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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene Breakpoints

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Tumorigenic MoA (Mechanism of Action) Scenarios of Fusion Geness

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Fusion Genomic Features

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Fusion Gene ORF Annotations

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Fusion Protein Retained/Non-Retained Functional Features

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Fusion Transcript Sequences

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Fusion Protein Sequences

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Personalized Fusion Protein Sequences

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Fusion Gene Expressed Samples

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Related Drugs

Fusion gene:DNER_TRIP12 (FusionGDB2 ID:HG92737TG9320)

Fusion Gene Summary for DNER_TRIP12

check button Fusion gene summary
Fusion gene informationFusion gene name: DNER_TRIP12
Fusion gene ID: hg92737tg9320
HgeneTgene
Gene symbol

DNER

TRIP12

Gene ID

92737

9320

Gene namedelta/notch like EGF repeat containingthyroid hormone receptor interactor 12
SynonymsUNQ26|betMRD49|TRIP-12|TRIPC|ULF
Cytomap

2q36.3

2q36.3

Type of geneprotein-codingprotein-coding
Descriptiondelta and Notch-like epidermal growth factor-related receptorH_NH0150O02.1WUGSC:H_NH0150O02.1delta-notch-like EGF repeat-containing transmembraneE3 ubiquitin-protein ligase TRIP12E3 ubiquitin-protein ligase for ArfHECT-type E3 ubiquitin transferase TRIP12TR-interacting protein 12probable E3 ubiquitin-protein ligase TRIP12thyroid receptor interacting protein 12
Modification date2024030520240407
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000341772, ENST00000482831, 
ENST00000482831, ENST00000341772, 
Fusion gene scores* DoF score* DoF score (Degree of Frequency) = # partners X # break points X # disease types
5 X 10 X 3=150
* DoF score (Degree of Frequency) = # partners X # break points X # disease types
13 X 16 X 12=2496
# samples 828
** MAII score** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)
log2(8/150*10)=-0.906890595608519
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)
log2(28/2496*10)=-3.15611920191728
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: DNER [Title/Abstract] AND TRIP12 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointDNER(230411662)-TRIP12(230650571), # samples:1

check buttonFusion gene breakpoints across DNER (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure
check buttonFusion gene breakpoints across TRIP12 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

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Fusion Gene Breakpoints for DNER_TRIP12


check button RNA-seq based exon junction arranged fusion gene breakpoints from 8 resources (TCGA, CCLE, cBioPortal, GenBank, ChimerDB, ChimerKB, ChildHoodFusions, and GTEx). For the expressed sample information, go to Fusion Gene Sample section.
HgeneHchrHbpTgeneTchrTbp
DNERchr2230411662TRIP12chr2230650571
DNERchr2230411663TRIP12chr2230650571
DNERchr2230406526TRIP12chr2230765558
DNERchr2229546947TRIP12chr2229785855


check button DNA-seq based exon junction arranged fusion gene breakpoints from dbVar. For the expressed sample information, go to Fusion Gene Sample section.
HgeneHchrHbpTgeneTchrTbpSV type
DNERchr2230450571TRIP12chr2230634046DUP
DNERchr2230559885TRIP12chr2230667876DUP
DNERchr2230530130TRIP12chr2230634690DUP
DNERchr2230508806TRIP12chr2230727479DUP
DNERchr2230449281TRIP12chr2230635367DUP
DNERchr2230418762TRIP12chr2230628922DUP
DNERchr2230493935TRIP12chr2230657194DUP
DNERchr2230304284TRIP12chr2230721273DUP
DNERchr2230493935TRIP12chr2230657197DUP
DNERchr2230575494TRIP12chr2230752964DUP
DNERchr2230517256TRIP12chr2230642134DUP
DNERchr2230573487TRIP12chr2230764226DUP
DNERchr2230566834TRIP12chr2230689317DUP
DNERchr2230491545TRIP12chr2230657293DUP
DNERchr2230491430TRIP12chr2230775587DUP
DNERchr2230487853TRIP12chr2230709082DUP
DNERchr2230421155TRIP12chr2230632643DUP
DNERchr2230304861TRIP12chr2230718969DUP


