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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene Breakpoints

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Tumorigenic MoA (Mechanism of Action) Scenarios of Fusion Geness

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Fusion Genomic Features

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Fusion Gene ORF Annotations

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Fusion Protein Retained/Non-Retained Functional Features

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Fusion Transcript Sequences

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Fusion Protein Sequences

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Personalized Fusion Protein Sequences

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Fusion Gene Expressed Samples

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Related Drugs

Fusion gene:DPM1_CDKN2A (FusionGDB2 ID:HG8813TG1029)

Fusion Gene Summary for DPM1_CDKN2A

check button Fusion gene summary
Fusion gene informationFusion gene name: DPM1_CDKN2A
Fusion gene ID: hg8813tg1029
HgeneTgene
Gene symbol

DPM1

CDKN2A

Gene ID

8813

1029

Gene namedolichyl-phosphate mannosyltransferase subunit 1, catalyticcyclin dependent kinase inhibitor 2A
SynonymsCDGIE|MPDSARF|CAI2|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16
Cytomap

20q13.13

9p21.3

Type of geneprotein-codingprotein-coding
Descriptiondolichol-phosphate mannosyltransferase subunit 1DPM synthase complex, catalytic subunitDPM synthase subunit 1MPD synthase subunit 1dolichol monophosphate mannose synthasedolichol-phosphate mannose synthase subunit 1dolichyl-phosphate beta-D-mannosylcyclin-dependent kinase inhibitor 2ACDK4 inhibitor p16-INK4CDKN2A/ARF Intron 2 lncRNAalternative reading framecell cycle negative regulator betacyclin-dependent kinase 4 inhibitor Acyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4)
Modification date2024040720240407
UniProtAcc

O60762

.
Ensembl transtripts involved in fusion geneENST00000371582, ENST00000371583, 
ENST00000371588, ENST00000466152, 
Fusion gene scores* DoF score* DoF score (Degree of Frequency) = # partners X # break points X # disease types
12 X 10 X 10=1200
* DoF score (Degree of Frequency) = # partners X # break points X # disease types
10 X 154 X 28=43120
# samples 40182
** MAII score** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)
log2(40/1200*10)=-1.58496250072116
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)
log2(182/43120*10)=-4.56634682255381
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: DPM1 [Title/Abstract] AND CDKN2A [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointDPM1(49574899)-CDKN2A(21968241), # samples:1


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Fusion Gene Breakpoints for DPM1_CDKN2A


check button RNA-seq based exon junction arranged fusion gene breakpoints from 8 resources (TCGA, CCLE, cBioPortal, GenBank, ChimerDB, ChimerKB, ChildHoodFusions, and GTEx). For the expressed sample information, go to Fusion Gene Sample section.
HgeneHchrHbpTgeneTchrTbp
DPM1chr2049574899CDKN2Achr921968241


check button DNA-seq based exon junction arranged fusion gene breakpoints from dbVar. For the expressed sample information, go to Fusion Gene Sample section.
HgeneHchrHbpTgeneTchrTbpSV type


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Tumorigenic MoA (Mechanism of Action) Scenarios of Fusion Genes for DPM1_CDKN2A


check button To generate these tumorigenic scenario annotations, we implemented a deduction-first, retrieval-later computational framework. The pipeline first applies rule-guided reasoning across ten core mechanistic categories (M1–M10) derived from fusion gene biology to infer candidate mechanisms, tumorigenic scenarios, targeting points, and targeting backgrounds. To ensure empirical accountability, a governed Python workflow retrieves literature candidates via NCBI E-utilities and Europe PMC using tiered searches. Using JSON Schema-constrained LLM evidence judges (GPT-5.6 Luna and Terra), retrieved articles are evaluated for specificity and confidence without de novo PMID generation. This produces two distinct versions: a strict version restricted to high- or medium-confidence fusion-specific evidence, and an extended version incorporating broader gene-, pathway-, and contextual evidence.
* We have 10 tumorigenic mechanism categories of fusion genes as shown below.
Constitutively Active Kinases, Catalytic Domain Dysregulation, & Transmembrane Ligand FusionsAberrant Chimeric Transcription Factor / Fusion Transcription Factor ActivityEpigenetic Reprogramming / Histone Modifier DysregulationChromatin Remodeling DysregulationCondensate-Driven Transcriptional Rewiring / LLPPromoter / Enhancer HijackingDominant-Negative AntagonismCell Cycle / Checkpoint Bypass / RNA Processing DysregulationSubcellular Mislocalization / Spatial DysregulationNuclear Body / Sub-organellar Architecture Disruption & Differentiation Blockade

* Strict version: Restricted to high- or medium-confidence fusion-specific evidence.
Fusion Gene NameMechanism CategoryMechanism PubMedTumorigenic ScenariosTumorigenic Scenario PubMedTargeting PointsTargeting PubMedMechanism BackgroundMechanism Background PubMed
DPM1-CDKN2A
Cell Cycle / Checkpoint Bypass / RNA Processing Dysregulation
M8
Disruption of CDKN2A (p16INK4a) disables G1/S cell cycle arrest while DPM1 dolichyl-phosphate mannosyltransferase alters ER N-glycosylation.CDK4/6 inhibitors (palbociclib); N-glycosylation inhibitorsCDKN2A-deleted melanomas and solid tumors

