTTATTGACA >In-frame_ENST00000401558_ENST00000398571_TCGA-AC-A8OQ-01A_XPO1_chr2_61749746_-_USP34_chr2_61449798_length(amino acids)=960AA_start in transcript=1038_stop in transcript=3920 MLFTSIAKLTPEAANPFFKLLTMLMEFAGGPPGMPPFASYILQRIWEVIEYNPSQCLDWLAVQTPRNKLAHSWVLQNMENWVERFLLAHN YPRVRTSAAYLLVSLIPSNSFRQMFRSTRSLHIPTRDLPLSPDTTVVLHQVYNVLLGLLSRAKLYVDAAVHGTTKLVPYFSFMTYCLISK TEKLMFSTYFMDLWNLFQPKLSEPAIATNHNKQALLSFWYNVCADCPENIRLIVQNPVVTKNIAFNYILADHDDQDVVLFNRGMLPAYYG ILRLCCEQSPAFTRQLASHQNIQWAFKNLTPHASQYPGAVEELFNLMQLFIAQRPDMREEELEDIKQFKKTTISCYLRCLDGRSCWTTLI SAFRILLESDEDRLLVVFNRGLILMTESFNTLHMMYHEATACHVTGDLVELLSIFLSVLKSTRPYLQRKDVKQALIQWQERIEFAHKLLT LLNSYSPPELRNACIDVLKELVLLSPHDFLHTLVPFLQHNHCTYHHSNIPMSLGPYFPCRENIKLIGGKSNIRPPRPELNMCLLPTMVET SKGKDDVYDRMLLDYFFSYHQFIHLLCRVAINCEKFTETLVKLSVLVAYEGLPLHLALFPKLWTELCQTQSAMSKNCIKLLCEDPVFAEY IKCILMDERTFLNNNIVYTFMTHFLLKVQSQVFSEANCANLISTLITNLISQYQNLQSDFSNRVEISKASASLNGDLRALALLLSVHTPK QLNPALIPTLQELLSKCRTCLQQRNSLQEQEAKERKTKDDEGATPIKRRRVSSDEEHTVDSCISDMKTETREVLTPTSTSDNETRDSSII DPGTEQDLPSPENSSVKEYRMEVPSSFSEDMSNIRSQHAEEQSNNGRYDDCKEFKDLHCSKDSTLAEEESEFPSTSISAVLSDLADLRSC -------------------------------------------------------------- >In-frame_ENST00000404992_ENST00000398571_TCGA-AC-A8OQ-01A_XPO1_chr2_61749746_-_USP34_chr2_61449798_length(transcript)=4239nt_BP=708nt AGCTTGGGATGGGGGAGGGAGGGGCTGCCGACTCCCTGTTCCTCCAGCAAGGAAACTCGAAAGCTCTCCGGTTTTGCAGAGTGGCATGTG AAGTAGGAAAGATCAGTTTTTCAGGGGCCTGCACATGGGATTCCGTCTTGTAGTTCCTTTTCAGGGGTTTGAATGTGATAAGTTGGTTAA ACCATTTACTGTTGGCCTTGTACAGTGGAGGATGCCCTGATTCTCCTTCATTCCGATGTCTGTGAGTTTGGGTTGGGTGGGAGGAAGTGG TGTAGTAGAGGAAGCATTCAGTACTGGCTCAGCCCGGACCTCCTCTGATCACGCCGAGGCCATGCTGCATAGAGAAAGGGGCGGTGAACT TAAGGCGCCTGGTCTAAATGCCTCCTCCGAGTAAGGGCGGGTAATCTATGCCAGCAATTATGACAATGTTAGCAGACCATGCAGCTCGTC AGCTGCTTGATTTCAGCCAAAAACTGGATATCAACTTATTAGATAATGTGGTGAATTGCTTATACCATGGAGAAGGAGCCCAGCAAAGAA TGGCTCAAGAAGTACTGACACATTTAAAGGAGCATCCTGATGCTTGGACAAGAGTCGACACAATTTTGGAATTTTCTCAGAATATGAATA CGAAATACTATGGACTACAAATTTTGGAAAATGTGATAAAAACAAGGTGGAAGATTCTTCCAAGGAACCAGTGCGAAGATTGTATCTATG CTTTTCACATCAATAGCAAAGTTGACTCCTGAGGCAGCCAATCCTTTCTTTAAGTTGTTGACTATGCTAATGGAGTTTGCTGGTGGACCT CCAGGAATGCCTCCCTTTGCATCTTATATTCTGCAGAGGATATGGGAGGTGATTGAATACAATCCTTCTCAGTGTCTAGATTGGTTGGCA GTGCAGACACCCCGAAATAAACTGGCACACAGCTGGGTCTTACAGAATATGGAAAACTGGGTCGAGCGGTTTCTTTTGGCTCACAATTAT CCTAGAGTGAGGACTTCTGCAGCTTATCTTCTGGTGTCCCTTATACCAAGCAATTCATTCCGTCAGATGTTCCGGTCAACAAGGTCTTTG CACATCCCAACCCGTGACCTTCCACTCAGTCCAGACACAACAGTAGTCCTACATCAGGTCTACAACGTGCTCCTTGGTTTGCTCTCAAGA GCCAAACTTTATGTTGATGCTGCTGTTCATGGCACTACAAAGCTAGTGCCCTATTTTAGCTTTATGACTTACTGTTTAATTTCCAAAACT