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Tumorigenic MoA (Mechanism of Action) Scenarios of Fusion Genes for DNER_TRIP12


check button To generate these tumorigenic scenario annotations, we implemented a deduction-first, retrieval-later computational framework. The pipeline first applies rule-guided reasoning across ten core mechanistic categories (M1–M10) derived from fusion gene biology to infer candidate mechanisms, tumorigenic scenarios, targeting points, and targeting backgrounds. To ensure empirical accountability, a governed Python workflow retrieves literature candidates via NCBI E-utilities and Europe PMC using tiered searches. Using JSON Schema-constrained LLM evidence judges (GPT-5.6 Luna and Terra), retrieved articles are evaluated for specificity and confidence without de novo PMID generation. This produces two distinct versions: a strict version restricted to high- or medium-confidence fusion-specific evidence, and an extended version incorporating broader gene-, pathway-, and contextual evidence.
* We have 10 tumorigenic mechanism categories of fusion genes as shown below.
Constitutively Active Kinases, Catalytic Domain Dysregulation, & Transmembrane Ligand FusionsAberrant Chimeric Transcription Factor / Fusion Transcription Factor ActivityEpigenetic Reprogramming / Histone Modifier DysregulationChromatin Remodeling DysregulationCondensate-Driven Transcriptional Rewiring / LLPPromoter / Enhancer HijackingDominant-Negative AntagonismCell Cycle / Checkpoint Bypass / RNA Processing DysregulationSubcellular Mislocalization / Spatial DysregulationNuclear Body / Sub-organellar Architecture Disruption & Differentiation Blockade

* Strict version: Restricted to high- or medium-confidence fusion-specific evidence.
Fusion Gene NameMechanism CategoryMechanism PubMedTumorigenic ScenariosTumorigenic Scenario PubMedTargeting PointsTargeting PubMedMechanism BackgroundMechanism Background PubMed

* Extended version: Includes all strict-level fusion evidence plus broader gene-, pathway-, and low-confidence contextual evidence.
Fusion Gene NameMechanism CategoryMechanism PubMedTumorigenic ScenariosTumorigenic Scenario PubMedTargeting PointsTargeting PubMedMechanism BackgroundMechanism Background PubMed

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneTRIP12

GO:0000209

protein polyubiquitination

30982744

TgeneTRIP12

GO:0006511

ubiquitin-dependent protein catabolic process

18627766|20208519|30982744


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Fusion Genomic Features for DNER_TRIP12


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence) of In-frame fusion genes. FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
DNERchr2230411662-TRIP12chr2230650571-5.61e-071.00e+00


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence) of 5UTR-3CSD fusion genes (N-truncated cases).
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence) of 5CDS-3UTR fusion genes (C-truncated cases).
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of six genomic regulatory feature tracks across a ±5 kb window centered on the fusion breakpoints. We input the breakpoint sequences into AlphaGenome and obtained predicted genome tracks at single-base-pair resolution for each modality by running a single forward pass over the reference sequence. Specifically, for each breakpoint, AlphaGenome processed and returned predicted track data across diverse modalities, which were then averaged across all tracks within each output type and visualized across the ±5 kb window. The left panel shows the 5'-gene breakpoint ±5 kb area, and the right panel shows the 3'-gene breakpoint area, with tracks grouped by category: chromatin accessibility (DNase-seq, ATAC-seq), active transcription (RNA-seq, CAGE), and chromatin binding (ChIP-Histone, ChIP-TF).
genomic feature

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Fusion Gene ORF Annotations for DNER_TRIP12

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000341772ENST00000283943DNERchr2

230411662

-TRIP12chr2

230650571

-
In-frameENST00000341772ENST00000389044DNERchr2

230411662

-TRIP12chr2

230650571

-
In-frameENST00000341772ENST00000389045DNERchr2

230411662

-TRIP12chr2

230650571

-

check buttonORFfinder Result Based On The Fusion Transcript Sequences of the In-frame Fusion Genes.
HenstTenstHgeneHchrHbpTgeneTchrTbpSeq length
(transcript)
Seq length
(peptide)

check buttonORFfinder Result Based On The Fusion Transcript Sequences of the 5UTR-3CDS Fusion Genes for N-Truncated Protein Search.
HenstTenstHgeneHchrHbpTgeneTchrTbpSeq length
(transcript)
Seq length
(peptide)

check buttonORFfinder Result Based On The Fusion Transcript Sequences of the 5CDS-3UTR Fusion Genes for C-Truncated Protein Search.
HenstTenstHgeneHchrHbpTgeneTchrTbpSeq length
(transcript)
Seq length
(peptide)

