|
Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:SS18L1-JAM2 (FusionGDB2 ID:HG26039TG58494) |
Fusion Gene Summary for SS18L1-JAM2 |
Fusion gene summary |
Fusion gene information | Fusion gene name: SS18L1-JAM2 | Fusion gene ID: hg26039tg58494 | Hgene | Tgene | Gene symbol | SS18L1 | JAM2 | Gene ID | 26039 | 58494 |
Gene name | SS18L1 subunit of BAF chromatin remodeling complex | junctional adhesion molecule 2 | |
Synonyms | CREST|LP2261 | C21orf43|CD322|JAM-B|JAMB|PRO245|VE-JAM|VEJAM | |
Cytomap | ('SS18L1')('JAM2') 20q13.33 | 21q21.3 | |
Type of gene | protein-coding | protein-coding | |
Description | calcium-responsive transactivatorSS18-like protein 1SS18L1, nBAF chromatin remodeling complex subunitSYT homolog 1synovial sarcoma translocation gene on chromosome 18-like 1 | junctional adhesion molecule BJAM-2JAM-IT/VE-JAMvascular endothelial junction-associated molecule | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | O75177 | . | |
Ensembl transtripts involved in fusion gene | ENST00000331758, ENST00000370848, ENST00000421564, ENST00000491916, | ||
Fusion gene scores | * DoF score | 11 X 8 X 7=616 | 8 X 8 X 4=256 |
# samples | 12 | 9 | |
** MAII score | log2(12/616*10)=-2.35989594508638 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(9/256*10)=-1.50814690367033 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: SS18L1 [Title/Abstract] AND JAM2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | SS18L1(60740570)-JAM2(27056195), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. | SS18L1-JAM2 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. SS18L1-JAM2 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. SS18L1-JAM2 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. SS18L1-JAM2 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | JAM2 | GO:0045123 | cellular extravasation | 12239159 |
Tgene | JAM2 | GO:0050901 | leukocyte tethering or rolling | 19740376 |
Tgene | JAM2 | GO:0071593 | lymphocyte aggregation | 11823489 |
Tgene | JAM2 | GO:2000403 | positive regulation of lymphocyte migration | 12239159 |
Fusion gene breakpoints across SS18L1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across JAM2 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | SKCM | TCGA-D3-A2JG-06A | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + |
Top |
Fusion Gene ORF analysis for SS18L1-JAM2 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-intron | ENST00000331758 | ENST00000477351 | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + |
5CDS-intron | ENST00000370848 | ENST00000477351 | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + |
5CDS-intron | ENST00000421564 | ENST00000477351 | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + |
In-frame | ENST00000331758 | ENST00000312957 | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + |
In-frame | ENST00000331758 | ENST00000400532 | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + |
In-frame | ENST00000331758 | ENST00000425221 | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + |
In-frame | ENST00000331758 | ENST00000480456 | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + |
In-frame | ENST00000370848 | ENST00000312957 | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + |
In-frame | ENST00000370848 | ENST00000400532 | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + |
In-frame | ENST00000370848 | ENST00000425221 | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + |
In-frame | ENST00000370848 | ENST00000480456 | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + |
In-frame | ENST00000421564 | ENST00000312957 | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + |
In-frame | ENST00000421564 | ENST00000400532 | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + |
In-frame | ENST00000421564 | ENST00000425221 | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + |
In-frame | ENST00000421564 | ENST00000480456 | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + |
intron-3CDS | ENST00000491916 | ENST00000312957 | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + |
intron-3CDS | ENST00000491916 | ENST00000400532 | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + |
intron-3CDS | ENST00000491916 | ENST00000425221 | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + |
intron-3CDS | ENST00000491916 | ENST00000480456 | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + |
intron-intron | ENST00000491916 | ENST00000477351 | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000421564 | SS18L1 | chr20 | 60740570 | + | ENST00000400532 | JAM2 | chr21 | 27056195 | + | 2111 | 971 | 55 | 1842 | 595 |
ENST00000421564 | SS18L1 | chr20 | 60740570 | + | ENST00000480456 | JAM2 | chr21 | 27056195 | + | 4691 | 971 | 55 | 1800 | 581 |
ENST00000421564 | SS18L1 | chr20 | 60740570 | + | ENST00000312957 | JAM2 | chr21 | 27056195 | + | 2052 | 971 | 55 | 1800 | 581 |
ENST00000421564 | SS18L1 | chr20 | 60740570 | + | ENST00000425221 | JAM2 | chr21 | 27056195 | + | 2357 | 971 | 55 | 1692 | 545 |
ENST00000331758 | SS18L1 | chr20 | 60740570 | + | ENST00000400532 | JAM2 | chr21 | 27056195 | + | 2082 | 942 | 26 | 1813 | 595 |
ENST00000331758 | SS18L1 | chr20 | 60740570 | + | ENST00000480456 | JAM2 | chr21 | 27056195 | + | 4662 | 942 | 26 | 1771 | 581 |
ENST00000331758 | SS18L1 | chr20 | 60740570 | + | ENST00000312957 | JAM2 | chr21 | 27056195 | + | 2023 | 942 | 26 | 1771 | 581 |
ENST00000331758 | SS18L1 | chr20 | 60740570 | + | ENST00000425221 | JAM2 | chr21 | 27056195 | + | 2328 | 942 | 26 | 1663 | 545 |
ENST00000370848 | SS18L1 | chr20 | 60740570 | + | ENST00000400532 | JAM2 | chr21 | 27056195 | + | 2065 | 925 | 0 | 1796 | 598 |
ENST00000370848 | SS18L1 | chr20 | 60740570 | + | ENST00000480456 | JAM2 | chr21 | 27056195 | + | 4645 | 925 | 0 | 1754 | 584 |
ENST00000370848 | SS18L1 | chr20 | 60740570 | + | ENST00000312957 | JAM2 | chr21 | 27056195 | + | 2006 | 925 | 0 | 1754 | 584 |
ENST00000370848 | SS18L1 | chr20 | 60740570 | + | ENST00000425221 | JAM2 | chr21 | 27056195 | + | 2311 | 925 | 0 | 1646 | 548 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000421564 | ENST00000400532 | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + | 0.007939279 | 0.9920608 |
ENST00000421564 | ENST00000480456 | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + | 0.000893502 | 0.99910647 |
ENST00000421564 | ENST00000312957 | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + | 0.004265664 | 0.9957344 |
ENST00000421564 | ENST00000425221 | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + | 0.002732066 | 0.99726796 |
ENST00000331758 | ENST00000400532 | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + | 0.007504143 | 0.9924959 |
ENST00000331758 | ENST00000480456 | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + | 0.000846798 | 0.99915326 |
ENST00000331758 | ENST00000312957 | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + | 0.004046413 | 0.99595356 |
ENST00000331758 | ENST00000425221 | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + | 0.002634582 | 0.9973654 |
ENST00000370848 | ENST00000400532 | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + | 0.010559324 | 0.98944074 |
ENST00000370848 | ENST00000480456 | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + | 0.001098735 | 0.99890125 |
ENST00000370848 | ENST00000312957 | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + | 0.00635664 | 0.9936434 |