* Extended version: Includes all strict-level fusion evidence plus broader gene-, pathway-, and low-confidence contextual evidence.
Fusion Gene NameMechanism CategoryMechanism PubMedTumorigenic ScenariosTumorigenic Scenario PubMedTargeting PointsTargeting PubMedMechanism BackgroundMechanism Background PubMed
DPM1-CDKN2A
Cell Cycle / Checkpoint Bypass / RNA Processing Dysregulation
Disruption of CDKN2A (p16INK4a) disables G1/S cell cycle arrest while DPM1 dolichyl-phosphate mannosyltransferase alters ER N-glycosylation.CDK4/6 inhibitors (palbociclib); N-glycosylation inhibitorsCDKN2A-deleted melanomas and solid tumorsEvidence level: Limited indirect gene evidence; Confidence: Low; PMID: 41439984; Title: MTAP-Null Tumors: A Comprehensive Review on Synthetic Vulnerabilities and Therapeutic Strategies.; PMID: 40595559; Title: Genomic landscape of virus-associated cancers.

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
DPM1

O60762

.

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneDPM1

GO:0006506

GPI anchor biosynthetic process

9535917|9724629

HgeneDPM1

GO:0006506

GPI anchor biosynthetic process

9535917|10835346

HgeneDPM1

GO:0019348

dolichol metabolic process

9535917|9724629

HgeneDPM1

GO:0019348

dolichol metabolic process

10835346

HgeneDPM1

GO:0035268

protein mannosylation

9535917

HgeneDPM1

GO:0035269

protein O-linked mannosylation

9535917

TgeneCDKN2A

GO:0008285

negative regulation of cell population proliferation

15149599

TgeneCDKN2A

GO:0030308

negative regulation of cell growth

10208428

TgeneCDKN2A

GO:0032088

negative regulation of NF-kappaB transcription factor activity

10353611

TgeneCDKN2A

GO:0042326

negative regulation of phosphorylation

8259215|10208428

TgeneCDKN2A

GO:0045736

negative regulation of cyclin-dependent protein serine/threonine kinase activity

7739547

TgeneCDKN2A

GO:0045736

negative regulation of cyclin-dependent protein serine/threonine kinase activity

8259215

TgeneCDKN2A

GO:0051726

regulation of cell cycle

15149599

TgeneCDKN2A

GO:2000045

regulation of G1/S transition of mitotic cell cycle

10208428


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Fusion Genomic Features for DPM1_CDKN2A


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence) of In-frame fusion genes. FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
DPM1chr2049574899-CDKN2Achr921968241-5.59e-029.44e-01


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence) of 5UTR-3CSD fusion genes (N-truncated cases).
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence) of 5CDS-3UTR fusion genes (C-truncated cases).
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of six genomic regulatory feature tracks across a ±5 kb window centered on the fusion breakpoints. We input the breakpoint sequences into AlphaGenome and obtained predicted genome tracks at single-base-pair resolution for each modality by running a single forward pass over the reference sequence. Specifically, for each breakpoint, AlphaGenome processed and returned predicted track data across diverse modalities, which were then averaged across all tracks within each output type and visualized across the ±5 kb window. The left panel shows the 5'-gene breakpoint ±5 kb area, and the right panel shows the 3'-gene breakpoint area, with tracks grouped by category: chromatin accessibility (DNase-seq, ATAC-seq), active transcription (RNA-seq, CAGE), and chromatin binding (ChIP-Histone, ChIP-TF).
genomic feature

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Fusion Gene ORF Annotations for DPM1_CDKN2A

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-3UTRENST00000371582ENST00000304494DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5CDS-3UTRENST00000371582ENST00000361570DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5CDS-3UTRENST00000371582ENST00000494262DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5CDS-3UTRENST00000371582ENST00000498124DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5CDS-3UTRENST00000371582ENST00000498628DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5CDS-3UTRENST00000371582ENST00000530628DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5CDS-3UTRENST00000371582ENST00000578845DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5CDS-3UTRENST00000371582ENST00000579122DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5CDS-3UTRENST00000371582ENST00000579755DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5CDS-3UTRENST00000371583ENST00000304494DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5CDS-3UTRENST00000371583ENST00000361570DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5CDS-3UTRENST00000371583ENST00000494262DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5CDS-3UTRENST00000371583ENST00000498124DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5CDS-3UTRENST00000371583ENST00000498628DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5CDS-3UTRENST00000371583ENST00000530628DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5CDS-3UTRENST00000371583ENST00000578845DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5CDS-3UTRENST00000371583ENST00000579122DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5CDS-3UTRENST00000371583ENST00000579755DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5CDS-3UTRENST00000371588ENST00000304494DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5CDS-3UTRENST00000371588ENST00000361570DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5CDS-3UTRENST00000371588ENST00000494262DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5CDS-3UTRENST00000371588ENST00000498124DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5CDS-3UTRENST00000371588ENST00000498628DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5CDS-3UTRENST00000371588ENST00000530628DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5CDS-3UTRENST00000371588ENST00000578845DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5CDS-3UTRENST00000371588ENST00000579122DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5CDS-3UTRENST00000371588ENST00000579755DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5UTR-3UTRENST00000466152ENST00000304494DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5UTR-3UTRENST00000466152ENST00000361570DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5UTR-3UTRENST00000466152ENST00000494262DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5UTR-3UTRENST00000466152ENST00000498124DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5UTR-3UTRENST00000466152ENST00000498628DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5UTR-3UTRENST00000466152ENST00000530628DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5UTR-3UTRENST00000466152ENST00000578845DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5UTR-3UTRENST00000466152ENST00000579122DPM1chr20