check buttonDeepORF Prediction of The Coding Potential Based on The Fusion Transcript Sequence of In-frame Fusion Genes. DeepORF is a Coding Potential Classifier Based on Convolutional Neural Network by Comparing the Real Ribo-seq Data. If the No-coding Score < 0.5 and Coding Score > 0.5, Then The In-frame Fusion Transcript is Predicted as Being Likely Translated.
HenstTenstHgeneHchrHbpTgeneTchrTbpNo-coding scoreCoding score
ENST00000341772ENST00000283943DNERchr2230411662TRIP12chr22306505711.20e-041.00e+00
ENST00000341772ENST00000389044DNERchr2230411662TRIP12chr22306505717.68e-051.00e+00
ENST00000341772ENST00000389045DNERchr2230411662TRIP12chr22306505717.68e-051.00e+00

check buttonDeepORF Prediction of The Coding Potential Based on The Fusion Transcript Sequence of 5UTR-3CDS Fusion Genes (Potential N-Truncated Proteins).
HenstTenstHgeneHchrHbpTgeneTchrTbpNo-coding scoreCoding score

check buttonDeepORF Prediction of The Coding Potential Based on The Fusion Transcript Sequence of 5CDS-3UTR Fusion Genes (Potential C-Truncated Proteins).
HenstTenstHgeneHchrHbpTgeneTchrTbpNo-coding scoreCoding score

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Fusion Protein Retained/Non-Retained Functional Features for DNER_TRIP12

check buttonProtein Level Annotation from FGviewer
* Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at download page. Minus value of BPloci means that the break pointn is located before the CDS.
fgviewer annotation
- In-frame and retained protein feature among the 13 regional features (visualization across fusion protein length).
DNER_TRIP12_chr2-230411662_chr2-230650571.png
DNER_TRIP12_chr2-230411662_chr2-230650571.png

- In-frame and retained protein feature among the 13 regional features (texts).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneDNERchr2:230411662chr2:230650571ENST00000341772Q8NFT851344_92331.0738.0DomainEGF-like 1
HgeneDNERchr2:230411662chr2:230650571ENST00000341772Q8NFT851394_133331.0738.0DomainEGF-like 2
TgeneTRIP12chr2:230411662chr2:230650571ENST00000283943Q1466931411960_20671590.01993.0DomainHECT