ENST00000370848 | ENST00000425221 | SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056195 | + | 0.00348176 | 0.99651825 |
Top |
Fusion Genomic Features for SS18L1-JAM2 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056194 | + | 0.000104037 | 0.99989593 |
SS18L1 | chr20 | 60740570 | + | JAM2 | chr21 | 27056194 | + | 0.000104037 | 0.99989593 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
Top |
Fusion Protein Features for SS18L1-JAM2 |
Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr20:60740570/chr21:27056195) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
SS18L1 | . |
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | SS18L1 | chr20:60740570 | chr21:27056195 | ENST00000331758 | + | 8 | 11 | 50_53 | 305 | 397.0 | Motif | SH2-binding |
Hgene | SS18L1 | chr20:60740570 | chr21:27056195 | ENST00000370848 | + | 7 | 11 | 50_53 | 308 | 1118.0 | Motif | SH2-binding |
Hgene | SS18L1 | chr20:60740570 | chr21:27056195 | ENST00000421564 | + | 8 | 12 | 50_53 | 305 | 1125.3333333333333 | Motif | SH2-binding |
Hgene | SS18L1 | chr20:60740570 | chr21:27056195 | ENST00000331758 | + | 8 | 11 | 149_232 | 305 | 397.0 | Region | Methionine-rich intra-molecular domain |
Hgene | SS18L1 | chr20:60740570 | chr21:27056195 | ENST00000370848 | + | 7 | 11 | 149_232 | 308 | 1118.0 | Region | Methionine-rich intra-molecular domain |
Hgene | SS18L1 | chr20:60740570 | chr21:27056195 | ENST00000421564 | + | 8 | 12 | 149_232 | 305 | 1125.3333333333333 | Region | Methionine-rich intra-molecular domain |
Tgene | JAM2 | chr20:60740570 | chr21:27056195 | ENST00000400532 | 0 | 10 | 134_238 | 22 | 313.0 | Domain | Ig-like C2-type | |
Tgene | JAM2 | chr20:60740570 | chr21:27056195 | ENST00000400532 | 0 | 10 | 32_127 | 22 | 313.0 | Domain | Ig-like V-type | |
Tgene | JAM2 | chr20:60740570 | chr21:27056195 | ENST00000425221 | 0 | 9 | 134_238 | 22 | 263.0 | Domain | Ig-like C2-type | |
Tgene | JAM2 | chr20:60740570 | chr21:27056195 | ENST00000425221 | 0 | 9 | 32_127 | 22 | 263.0 | Domain | Ig-like V-type | |
Tgene | JAM2 | chr20:60740570 | chr21:27056195 | ENST00000480456 | 0 | 10 | 134_238 | 22 | 299.0 | Domain | Ig-like C2-type | |
Tgene | JAM2 | chr20:60740570 | chr21:27056195 | ENST00000480456 | 0 | 10 | 32_127 | 22 | 299.0 | Domain | Ig-like V-type | |
Tgene | JAM2 | chr20:60740570 | chr21:27056195 | ENST00000400532 | 0 | 10 | 260_298 | 22 | 313.0 | Topological domain | Cytoplasmic | |
Tgene | JAM2 | chr20:60740570 | chr21:27056195 | ENST00000400532 | 0 | 10 | 29_238 | 22 | 313.0 | Topological domain | Extracellular | |
Tgene | JAM2 | chr20:60740570 | chr21:27056195 | ENST00000425221 | 0 | 9 | 260_298 | 22 | 263.0 | Topological domain | Cytoplasmic | |
Tgene | JAM2 | chr20:60740570 | chr21:27056195 | ENST00000425221 | 0 | 9 | 29_238 | 22 | 263.0 | Topological domain | Extracellular | |
Tgene | JAM2 | chr20:60740570 | chr21:27056195 | ENST00000480456 | 0 | 10 | 260_298 | 22 | 299.0 | Topological domain | Cytoplasmic | |
Tgene | JAM2 | chr20:60740570 | chr21:27056195 | ENST00000480456 | 0 | 10 | 29_238 | 22 | 299.0 | Topological domain | Extracellular | |
Tgene | JAM2 | chr20:60740570 | chr21:27056195 | ENST00000400532 | 0 | 10 | 239_259 | 22 | 313.0 | Transmembrane | Helical | |
Tgene | JAM2 | chr20:60740570 | chr21:27056195 | ENST00000425221 | 0 | 9 | 239_259 | 22 | 263.0 | Transmembrane | Helical | |
Tgene | JAM2 | chr20:60740570 | chr21:27056195 | ENST00000480456 | 0 | 10 | 239_259 | 22 | 299.0 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | SS18L1 | chr20:60740570 | chr21:27056195 | ENST00000331758 | + | 8 | 11 | 190_396 | 305 | 397.0 | Compositional bias | Note=Gln-rich |
Hgene | SS18L1 | chr20:60740570 | chr21:27056195 | ENST00000370848 | + | 7 | 11 | 190_396 | 308 | 1118.0 | Compositional bias | Note=Gln-rich |
Hgene | SS18L1 | chr20:60740570 | chr21:27056195 | ENST00000421564 | + | 8 | 12 | 190_396 | 305 | 1125.3333333333333 | Compositional bias | Note=Gln-rich |
Hgene | SS18L1 | chr20:60740570 | chr21:27056195 | ENST00000331758 | + | 8 | 11 | 353_356 | 305 | 397.0 | Motif | SH2-binding |
Hgene | SS18L1 | chr20:60740570 | chr21:27056195 | ENST00000331758 | + | 8 | 11 | 371_379 | 305 | 397.0 | Motif | SH3-binding |
Hgene | SS18L1 | chr20:60740570 | chr21:27056195 | ENST00000331758 | + | 8 | 11 | 391_394 | 305 | 397.0 | Motif | SH2-binding |
Hgene | SS18L1 | chr20:60740570 | chr21:27056195 | ENST00000370848 | + | 7 | 11 | 353_356 | 308 | 1118.0 | Motif | SH2-binding |
Hgene | SS18L1 | chr20:60740570 | chr21:27056195 | ENST00000370848 | + | 7 | 11 | 371_379 | 308 | 1118.0 | Motif | SH3-binding |
Hgene | SS18L1 | chr20:60740570 | chr21:27056195 | ENST00000370848 | + | 7 | 11 | 391_394 | 308 | 1118.0 | Motif | SH2-binding |
Hgene | SS18L1 | chr20:60740570 | chr21:27056195 | ENST00000421564 | + | 8 | 12 | 353_356 | 305 | 1125.3333333333333 | Motif | SH2-binding |
Hgene | SS18L1 | chr20:60740570 | chr21:27056195 | ENST00000421564 | + | 8 | 12 | 371_379 | 305 | 1125.3333333333333 | Motif | SH3-binding |
Hgene | SS18L1 | chr20:60740570 | chr21:27056195 | ENST00000421564 | + | 8 | 12 | 391_394 | 305 | 1125.3333333333333 | Motif | SH2-binding |
Hgene | SS18L1 | chr20:60740570 | chr21:27056195 | ENST00000331758 | + | 8 | 11 | 246_317 | 305 | 397.0 | Region | MFD domain |
Hgene | SS18L1 | chr20:60740570 | chr21:27056195 | ENST00000331758 | + | 8 | 11 | 334_396 | 305 | 397.0 | Region | Necessary for nuclear localization |
Hgene | SS18L1 | chr20:60740570 | chr21:27056195 | ENST00000370848 | + | 7 | 11 | 246_317 | 308 | 1118.0 | Region | MFD domain |
Hgene | SS18L1 | chr20:60740570 | chr21:27056195 | ENST00000370848 | + | 7 | 11 | 334_396 | 308 | 1118.0 | Region | Necessary for nuclear localization |
Hgene | SS18L1 | chr20:60740570 | chr21:27056195 | ENST00000421564 | + | 8 | 12 | 246_317 | 305 | 1125.3333333333333 | Region | MFD domain |
Hgene | SS18L1 | chr20:60740570 | chr21:27056195 | ENST00000421564 | + | 8 | 12 | 334_396 | 305 | 1125.3333333333333 | Region | Necessary for nuclear localization |
Top |
Fusion Gene Sequence for SS18L1-JAM2 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>86669_86669_1_SS18L1-JAM2_SS18L1_chr20_60740570_ENST00000331758_JAM2_chr21_27056195_ENST00000312957_length(transcript)=2023nt_BP=942nt CACGGGCTGAGCCCCGCGCCGCCACCATGTCCGTGGCCTTCGCGTCTGCCCGGCCAAGAGGCAAAGGGGAGGTTACGCAGCAAACCATCC AGAAGATGCTGGACGAGAACCACCACCTGATCCAGTGCATCCTGGAGTACCAGAGCAAGGGCAAGACGGCCGAGTGCACGCAGTACCAGC AGATCCTGCACCGGAACCTGGTATACCTGGCCACGATCGCAGACTCCAACCAGAACATGCAGTCCCTGCTTCCTGCCCCGCCCACGCAGA ACATGAACCTGGGCCCTGGAGCCCTGACTCAGAGCGGCTCCAGCCAGGGCCTGCACTCTCAGGGCAGCCTGAGTGACGCCATCAGCACGG GCCTGCCACCCTCCTCCCTCCTGCAGGGCCAGATTGGCAACGGGCCGAGCCACGTGTCCATGCAGCAGACGGCGCCTAACACGCTGCCCA CCACCTCCATGAGCATCTCTGGGCCCGGCTACAGCCACGCGGGACCCGCCTCGCAGGGCGTCCCCATGCAGGGGCAAGGCACCATCGGCA ACTACGTGTCTCGGACCAACATCAACATGCAGTCCAACCCAGTCTCCATGATGCAGCAGCAGGCGGCCACGTCGCACTACAGCTCGGCGC AGGGCGGCAGCCAGCACTACCAGGGCCAGTCGTCCATCGCCATGATGGGGCAGGGCAGCCAGGGGAGCAGCATGATGGGGCAGCGGCCCA TGGCGCCCTACCGGCCCTCCCAGCAAGGCTCTTCCCAGCAGTACCTGGGCCAGGAGGAGTACTATGGCGAGCAGTACAGCCACAGCCAGG GCGCCGCGGAGCCCATGGGCCAGCAGTACTACCCCGACGGCCATGGCGATTACGCCTACCAGCAGTCATCCTACACGGAGCAGAGCTACG ACCGGTCCTTCGAGGAGTCCACGCAGCACTACTATGAGGGGGATCATAAGGCCTATGGGTTTTCTGCCCCAAAAGACCAACAAGTAGTCA