49574899

-CDKN2Achr9

21968241

-
5UTR-3UTRENST00000466152ENST00000579755DPM1chr20

49574899

-CDKN2Achr9

21968241

-

check buttonORFfinder Result Based On The Fusion Transcript Sequences of the In-frame Fusion Genes.
HenstTenstHgeneHchrHbpTgeneTchrTbpSeq length
(transcript)
Seq length
(peptide)

check buttonORFfinder Result Based On The Fusion Transcript Sequences of the 5UTR-3CDS Fusion Genes for N-Truncated Protein Search.
HenstTenstHgeneHchrHbpTgeneTchrTbpSeq length
(transcript)
Seq length
(peptide)

check buttonORFfinder Result Based On The Fusion Transcript Sequences of the 5CDS-3UTR Fusion Genes for C-Truncated Protein Search.
HenstTenstHgeneHchrHbpTgeneTchrTbpSeq length
(transcript)
Seq length
(peptide)

check buttonDeepORF Prediction of The Coding Potential Based on The Fusion Transcript Sequence of In-frame Fusion Genes. DeepORF is a Coding Potential Classifier Based on Convolutional Neural Network by Comparing the Real Ribo-seq Data. If the No-coding Score < 0.5 and Coding Score > 0.5, Then The In-frame Fusion Transcript is Predicted as Being Likely Translated.
HenstTenstHgeneHchrHbpTgeneTchrTbpNo-coding scoreCoding score

check buttonDeepORF Prediction of The Coding Potential Based on The Fusion Transcript Sequence of 5UTR-3CDS Fusion Genes (Potential N-Truncated Proteins).
HenstTenstHgeneHchrHbpTgeneTchrTbpNo-coding scoreCoding score

check buttonDeepORF Prediction of The Coding Potential Based on The Fusion Transcript Sequence of 5CDS-3UTR Fusion Genes (Potential C-Truncated Proteins).
HenstTenstHgeneHchrHbpTgeneTchrTbpNo-coding scoreCoding score
ENST00000371583ENST00000498628DPM1chr2049574899CDKN2Achr9219682410.00e+001.74e-01
ENST00000371588ENST00000579755DPM1chr2049574899CDKN2Achr9219682410.00e+001.33e-01
ENST00000371588ENST00000579122DPM1chr2049574899CDKN2Achr9219682410.00e+004.96e-01
ENST00000371588ENST00000578845DPM1chr2049574899CDKN2Achr9219682410.00e+004.00e-01
ENST00000371588ENST00000530628DPM1chr2049574899CDKN2Achr9219682410.00e+001.33e-01
ENST00000371588ENST00000498628DPM1chr2049574899CDKN2Achr9219682410.00e+001.81e-01
ENST00000371588ENST00000498124DPM1chr2049574899CDKN2Achr9219682410.00e+001.33e-01
ENST00000371588ENST00000494262DPM1chr2049574899CDKN2Achr9219682410.00e+005.37e-02
ENST00000371588ENST00000361570DPM1chr2049574899CDKN2Achr9219682410.00e+001.33e-01
ENST00000371588ENST00000304494DPM1chr2049574899CDKN2Achr9219682410.00e+007.28e-01
ENST00000371583ENST00000579755DPM1chr2049574899CDKN2Achr9219682410.00e+001.31e-01
ENST00000371583ENST00000579122DPM1chr2049574899CDKN2Achr9219682410.00e+004.83e-01
ENST00000371583ENST00000578845DPM1chr2049574899CDKN2Achr9219682410.00e+003.85e-01
ENST00000371583ENST00000530628DPM1chr2049574899CDKN2Achr9219682410.00e+001.31e-01
ENST00000371582ENST00000304494DPM1chr2049574899CDKN2Achr9219682410.00e+007.24e-01
ENST00000371583ENST00000498124DPM1chr2049574899CDKN2Achr9219682410.00e+001.31e-01
ENST00000371583ENST00000494262DPM1chr2049574899CDKN2Achr9219682410.00e+005.39e-02
ENST00000371583ENST00000361570DPM1chr2049574899CDKN2Achr9219682410.00e+001.31e-01
ENST00000371583ENST00000304494DPM1chr2049574899CDKN2Achr9219682410.00e+006.90e-01
ENST00000371582ENST00000579755DPM1chr2049574899CDKN2Achr9219682410.00e+001.25e-01
ENST00000371582ENST00000579122DPM1chr2049574899CDKN2Achr9219682410.00e+004.75e-01
ENST00000371582ENST00000578845DPM1chr2049574899CDKN2Achr9219682410.00e+003.73e-01
ENST00000371582ENST00000530628DPM1chr2049574899CDKN2Achr9219682410.00e+001.25e-01
ENST00000371582ENST00000498628DPM1chr2049574899CDKN2Achr9219682410.00e+001.77e-01
ENST00000371582ENST00000498124DPM1chr2049574899CDKN2Achr9219682410.00e+001.25e-01
ENST00000371582ENST00000494262DPM1chr2049574899CDKN2Achr9219682410.00e+005.71e-02
ENST00000371582ENST00000361570DPM1chr2049574899CDKN2Achr9219682410.00e+001.25e-01

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Fusion Protein Retained/Non-Retained Functional Features for DPM1_CDKN2A

check buttonProtein Level Annotation from FGviewer
* Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at download page. Minus value of BPloci means that the break pointn is located before the CDS.
fgviewer annotation
- In-frame and retained protein feature among the 13 regional features (visualization across fusion protein length).
No matching images found for ${hg}_${tg}.