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneDNERchr2:230411662chr2:230650571ENST00000341772Q8NFT8513309_348331.0738.0DomainEGF-like 3
HgeneDNERchr2:230411662chr2:230650571ENST00000341772Q8NFT8513349_390331.0738.0DomainEGF-like 4
HgeneDNERchr2:230411662chr2:230650571ENST00000341772Q8NFT8513392_428331.0738.0DomainEGF-like 5
HgeneDNERchr2:230411662chr2:230650571ENST00000341772Q8NFT8513430_466331.0738.0DomainEGF-like 6
HgeneDNERchr2:230411662chr2:230650571ENST00000341772Q8NFT8513468_503331.0738.0DomainEGF-like 7
HgeneDNERchr2:230411662chr2:230650571ENST00000341772Q8NFT8513505_541331.0738.0DomainEGF-like 8%3B calcium-binding
HgeneDNERchr2:230411662chr2:230650571ENST00000341772Q8NFT8513543_579331.0738.0DomainEGF-like 9
HgeneDNERchr2:230411662chr2:230650571ENST00000341772Q8NFT8513546_568331.0738.0DomainNote=Follistatin-like
HgeneDNERchr2:230411662chr2:230650571ENST00000341772Q8NFT8513581_617331.0738.0DomainEGF-like 10%3B calcium-binding
HgeneDNERchr2:230411662chr2:230650571ENST00000341772Q8NFT851335_640331.0738.0Topological domainExtracellular
HgeneDNERchr2:230411662chr2:230650571ENST00000341772Q8NFT8513662_737331.0738.0Topological domainCytoplasmic
HgeneDNERchr2:230411662chr2:230650571ENST00000341772Q8NFT8513641_661331.0738.0TransmembraneHelical
TgeneTRIP12chr2:230411662chr2:230650571ENST00000283943Q1466931411001_10141590.01993.0Compositional biasBasic residues
TgeneTRIP12chr2:230411662chr2:230650571ENST00000283943Q1466931411017_10261590.01993.0Compositional biasBasic and acidic residues
TgeneTRIP12chr2:230411662chr2:230650571ENST00000283943Q1466931411029_10401590.01993.0Compositional biasLow complexity
TgeneTRIP12chr2:230411662chr2:230650571ENST00000283943Q1466931411041_10621590.01993.0Compositional biasPolar residues
TgeneTRIP12chr2:230411662chr2:230650571ENST00000283943Q146693141119_1321590.01993.0Compositional biasPolar residues
TgeneTRIP12chr2:230411662chr2:230650571ENST00000283943Q146693141154_1661590.01993.0Compositional biasLow complexity
TgeneTRIP12chr2:230411662chr2:230650571ENST00000283943Q146693141175_2161590.01993.0Compositional biasLow complexity
TgeneTRIP12chr2:230411662chr2:230650571ENST00000283943Q14669314118_271590.01993.0Compositional biasPolar residues
TgeneTRIP12chr2:230411662chr2:230650571ENST00000283943Q1466931411_101590.01993.0Compositional biasPolar residues
TgeneTRIP12chr2:230411662chr2:230650571ENST00000283943Q146693141280_2901590.01993.0Compositional biasPolar residues
TgeneTRIP12chr2:230411662chr2:230650571ENST00000283943Q146693141326_3381590.01993.0Compositional biasPolar residues
TgeneTRIP12chr2:230411662chr2:230650571ENST00000283943Q146693141346_3581590.01993.0Compositional biasBasic and acidic residues
TgeneTRIP12chr2:230411662chr2:230650571ENST00000283943Q146693141360_3711590.01993.0Compositional biasPolar residues
TgeneTRIP12chr2:230411662chr2:230650571ENST00000283943Q14669314148_701590.01993.0Compositional biasBasic and acidic residues
TgeneTRIP12chr2:230411662chr2:230650571ENST00000283943Q14669314178_881590.01993.0Compositional biasPolar residues
TgeneTRIP12chr2:230411662chr2:230650571ENST00000283943Q146693141803_8121590.01993.0Compositional biasPolar residues
TgeneTRIP12chr2:230411662chr2:230650571ENST00000283943Q146693141948_9731590.01993.0Compositional biasLow complexity
TgeneTRIP12chr2:230411662chr2:230650571ENST00000283943Q146693141797_9111590.01993.0DomainWWE
TgeneTRIP12chr2:230411662chr2:230650571ENST00000283943Q1466931411407_14331590.01993.0RegionDisordered
TgeneTRIP12chr2:230411662chr2:230650571ENST00000283943Q1466931411568_15871590.01993.0RegionDisordered
TgeneTRIP12chr2:230411662chr2:230650571ENST00000283943Q1466931411571_16451590.01993.0RegionNote=K-box
TgeneTRIP12chr2:230411662chr2:230650571ENST00000283943Q1466931411_3981590.01993.0RegionDisordered
TgeneTRIP12chr2:230411662chr2:230650571ENST00000283943Q146693141797_8171590.01993.0RegionDisordered
TgeneTRIP12chr2:230411662chr2:230650571ENST00000283943Q146693141938_10801590.01993.0RegionDisordered
TgeneTRIP12chr2:230411662chr2:230650571ENST00000283943Q146693141532_5631590.01993.0RepeatARM 1
TgeneTRIP12chr2:230411662chr2:230650571ENST00000283943Q146693141564_6091590.01993.0RepeatARM 2
TgeneTRIP12chr2:230411662chr2:230650571ENST00000283943Q146693141610_6481590.01993.0RepeatARM 3
TgeneTRIP12chr2:230411662chr2:230650571ENST00000283943Q146693141649_6871590.01993.0RepeatARM 4
TgeneTRIP12chr2:230411662chr2:230650571ENST00000283943Q146693141688_7291590.01993.0RepeatARM 5
TgeneTRIP12chr2:230411662chr2:230650571ENST00000283943Q146693141730_7791590.01993.0RepeatARM 6


check button - Retained PPIs in in-frame fusion.
PartnerHgeneHbpTgeneTbpENSTUniProtStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerHgeneHbpTgeneTbpENSTUniProtStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with
HgeneDNERchr2:230411662TRIP12chr2:230650571ENST00000341772Q8NFT8513677_680331.0738.0RegionAP1G1 and somatodendritic targeting