CAGCAGTAGAGTACCAAGAGGCTATTTTAGCCTGCAAAACCCCAAAGAAGACTGTTTCCTCCAGATTAGAGTGGAAGAAACTGGGTCGGA GTGTCTCCTTTGTCTACTATCAACAGACTCTTCAAGGTGATTTTAAAAATCGAGCTGAGATGATAGATTTCAATATCCGGATCAAAAATG TGACAAGAAGTGATGCGGGGAAATATCGTTGTGAAGTTAGTGCCCCATCTGAGCAAGGCCAAAACCTGGAAGAGGATACAGTCACTCTGG AAGTATTAGTGGCTCCAGCAGTTCCATCATGTGAAGTACCCTCTTCTGCTCTGAGTGGAACTGTGGTAGAGCTACGATGTCAAGACAAAG AAGGGAATCCAGCTCCTGAATACACATGGTTTAAGGATGGCATCCGTTTGCTAGAAAATCCCAGACTTGGCTCCCAAAGCACCAACAGCT CATACACAATGAATACAAAAACTGGAACTCTGCAATTTAATACTGTTTCCAAACTGGACACTGGAGAATATTCCTGTGAAGCCCGCAATT CTGTTGGATATCGCAGGTGTCCTGGGAAACGAATGCAAGTAGATGATCTCAACATAAGTGGCATCATAGCAGCCGTAGTAGTTGTGGCCT TAGTGATTTCCGTTTGTGGCCTTGGTGTATGCTATGCTCAGAGGAAAGGCTACTTTTCAAGTAAATATATGTTCATGAAGAGTAATTCTT CATCTAAAGCCACGACAATGAGTGAAAATGATTTCAAGCACACAAAATCCTTTATAATTTAAAGACTCCACTTTAGAGATACACCAAAGC CACCGTTGTTACACAAGTTATTAAACTATTATAAAACTCTGCTTTGTCCGACATTTGCAAAGAGGTACACGAGGAAATGGAATTGGTATT TCATTTTAATTTTCATGACTACTAACTCACCTGAACTTGCTATTTTAAACAAATAGTTCTGTCGACACCTAAAATATAATCTGGCTTCTT >86669_86669_1_SS18L1-JAM2_SS18L1_chr20_60740570_ENST00000331758_JAM2_chr21_27056195_ENST00000312957_length(amino acids)=581AA_BP=305 MSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQILHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGAL TQSGSSQGLHSQGSLSDAISTGLPPSSLLQGQIGNGPSHVSMQQTAPNTLPTTSMSISGPGYSHAGPASQGVPMQGQGTIGNYVSRTNIN MQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSMMGQRPMAPYRPSQQGSSQQYLGQEEYYGEQYSHSQGAAEPMGQQ YYPDGHGDYAYQQSSYTEQSYDRSFEESTQHYYEGDHKAYGFSAPKDQQVVTAVEYQEAILACKTPKKTVSSRLEWKKLGRSVSFVYYQQ TLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQNLEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYT WFKDGIRLLENPRLGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGKRMQVDDLNISGIIAAVVVVALVISVCGLG -------------------------------------------------------------- >86669_86669_2_SS18L1-JAM2_SS18L1_chr20_60740570_ENST00000331758_JAM2_chr21_27056195_ENST00000400532_length(transcript)=2082nt_BP=942nt CACGGGCTGAGCCCCGCGCCGCCACCATGTCCGTGGCCTTCGCGTCTGCCCGGCCAAGAGGCAAAGGGGAGGTTACGCAGCAAACCATCC AGAAGATGCTGGACGAGAACCACCACCTGATCCAGTGCATCCTGGAGTACCAGAGCAAGGGCAAGACGGCCGAGTGCACGCAGTACCAGC AGATCCTGCACCGGAACCTGGTATACCTGGCCACGATCGCAGACTCCAACCAGAACATGCAGTCCCTGCTTCCTGCCCCGCCCACGCAGA ACATGAACCTGGGCCCTGGAGCCCTGACTCAGAGCGGCTCCAGCCAGGGCCTGCACTCTCAGGGCAGCCTGAGTGACGCCATCAGCACGG GCCTGCCACCCTCCTCCCTCCTGCAGGGCCAGATTGGCAACGGGCCGAGCCACGTGTCCATGCAGCAGACGGCGCCTAACACGCTGCCCA CCACCTCCATGAGCATCTCTGGGCCCGGCTACAGCCACGCGGGACCCGCCTCGCAGGGCGTCCCCATGCAGGGGCAAGGCACCATCGGCA ACTACGTGTCTCGGACCAACATCAACATGCAGTCCAACCCAGTCTCCATGATGCAGCAGCAGGCGGCCACGTCGCACTACAGCTCGGCGC AGGGCGGCAGCCAGCACTACCAGGGCCAGTCGTCCATCGCCATGATGGGGCAGGGCAGCCAGGGGAGCAGCATGATGGGGCAGCGGCCCA TGGCGCCCTACCGGCCCTCCCAGCAAGGCTCTTCCCAGCAGTACCTGGGCCAGGAGGAGTACTATGGCGAGCAGTACAGCCACAGCCAGG GCGCCGCGGAGCCCATGGGCCAGCAGTACTACCCCGACGGCCATGGCGATTACGCCTACCAGCAGTCATCCTACACGGAGCAGAGCTACG ACCGGTCCTTCGAGGAGTCCACGCAGCACTACTATGAGGGGGATCATAAGGCCTATGGGTTTTCTGCCCCAAAAGACCAACAAGTAGTCA CAGCAGTAGAGTACCAAGAGGCTATTTTAGCCTGCAAAACCCCAAAGAAGACTGTTTCCTCCAGATTAGAGTGGAAGAAACTGGGTCGGA GTGTCTCCTTTGTCTACTATCAACAGACTCTTCAAGGTGATTTTAAAAATCGAGCTGAGATGATAGATTTCAATATCCGGATCAAAAATG TGACAAGAAGTGATGCGGGGAAATATCGTTGTGAAGTTAGTGCCCCATCTGAGCAAGGCCAAAACCTGGAAGAGGATACAGTCACTCTGG AAGTATTAGTGGCTCCAGCAGTTCCATCATGTGAAGTACCCTCTTCTGCTCTGAGTGGAACTGTGGTAGAGCTACGATGTCAAGACAAAG AAGGGAATCCAGCTCCTGAATACACATGGTTTAAGGATGGCATCCGTTTGCTAGAAAATCCCAGACTTGGCTCCCAAAGCACCAACAGCT CATACACAATGAATACAAAAACTGGAACTCTGCAATTTAATACTGTTTCCAAACTGGACACTGGAGAATATTCCTGTGAAGCCCGCAATT CTGTTGGATATCGCAGGTGTCCTGGGAAACGAATGCAAGTAGATGATCTCAACATAAGTGGCATCATAGCAGCCGTAGTAGTTGTGGCCT TAGTGATTTCCGTTTGTGGCCTTGGTGTATGCTATGCTCAGAGGAAAGGCTACTTTTCAAAAGAAACCTCCTTCCAGAAGAGTAATTCTT CATCTAAAGCCACGACAATGAGTGAAAATGTGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGAAGGCCGCGGCGGGCGGATCACGAG GTCAGGAGTTCTAGACCAGTCTGGCCAATATGGTGAAACCCCATCTCTACTAAAATACAAAAATTAGCTGGGCATGGTGGCATGTGCCTG CAGTTCCAGCTGCTTGGGAGACAGGAGAATCACTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCTGAGATCACGCCACTGCAGTCCAGCC TGGGTAACAGAGCAAGATTCCATCTCAAAAAATAAAATAAATAAATAAATAAATACTGGTTTTTACCTGTAGAATTCTTACAATAAATAT >86669_86669_2_SS18L1-JAM2_SS18L1_chr20_60740570_ENST00000331758_JAM2_chr21_27056195_ENST00000400532_length(amino acids)=595AA_BP=305 MSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQILHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGAL TQSGSSQGLHSQGSLSDAISTGLPPSSLLQGQIGNGPSHVSMQQTAPNTLPTTSMSISGPGYSHAGPASQGVPMQGQGTIGNYVSRTNIN MQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSMMGQRPMAPYRPSQQGSSQQYLGQEEYYGEQYSHSQGAAEPMGQQ YYPDGHGDYAYQQSSYTEQSYDRSFEESTQHYYEGDHKAYGFSAPKDQQVVTAVEYQEAILACKTPKKTVSSRLEWKKLGRSVSFVYYQQ TLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQNLEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYT WFKDGIRLLENPRLGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGKRMQVDDLNISGIIAAVVVVALVISVCGLG -------------------------------------------------------------- >86669_86669_3_SS18L1-JAM2_SS18L1_chr20_60740570_ENST00000331758_JAM2_chr21_27056195_ENST00000425221_length(transcript)=2328nt_BP=942nt CACGGGCTGAGCCCCGCGCCGCCACCATGTCCGTGGCCTTCGCGTCTGCCCGGCCAAGAGGCAAAGGGGAGGTTACGCAGCAAACCATCC AGAAGATGCTGGACGAGAACCACCACCTGATCCAGTGCATCCTGGAGTACCAGAGCAAGGGCAAGACGGCCGAGTGCACGCAGTACCAGC AGATCCTGCACCGGAACCTGGTATACCTGGCCACGATCGCAGACTCCAACCAGAACATGCAGTCCCTGCTTCCTGCCCCGCCCACGCAGA ACATGAACCTGGGCCCTGGAGCCCTGACTCAGAGCGGCTCCAGCCAGGGCCTGCACTCTCAGGGCAGCCTGAGTGACGCCATCAGCACGG GCCTGCCACCCTCCTCCCTCCTGCAGGGCCAGATTGGCAACGGGCCGAGCCACGTGTCCATGCAGCAGACGGCGCCTAACACGCTGCCCA CCACCTCCATGAGCATCTCTGGGCCCGGCTACAGCCACGCGGGACCCGCCTCGCAGGGCGTCCCCATGCAGGGGCAAGGCACCATCGGCA ACTACGTGTCTCGGACCAACATCAACATGCAGTCCAACCCAGTCTCCATGATGCAGCAGCAGGCGGCCACGTCGCACTACAGCTCGGCGC AGGGCGGCAGCCAGCACTACCAGGGCCAGTCGTCCATCGCCATGATGGGGCAGGGCAGCCAGGGGAGCAGCATGATGGGGCAGCGGCCCA TGGCGCCCTACCGGCCCTCCCAGCAAGGCTCTTCCCAGCAGTACCTGGGCCAGGAGGAGTACTATGGCGAGCAGTACAGCCACAGCCAGG GCGCCGCGGAGCCCATGGGCCAGCAGTACTACCCCGACGGCCATGGCGATTACGCCTACCAGCAGTCATCCTACACGGAGCAGAGCTACG ACCGGTCCTTCGAGGAGTCCACGCAGCACTACTATGAGGGGGATCATAAGGCCTATGGGTTTTCTGCCCCAAAAGACCAACAAGTAGTCA CAGCAGTAGAGTACCAAGGTGATTTTAAAAATCGAGCTGAGATGATAGATTTCAATATCCGGATCAAAAATGTGACAAGAAGTGATGCGG GGAAATATCGTTGTGAAGTTAGTGCCCCATCTGAGCAAGGCCAAAACCTGGAAGAGGATACAGTCACTCTGGAAGTATTAGTGGCTCCAG CAGTTCCATCATGTGAAGTACCCTCTTCTGCTCTGAGTGGAACTGTGGTAGAGCTACGATGTCAAGACAAAGAAGGGAATCCAGCTCCTG AATACACATGGTTTAAGGATGGCATCCGTTTGCTAGAAAATCCCAGACTTGGCTCCCAAAGCACCAACAGCTCATACACAATGAATACAA AAACTGGAACTCTGCAATTTAATACTGTTTCCAAACTGGACACTGGAGAATATTCCTGTGAAGCCCGCAATTCTGTTGGATATCGCAGGT GTCCTGGGAAACGAATGCAAGTAGATGATCTCAACATAAGTGGCATCATAGCAGCCGTAGTAGTTGTGGCCTTAGTGATTTCCGTTTGTG GCCTTGGTGTATGCTATGCTCAGAGGAAAGGCTACTTTTCAAAAGAAACCTCCTTCCAGAAGAGTAATTCTTCATCTAAAGCCACGACAA TGAGTGAAAATGATTTCAAGCACACAAAATCCTTTATAATTTAAAGACTCCACTTTAGAGATACACCAAAGCCACCGTTGTTACACAAGT TATTAAACTATTATAAAACTCTGCTTTGTCCGACATTTGCAAAGAGGTACACGAGGAAATGGAATTGGTATTTCATTTTAATTTTCATGA CTACTAACTCACCTGAACTTGCTATTTTAAACAAATAGTTCTGTCGACACCTAAAATATAATCTGGCTTCTTGTGTCTGGACTAAGTTAA AAGAATTAAAATACTTTGTAATGTCCTGGGCTTTGGGAAATGTTAACCACGTCCTAACTTCTAGAGAACGTTACTAAAATATAACATACT GATTGTGAAGTCAATCCACAGGTCATGAAAATATAAATCAGACTCTGCACGAGAGTCTGATTTAGGGGGTCCAACAAATACTCTGACAGA TGCAAAAGGAACCTCTGGTCTCATTTCTGCCAGAATCCTCTTTTCTCCCCTAATATCATCCTTATTCTGATGCTCGTTCATCACTAACAC ACCCACAGAAAGGAGGAAGCGGGATGGGTCTTATGCCCAAGGATTTGCACTTTGTGTTTACTTCCATTCCTGGGAACTAAAAGCAACATC >86669_86669_3_SS18L1-JAM2_SS18L1_chr20_60740570_ENST00000331758_JAM2_chr21_27056195_ENST00000425221_length(amino acids)=545AA_BP=305 MSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQILHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGAL TQSGSSQGLHSQGSLSDAISTGLPPSSLLQGQIGNGPSHVSMQQTAPNTLPTTSMSISGPGYSHAGPASQGVPMQGQGTIGNYVSRTNIN MQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSMMGQRPMAPYRPSQQGSSQQYLGQEEYYGEQYSHSQGAAEPMGQQ YYPDGHGDYAYQQSSYTEQSYDRSFEESTQHYYEGDHKAYGFSAPKDQQVVTAVEYQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSA PSEQGQNLEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIRLLENPRLGSQSTNSSYTMNTKTGTLQFNT VSKLDTGEYSCEARNSVGYRRCPGKRMQVDDLNISGIIAAVVVVALVISVCGLGVCYAQRKGYFSKETSFQKSNSSSKATTMSENDFKHT -------------------------------------------------------------- >86669_86669_4_SS18L1-JAM2_SS18L1_chr20_60740570_ENST00000331758_JAM2_chr21_27056195_ENST00000480456_length(transcript)=4662nt_BP=942nt CACGGGCTGAGCCCCGCGCCGCCACCATGTCCGTGGCCTTCGCGTCTGCCCGGCCAAGAGGCAAAGGGGAGGTTACGCAGCAAACCATCC AGAAGATGCTGGACGAGAACCACCACCTGATCCAGTGCATCCTGGAGTACCAGAGCAAGGGCAAGACGGCCGAGTGCACGCAGTACCAGC AGATCCTGCACCGGAACCTGGTATACCTGGCCACGATCGCAGACTCCAACCAGAACATGCAGTCCCTGCTTCCTGCCCCGCCCACGCAGA ACATGAACCTGGGCCCTGGAGCCCTGACTCAGAGCGGCTCCAGCCAGGGCCTGCACTCTCAGGGCAGCCTGAGTGACGCCATCAGCACGG GCCTGCCACCCTCCTCCCTCCTGCAGGGCCAGATTGGCAACGGGCCGAGCCACGTGTCCATGCAGCAGACGGCGCCTAACACGCTGCCCA CCACCTCCATGAGCATCTCTGGGCCCGGCTACAGCCACGCGGGACCCGCCTCGCAGGGCGTCCCCATGCAGGGGCAAGGCACCATCGGCA ACTACGTGTCTCGGACCAACATCAACATGCAGTCCAACCCAGTCTCCATGATGCAGCAGCAGGCGGCCACGTCGCACTACAGCTCGGCGC AGGGCGGCAGCCAGCACTACCAGGGCCAGTCGTCCATCGCCATGATGGGGCAGGGCAGCCAGGGGAGCAGCATGATGGGGCAGCGGCCCA TGGCGCCCTACCGGCCCTCCCAGCAAGGCTCTTCCCAGCAGTACCTGGGCCAGGAGGAGTACTATGGCGAGCAGTACAGCCACAGCCAGG GCGCCGCGGAGCCCATGGGCCAGCAGTACTACCCCGACGGCCATGGCGATTACGCCTACCAGCAGTCATCCTACACGGAGCAGAGCTACG ACCGGTCCTTCGAGGAGTCCACGCAGCACTACTATGAGGGGGATCATAAGGCCTATGGGTTTTCTGCCCCAAAAGACCAACAAGTAGTCA CAGCAGTAGAGTACCAAGAGGCTATTTTAGCCTGCAAAACCCCAAAGAAGACTGTTTCCTCCAGATTAGAGTGGAAGAAACTGGGTCGGA GTGTCTCCTTTGTCTACTATCAACAGACTCTTCAAGGTGATTTTAAAAATCGAGCTGAGATGATAGATTTCAATATCCGGATCAAAAATG TGACAAGAAGTGATGCGGGGAAATATCGTTGTGAAGTTAGTGCCCCATCTGAGCAAGGCCAAAACCTGGAAGAGGATACAGTCACTCTGG AAGTATTAGTGGCTCCAGCAGTTCCATCATGTGAAGTACCCTCTTCTGCTCTGAGTGGAACTGTGGTAGAGCTACGATGTCAAGACAAAG AAGGGAATCCAGCTCCTGAATACACATGGTTTAAGGATGGCATCCGTTTGCTAGAAAATCCCAGACTTGGCTCCCAAAGCACCAACAGCT CATACACAATGAATACAAAAACTGGAACTCTGCAATTTAATACTGTTTCCAAACTGGACACTGGAGAATATTCCTGTGAAGCCCGCAATT CTGTTGGATATCGCAGGTGTCCTGGGAAACGAATGCAAGTAGATGATCTCAACATAAGTGGCATCATAGCAGCCGTAGTAGTTGTGGCCT TAGTGATTTCCGTTTGTGGCCTTGGTGTATGCTATGCTCAGAGGAAAGGCTACTTTTCAAAAGAAACCTCCTTCCAGAAGAGTAATTCTT CATCTAAAGCCACGACAATGAGTGAAAATGATTTCAAGCACACAAAATCCTTTATAATTTAAAGACTCCACTTTAGAGATACACCAAAGC CACCGTTGTTACACAAGTTATTAAACTATTATAAAACTCTGCTTTGTCCGACATTTGCAAAGAGGTACACGAGGAAATGGAATTGGTATT TCATTTTAATTTTCATGACTACTAACTCACCTGAACTTGCTATTTTAAACAAATAGTTCTGTCGACACCTAAAATATAATCTGGCTTCTT GTGTCTGGACTAAGTTAAAAGAATTAAAATACTTTGTAATGTCCTGGGCTTTGGGAAATGTTAACCACGTCCTAACTTCTAGAGAACGTT ACTAAAATATAACATACTGATTGTGAAGTCAATCCACAGGTCATGAAAATATAAATCAGACTCTGCACGAGAGTCTGATTTAGGGGGTCC AACAAATACTCTGACAGATGCAAAAGGAACCTCTGGTCTCATTTCTGCCAGAATCCTCTTTTCTCCCCTAATATCATCCTTATTCTGATG CTCGTTCATCACTAACACACCCACAGAAAGGAGGAAGCGGGATGGGTCTTATGCCCAAGGATTTGCACTTTGTGTTTACTTCCATTCCTG GGAACTAAAAGCAACATCAAAAGAAATGCCTAATGGCTGGAGCCCACAGGTGTGCACCACAGGATTTGCCTGGTGTGTGTCACTGATTTC TTCATTAAACGTAATTTAGATGGTCAAACACAAACCCAAGTGGCTTATTTCACCCCTACTGCTGCTTGCCACTGCTTCCTTCTTGTAAGA TTTCTTTGAAGAGGATCAGTGACTTTGACATCAGAACTCACCACTGGAGCCTACACAAGTTTGCAGATACCTTTCCCTGCAGGAGTGGTG ACTTCACATCTTTCTGTCTCTAAAAATTGTGCAGTGACATTCCGGGCCAAGTCCCTTAGTCAGGGGTTGACAATTCTGCTTTTGGACAAG GAGGGATGTGGAGGGAAGAAGTAATAGTCTACCAGGAAAATGAGACGAAAAAGCTCAGTATGACTCCCTGCATCTGGTACCCCTCTTGAA ACACAGTGGGCACATGAGCAATGGCTCAAACGAAAAGTGGATCTAATGTGGGTTTCTCAACCGATGAACCACAAAAGCTTCCAGCTACTA TTACAATGTGAAAATTCCAATGATCCGTTTACCAGAGCAATTAGACTATGTTAAAAATTCATATCATTTGTAACTTCTTTTAATTACTGA ATTGATATTAAAAACAAAATATGGCTAGGGCATGTCCTATTCTTCTGGGCAAATGTGGATGAAAAGGTCACTTGCTACCTTTGACAACTA TGAACATGATGGTTAATCTTCTTTCTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCACTCTGTCGCCCAGGCTGGAGTACAGTGGCACA ATCTTGGCTCACTGCAACCTCCGCCTCCCCTCCGCCTCCCAGATTCAAGCACTTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGATTATAG GCGTGTACCACCACACCTGGCTAATTTTTGTATTTTAGTAGAGAAGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACCTCTGACCTCA AATGATCCACCCCCATCAGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACTGCACTGGGCAGGTTAATCTTCTTTCAAAAGAGTCT GCTCTTTCTACCCAATTGGCGAAGCAAATCCCCAGGATTCACCGAACAAATGGATTAAGCACCCACTGAGTGCCTAGCATGTGCCTGGAC ACCAGGCCACCGGGAAGATGCTCCCCCTTTGACTTGTCTATGACATGCTATGTCTCTCACCAGATCCCTTCCTGGAGGTCGGGCTTCTGT AACATGGCTCTGCCCCCAAAATAAAATTTTCACCACGAGTCAGGGATCGGCAAACATTTTCTGTAAAGAGCCAGAAAGTAGATATTTTAA GTCATAAGGTCCCTGTTAACAACTACTTGACTCTGCCATTGTAGCACAAAGGCAGCCACAGACAAAACAAGCAAGTAGTCATGTCTGTGT TCCAATAAGACTTTATTTACAAAAACAGCAGGCACAGACAAGATTTGGCCCACAGGCATAGATTCCCAACTCATGGTGGTGAAGTACAGA AAAAAACACCTGTCTACAAGCTTTTGTAAGAAATCAGGCTAAATGTTACCTATGTTTTGGTTGGAAGATTTCTTTGGTTTGAGGAATGCT TTCCTCTTGCATTGGCATGCCAAGAGGATAGATGACTCTGAAAGACGCCTCTTCAGACATACCTGTCATCACACAAGATCAACTTCTTCA GTTTAAATGACACAAATCCATATTGTGGAAGGAAAATATGTAGTGCCTTAGCTTCACTAATAGTTGTAAAACTTCTTTTTAAGACATCAA AGGCTAGAGGATTCATTTTATGCAGTGCGAACATCTAATAACACTCTCTGTGTCAAATATATATTGTACATTACCTTAAACTATTGTAAT AGCTAGGTAAAAATCCTTGTATAAAAGAATGTTTTCCCCCACACAAAGGGCAGAGTATTGAGCACTAATTTCCTATTAAAAGTATATATA TGTATCTGTGGGTCACTGGTGTCCAGACTTGTATTTGCATTTGTGTTTACTTGAGGAACTTGAACACTAACAACTGGTAAAATCCCATTG TAATTCTTACAGCATTTTGACTTTATTTTCCTGCAGTGAATTGTGTTGTGTAAAGATTAGGGCTTTAAAATCTTATTAGCAAGCTTTGTT TTGTTTTAATTATTGTTGCTGTTGTAACTAGATTTAATTTATTTTTAGTTGGAGGTTTGACCTAAGTCTGGACCAATTGATTGCTTTTCA >86669_86669_4_SS18L1-JAM2_SS18L1_chr20_60740570_ENST00000331758_JAM2_chr21_27056195_ENST00000480456_length(amino acids)=581AA_BP=305 MSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQILHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGAL TQSGSSQGLHSQGSLSDAISTGLPPSSLLQGQIGNGPSHVSMQQTAPNTLPTTSMSISGPGYSHAGPASQGVPMQGQGTIGNYVSRTNIN MQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSMMGQRPMAPYRPSQQGSSQQYLGQEEYYGEQYSHSQGAAEPMGQQ YYPDGHGDYAYQQSSYTEQSYDRSFEESTQHYYEGDHKAYGFSAPKDQQVVTAVEYQEAILACKTPKKTVSSRLEWKKLGRSVSFVYYQQ TLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQNLEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYT WFKDGIRLLENPRLGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGKRMQVDDLNISGIIAAVVVVALVISVCGLG -------------------------------------------------------------- >86669_86669_5_SS18L1-JAM2_SS18L1_chr20_60740570_ENST00000370848_JAM2_chr21_27056195_ENST00000312957_length(transcript)=2006nt_BP=925nt ATGCAGAGTCTAAGCACAGAGGCCAGATACGTCCCAAGAGTCCCCCAGCACAGAGATCAGATAAGTCCCAGGAGTCCCCAGCACGGAGGC CAGATATGTCCCAGGAGTCCCCTGCACAGAGGCCAGATATGTCCCAGGAGTCCCCCAGCACGGAGGTACCAGCAGATCCTGCACCGGAAC CTGGTATACCTGGCCACGATCGCAGACTCCAACCAGAACATGCAGTCCCTGCTTCCTGCCCCGCCCACGCAGAACATGAACCTGGGCCCT GGAGCCCTGACTCAGAGCGGCTCCAGCCAGGGCCTGCACTCTCAGGGCAGCCTGAGTGACGCCATCAGCACGGGCCTGCCACCCTCCTCC CTCCTGCAGGGCCAGATTGGCAACGGGCCGAGCCACGTGTCCATGCAGCAGACGGCGCCTAACACGCTGCCCACCACCTCCATGAGCATC TCTGGGCCCGGCTACAGCCACGCGGGACCCGCCTCGCAGGGCGTCCCCATGCAGGGGCAAGGCACCATCGGCAACTACGTGTCTCGGACC AACATCAACATGCAGTCCAACCCAGTCTCCATGATGCAGCAGCAGGCGGCCACGTCGCACTACAGCTCGGCGCAGGGCGGCAGCCAGCAC TACCAGGGCCAGTCGTCCATCGCCATGATGGGGCAGGGCAGCCAGGGGAGCAGCATGATGGGGCAGCGGCCCATGGCGCCCTACCGGCCC