- In-frame and retained protein feature among the 13 regional features (texts).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


check button - Retained PPIs in in-frame fusion.
PartnerHgeneHbpTgeneTbpENSTUniProtStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerHgeneHbpTgeneTbpENSTUniProtStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Fusion Transcript Sequence for DPM1_CDKN2A

check button In-frame Fusion Transcript Sequences.

check button N-Truncated Transcript (5UTR-3CDS) Sequences

check button C-Truncated Transcript (5CDS-3UTR) Sequences
>DPM1_CDKN2A_ENST00000371582_ENST00000304494_49574899_21968241 length=683nt
Breakpoint=193nt
ATTCCGCTTCCGGCATCTGGCTCAGTTCCGCCATGGCCTCCTTGGAAGTCAGTCGTAGTCCTCGCAGGTCTCGGCGGGAGCTGGAAGTGCGCAGTCCACGACAGAACAAATATTCGGTGCTTTTACCTACCTACAACGAGCGCGAGAACC
TGCCGCTCATCGTGTGGCTGCTGGTGAAAAGCTTCTCCGAGAGACATCCCCGATTGAAAGAACCAGAGAGGCTCTGAGAAACCTCGGGAAACTTAGATCATCAGTCACCGAAGGTCCTACAGGGCCACAACTGCCCCCGCCACAACCCAC
CCCGCTTTCGTAGTTTTCATTTAGAAAATAGAGCTTTTAAAAATGTCCTGCCTTTTAACGTAGATATATGCCTTCCCCCACTACCGTAAATGTCCATTTATATCATTTTTTATATATTCTTATAAAAATGTAAAAAAGAAAAACACCGCT
TCTGCCTTTTCACTGTGTTGGAGTTTTCTGGAGTGAGCACTCACGCCCTAAGCGCACATTCATGTGGGCATTTCTTGCGAGCCTCGCAGCCTCCGGAAGCTGTCGACTTCATGACAAGCATTTTGTGAACTAGGGAAGCTCAGGGGGGTT
ACTGGCTTCTCTTGAGTCACACTGCTAGCAAATGGCAGAACCAAAGCTCAAATAAAAATAAAATAATTTTCATTCATTCACTC

>DPM1_CDKN2A_ENST00000371582_ENST00000361570_49574899_21968241 length=193nt
Breakpoint=193nt
ATTCCGCTTCCGGCATCTGGCTCAGTTCCGCCATGGCCTCCTTGGAAGTCAGTCGTAGTCCTCGCAGGTCTCGGCGGGAGCTGGAAGTGCGCAGTCCACGACAGAACAAATATTCGGTGCTTTTACCTACCTACAACGAGCGCGAGAACC
TGCCGCTCATCGTGTGGCTGCTGGTGAAAAGCTTCTCCGAGAG

>DPM1_CDKN2A_ENST00000371582_ENST00000494262_49574899_21968241 length=254nt
Breakpoint=193nt
ATTCCGCTTCCGGCATCTGGCTCAGTTCCGCCATGGCCTCCTTGGAAGTCAGTCGTAGTCCTCGCAGGTCTCGGCGGGAGCTGGAAGTGCGCAGTCCACGACAGAACAAATATTCGGTGCTTTTACCTACCTACAACGAGCGCGAGAACC
TGCCGCTCATCGTGTGGCTGCTGGTGAAAAGCTTCTCCGAGAGACATCCCCGATTGAAAGAACCAGAGAGGCTCTGAGAAACCTCGGGAAACTTAGATCATCAG

>DPM1_CDKN2A_ENST00000371582_ENST00000498124_49574899_21968241 length=193nt
Breakpoint=193nt
ATTCCGCTTCCGGCATCTGGCTCAGTTCCGCCATGGCCTCCTTGGAAGTCAGTCGTAGTCCTCGCAGGTCTCGGCGGGAGCTGGAAGTGCGCAGTCCACGACAGAACAAATATTCGGTGCTTTTACCTACCTACAACGAGCGCGAGAACC
TGCCGCTCATCGTGTGGCTGCTGGTGAAAAGCTTCTCCGAGAG