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Fusion Transcript Sequence for DNER_TRIP12

check button In-frame Fusion Transcript Sequences.
>DNER_TRIP12_ENST00000341772_ENST00000283943_230411662_230650571 length=6053nt
Breakpoint=1128nt
CGCAGCTGCAGGAGGCGCCCGGCCCGGCGGAGCAGCCCTAGCCGCCACCGTCGCTCTCGCAGCTCTCGTCGCCACTGCCACCGCCGCCGCCGTCACTGCGTCCTGGCTCCGGCTCCCGCGCCCTCCCGGCCGGCCATGCAGCCCCGCCGC
GCCCAGGCGCCCGGTGCGCAGCTGCTGCCCGCGCTGGCCCTGCTGCTGCTGCTGCTCGGAGCGGGGCCCCGAGGCAGCTCCCTGGCCAACCCGGTGCCCGCCGCGCCCCTGTCTGCGCCCGGGCCGTGCGCCGCGCAGCCCTGCCGGAAT
GGGGGTGTGTGCACCTCGCGCCCTGAGCCGGACCCGCAGCACCCGGCCCCCGCCGGCGAGCCTGGCTACAGCTGCACCTGCCCCGCCGGGATCTCCGGCGCCAACTGCCAGCTTGTTGCAGATCCTTGTGCCAGCAACCCTTGTCACCAT
GGCAACTGCAGCAGCAGCAGCAGCAGCAGCAGCGATGGCTACCTCTGCATTTGCAATGAAGGCTATGAAGGTCCCAACTGTGAACAGGCACTTCCCAGTCTCCCAGCCACTGGCTGGACCGAATCCATGGCACCCCGACAGCTTCAGCCT
GTTCCTGCTACTCAGGAGCCTGACAAAATCCTGCCTCGCTCTCAGGCAACGGTGACACTGCCTACCTGGCAGCCGAAAACAGGGCAGAAAGTTGTAGAAATGAAATGGGATCAAGTGGAGGTGATCCCAGATATTGCCTGTGGGAATGCC
AGTTCTAACAGCTCTGCGGGTGGCCGCCTGGTATCCTTTGAAGTGCCACAGAACACCTCAGTCAAGATTCGGCAAGATGCCACTGCCTCACTGATTTTGCTCTGGAAGGTCACGGCCACAGGATTCCAACAGTGCTCCCTCATAGATGGA
CGAAGTGTGACCCCCCTTCAGGCTTCAGGGGGACTGGTCCTCCTGGAGGAGATGCTCGCCTTGGGGAATAATCACTTTATTGGTTTTGTGAATGATTCTGTGACTAAGTCTATTGTGGCTTTGCGCTTAACTCTGGTGGTGAAGGTCAGC
ACCTGTGTGCCGGGGGAGAGTCACGCAAATGACTTGGAGTGTTCAGGAAAAGGAAAATGCACCACGAAGCCGTCAGAGCGTACTGTGAACCGAGAGGAGCTGCTGAAACAGGCGGAGTCTGTGATGCAGGACCTCGGCAGCTCACGGGCC
ATGTTAGAAATCCAGTATGAAAATGAGGTTGGTACAGGTCTTGGGCCTACACTGGAGTTTTATGCGCTTGTATCTCAGGAACTACAGAGAGCTGACTTGGGTCTTTGGAGAGGTGAAGAAGTAACTCTTAGCAATCCAAAAGGGAGCCAA
GAAGGGACCAAGTATATTCAAAACCTCCAGGGCCTGTTTGCGCTTCCCTTTGGTAGGACAGCAAAGCCAGCTCATATCGCAAAGGTTAAGATGAAGTTTCGCTTCTTAGGAAAATTAATGGCCAAGGCTATCATGGATTTCAGATTGGTG
GACCTTCCCCTTGGCTTACCCTTTTATAAATGGATGCTACGGCAAGAAACTTCACTGACATCACACGATTTGTTTGACATCGACCCAGTTGTAGCCAGATCAGTTTATCACCTAGAAGACATTGTCAGACAGAAGAAAAGACTTGAACAA