TCCCAGCAAGGCTCTTCCCAGCAGTACCTGGGCCAGGAGGAGTACTATGGCGAGCAGTACAGCCACAGCCAGGGCGCCGCGGAGCCCATG GGCCAGCAGTACTACCCCGACGGCCATGGCGATTACGCCTACCAGCAGTCATCCTACACGGAGCAGAGCTACGACCGGTCCTTCGAGGAG TCCACGCAGCACTACTATGAGGGGGATCATAAGGCCTATGGGTTTTCTGCCCCAAAAGACCAACAAGTAGTCACAGCAGTAGAGTACCAA GAGGCTATTTTAGCCTGCAAAACCCCAAAGAAGACTGTTTCCTCCAGATTAGAGTGGAAGAAACTGGGTCGGAGTGTCTCCTTTGTCTAC TATCAACAGACTCTTCAAGGTGATTTTAAAAATCGAGCTGAGATGATAGATTTCAATATCCGGATCAAAAATGTGACAAGAAGTGATGCG GGGAAATATCGTTGTGAAGTTAGTGCCCCATCTGAGCAAGGCCAAAACCTGGAAGAGGATACAGTCACTCTGGAAGTATTAGTGGCTCCA GCAGTTCCATCATGTGAAGTACCCTCTTCTGCTCTGAGTGGAACTGTGGTAGAGCTACGATGTCAAGACAAAGAAGGGAATCCAGCTCCT GAATACACATGGTTTAAGGATGGCATCCGTTTGCTAGAAAATCCCAGACTTGGCTCCCAAAGCACCAACAGCTCATACACAATGAATACA AAAACTGGAACTCTGCAATTTAATACTGTTTCCAAACTGGACACTGGAGAATATTCCTGTGAAGCCCGCAATTCTGTTGGATATCGCAGG TGTCCTGGGAAACGAATGCAAGTAGATGATCTCAACATAAGTGGCATCATAGCAGCCGTAGTAGTTGTGGCCTTAGTGATTTCCGTTTGT GGCCTTGGTGTATGCTATGCTCAGAGGAAAGGCTACTTTTCAAGTAAATATATGTTCATGAAGAGTAATTCTTCATCTAAAGCCACGACA ATGAGTGAAAATGATTTCAAGCACACAAAATCCTTTATAATTTAAAGACTCCACTTTAGAGATACACCAAAGCCACCGTTGTTACACAAG TTATTAAACTATTATAAAACTCTGCTTTGTCCGACATTTGCAAAGAGGTACACGAGGAAATGGAATTGGTATTTCATTTTAATTTTCATG ACTACTAACTCACCTGAACTTGCTATTTTAAACAAATAGTTCTGTCGACACCTAAAATATAATCTGGCTTCTTGTGTCTGGACTAAGTTA >86669_86669_5_SS18L1-JAM2_SS18L1_chr20_60740570_ENST00000370848_JAM2_chr21_27056195_ENST00000312957_length(amino acids)=584AA_BP=308 MQSLSTEARYVPRVPQHRDQISPRSPQHGGQICPRSPLHRGQICPRSPPARRYQQILHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGP GALTQSGSSQGLHSQGSLSDAISTGLPPSSLLQGQIGNGPSHVSMQQTAPNTLPTTSMSISGPGYSHAGPASQGVPMQGQGTIGNYVSRT NINMQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSMMGQRPMAPYRPSQQGSSQQYLGQEEYYGEQYSHSQGAAEPM GQQYYPDGHGDYAYQQSSYTEQSYDRSFEESTQHYYEGDHKAYGFSAPKDQQVVTAVEYQEAILACKTPKKTVSSRLEWKKLGRSVSFVY YQQTLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQNLEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAP EYTWFKDGIRLLENPRLGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGKRMQVDDLNISGIIAAVVVVALVISVC -------------------------------------------------------------- >86669_86669_6_SS18L1-JAM2_SS18L1_chr20_60740570_ENST00000370848_JAM2_chr21_27056195_ENST00000400532_length(transcript)=2065nt_BP=925nt ATGCAGAGTCTAAGCACAGAGGCCAGATACGTCCCAAGAGTCCCCCAGCACAGAGATCAGATAAGTCCCAGGAGTCCCCAGCACGGAGGC CAGATATGTCCCAGGAGTCCCCTGCACAGAGGCCAGATATGTCCCAGGAGTCCCCCAGCACGGAGGTACCAGCAGATCCTGCACCGGAAC CTGGTATACCTGGCCACGATCGCAGACTCCAACCAGAACATGCAGTCCCTGCTTCCTGCCCCGCCCACGCAGAACATGAACCTGGGCCCT GGAGCCCTGACTCAGAGCGGCTCCAGCCAGGGCCTGCACTCTCAGGGCAGCCTGAGTGACGCCATCAGCACGGGCCTGCCACCCTCCTCC CTCCTGCAGGGCCAGATTGGCAACGGGCCGAGCCACGTGTCCATGCAGCAGACGGCGCCTAACACGCTGCCCACCACCTCCATGAGCATC TCTGGGCCCGGCTACAGCCACGCGGGACCCGCCTCGCAGGGCGTCCCCATGCAGGGGCAAGGCACCATCGGCAACTACGTGTCTCGGACC AACATCAACATGCAGTCCAACCCAGTCTCCATGATGCAGCAGCAGGCGGCCACGTCGCACTACAGCTCGGCGCAGGGCGGCAGCCAGCAC TACCAGGGCCAGTCGTCCATCGCCATGATGGGGCAGGGCAGCCAGGGGAGCAGCATGATGGGGCAGCGGCCCATGGCGCCCTACCGGCCC TCCCAGCAAGGCTCTTCCCAGCAGTACCTGGGCCAGGAGGAGTACTATGGCGAGCAGTACAGCCACAGCCAGGGCGCCGCGGAGCCCATG GGCCAGCAGTACTACCCCGACGGCCATGGCGATTACGCCTACCAGCAGTCATCCTACACGGAGCAGAGCTACGACCGGTCCTTCGAGGAG TCCACGCAGCACTACTATGAGGGGGATCATAAGGCCTATGGGTTTTCTGCCCCAAAAGACCAACAAGTAGTCACAGCAGTAGAGTACCAA GAGGCTATTTTAGCCTGCAAAACCCCAAAGAAGACTGTTTCCTCCAGATTAGAGTGGAAGAAACTGGGTCGGAGTGTCTCCTTTGTCTAC TATCAACAGACTCTTCAAGGTGATTTTAAAAATCGAGCTGAGATGATAGATTTCAATATCCGGATCAAAAATGTGACAAGAAGTGATGCG GGGAAATATCGTTGTGAAGTTAGTGCCCCATCTGAGCAAGGCCAAAACCTGGAAGAGGATACAGTCACTCTGGAAGTATTAGTGGCTCCA GCAGTTCCATCATGTGAAGTACCCTCTTCTGCTCTGAGTGGAACTGTGGTAGAGCTACGATGTCAAGACAAAGAAGGGAATCCAGCTCCT GAATACACATGGTTTAAGGATGGCATCCGTTTGCTAGAAAATCCCAGACTTGGCTCCCAAAGCACCAACAGCTCATACACAATGAATACA AAAACTGGAACTCTGCAATTTAATACTGTTTCCAAACTGGACACTGGAGAATATTCCTGTGAAGCCCGCAATTCTGTTGGATATCGCAGG TGTCCTGGGAAACGAATGCAAGTAGATGATCTCAACATAAGTGGCATCATAGCAGCCGTAGTAGTTGTGGCCTTAGTGATTTCCGTTTGT GGCCTTGGTGTATGCTATGCTCAGAGGAAAGGCTACTTTTCAAAAGAAACCTCCTTCCAGAAGAGTAATTCTTCATCTAAAGCCACGACA ATGAGTGAAAATGTGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGAAGGCCGCGGCGGGCGGATCACGAGGTCAGGAGTTCTAGACC AGTCTGGCCAATATGGTGAAACCCCATCTCTACTAAAATACAAAAATTAGCTGGGCATGGTGGCATGTGCCTGCAGTTCCAGCTGCTTGG GAGACAGGAGAATCACTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCTGAGATCACGCCACTGCAGTCCAGCCTGGGTAACAGAGCAAGA >86669_86669_6_SS18L1-JAM2_SS18L1_chr20_60740570_ENST00000370848_JAM2_chr21_27056195_ENST00000400532_length(amino acids)=598AA_BP=308 MQSLSTEARYVPRVPQHRDQISPRSPQHGGQICPRSPLHRGQICPRSPPARRYQQILHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGP GALTQSGSSQGLHSQGSLSDAISTGLPPSSLLQGQIGNGPSHVSMQQTAPNTLPTTSMSISGPGYSHAGPASQGVPMQGQGTIGNYVSRT NINMQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSMMGQRPMAPYRPSQQGSSQQYLGQEEYYGEQYSHSQGAAEPM GQQYYPDGHGDYAYQQSSYTEQSYDRSFEESTQHYYEGDHKAYGFSAPKDQQVVTAVEYQEAILACKTPKKTVSSRLEWKKLGRSVSFVY YQQTLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQNLEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAP EYTWFKDGIRLLENPRLGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGKRMQVDDLNISGIIAAVVVVALVISVC -------------------------------------------------------------- >86669_86669_7_SS18L1-JAM2_SS18L1_chr20_60740570_ENST00000370848_JAM2_chr21_27056195_ENST00000425221_length(transcript)=2311nt_BP=925nt ATGCAGAGTCTAAGCACAGAGGCCAGATACGTCCCAAGAGTCCCCCAGCACAGAGATCAGATAAGTCCCAGGAGTCCCCAGCACGGAGGC CAGATATGTCCCAGGAGTCCCCTGCACAGAGGCCAGATATGTCCCAGGAGTCCCCCAGCACGGAGGTACCAGCAGATCCTGCACCGGAAC CTGGTATACCTGGCCACGATCGCAGACTCCAACCAGAACATGCAGTCCCTGCTTCCTGCCCCGCCCACGCAGAACATGAACCTGGGCCCT GGAGCCCTGACTCAGAGCGGCTCCAGCCAGGGCCTGCACTCTCAGGGCAGCCTGAGTGACGCCATCAGCACGGGCCTGCCACCCTCCTCC CTCCTGCAGGGCCAGATTGGCAACGGGCCGAGCCACGTGTCCATGCAGCAGACGGCGCCTAACACGCTGCCCACCACCTCCATGAGCATC TCTGGGCCCGGCTACAGCCACGCGGGACCCGCCTCGCAGGGCGTCCCCATGCAGGGGCAAGGCACCATCGGCAACTACGTGTCTCGGACC AACATCAACATGCAGTCCAACCCAGTCTCCATGATGCAGCAGCAGGCGGCCACGTCGCACTACAGCTCGGCGCAGGGCGGCAGCCAGCAC TACCAGGGCCAGTCGTCCATCGCCATGATGGGGCAGGGCAGCCAGGGGAGCAGCATGATGGGGCAGCGGCCCATGGCGCCCTACCGGCCC TCCCAGCAAGGCTCTTCCCAGCAGTACCTGGGCCAGGAGGAGTACTATGGCGAGCAGTACAGCCACAGCCAGGGCGCCGCGGAGCCCATG GGCCAGCAGTACTACCCCGACGGCCATGGCGATTACGCCTACCAGCAGTCATCCTACACGGAGCAGAGCTACGACCGGTCCTTCGAGGAG TCCACGCAGCACTACTATGAGGGGGATCATAAGGCCTATGGGTTTTCTGCCCCAAAAGACCAACAAGTAGTCACAGCAGTAGAGTACCAA GGTGATTTTAAAAATCGAGCTGAGATGATAGATTTCAATATCCGGATCAAAAATGTGACAAGAAGTGATGCGGGGAAATATCGTTGTGAA GTTAGTGCCCCATCTGAGCAAGGCCAAAACCTGGAAGAGGATACAGTCACTCTGGAAGTATTAGTGGCTCCAGCAGTTCCATCATGTGAA GTACCCTCTTCTGCTCTGAGTGGAACTGTGGTAGAGCTACGATGTCAAGACAAAGAAGGGAATCCAGCTCCTGAATACACATGGTTTAAG GATGGCATCCGTTTGCTAGAAAATCCCAGACTTGGCTCCCAAAGCACCAACAGCTCATACACAATGAATACAAAAACTGGAACTCTGCAA TTTAATACTGTTTCCAAACTGGACACTGGAGAATATTCCTGTGAAGCCCGCAATTCTGTTGGATATCGCAGGTGTCCTGGGAAACGAATG CAAGTAGATGATCTCAACATAAGTGGCATCATAGCAGCCGTAGTAGTTGTGGCCTTAGTGATTTCCGTTTGTGGCCTTGGTGTATGCTAT GCTCAGAGGAAAGGCTACTTTTCAAAAGAAACCTCCTTCCAGAAGAGTAATTCTTCATCTAAAGCCACGACAATGAGTGAAAATGATTTC AAGCACACAAAATCCTTTATAATTTAAAGACTCCACTTTAGAGATACACCAAAGCCACCGTTGTTACACAAGTTATTAAACTATTATAAA ACTCTGCTTTGTCCGACATTTGCAAAGAGGTACACGAGGAAATGGAATTGGTATTTCATTTTAATTTTCATGACTACTAACTCACCTGAA CTTGCTATTTTAAACAAATAGTTCTGTCGACACCTAAAATATAATCTGGCTTCTTGTGTCTGGACTAAGTTAAAAGAATTAAAATACTTT GTAATGTCCTGGGCTTTGGGAAATGTTAACCACGTCCTAACTTCTAGAGAACGTTACTAAAATATAACATACTGATTGTGAAGTCAATCC ACAGGTCATGAAAATATAAATCAGACTCTGCACGAGAGTCTGATTTAGGGGGTCCAACAAATACTCTGACAGATGCAAAAGGAACCTCTG GTCTCATTTCTGCCAGAATCCTCTTTTCTCCCCTAATATCATCCTTATTCTGATGCTCGTTCATCACTAACACACCCACAGAAAGGAGGA