>DPM1_CDKN2A_ENST00000371582_ENST00000498628_49574899_21968241 length=331nt
Breakpoint=193nt
ATTCCGCTTCCGGCATCTGGCTCAGTTCCGCCATGGCCTCCTTGGAAGTCAGTCGTAGTCCTCGCAGGTCTCGGCGGGAGCTGGAAGTGCGCAGTCCACGACAGAACAAATATTCGGTGCTTTTACCTACCTACAACGAGCGCGAGAACC
TGCCGCTCATCGTGTGGCTGCTGGTGAAAAGCTTCTCCGAGAGACATCCCCGATTGAAAGAACCAGAGAGGCTCTGAGAAACCTCGGGAAACTTAGATCATCAGTCACCGAAGGTCCTACAGGGCCACAACTGCCCCCGCCACAACCCAC
CCCGCTTTCGTAGTTTTCATTTAGAAAATAG

>DPM1_CDKN2A_ENST00000371582_ENST00000530628_49574899_21968241 length=193nt
Breakpoint=193nt
ATTCCGCTTCCGGCATCTGGCTCAGTTCCGCCATGGCCTCCTTGGAAGTCAGTCGTAGTCCTCGCAGGTCTCGGCGGGAGCTGGAAGTGCGCAGTCCACGACAGAACAAATATTCGGTGCTTTTACCTACCTACAACGAGCGCGAGAACC
TGCCGCTCATCGTGTGGCTGCTGGTGAAAAGCTTCTCCGAGAG

>DPM1_CDKN2A_ENST00000371582_ENST00000578845_49574899_21968241 length=440nt
Breakpoint=193nt
ATTCCGCTTCCGGCATCTGGCTCAGTTCCGCCATGGCCTCCTTGGAAGTCAGTCGTAGTCCTCGCAGGTCTCGGCGGGAGCTGGAAGTGCGCAGTCCACGACAGAACAAATATTCGGTGCTTTTACCTACCTACAACGAGCGCGAGAACC
TGCCGCTCATCGTGTGGCTGCTGGTGAAAAGCTTCTCCGAGAGACATCCCCGATTGAAAGAACCAGAGAGGCTCTGAGAAACCTCGGGAAACTTAGATCATCAGTCACCGAAGGTCCTACAGGGCCACAACTGCCCCCGCCACAACCCAC
CCCGCTTTCGTAGTTTTCATTTAGAAAATAGAGCTTTTAAAAATGTCCTGCCTTTTAACGTAGATATATGCCTTCCCCCACTACCGTAAATGTCCATTTATATCATTTTTTATATATTCTTATAAAAATGTAAAAAAGAA

>DPM1_CDKN2A_ENST00000371582_ENST00000579122_49574899_21968241 length=445nt
Breakpoint=193nt
ATTCCGCTTCCGGCATCTGGCTCAGTTCCGCCATGGCCTCCTTGGAAGTCAGTCGTAGTCCTCGCAGGTCTCGGCGGGAGCTGGAAGTGCGCAGTCCACGACAGAACAAATATTCGGTGCTTTTACCTACCTACAACGAGCGCGAGAACC
TGCCGCTCATCGTGTGGCTGCTGGTGAAAAGCTTCTCCGAGAGACATCCCCGATTGAAAGAACCAGAGAGGCTCTGAGAAACCTCGGGAAACTTAGATCATCAGTCACCGAAGGTCCTACAGGGCCACAACTGCCCCCGCCACAACCCAC
CCCGCTTTCGTAGTTTTCATTTAGAAAATAGAGCTTTTAAAAATGTCCTGCCTTTTAACGTAGATATATGCCTTCCCCCACTACCGTAAATGTCCATTTATATCATTTTTTATATATTCTTATAAAAATGTAAAAAAGAAAAACA

>DPM1_CDKN2A_ENST00000371582_ENST00000579755_49574899_21968241 length=193nt
Breakpoint=193nt
ATTCCGCTTCCGGCATCTGGCTCAGTTCCGCCATGGCCTCCTTGGAAGTCAGTCGTAGTCCTCGCAGGTCTCGGCGGGAGCTGGAAGTGCGCAGTCCACGACAGAACAAATATTCGGTGCTTTTACCTACCTACAACGAGCGCGAGAACC
TGCCGCTCATCGTGTGGCTGCTGGTGAAAAGCTTCTCCGAGAG

>DPM1_CDKN2A_ENST00000371583_ENST00000304494_49574899_21968241 length=660nt
Breakpoint=170nt
AGTTCCGCCATGGCCTCCTTGGAAGTCAGTCGTAGTCCTCGCAGGTCTCGGCGGGAGCTGGAAGTGCGCAGTCCACGACAGAACAAATATTCGGTGCTTTTACCTACCTACAACGAGCGCGAGAACCTGCCGCTCATCGTGTGGCTGCTG
GTGAAAAGCTTCTCCGAGAGACATCCCCGATTGAAAGAACCAGAGAGGCTCTGAGAAACCTCGGGAAACTTAGATCATCAGTCACCGAAGGTCCTACAGGGCCACAACTGCCCCCGCCACAACCCACCCCGCTTTCGTAGTTTTCATTTA
GAAAATAGAGCTTTTAAAAATGTCCTGCCTTTTAACGTAGATATATGCCTTCCCCCACTACCGTAAATGTCCATTTATATCATTTTTTATATATTCTTATAAAAATGTAAAAAAGAAAAACACCGCTTCTGCCTTTTCACTGTGTTGGAG
TTTTCTGGAGTGAGCACTCACGCCCTAAGCGCACATTCATGTGGGCATTTCTTGCGAGCCTCGCAGCCTCCGGAAGCTGTCGACTTCATGACAAGCATTTTGTGAACTAGGGAAGCTCAGGGGGGTTACTGGCTTCTCTTGAGTCACACT
GCTAGCAAATGGCAGAACCAAAGCTCAAATAAAAATAAAATAATTTTCATTCATTCACTC