GAGAAGCTGATGTTTTCCACATATTTCATGGATTTGTGGAACCTTTTCCAGCCTAAACTTTCTGAGCCAGCAATAGCTACAAATCACAAT AAACAGGCTTTGCTTTCATTTTGGTACAATGTCTGTGCTGACTGTCCAGAGAATATCCGCCTTATTGTTCAGAACCCAGTGGTAACCAAG AACATTGCCTTCAATTACATCCTTGCTGACCATGATGATCAGGATGTGGTGCTTTTTAACCGTGGGATGCTGCCAGCGTACTATGGCATT CTGAGGCTCTGCTGTGAGCAGTCTCCTGCATTCACACGACAACTGGCTTCTCACCAGAACATCCAGTGGGCCTTTAAGAATCTTACACCA CATGCCAGCCAATACCCTGGAGCAGTAGAAGAACTGTTTAACCTGATGCAGCTGTTTATAGCTCAGAGGCCAGATATGAGAGAAGAAGAA TTAGAAGATATTAAACAGTTCAAGAAAACAACCATAAGTTGTTACTTACGTTGCTTAGATGGCCGCTCCTGCTGGACTACTTTAATAAGT GCCTTCAGAATACTATTAGAATCTGATGAAGACAGACTTCTTGTTGTATTTAATCGAGGATTGATTCTAATGACAGAGTCTTTCAACACT TTGCACATGATGTATCACGAAGCTACAGCTTGCCATGTGACTGGAGATTTAGTAGAACTTCTGTCAATATTTCTTTCGGTTTTGAAGTCT ACACGCCCTTATCTTCAGAGAAAAGATGTGAAACAAGCATTAATCCAGTGGCAGGAGCGAATTGAATTTGCCCATAAACTGTTAACTCTT CTTAATTCCTATAGTCCTCCAGAACTTAGAAATGCCTGTATAGATGTCCTCAAGGAACTTGTACTTTTGAGTCCCCATGATTTTCTTCAT ACTCTGGTTCCCTTTCTACAACACAACCATTGTACTTACCATCACAGTAATATACCAATGTCTCTTGGACCTTATTTCCCTTGTCGAGAA AATATCAAGCTAATAGGAGGGAAAAGCAATATTCGGCCTCCGCGCCCTGAACTCAATATGTGCCTCTTGCCCACAATGGTGGAAACCAGT AAGGGCAAAGATGACGTTTATGATCGTATGCTGCTAGACTACTTCTTTTCTTATCATCAGTTCATCCATCTATTATGCCGAGTTGCAATC AACTGTGAAAAATTTACTGAAACATTAGTTAAGCTGAGTGTCCTAGTTGCCTATGAAGGTTTGCCACTTCATCTTGCACTGTTCCCCAAA CTTTGGACTGAGCTATGCCAGACTCAGTCTGCTATGTCAAAAAACTGCATCAAGCTTTTGTGTGAAGATCCTGTTTTCGCAGAATATATT AAATGTATCCTAATGGATGAAAGAACTTTTTTAAACAACAACATTGTCTACACGTTCATGACACATTTCCTTCTAAAGGTTCAAAGTCAA GTGTTTTCTGAAGCAAACTGTGCCAATTTGATCAGCACTCTTATTACAAACTTGATAAGCCAGTATCAGAACCTACAGTCTGATTTCTCC AACCGAGTTGAAATTTCCAAAGCAAGTGCTTCTTTAAATGGGGACCTGAGGGCACTCGCTTTGCTCCTGTCAGTACACACTCCCAAACAG TTAAACCCAGCTCTAATTCCAACTCTGCAAGAGCTTTTAAGCAAATGCAGGACTTGTCTGCAACAGAGAAACTCACTCCAAGAGCAAGAA GCCAAAGAAAGAAAAACTAAAGATGATGAAGGAGCAACTCCCATTAAAAGGCGGCGTGTTAGCAGTGATGAGGAGCACACTGTAGACAGC TGCATCAGTGACATGAAAACAGAAACCAGGGAGGTCCTGACCCCAACGAGCACTTCTGACAATGAGACCAGAGACTCCTCAATTATTGAT CCAGGAACTGAGCAAGATCTTCCTTCCCCTGAAAATAGTTCTGTTAAAGAATACCGAATGGAAGTTCCATCTTCGTTTTCAGAAGACATG TCAAATATCAGGTCACAGCATGCAGAAGAACAGTCCAACAATGGTAGATATGACGATTGTAAAGAATTTAAAGACCTCCACTGTTCCAAG GATTCTACCCTAGCTGAGGAAGAATCTGAGTTCCCTTCTACTTCTATCTCTGCAGTTCTGTCTGACTTAGCTGACTTGAGAAGCTGTGAT GGCCAAGCTTTGCCCTCCCAGGACCCTGAGGTTGCTTTATCTCTCAGTTGTGGCCATTCCAGAGGACTCTTTAGTCATATGCAGCAACAT GACATTTTAGATACCCTGTGTAGGACCATTGAATCTACAATCCATGTCGTCACAAGGATATCTGGCAAAGGAAACCAAGCTGCTTCTTGA CATTAGGTGTAGCATGTCTACTTTTAAGTCCCTCACCCCCAACCCCCATGCTGTTTGTATAAGTTTTGCTTATTTGTTTTTGTGCTTCAG TTTGTCCAGTGCTCTCTGCTTGAATGGCAAGATAGATTTATAGGCTTAATTCTTGGTCAGGCAGAACTCCAGATGAAAAAAACTTGCATC