AGCGGGATGGGTCTTATGCCCAAGGATTTGCACTTTGTGTTTACTTCCATTCCTGGGAACTAAAAGCAACATCAAAAGAAATGCCTAATG >86669_86669_7_SS18L1-JAM2_SS18L1_chr20_60740570_ENST00000370848_JAM2_chr21_27056195_ENST00000425221_length(amino acids)=548AA_BP=308 MQSLSTEARYVPRVPQHRDQISPRSPQHGGQICPRSPLHRGQICPRSPPARRYQQILHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGP GALTQSGSSQGLHSQGSLSDAISTGLPPSSLLQGQIGNGPSHVSMQQTAPNTLPTTSMSISGPGYSHAGPASQGVPMQGQGTIGNYVSRT NINMQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSMMGQRPMAPYRPSQQGSSQQYLGQEEYYGEQYSHSQGAAEPM GQQYYPDGHGDYAYQQSSYTEQSYDRSFEESTQHYYEGDHKAYGFSAPKDQQVVTAVEYQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCE VSAPSEQGQNLEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIRLLENPRLGSQSTNSSYTMNTKTGTLQ FNTVSKLDTGEYSCEARNSVGYRRCPGKRMQVDDLNISGIIAAVVVVALVISVCGLGVCYAQRKGYFSKETSFQKSNSSSKATTMSENDF -------------------------------------------------------------- >86669_86669_8_SS18L1-JAM2_SS18L1_chr20_60740570_ENST00000370848_JAM2_chr21_27056195_ENST00000480456_length(transcript)=4645nt_BP=925nt ATGCAGAGTCTAAGCACAGAGGCCAGATACGTCCCAAGAGTCCCCCAGCACAGAGATCAGATAAGTCCCAGGAGTCCCCAGCACGGAGGC CAGATATGTCCCAGGAGTCCCCTGCACAGAGGCCAGATATGTCCCAGGAGTCCCCCAGCACGGAGGTACCAGCAGATCCTGCACCGGAAC CTGGTATACCTGGCCACGATCGCAGACTCCAACCAGAACATGCAGTCCCTGCTTCCTGCCCCGCCCACGCAGAACATGAACCTGGGCCCT GGAGCCCTGACTCAGAGCGGCTCCAGCCAGGGCCTGCACTCTCAGGGCAGCCTGAGTGACGCCATCAGCACGGGCCTGCCACCCTCCTCC CTCCTGCAGGGCCAGATTGGCAACGGGCCGAGCCACGTGTCCATGCAGCAGACGGCGCCTAACACGCTGCCCACCACCTCCATGAGCATC TCTGGGCCCGGCTACAGCCACGCGGGACCCGCCTCGCAGGGCGTCCCCATGCAGGGGCAAGGCACCATCGGCAACTACGTGTCTCGGACC AACATCAACATGCAGTCCAACCCAGTCTCCATGATGCAGCAGCAGGCGGCCACGTCGCACTACAGCTCGGCGCAGGGCGGCAGCCAGCAC TACCAGGGCCAGTCGTCCATCGCCATGATGGGGCAGGGCAGCCAGGGGAGCAGCATGATGGGGCAGCGGCCCATGGCGCCCTACCGGCCC TCCCAGCAAGGCTCTTCCCAGCAGTACCTGGGCCAGGAGGAGTACTATGGCGAGCAGTACAGCCACAGCCAGGGCGCCGCGGAGCCCATG GGCCAGCAGTACTACCCCGACGGCCATGGCGATTACGCCTACCAGCAGTCATCCTACACGGAGCAGAGCTACGACCGGTCCTTCGAGGAG TCCACGCAGCACTACTATGAGGGGGATCATAAGGCCTATGGGTTTTCTGCCCCAAAAGACCAACAAGTAGTCACAGCAGTAGAGTACCAA GAGGCTATTTTAGCCTGCAAAACCCCAAAGAAGACTGTTTCCTCCAGATTAGAGTGGAAGAAACTGGGTCGGAGTGTCTCCTTTGTCTAC TATCAACAGACTCTTCAAGGTGATTTTAAAAATCGAGCTGAGATGATAGATTTCAATATCCGGATCAAAAATGTGACAAGAAGTGATGCG GGGAAATATCGTTGTGAAGTTAGTGCCCCATCTGAGCAAGGCCAAAACCTGGAAGAGGATACAGTCACTCTGGAAGTATTAGTGGCTCCA GCAGTTCCATCATGTGAAGTACCCTCTTCTGCTCTGAGTGGAACTGTGGTAGAGCTACGATGTCAAGACAAAGAAGGGAATCCAGCTCCT GAATACACATGGTTTAAGGATGGCATCCGTTTGCTAGAAAATCCCAGACTTGGCTCCCAAAGCACCAACAGCTCATACACAATGAATACA AAAACTGGAACTCTGCAATTTAATACTGTTTCCAAACTGGACACTGGAGAATATTCCTGTGAAGCCCGCAATTCTGTTGGATATCGCAGG TGTCCTGGGAAACGAATGCAAGTAGATGATCTCAACATAAGTGGCATCATAGCAGCCGTAGTAGTTGTGGCCTTAGTGATTTCCGTTTGT GGCCTTGGTGTATGCTATGCTCAGAGGAAAGGCTACTTTTCAAAAGAAACCTCCTTCCAGAAGAGTAATTCTTCATCTAAAGCCACGACA ATGAGTGAAAATGATTTCAAGCACACAAAATCCTTTATAATTTAAAGACTCCACTTTAGAGATACACCAAAGCCACCGTTGTTACACAAG TTATTAAACTATTATAAAACTCTGCTTTGTCCGACATTTGCAAAGAGGTACACGAGGAAATGGAATTGGTATTTCATTTTAATTTTCATG ACTACTAACTCACCTGAACTTGCTATTTTAAACAAATAGTTCTGTCGACACCTAAAATATAATCTGGCTTCTTGTGTCTGGACTAAGTTA AAAGAATTAAAATACTTTGTAATGTCCTGGGCTTTGGGAAATGTTAACCACGTCCTAACTTCTAGAGAACGTTACTAAAATATAACATAC TGATTGTGAAGTCAATCCACAGGTCATGAAAATATAAATCAGACTCTGCACGAGAGTCTGATTTAGGGGGTCCAACAAATACTCTGACAG ATGCAAAAGGAACCTCTGGTCTCATTTCTGCCAGAATCCTCTTTTCTCCCCTAATATCATCCTTATTCTGATGCTCGTTCATCACTAACA CACCCACAGAAAGGAGGAAGCGGGATGGGTCTTATGCCCAAGGATTTGCACTTTGTGTTTACTTCCATTCCTGGGAACTAAAAGCAACAT CAAAAGAAATGCCTAATGGCTGGAGCCCACAGGTGTGCACCACAGGATTTGCCTGGTGTGTGTCACTGATTTCTTCATTAAACGTAATTT AGATGGTCAAACACAAACCCAAGTGGCTTATTTCACCCCTACTGCTGCTTGCCACTGCTTCCTTCTTGTAAGATTTCTTTGAAGAGGATC AGTGACTTTGACATCAGAACTCACCACTGGAGCCTACACAAGTTTGCAGATACCTTTCCCTGCAGGAGTGGTGACTTCACATCTTTCTGT CTCTAAAAATTGTGCAGTGACATTCCGGGCCAAGTCCCTTAGTCAGGGGTTGACAATTCTGCTTTTGGACAAGGAGGGATGTGGAGGGAA GAAGTAATAGTCTACCAGGAAAATGAGACGAAAAAGCTCAGTATGACTCCCTGCATCTGGTACCCCTCTTGAAACACAGTGGGCACATGA GCAATGGCTCAAACGAAAAGTGGATCTAATGTGGGTTTCTCAACCGATGAACCACAAAAGCTTCCAGCTACTATTACAATGTGAAAATTC CAATGATCCGTTTACCAGAGCAATTAGACTATGTTAAAAATTCATATCATTTGTAACTTCTTTTAATTACTGAATTGATATTAAAAACAA AATATGGCTAGGGCATGTCCTATTCTTCTGGGCAAATGTGGATGAAAAGGTCACTTGCTACCTTTGACAACTATGAACATGATGGTTAAT CTTCTTTCTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCACTCTGTCGCCCAGGCTGGAGTACAGTGGCACAATCTTGGCTCACTGCAA CCTCCGCCTCCCCTCCGCCTCCCAGATTCAAGCACTTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGATTATAGGCGTGTACCACCACACC TGGCTAATTTTTGTATTTTAGTAGAGAAGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACCTCTGACCTCAAATGATCCACCCCCATC AGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACTGCACTGGGCAGGTTAATCTTCTTTCAAAAGAGTCTGCTCTTTCTACCCAATT GGCGAAGCAAATCCCCAGGATTCACCGAACAAATGGATTAAGCACCCACTGAGTGCCTAGCATGTGCCTGGACACCAGGCCACCGGGAAG ATGCTCCCCCTTTGACTTGTCTATGACATGCTATGTCTCTCACCAGATCCCTTCCTGGAGGTCGGGCTTCTGTAACATGGCTCTGCCCCC AAAATAAAATTTTCACCACGAGTCAGGGATCGGCAAACATTTTCTGTAAAGAGCCAGAAAGTAGATATTTTAAGTCATAAGGTCCCTGTT AACAACTACTTGACTCTGCCATTGTAGCACAAAGGCAGCCACAGACAAAACAAGCAAGTAGTCATGTCTGTGTTCCAATAAGACTTTATT TACAAAAACAGCAGGCACAGACAAGATTTGGCCCACAGGCATAGATTCCCAACTCATGGTGGTGAAGTACAGAAAAAAACACCTGTCTAC AAGCTTTTGTAAGAAATCAGGCTAAATGTTACCTATGTTTTGGTTGGAAGATTTCTTTGGTTTGAGGAATGCTTTCCTCTTGCATTGGCA TGCCAAGAGGATAGATGACTCTGAAAGACGCCTCTTCAGACATACCTGTCATCACACAAGATCAACTTCTTCAGTTTAAATGACACAAAT CCATATTGTGGAAGGAAAATATGTAGTGCCTTAGCTTCACTAATAGTTGTAAAACTTCTTTTTAAGACATCAAAGGCTAGAGGATTCATT TTATGCAGTGCGAACATCTAATAACACTCTCTGTGTCAAATATATATTGTACATTACCTTAAACTATTGTAATAGCTAGGTAAAAATCCT TGTATAAAAGAATGTTTTCCCCCACACAAAGGGCAGAGTATTGAGCACTAATTTCCTATTAAAAGTATATATATGTATCTGTGGGTCACT GGTGTCCAGACTTGTATTTGCATTTGTGTTTACTTGAGGAACTTGAACACTAACAACTGGTAAAATCCCATTGTAATTCTTACAGCATTT TGACTTTATTTTCCTGCAGTGAATTGTGTTGTGTAAAGATTAGGGCTTTAAAATCTTATTAGCAAGCTTTGTTTTGTTTTAATTATTGTT GCTGTTGTAACTAGATTTAATTTATTTTTAGTTGGAGGTTTGACCTAAGTCTGGACCAATTGATTGCTTTTCAATACAACTTTGCAAAGA >86669_86669_8_SS18L1-JAM2_SS18L1_chr20_60740570_ENST00000370848_JAM2_chr21_27056195_ENST00000480456_length(amino acids)=584AA_BP=308 MQSLSTEARYVPRVPQHRDQISPRSPQHGGQICPRSPLHRGQICPRSPPARRYQQILHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGP GALTQSGSSQGLHSQGSLSDAISTGLPPSSLLQGQIGNGPSHVSMQQTAPNTLPTTSMSISGPGYSHAGPASQGVPMQGQGTIGNYVSRT NINMQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSMMGQRPMAPYRPSQQGSSQQYLGQEEYYGEQYSHSQGAAEPM GQQYYPDGHGDYAYQQSSYTEQSYDRSFEESTQHYYEGDHKAYGFSAPKDQQVVTAVEYQEAILACKTPKKTVSSRLEWKKLGRSVSFVY YQQTLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQNLEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAP EYTWFKDGIRLLENPRLGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGKRMQVDDLNISGIIAAVVVVALVISVC -------------------------------------------------------------- >86669_86669_9_SS18L1-JAM2_SS18L1_chr20_60740570_ENST00000421564_JAM2_chr21_27056195_ENST00000312957_length(transcript)=2052nt_BP=971nt AGCGCAGCCGGAGTATCCACCTCGATGACCACGGGCTGAGCCCCGCGCCGCCACCATGTCCGTGGCCTTCGCGTCTGCCCGGCCAAGAGG CAAAGGGGAGGTTACGCAGCAAACCATCCAGAAGATGCTGGACGAGAACCACCACCTGATCCAGTGCATCCTGGAGTACCAGAGCAAGGG CAAGACGGCCGAGTGCACGCAGTACCAGCAGATCCTGCACCGGAACCTGGTATACCTGGCCACGATCGCAGACTCCAACCAGAACATGCA GTCCCTGCTTCCTGCCCCGCCCACGCAGAACATGAACCTGGGCCCTGGAGCCCTGACTCAGAGCGGCTCCAGCCAGGGCCTGCACTCTCA GGGCAGCCTGAGTGACGCCATCAGCACGGGCCTGCCACCCTCCTCCCTCCTGCAGGGCCAGATTGGCAACGGGCCGAGCCACGTGTCCAT GCAGCAGACGGCGCCTAACACGCTGCCCACCACCTCCATGAGCATCTCTGGGCCCGGCTACAGCCACGCGGGACCCGCCTCGCAGGGCGT