>DPM1_CDKN2A_ENST00000371583_ENST00000361570_49574899_21968241 length=170nt
Breakpoint=170nt
AGTTCCGCCATGGCCTCCTTGGAAGTCAGTCGTAGTCCTCGCAGGTCTCGGCGGGAGCTGGAAGTGCGCAGTCCACGACAGAACAAATATTCGGTGCTTTTACCTACCTACAACGAGCGCGAGAACCTGCCGCTCATCGTGTGGCTGCTG
GTGAAAAGCTTCTCCGAGAG

>DPM1_CDKN2A_ENST00000371583_ENST00000494262_49574899_21968241 length=231nt
Breakpoint=170nt
AGTTCCGCCATGGCCTCCTTGGAAGTCAGTCGTAGTCCTCGCAGGTCTCGGCGGGAGCTGGAAGTGCGCAGTCCACGACAGAACAAATATTCGGTGCTTTTACCTACCTACAACGAGCGCGAGAACCTGCCGCTCATCGTGTGGCTGCTG
GTGAAAAGCTTCTCCGAGAGACATCCCCGATTGAAAGAACCAGAGAGGCTCTGAGAAACCTCGGGAAACTTAGATCATCAG

>DPM1_CDKN2A_ENST00000371583_ENST00000498124_49574899_21968241 length=170nt
Breakpoint=170nt
AGTTCCGCCATGGCCTCCTTGGAAGTCAGTCGTAGTCCTCGCAGGTCTCGGCGGGAGCTGGAAGTGCGCAGTCCACGACAGAACAAATATTCGGTGCTTTTACCTACCTACAACGAGCGCGAGAACCTGCCGCTCATCGTGTGGCTGCTG
GTGAAAAGCTTCTCCGAGAG

>DPM1_CDKN2A_ENST00000371583_ENST00000498628_49574899_21968241 length=308nt
Breakpoint=170nt
AGTTCCGCCATGGCCTCCTTGGAAGTCAGTCGTAGTCCTCGCAGGTCTCGGCGGGAGCTGGAAGTGCGCAGTCCACGACAGAACAAATATTCGGTGCTTTTACCTACCTACAACGAGCGCGAGAACCTGCCGCTCATCGTGTGGCTGCTG
GTGAAAAGCTTCTCCGAGAGACATCCCCGATTGAAAGAACCAGAGAGGCTCTGAGAAACCTCGGGAAACTTAGATCATCAGTCACCGAAGGTCCTACAGGGCCACAACTGCCCCCGCCACAACCCACCCCGCTTTCGTAGTTTTCATTTA
GAAAATAG

>DPM1_CDKN2A_ENST00000371583_ENST00000530628_49574899_21968241 length=170nt
Breakpoint=170nt
AGTTCCGCCATGGCCTCCTTGGAAGTCAGTCGTAGTCCTCGCAGGTCTCGGCGGGAGCTGGAAGTGCGCAGTCCACGACAGAACAAATATTCGGTGCTTTTACCTACCTACAACGAGCGCGAGAACCTGCCGCTCATCGTGTGGCTGCTG
GTGAAAAGCTTCTCCGAGAG

>DPM1_CDKN2A_ENST00000371583_ENST00000578845_49574899_21968241 length=417nt
Breakpoint=170nt
AGTTCCGCCATGGCCTCCTTGGAAGTCAGTCGTAGTCCTCGCAGGTCTCGGCGGGAGCTGGAAGTGCGCAGTCCACGACAGAACAAATATTCGGTGCTTTTACCTACCTACAACGAGCGCGAGAACCTGCCGCTCATCGTGTGGCTGCTG
GTGAAAAGCTTCTCCGAGAGACATCCCCGATTGAAAGAACCAGAGAGGCTCTGAGAAACCTCGGGAAACTTAGATCATCAGTCACCGAAGGTCCTACAGGGCCACAACTGCCCCCGCCACAACCCACCCCGCTTTCGTAGTTTTCATTTA
GAAAATAGAGCTTTTAAAAATGTCCTGCCTTTTAACGTAGATATATGCCTTCCCCCACTACCGTAAATGTCCATTTATATCATTTTTTATATATTCTTATAAAAATGTAAAAAAGAA

>DPM1_CDKN2A_ENST00000371583_ENST00000579122_49574899_21968241 length=422nt
Breakpoint=170nt
AGTTCCGCCATGGCCTCCTTGGAAGTCAGTCGTAGTCCTCGCAGGTCTCGGCGGGAGCTGGAAGTGCGCAGTCCACGACAGAACAAATATTCGGTGCTTTTACCTACCTACAACGAGCGCGAGAACCTGCCGCTCATCGTGTGGCTGCTG
GTGAAAAGCTTCTCCGAGAGACATCCCCGATTGAAAGAACCAGAGAGGCTCTGAGAAACCTCGGGAAACTTAGATCATCAGTCACCGAAGGTCCTACAGGGCCACAACTGCCCCCGCCACAACCCACCCCGCTTTCGTAGTTTTCATTTA
GAAAATAGAGCTTTTAAAAATGTCCTGCCTTTTAACGTAGATATATGCCTTCCCCCACTACCGTAAATGTCCATTTATATCATTTTTTATATATTCTTATAAAAATGTAAAAAAGAAAAACA