TTCAGTATACTTCCTAAAGGGCAATCAGATAATGGATATGTTTTATGTAATTAAGAGTTCACTTTAGTGGCTTTCATTTAATATGGCTGT CTGGGAAGAACAGGGTTGCCTAGCCCTGTACAATGTAATTTAAACTTACAGCATTTTTACTGTGTATGATATGGTGTCCTCTGTGCCAGT TTTGTACCTTATAGAGGCAGATTGCCTCCGATCGCTGTGGTTCTTATTATCAAAATTAAGTTTACTTGTATACGGAACAACCACAAGAAA TTTGATTCTGTAAAGAATCCTCTTTAGCTGTGGCCTGGCAGTATATAAATGGTGCTTTATTTAACAGAATACCTGTGGAGGAAATAAAGC ACACTTGATGTAAAAATAATTGTTTTATTTTTATTGACATGACTGATTGATTGATTGCTATTCTGTGCACTTAATTAAACTGATTGTGAT >In-frame_ENST00000404992_ENST00000398571_TCGA-AC-A8OQ-01A_XPO1_chr2_61749746_-_USP34_chr2_61449798_length(amino acids)=960AA_start in transcript=717_stop in transcript=3599 MLFTSIAKLTPEAANPFFKLLTMLMEFAGGPPGMPPFASYILQRIWEVIEYNPSQCLDWLAVQTPRNKLAHSWVLQNMENWVERFLLAHN YPRVRTSAAYLLVSLIPSNSFRQMFRSTRSLHIPTRDLPLSPDTTVVLHQVYNVLLGLLSRAKLYVDAAVHGTTKLVPYFSFMTYCLISK TEKLMFSTYFMDLWNLFQPKLSEPAIATNHNKQALLSFWYNVCADCPENIRLIVQNPVVTKNIAFNYILADHDDQDVVLFNRGMLPAYYG ILRLCCEQSPAFTRQLASHQNIQWAFKNLTPHASQYPGAVEELFNLMQLFIAQRPDMREEELEDIKQFKKTTISCYLRCLDGRSCWTTLI SAFRILLESDEDRLLVVFNRGLILMTESFNTLHMMYHEATACHVTGDLVELLSIFLSVLKSTRPYLQRKDVKQALIQWQERIEFAHKLLT LLNSYSPPELRNACIDVLKELVLLSPHDFLHTLVPFLQHNHCTYHHSNIPMSLGPYFPCRENIKLIGGKSNIRPPRPELNMCLLPTMVET SKGKDDVYDRMLLDYFFSYHQFIHLLCRVAINCEKFTETLVKLSVLVAYEGLPLHLALFPKLWTELCQTQSAMSKNCIKLLCEDPVFAEY IKCILMDERTFLNNNIVYTFMTHFLLKVQSQVFSEANCANLISTLITNLISQYQNLQSDFSNRVEISKASASLNGDLRALALLLSVHTPK QLNPALIPTLQELLSKCRTCLQQRNSLQEQEAKERKTKDDEGATPIKRRRVSSDEEHTVDSCISDMKTETREVLTPTSTSDNETRDSSII DPGTEQDLPSPENSSVKEYRMEVPSSFSEDMSNIRSQHAEEQSNNGRYDDCKEFKDLHCSKDSTLAEEESEFPSTSISAVLSDLADLRSC -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for XPO1-USP34 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000401558 | - | 4 | 25 | 800_820 | 100.33333333333333 | 1072.0 | HIV-1 Rev |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000404992 | - | 4 | 25 | 800_820 | 100.33333333333333 | 1072.0 | HIV-1 Rev |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000406957 | - | 5 | 26 | 800_820 | 100.33333333333333 | 1072.0 | HIV-1 Rev |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000401558 | - | 4 | 25 | 800_820 | 100.33333333333333 | 1072.0 | HIV-1 Rev |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000404992 | - | 4 | 25 | 800_820 | 100.33333333333333 | 1072.0 | HIV-1 Rev |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000406957 | - | 5 | 26 | 800_820 | 100.33333333333333 | 1072.0 | HIV-1 Rev |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000401558 | - | 4 | 25 | 327_450 | 100.33333333333333 | 1072.0 | Ran and nuclear export complex