CCCCATGCAGGGGCAAGGCACCATCGGCAACTACGTGTCTCGGACCAACATCAACATGCAGTCCAACCCAGTCTCCATGATGCAGCAGCA GGCGGCCACGTCGCACTACAGCTCGGCGCAGGGCGGCAGCCAGCACTACCAGGGCCAGTCGTCCATCGCCATGATGGGGCAGGGCAGCCA GGGGAGCAGCATGATGGGGCAGCGGCCCATGGCGCCCTACCGGCCCTCCCAGCAAGGCTCTTCCCAGCAGTACCTGGGCCAGGAGGAGTA CTATGGCGAGCAGTACAGCCACAGCCAGGGCGCCGCGGAGCCCATGGGCCAGCAGTACTACCCCGACGGCCATGGCGATTACGCCTACCA GCAGTCATCCTACACGGAGCAGAGCTACGACCGGTCCTTCGAGGAGTCCACGCAGCACTACTATGAGGGGGATCATAAGGCCTATGGGTT TTCTGCCCCAAAAGACCAACAAGTAGTCACAGCAGTAGAGTACCAAGAGGCTATTTTAGCCTGCAAAACCCCAAAGAAGACTGTTTCCTC CAGATTAGAGTGGAAGAAACTGGGTCGGAGTGTCTCCTTTGTCTACTATCAACAGACTCTTCAAGGTGATTTTAAAAATCGAGCTGAGAT GATAGATTTCAATATCCGGATCAAAAATGTGACAAGAAGTGATGCGGGGAAATATCGTTGTGAAGTTAGTGCCCCATCTGAGCAAGGCCA AAACCTGGAAGAGGATACAGTCACTCTGGAAGTATTAGTGGCTCCAGCAGTTCCATCATGTGAAGTACCCTCTTCTGCTCTGAGTGGAAC TGTGGTAGAGCTACGATGTCAAGACAAAGAAGGGAATCCAGCTCCTGAATACACATGGTTTAAGGATGGCATCCGTTTGCTAGAAAATCC CAGACTTGGCTCCCAAAGCACCAACAGCTCATACACAATGAATACAAAAACTGGAACTCTGCAATTTAATACTGTTTCCAAACTGGACAC TGGAGAATATTCCTGTGAAGCCCGCAATTCTGTTGGATATCGCAGGTGTCCTGGGAAACGAATGCAAGTAGATGATCTCAACATAAGTGG CATCATAGCAGCCGTAGTAGTTGTGGCCTTAGTGATTTCCGTTTGTGGCCTTGGTGTATGCTATGCTCAGAGGAAAGGCTACTTTTCAAG TAAATATATGTTCATGAAGAGTAATTCTTCATCTAAAGCCACGACAATGAGTGAAAATGATTTCAAGCACACAAAATCCTTTATAATTTA AAGACTCCACTTTAGAGATACACCAAAGCCACCGTTGTTACACAAGTTATTAAACTATTATAAAACTCTGCTTTGTCCGACATTTGCAAA GAGGTACACGAGGAAATGGAATTGGTATTTCATTTTAATTTTCATGACTACTAACTCACCTGAACTTGCTATTTTAAACAAATAGTTCTG >86669_86669_9_SS18L1-JAM2_SS18L1_chr20_60740570_ENST00000421564_JAM2_chr21_27056195_ENST00000312957_length(amino acids)=581AA_BP=305 MSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQILHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGAL TQSGSSQGLHSQGSLSDAISTGLPPSSLLQGQIGNGPSHVSMQQTAPNTLPTTSMSISGPGYSHAGPASQGVPMQGQGTIGNYVSRTNIN MQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSMMGQRPMAPYRPSQQGSSQQYLGQEEYYGEQYSHSQGAAEPMGQQ YYPDGHGDYAYQQSSYTEQSYDRSFEESTQHYYEGDHKAYGFSAPKDQQVVTAVEYQEAILACKTPKKTVSSRLEWKKLGRSVSFVYYQQ TLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQNLEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYT WFKDGIRLLENPRLGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGKRMQVDDLNISGIIAAVVVVALVISVCGLG -------------------------------------------------------------- >86669_86669_10_SS18L1-JAM2_SS18L1_chr20_60740570_ENST00000421564_JAM2_chr21_27056195_ENST00000400532_length(transcript)=2111nt_BP=971nt AGCGCAGCCGGAGTATCCACCTCGATGACCACGGGCTGAGCCCCGCGCCGCCACCATGTCCGTGGCCTTCGCGTCTGCCCGGCCAAGAGG CAAAGGGGAGGTTACGCAGCAAACCATCCAGAAGATGCTGGACGAGAACCACCACCTGATCCAGTGCATCCTGGAGTACCAGAGCAAGGG CAAGACGGCCGAGTGCACGCAGTACCAGCAGATCCTGCACCGGAACCTGGTATACCTGGCCACGATCGCAGACTCCAACCAGAACATGCA GTCCCTGCTTCCTGCCCCGCCCACGCAGAACATGAACCTGGGCCCTGGAGCCCTGACTCAGAGCGGCTCCAGCCAGGGCCTGCACTCTCA GGGCAGCCTGAGTGACGCCATCAGCACGGGCCTGCCACCCTCCTCCCTCCTGCAGGGCCAGATTGGCAACGGGCCGAGCCACGTGTCCAT GCAGCAGACGGCGCCTAACACGCTGCCCACCACCTCCATGAGCATCTCTGGGCCCGGCTACAGCCACGCGGGACCCGCCTCGCAGGGCGT CCCCATGCAGGGGCAAGGCACCATCGGCAACTACGTGTCTCGGACCAACATCAACATGCAGTCCAACCCAGTCTCCATGATGCAGCAGCA GGCGGCCACGTCGCACTACAGCTCGGCGCAGGGCGGCAGCCAGCACTACCAGGGCCAGTCGTCCATCGCCATGATGGGGCAGGGCAGCCA GGGGAGCAGCATGATGGGGCAGCGGCCCATGGCGCCCTACCGGCCCTCCCAGCAAGGCTCTTCCCAGCAGTACCTGGGCCAGGAGGAGTA CTATGGCGAGCAGTACAGCCACAGCCAGGGCGCCGCGGAGCCCATGGGCCAGCAGTACTACCCCGACGGCCATGGCGATTACGCCTACCA GCAGTCATCCTACACGGAGCAGAGCTACGACCGGTCCTTCGAGGAGTCCACGCAGCACTACTATGAGGGGGATCATAAGGCCTATGGGTT TTCTGCCCCAAAAGACCAACAAGTAGTCACAGCAGTAGAGTACCAAGAGGCTATTTTAGCCTGCAAAACCCCAAAGAAGACTGTTTCCTC CAGATTAGAGTGGAAGAAACTGGGTCGGAGTGTCTCCTTTGTCTACTATCAACAGACTCTTCAAGGTGATTTTAAAAATCGAGCTGAGAT GATAGATTTCAATATCCGGATCAAAAATGTGACAAGAAGTGATGCGGGGAAATATCGTTGTGAAGTTAGTGCCCCATCTGAGCAAGGCCA AAACCTGGAAGAGGATACAGTCACTCTGGAAGTATTAGTGGCTCCAGCAGTTCCATCATGTGAAGTACCCTCTTCTGCTCTGAGTGGAAC TGTGGTAGAGCTACGATGTCAAGACAAAGAAGGGAATCCAGCTCCTGAATACACATGGTTTAAGGATGGCATCCGTTTGCTAGAAAATCC CAGACTTGGCTCCCAAAGCACCAACAGCTCATACACAATGAATACAAAAACTGGAACTCTGCAATTTAATACTGTTTCCAAACTGGACAC TGGAGAATATTCCTGTGAAGCCCGCAATTCTGTTGGATATCGCAGGTGTCCTGGGAAACGAATGCAAGTAGATGATCTCAACATAAGTGG CATCATAGCAGCCGTAGTAGTTGTGGCCTTAGTGATTTCCGTTTGTGGCCTTGGTGTATGCTATGCTCAGAGGAAAGGCTACTTTTCAAA AGAAACCTCCTTCCAGAAGAGTAATTCTTCATCTAAAGCCACGACAATGAGTGAAAATGTGCAGTGGCTCACGCCTGTAATCCCAGCACT TTGGAAGGCCGCGGCGGGCGGATCACGAGGTCAGGAGTTCTAGACCAGTCTGGCCAATATGGTGAAACCCCATCTCTACTAAAATACAAA AATTAGCTGGGCATGGTGGCATGTGCCTGCAGTTCCAGCTGCTTGGGAGACAGGAGAATCACTTGAACCCGGGAGGCGGAGGTTGCAGTG AGCTGAGATCACGCCACTGCAGTCCAGCCTGGGTAACAGAGCAAGATTCCATCTCAAAAAATAAAATAAATAAATAAATAAATACTGGTT >86669_86669_10_SS18L1-JAM2_SS18L1_chr20_60740570_ENST00000421564_JAM2_chr21_27056195_ENST00000400532_length(amino acids)=595AA_BP=305 MSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQILHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGAL TQSGSSQGLHSQGSLSDAISTGLPPSSLLQGQIGNGPSHVSMQQTAPNTLPTTSMSISGPGYSHAGPASQGVPMQGQGTIGNYVSRTNIN MQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSMMGQRPMAPYRPSQQGSSQQYLGQEEYYGEQYSHSQGAAEPMGQQ YYPDGHGDYAYQQSSYTEQSYDRSFEESTQHYYEGDHKAYGFSAPKDQQVVTAVEYQEAILACKTPKKTVSSRLEWKKLGRSVSFVYYQQ TLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQNLEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYT WFKDGIRLLENPRLGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGKRMQVDDLNISGIIAAVVVVALVISVCGLG -------------------------------------------------------------- >86669_86669_11_SS18L1-JAM2_SS18L1_chr20_60740570_ENST00000421564_JAM2_chr21_27056195_ENST00000425221_length(transcript)=2357nt_BP=971nt AGCGCAGCCGGAGTATCCACCTCGATGACCACGGGCTGAGCCCCGCGCCGCCACCATGTCCGTGGCCTTCGCGTCTGCCCGGCCAAGAGG CAAAGGGGAGGTTACGCAGCAAACCATCCAGAAGATGCTGGACGAGAACCACCACCTGATCCAGTGCATCCTGGAGTACCAGAGCAAGGG CAAGACGGCCGAGTGCACGCAGTACCAGCAGATCCTGCACCGGAACCTGGTATACCTGGCCACGATCGCAGACTCCAACCAGAACATGCA GTCCCTGCTTCCTGCCCCGCCCACGCAGAACATGAACCTGGGCCCTGGAGCCCTGACTCAGAGCGGCTCCAGCCAGGGCCTGCACTCTCA GGGCAGCCTGAGTGACGCCATCAGCACGGGCCTGCCACCCTCCTCCCTCCTGCAGGGCCAGATTGGCAACGGGCCGAGCCACGTGTCCAT GCAGCAGACGGCGCCTAACACGCTGCCCACCACCTCCATGAGCATCTCTGGGCCCGGCTACAGCCACGCGGGACCCGCCTCGCAGGGCGT CCCCATGCAGGGGCAAGGCACCATCGGCAACTACGTGTCTCGGACCAACATCAACATGCAGTCCAACCCAGTCTCCATGATGCAGCAGCA GGCGGCCACGTCGCACTACAGCTCGGCGCAGGGCGGCAGCCAGCACTACCAGGGCCAGTCGTCCATCGCCATGATGGGGCAGGGCAGCCA GGGGAGCAGCATGATGGGGCAGCGGCCCATGGCGCCCTACCGGCCCTCCCAGCAAGGCTCTTCCCAGCAGTACCTGGGCCAGGAGGAGTA CTATGGCGAGCAGTACAGCCACAGCCAGGGCGCCGCGGAGCCCATGGGCCAGCAGTACTACCCCGACGGCCATGGCGATTACGCCTACCA GCAGTCATCCTACACGGAGCAGAGCTACGACCGGTCCTTCGAGGAGTCCACGCAGCACTACTATGAGGGGGATCATAAGGCCTATGGGTT TTCTGCCCCAAAAGACCAACAAGTAGTCACAGCAGTAGAGTACCAAGGTGATTTTAAAAATCGAGCTGAGATGATAGATTTCAATATCCG GATCAAAAATGTGACAAGAAGTGATGCGGGGAAATATCGTTGTGAAGTTAGTGCCCCATCTGAGCAAGGCCAAAACCTGGAAGAGGATAC AGTCACTCTGGAAGTATTAGTGGCTCCAGCAGTTCCATCATGTGAAGTACCCTCTTCTGCTCTGAGTGGAACTGTGGTAGAGCTACGATG TCAAGACAAAGAAGGGAATCCAGCTCCTGAATACACATGGTTTAAGGATGGCATCCGTTTGCTAGAAAATCCCAGACTTGGCTCCCAAAG CACCAACAGCTCATACACAATGAATACAAAAACTGGAACTCTGCAATTTAATACTGTTTCCAAACTGGACACTGGAGAATATTCCTGTGA AGCCCGCAATTCTGTTGGATATCGCAGGTGTCCTGGGAAACGAATGCAAGTAGATGATCTCAACATAAGTGGCATCATAGCAGCCGTAGT AGTTGTGGCCTTAGTGATTTCCGTTTGTGGCCTTGGTGTATGCTATGCTCAGAGGAAAGGCTACTTTTCAAAAGAAACCTCCTTCCAGAA GAGTAATTCTTCATCTAAAGCCACGACAATGAGTGAAAATGATTTCAAGCACACAAAATCCTTTATAATTTAAAGACTCCACTTTAGAGA TACACCAAAGCCACCGTTGTTACACAAGTTATTAAACTATTATAAAACTCTGCTTTGTCCGACATTTGCAAAGAGGTACACGAGGAAATG GAATTGGTATTTCATTTTAATTTTCATGACTACTAACTCACCTGAACTTGCTATTTTAAACAAATAGTTCTGTCGACACCTAAAATATAA