>DPM1_CDKN2A_ENST00000371583_ENST00000579755_49574899_21968241 length=170nt
Breakpoint=170nt
AGTTCCGCCATGGCCTCCTTGGAAGTCAGTCGTAGTCCTCGCAGGTCTCGGCGGGAGCTGGAAGTGCGCAGTCCACGACAGAACAAATATTCGGTGCTTTTACCTACCTACAACGAGCGCGAGAACCTGCCGCTCATCGTGTGGCTGCTG
GTGAAAAGCTTCTCCGAGAG

>DPM1_CDKN2A_ENST00000371588_ENST00000304494_49574899_21968241 length=678nt
Breakpoint=188nt
GCTTCCGGCATCTGGCTCAGTTCCGCCATGGCCTCCTTGGAAGTCAGTCGTAGTCCTCGCAGGTCTCGGCGGGAGCTGGAAGTGCGCAGTCCACGACAGAACAAATATTCGGTGCTTTTACCTACCTACAACGAGCGCGAGAACCTGCCG
CTCATCGTGTGGCTGCTGGTGAAAAGCTTCTCCGAGAGACATCCCCGATTGAAAGAACCAGAGAGGCTCTGAGAAACCTCGGGAAACTTAGATCATCAGTCACCGAAGGTCCTACAGGGCCACAACTGCCCCCGCCACAACCCACCCCGC
TTTCGTAGTTTTCATTTAGAAAATAGAGCTTTTAAAAATGTCCTGCCTTTTAACGTAGATATATGCCTTCCCCCACTACCGTAAATGTCCATTTATATCATTTTTTATATATTCTTATAAAAATGTAAAAAAGAAAAACACCGCTTCTGC
CTTTTCACTGTGTTGGAGTTTTCTGGAGTGAGCACTCACGCCCTAAGCGCACATTCATGTGGGCATTTCTTGCGAGCCTCGCAGCCTCCGGAAGCTGTCGACTTCATGACAAGCATTTTGTGAACTAGGGAAGCTCAGGGGGGTTACTGG
CTTCTCTTGAGTCACACTGCTAGCAAATGGCAGAACCAAAGCTCAAATAAAAATAAAATAATTTTCATTCATTCACTC

>DPM1_CDKN2A_ENST00000371588_ENST00000361570_49574899_21968241 length=188nt
Breakpoint=188nt
GCTTCCGGCATCTGGCTCAGTTCCGCCATGGCCTCCTTGGAAGTCAGTCGTAGTCCTCGCAGGTCTCGGCGGGAGCTGGAAGTGCGCAGTCCACGACAGAACAAATATTCGGTGCTTTTACCTACCTACAACGAGCGCGAGAACCTGCCG
CTCATCGTGTGGCTGCTGGTGAAAAGCTTCTCCGAGAG

>DPM1_CDKN2A_ENST00000371588_ENST00000494262_49574899_21968241 length=249nt
Breakpoint=188nt
GCTTCCGGCATCTGGCTCAGTTCCGCCATGGCCTCCTTGGAAGTCAGTCGTAGTCCTCGCAGGTCTCGGCGGGAGCTGGAAGTGCGCAGTCCACGACAGAACAAATATTCGGTGCTTTTACCTACCTACAACGAGCGCGAGAACCTGCCG
CTCATCGTGTGGCTGCTGGTGAAAAGCTTCTCCGAGAGACATCCCCGATTGAAAGAACCAGAGAGGCTCTGAGAAACCTCGGGAAACTTAGATCATCAG

>DPM1_CDKN2A_ENST00000371588_ENST00000498124_49574899_21968241 length=188nt
Breakpoint=188nt
GCTTCCGGCATCTGGCTCAGTTCCGCCATGGCCTCCTTGGAAGTCAGTCGTAGTCCTCGCAGGTCTCGGCGGGAGCTGGAAGTGCGCAGTCCACGACAGAACAAATATTCGGTGCTTTTACCTACCTACAACGAGCGCGAGAACCTGCCG
CTCATCGTGTGGCTGCTGGTGAAAAGCTTCTCCGAGAG

>DPM1_CDKN2A_ENST00000371588_ENST00000498628_49574899_21968241 length=326nt
Breakpoint=188nt
GCTTCCGGCATCTGGCTCAGTTCCGCCATGGCCTCCTTGGAAGTCAGTCGTAGTCCTCGCAGGTCTCGGCGGGAGCTGGAAGTGCGCAGTCCACGACAGAACAAATATTCGGTGCTTTTACCTACCTACAACGAGCGCGAGAACCTGCCG
CTCATCGTGTGGCTGCTGGTGAAAAGCTTCTCCGAGAGACATCCCCGATTGAAAGAACCAGAGAGGCTCTGAGAAACCTCGGGAAACTTAGATCATCAGTCACCGAAGGTCCTACAGGGCCACAACTGCCCCCGCCACAACCCACCCCGC
TTTCGTAGTTTTCATTTAGAAAATAG