GATAAATCCCAGACCAAAGAGAGTCTACAGTATGCATTAGAAACCTTGACTATGAATGGCTGCTCAGTTGAAGATCTAGGACTGGATTTCACTCTGCCAGGGTTTCCCAATATCGAACTGAAGAAAGGAGGGAAGGATATACCAGTCACT
ATCCACAATTTAGAGGAGTATCTAAGACTGGTTATATTCTGGGCACTAAATGAAGGCGTTTCTAGGCAATTTGATTCGTTCAGAGATGGATTTGAATCAGTCTTCCCACTCAGTCATCTTCAGTACTTCTACCCGGAGGAACTGGATCAG
CTCCTTTGTGGCAGTAAAGCAGACACTTGGGATGCAAAGACACTGATGGAATGCTGTAGGCCTGATCATGGTTATACTCATGACAGTCGGGCTGTGAAGTTTTTGTTTGAGATTCTCAGTAGTTTTGATAATGAGCAGCAGAGGTTATTT
CTCCAGTTTGTGACTGGTAGCCCAAGATTGCCTGTTGGAGGATTCCGGAGTTTGAATCCACCTTTGACAATTGTCCGAAAGACGTTTGAATCAACAGAAAACCCAGATGACTTCTTGCCCTCTGTAATGACTTGTGTGAACTATCTTAAG
TTGCCGGACTATTCAAGCATTGAGATAATGCGTGAAAAACTGTTGATAGCAGCAAGAGAAGGGCAGCAGTCGTTCCATCTTTCCTGATCATAGCAAGAAATGCAGTGTCTGCCTGTTACAGCAAAAGAAACAAATCATGATTTCTTTTCT
AATGTTATCACCTGAGTCAAGGAAACATGTTACGCCTTCTTGTTGTAGGAAAAACGGCTTGCAGATTATAAAGAGACATTTGGTTGATATTCATTAATGGCCCCATGGACTTAAAGTGATCAGGCCCTAAAACGTTGTTGTGATGAGGTT
TCTTTAGCAAGTTCTTGTTTAAATTATCATTTATTTGATGAGTGAAGTTTTTAACATGCTTTGCTGTGTGAAATTTAAAAAAGGGATGTTTTTCCAGGCTGGAACAATAAATGTGGCTGTGCAGTTTAATTCTGGGCTGTGTGTATCCAT
CTAGCTAAGTCTGCAGTTTTCTTTCCTCCAAAGACAACTCTTGTACATAAGTACAGAAATTTAAGCTCACATGTATTTGACAAATATAGTTTAGTAGACTAGCTCTATGTGCTTTTCACTTTCCTCTGATTTTCTCTCCCTGATTCATTA
TTATCTGTGCAGCTCACAGTTTTTTTTTTGTATACAACTCACAGTTCTCAAATTTTCGTTACCCATGGGCTTCTGTTGTCCCATGTTCTCTCCAGTTAAGATCTAATTTAAAATTCATTGGATTGAAATTTATTGAATATAATTCAGCTT
TTGTAACTAGGTAGACTTTTCTTATAGTTTAGTTTTAATATAGTTTAGGGTATTACTGGCTTTTTCCCAGGTGACACACTAAGGACTGTTTACATGGCAATTCCAGCAGCAACAGCCTCTGGAATGAGACAAGGAAAGCTCATTTGTTTC
TTTTATGAAGGTTAAGAAGTCTACAGCTTGGGCTGGCCGGTATTTATTATTCTGTGGCCAGAGGATTTTAAATTAATGTAAATTTTTTAAACAAAATAAGCAGTTTTCCTTCCCTGTTGGAGTAAAAAAATTTTTTTCCCTTTGTTGTTT
TACGTTTTTGTTCATAGTCTTCTTTATTCCACGCTCCTCTTCCCCTTCTCCCAGTGCTGACTTGGGACAAAACAGTTCAGCCTTTGTCTCGACGCAGATAAAAGCACCTGTAAGCAATGCTGTCCAGTCATTTTATGTGCTGATTTCTCA
AATCTGCAATAATCCATCAGGTTAATGTTTTTACCTGAAAATAAAGAAAGTTTGCTTCACCTTTTTGTTTATAGTTTTGTGCTGTATGCATAACTTTCAATTGTATAGATGTATTTCAATGCAAGGAAATCCACATATCTCCATGATTCG