formation |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000404992 | - | 4 | 25 | 327_450 | 100.33333333333333 | 1072.0 | Ran and nuclear export complex formation |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000406957 | - | 5 | 26 | 327_450 | 100.33333333333333 | 1072.0 | Ran and nuclear export complex formation |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000401558 | - | 4 | 25 | 327_450 | 100.33333333333333 | 1072.0 | Ran and nuclear export complex formation |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000404992 | - | 4 | 25 | 327_450 | 100.33333333333333 | 1072.0 | Ran and nuclear export complex formation |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000406957 | - | 5 | 26 | 327_450 | 100.33333333333333 | 1072.0 | Ran and nuclear export complex formation |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000401558 | - | 4 | 25 | 411_481 | 100.33333333333333 | 1072.0 | RANBP3 |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000404992 | - | 4 | 25 | 411_481 | 100.33333333333333 | 1072.0 | RANBP3 |
Hgene | XPO1 | chr2:61749746 | chr2:61448741 | ENST00000406957 | - | 5 | 26 | 411_481 | 100.33333333333333 | 1072.0 | RANBP3 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000401558 | - | 4 | 25 | 411_481 | 100.33333333333333 | 1072.0 | RANBP3 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000404992 | - | 4 | 25 | 411_481 | 100.33333333333333 | 1072.0 | RANBP3 |
Hgene | XPO1 | chr2:61749746 | chr2:61449798 | ENST00000406957 | - | 5 | 26 | 411_481 | 100.33333333333333 | 1072.0 | RANBP3 |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for XPO1-USP34 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for XPO1-USP34 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | XPO1 | C0004238 | Atrial Fibrillation | 1 | CTD_human |
Hgene | XPO1 | C0033578 | Prostatic Neoplasms | 1 | CTD_human |
Hgene | XPO1 | C0235480 | Paroxysmal atrial fibrillation | 1 | CTD_human |
Hgene | XPO1 | C0376358 | Malignant neoplasm of prostate | 1 | CTD_human |
Hgene | XPO1 | C1292754 | Mediastinal (Thymic) Large B-Cell Lymphoma | 1 | ORPHANET |
Hgene | XPO1 | C2585653 | Persistent atrial fibrillation | 1 | CTD_human |
Hgene | XPO1 | C3468561 | familial atrial fibrillation | 1 | CTD_human |
Tgene | USP34 | C0004238 | Atrial Fibrillation | 1 | CTD_human |
Tgene | USP34 | C0235480 | Paroxysmal atrial fibrillation | 1 | CTD_human |
Tgene | USP34 | C2585653 | Persistent atrial fibrillation | 1 | CTD_human |
Tgene | USP34 | C3468561 | familial atrial fibrillation | 1 | CTD_human |