>DPM1_CDKN2A_ENST00000371588_ENST00000530628_49574899_21968241 length=188nt
Breakpoint=188nt
GCTTCCGGCATCTGGCTCAGTTCCGCCATGGCCTCCTTGGAAGTCAGTCGTAGTCCTCGCAGGTCTCGGCGGGAGCTGGAAGTGCGCAGTCCACGACAGAACAAATATTCGGTGCTTTTACCTACCTACAACGAGCGCGAGAACCTGCCG
CTCATCGTGTGGCTGCTGGTGAAAAGCTTCTCCGAGAG

>DPM1_CDKN2A_ENST00000371588_ENST00000578845_49574899_21968241 length=435nt
Breakpoint=188nt
GCTTCCGGCATCTGGCTCAGTTCCGCCATGGCCTCCTTGGAAGTCAGTCGTAGTCCTCGCAGGTCTCGGCGGGAGCTGGAAGTGCGCAGTCCACGACAGAACAAATATTCGGTGCTTTTACCTACCTACAACGAGCGCGAGAACCTGCCG
CTCATCGTGTGGCTGCTGGTGAAAAGCTTCTCCGAGAGACATCCCCGATTGAAAGAACCAGAGAGGCTCTGAGAAACCTCGGGAAACTTAGATCATCAGTCACCGAAGGTCCTACAGGGCCACAACTGCCCCCGCCACAACCCACCCCGC
TTTCGTAGTTTTCATTTAGAAAATAGAGCTTTTAAAAATGTCCTGCCTTTTAACGTAGATATATGCCTTCCCCCACTACCGTAAATGTCCATTTATATCATTTTTTATATATTCTTATAAAAATGTAAAAAAGAA

>DPM1_CDKN2A_ENST00000371588_ENST00000579122_49574899_21968241 length=440nt
Breakpoint=188nt
GCTTCCGGCATCTGGCTCAGTTCCGCCATGGCCTCCTTGGAAGTCAGTCGTAGTCCTCGCAGGTCTCGGCGGGAGCTGGAAGTGCGCAGTCCACGACAGAACAAATATTCGGTGCTTTTACCTACCTACAACGAGCGCGAGAACCTGCCG
CTCATCGTGTGGCTGCTGGTGAAAAGCTTCTCCGAGAGACATCCCCGATTGAAAGAACCAGAGAGGCTCTGAGAAACCTCGGGAAACTTAGATCATCAGTCACCGAAGGTCCTACAGGGCCACAACTGCCCCCGCCACAACCCACCCCGC
TTTCGTAGTTTTCATTTAGAAAATAGAGCTTTTAAAAATGTCCTGCCTTTTAACGTAGATATATGCCTTCCCCCACTACCGTAAATGTCCATTTATATCATTTTTTATATATTCTTATAAAAATGTAAAAAAGAAAAACA

>DPM1_CDKN2A_ENST00000371588_ENST00000579755_49574899_21968241 length=188nt
Breakpoint=188nt
GCTTCCGGCATCTGGCTCAGTTCCGCCATGGCCTCCTTGGAAGTCAGTCGTAGTCCTCGCAGGTCTCGGCGGGAGCTGGAAGTGCGCAGTCCACGACAGAACAAATATTCGGTGCTTTTACCTACCTACAACGAGCGCGAGAACCTGCCG
CTCATCGTGTGGCTGCTGGTGAAAAGCTTCTCCGAGAG


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Fusion Protein Sequence for DPM1_CDKN2A

check button In-frame Fusion Protein Sequences.

check button N-Truncated Protein (5UTR-3CDS) Sequences

check button C-Truncated Protein (5CDS-3UTR) Sequences

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Personalized Fusion Protein Sequence for DPM1_CDKN2A


check button TCGA Kinase/DNA-binding Domain Mutated Fusion Protein Sequences
NumGene GroupDomain LociFusion Protein IDFusion Gene NamePartnerMutated Residue in WT ProteinSeq. LengthMutated Residue in Fusion Protein

check button CCLE Kinase/DNA-binding Domain Mutated Fusion Protein Sequences

NumGene GroupDomain LociFusion Protein IDFusion Gene NamePartnerMutated Residue in WT ProteinSeq. LengthMutated Residue in Fusion Protein

check button TCGA All Mutated Fusion Protein Sequences


Fusion Protein IDSample IDMutated PartnerAAchange in WTSeq. LengthAAchange in Fusion

check button CCLE All Mutated Fusion Protein Sequences


Fusion Protein IDSample IDMutated PartnerAAchange in WTSeq. LengthAAchange in Fusion

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Fusion Gene Exprssed Samples for DPM1_CDKN2A


check buttonRNA-seq based fusion gene expressed samples.
SourceStudyDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDBSTADTCGA-CD-8525-01ADPM1

chr20

49574899-CDKN2A

chr9

21968241

-

check buttonDNA-seq based fusion gene expressed samples.
SourceStudyDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrandSV type


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Related Drugs for DPM1_CDKN2A


check button PubMed Abstract Search With ['A-B' AND 'drug'], ['A::B' AND 'drug']
* For more details on the Studied, Reported, Approved Drugs targeting this fusion gene, Go to FusionPub.
PMIDFusion Gene NameDrugStudy Title

check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status