TCTGGCTTCTTGTGTCTGGACTAAGTTAAAAGAATTAAAATACTTTGTAATGTCCTGGGCTTTGGGAAATGTTAACCACGTCCTAACTTC TAGAGAACGTTACTAAAATATAACATACTGATTGTGAAGTCAATCCACAGGTCATGAAAATATAAATCAGACTCTGCACGAGAGTCTGAT TTAGGGGGTCCAACAAATACTCTGACAGATGCAAAAGGAACCTCTGGTCTCATTTCTGCCAGAATCCTCTTTTCTCCCCTAATATCATCC TTATTCTGATGCTCGTTCATCACTAACACACCCACAGAAAGGAGGAAGCGGGATGGGTCTTATGCCCAAGGATTTGCACTTTGTGTTTAC TTCCATTCCTGGGAACTAAAAGCAACATCAAAAGAAATGCCTAATGGCTGGAGCCCACAGGTGTGCACCACAGGATTTGCCTGGTGTGTG >86669_86669_11_SS18L1-JAM2_SS18L1_chr20_60740570_ENST00000421564_JAM2_chr21_27056195_ENST00000425221_length(amino acids)=545AA_BP=305 MSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQILHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGAL TQSGSSQGLHSQGSLSDAISTGLPPSSLLQGQIGNGPSHVSMQQTAPNTLPTTSMSISGPGYSHAGPASQGVPMQGQGTIGNYVSRTNIN MQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSMMGQRPMAPYRPSQQGSSQQYLGQEEYYGEQYSHSQGAAEPMGQQ YYPDGHGDYAYQQSSYTEQSYDRSFEESTQHYYEGDHKAYGFSAPKDQQVVTAVEYQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSA PSEQGQNLEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIRLLENPRLGSQSTNSSYTMNTKTGTLQFNT VSKLDTGEYSCEARNSVGYRRCPGKRMQVDDLNISGIIAAVVVVALVISVCGLGVCYAQRKGYFSKETSFQKSNSSSKATTMSENDFKHT -------------------------------------------------------------- >86669_86669_12_SS18L1-JAM2_SS18L1_chr20_60740570_ENST00000421564_JAM2_chr21_27056195_ENST00000480456_length(transcript)=4691nt_BP=971nt AGCGCAGCCGGAGTATCCACCTCGATGACCACGGGCTGAGCCCCGCGCCGCCACCATGTCCGTGGCCTTCGCGTCTGCCCGGCCAAGAGG CAAAGGGGAGGTTACGCAGCAAACCATCCAGAAGATGCTGGACGAGAACCACCACCTGATCCAGTGCATCCTGGAGTACCAGAGCAAGGG CAAGACGGCCGAGTGCACGCAGTACCAGCAGATCCTGCACCGGAACCTGGTATACCTGGCCACGATCGCAGACTCCAACCAGAACATGCA GTCCCTGCTTCCTGCCCCGCCCACGCAGAACATGAACCTGGGCCCTGGAGCCCTGACTCAGAGCGGCTCCAGCCAGGGCCTGCACTCTCA GGGCAGCCTGAGTGACGCCATCAGCACGGGCCTGCCACCCTCCTCCCTCCTGCAGGGCCAGATTGGCAACGGGCCGAGCCACGTGTCCAT GCAGCAGACGGCGCCTAACACGCTGCCCACCACCTCCATGAGCATCTCTGGGCCCGGCTACAGCCACGCGGGACCCGCCTCGCAGGGCGT CCCCATGCAGGGGCAAGGCACCATCGGCAACTACGTGTCTCGGACCAACATCAACATGCAGTCCAACCCAGTCTCCATGATGCAGCAGCA GGCGGCCACGTCGCACTACAGCTCGGCGCAGGGCGGCAGCCAGCACTACCAGGGCCAGTCGTCCATCGCCATGATGGGGCAGGGCAGCCA GGGGAGCAGCATGATGGGGCAGCGGCCCATGGCGCCCTACCGGCCCTCCCAGCAAGGCTCTTCCCAGCAGTACCTGGGCCAGGAGGAGTA CTATGGCGAGCAGTACAGCCACAGCCAGGGCGCCGCGGAGCCCATGGGCCAGCAGTACTACCCCGACGGCCATGGCGATTACGCCTACCA GCAGTCATCCTACACGGAGCAGAGCTACGACCGGTCCTTCGAGGAGTCCACGCAGCACTACTATGAGGGGGATCATAAGGCCTATGGGTT TTCTGCCCCAAAAGACCAACAAGTAGTCACAGCAGTAGAGTACCAAGAGGCTATTTTAGCCTGCAAAACCCCAAAGAAGACTGTTTCCTC CAGATTAGAGTGGAAGAAACTGGGTCGGAGTGTCTCCTTTGTCTACTATCAACAGACTCTTCAAGGTGATTTTAAAAATCGAGCTGAGAT GATAGATTTCAATATCCGGATCAAAAATGTGACAAGAAGTGATGCGGGGAAATATCGTTGTGAAGTTAGTGCCCCATCTGAGCAAGGCCA AAACCTGGAAGAGGATACAGTCACTCTGGAAGTATTAGTGGCTCCAGCAGTTCCATCATGTGAAGTACCCTCTTCTGCTCTGAGTGGAAC TGTGGTAGAGCTACGATGTCAAGACAAAGAAGGGAATCCAGCTCCTGAATACACATGGTTTAAGGATGGCATCCGTTTGCTAGAAAATCC CAGACTTGGCTCCCAAAGCACCAACAGCTCATACACAATGAATACAAAAACTGGAACTCTGCAATTTAATACTGTTTCCAAACTGGACAC TGGAGAATATTCCTGTGAAGCCCGCAATTCTGTTGGATATCGCAGGTGTCCTGGGAAACGAATGCAAGTAGATGATCTCAACATAAGTGG CATCATAGCAGCCGTAGTAGTTGTGGCCTTAGTGATTTCCGTTTGTGGCCTTGGTGTATGCTATGCTCAGAGGAAAGGCTACTTTTCAAA AGAAACCTCCTTCCAGAAGAGTAATTCTTCATCTAAAGCCACGACAATGAGTGAAAATGATTTCAAGCACACAAAATCCTTTATAATTTA AAGACTCCACTTTAGAGATACACCAAAGCCACCGTTGTTACACAAGTTATTAAACTATTATAAAACTCTGCTTTGTCCGACATTTGCAAA GAGGTACACGAGGAAATGGAATTGGTATTTCATTTTAATTTTCATGACTACTAACTCACCTGAACTTGCTATTTTAAACAAATAGTTCTG TCGACACCTAAAATATAATCTGGCTTCTTGTGTCTGGACTAAGTTAAAAGAATTAAAATACTTTGTAATGTCCTGGGCTTTGGGAAATGT TAACCACGTCCTAACTTCTAGAGAACGTTACTAAAATATAACATACTGATTGTGAAGTCAATCCACAGGTCATGAAAATATAAATCAGAC TCTGCACGAGAGTCTGATTTAGGGGGTCCAACAAATACTCTGACAGATGCAAAAGGAACCTCTGGTCTCATTTCTGCCAGAATCCTCTTT TCTCCCCTAATATCATCCTTATTCTGATGCTCGTTCATCACTAACACACCCACAGAAAGGAGGAAGCGGGATGGGTCTTATGCCCAAGGA TTTGCACTTTGTGTTTACTTCCATTCCTGGGAACTAAAAGCAACATCAAAAGAAATGCCTAATGGCTGGAGCCCACAGGTGTGCACCACA GGATTTGCCTGGTGTGTGTCACTGATTTCTTCATTAAACGTAATTTAGATGGTCAAACACAAACCCAAGTGGCTTATTTCACCCCTACTG CTGCTTGCCACTGCTTCCTTCTTGTAAGATTTCTTTGAAGAGGATCAGTGACTTTGACATCAGAACTCACCACTGGAGCCTACACAAGTT TGCAGATACCTTTCCCTGCAGGAGTGGTGACTTCACATCTTTCTGTCTCTAAAAATTGTGCAGTGACATTCCGGGCCAAGTCCCTTAGTC AGGGGTTGACAATTCTGCTTTTGGACAAGGAGGGATGTGGAGGGAAGAAGTAATAGTCTACCAGGAAAATGAGACGAAAAAGCTCAGTAT GACTCCCTGCATCTGGTACCCCTCTTGAAACACAGTGGGCACATGAGCAATGGCTCAAACGAAAAGTGGATCTAATGTGGGTTTCTCAAC CGATGAACCACAAAAGCTTCCAGCTACTATTACAATGTGAAAATTCCAATGATCCGTTTACCAGAGCAATTAGACTATGTTAAAAATTCA TATCATTTGTAACTTCTTTTAATTACTGAATTGATATTAAAAACAAAATATGGCTAGGGCATGTCCTATTCTTCTGGGCAAATGTGGATG AAAAGGTCACTTGCTACCTTTGACAACTATGAACATGATGGTTAATCTTCTTTCTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCACTC TGTCGCCCAGGCTGGAGTACAGTGGCACAATCTTGGCTCACTGCAACCTCCGCCTCCCCTCCGCCTCCCAGATTCAAGCACTTCTCCTGC CTCAGCCTCCCAAGTAGCTGAGATTATAGGCGTGTACCACCACACCTGGCTAATTTTTGTATTTTAGTAGAGAAGGGTTTCACCATGTTG GCCAGGCTGGTCTCAAACCTCTGACCTCAAATGATCCACCCCCATCAGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACTGCACTG GGCAGGTTAATCTTCTTTCAAAAGAGTCTGCTCTTTCTACCCAATTGGCGAAGCAAATCCCCAGGATTCACCGAACAAATGGATTAAGCA CCCACTGAGTGCCTAGCATGTGCCTGGACACCAGGCCACCGGGAAGATGCTCCCCCTTTGACTTGTCTATGACATGCTATGTCTCTCACC AGATCCCTTCCTGGAGGTCGGGCTTCTGTAACATGGCTCTGCCCCCAAAATAAAATTTTCACCACGAGTCAGGGATCGGCAAACATTTTC TGTAAAGAGCCAGAAAGTAGATATTTTAAGTCATAAGGTCCCTGTTAACAACTACTTGACTCTGCCATTGTAGCACAAAGGCAGCCACAG ACAAAACAAGCAAGTAGTCATGTCTGTGTTCCAATAAGACTTTATTTACAAAAACAGCAGGCACAGACAAGATTTGGCCCACAGGCATAG ATTCCCAACTCATGGTGGTGAAGTACAGAAAAAAACACCTGTCTACAAGCTTTTGTAAGAAATCAGGCTAAATGTTACCTATGTTTTGGT TGGAAGATTTCTTTGGTTTGAGGAATGCTTTCCTCTTGCATTGGCATGCCAAGAGGATAGATGACTCTGAAAGACGCCTCTTCAGACATA CCTGTCATCACACAAGATCAACTTCTTCAGTTTAAATGACACAAATCCATATTGTGGAAGGAAAATATGTAGTGCCTTAGCTTCACTAAT AGTTGTAAAACTTCTTTTTAAGACATCAAAGGCTAGAGGATTCATTTTATGCAGTGCGAACATCTAATAACACTCTCTGTGTCAAATATA TATTGTACATTACCTTAAACTATTGTAATAGCTAGGTAAAAATCCTTGTATAAAAGAATGTTTTCCCCCACACAAAGGGCAGAGTATTGA GCACTAATTTCCTATTAAAAGTATATATATGTATCTGTGGGTCACTGGTGTCCAGACTTGTATTTGCATTTGTGTTTACTTGAGGAACTT GAACACTAACAACTGGTAAAATCCCATTGTAATTCTTACAGCATTTTGACTTTATTTTCCTGCAGTGAATTGTGTTGTGTAAAGATTAGG GCTTTAAAATCTTATTAGCAAGCTTTGTTTTGTTTTAATTATTGTTGCTGTTGTAACTAGATTTAATTTATTTTTAGTTGGAGGTTTGAC CTAAGTCTGGACCAATTGATTGCTTTTCAATACAACTTTGCAAAGAACTTCCTTTTTCCACAGGTGGCTTTGTTCGATTAAAGTCTACAC >86669_86669_12_SS18L1-JAM2_SS18L1_chr20_60740570_ENST00000421564_JAM2_chr21_27056195_ENST00000480456_length(amino acids)=581AA_BP=305 MSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQILHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGAL TQSGSSQGLHSQGSLSDAISTGLPPSSLLQGQIGNGPSHVSMQQTAPNTLPTTSMSISGPGYSHAGPASQGVPMQGQGTIGNYVSRTNIN MQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSMMGQRPMAPYRPSQQGSSQQYLGQEEYYGEQYSHSQGAAEPMGQQ YYPDGHGDYAYQQSSYTEQSYDRSFEESTQHYYEGDHKAYGFSAPKDQQVVTAVEYQEAILACKTPKKTVSSRLEWKKLGRSVSFVYYQQ TLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQNLEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYT WFKDGIRLLENPRLGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGKRMQVDDLNISGIIAAVVVVALVISVCGLG -------------------------------------------------------------- |
Top |
Fusion Gene PPI Analysis for SS18L1-JAM2 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
Related Drugs for SS18L1-JAM2 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
Related Diseases for SS18L1-JAM2 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | SS18L1 | C1862939 | AMYOTROPHIC LATERAL SCLEROSIS 1 | 1 | GENOMICS_ENGLAND |