GGTCATGGCTGATTTTGCTATTCAAACAATTTATAATAGCAACTTGAAGAAACTAAAATGTGAAGAGAAAATGGGAGGAGATTCCTTCCTAAGGTCCAAAACTAGGCCTGTGGCATAAATTTGAAGGAATTTTCCATAATTCATCTCCTT
GAAAATAAGAGATGAGCTAGTTTTTTTTTTTAATTGAACTTTGAGAAATCAATTTTTTTGACTGTTCTGTAAGTTTTAATTAATTGACACAAAAGCCCTTTTCCCTATCCCACCACCCAAAAGAAACTCAGTGGCTTGTTTGACATAGAT
TGCTGTGTCAATTTACACTTAAATGGCCTTATATGGAAATGTCCCCTCCTGAGAGTTCACTTGGGCAGTGACCCCATTAAGTGGAAGGGAACTGTCAGAGGAGTTGGGGGCAGAGAATTCTCTCCCTGTCTCTGCAGAGACTGACAAGTG
AATGGCTTTTCCCTGAAATCCAAGAAGGGAATTGTGTTTCTGCAGTTTTCACCACTAACAGCACAGTTGCTGAGCAGCTTCATCAAGTGAAGTTAAAGACTGAAACAATTTGTTTTCAACTGTTCTGATATCTTCCTGCAAATTAAGCAC
AAGGATTTTTGTGTGAACATAGCATTTTGTTCCTGATTTTTAAAGGGTTCTGTTAAAATTTAGACATGTATAAACAAAATAATGTTTCATCTGTACTTGACATTTTATCCATGTTGCAGCCCTGGCAAATTTGGCCTCATTGATTCCAGC
ATCTAATAAGTATATATGATGATTTTGACTCAAACTCTAAAGTCTTGAGTGTTTCAAAGTCAGTCGTTACCTGTTTAAAAGCCTCAGCCTTTAGCTTATTCCTCCTTCAATACACGGGACCTTTGGTTAATTTGGGGCAGGAAAACTCTT
AAAGTAATCTCTCTTGGCAGAGGCCTTATTGCACCAGAGGGAAAAAGTATATACTTCATTTGCTGTTACTCCAGTTATGCCTTAAATTCATTTGCTTGGTAATCCTATCAACGAGCACTAACTTCTTAGTATACTTTAAACACTTAGTTG
GGTAACAACTGAGATTTTGTTGTCCTTTATTTTTTGCTGAGATGGAGTCAGTCAGATGTTAGTCATAGCTAACACCGAATTTGTGTTGTCATTTAGACAGTTACTGATTCGATCTGCTTTATATATGAGAACGTATTTTTAACTATTCCA
AGAAGGAAGAGGTAGCTAAATGTAATCCCCTCTTCCTATCCCCCCAGAAAACTGAACTGTAAGTTCTAGGTAGACTAATTGGGAGCAGACACGGAGTTTTAGATGCCTTAGCCAAACCCAGCAGAAACCTTTCACACAGCCACTCATCGT
AAGAAACGCAGATTTTTCTCTTCTCATGCTTGTCTCTGGTTCCCTGCATTTGTAGTGACAGAACTTTCACTAGCAGGATATAAAGAAAGTAATTATGCTTGGAGTCCCTCTTTACTGGGTTTGAGTTAGGTGCATAACATGGAAAGGAGT
GGTGCCTTCAAATGAATGTGACCACTCCGTATTGTGGAGTGACTTCCCTAGGGCATCCTATACATCCTACCACAGAAGGCCAAGGGACAGAGCACCAACTTCAGTATCCAAGAAATTAGATCCACAACTCTTGATTTTCCACACTGAGGA
CTGTCGCGAGTAAGTTGTAAGTTTGCCGTCTTCCTTCTGGCTTAGCAGGTGCTGCAGCTGTACTCTCGACTCCTGTCTGTGAGCGTGAGCTCAGGAAATGAGAGTGGAGTCTATTCCAAAAAAAAAATGTGATGAAGTTTTTCATAAAAG
TGCATTCATATGCCAAATCCTTTTTGGAGGATTCTGGATGCTATTGTTCATTTCTCTACTAGTAAAATGATCAAGCCTTCATTTATTTTAGGCTTTGTTTTTTGATCCATTTTGTTTTCCCTGCTGTAATGAGAATAATTGTTTGGAAAT
GTCATATTCTGTATTTATGATTCTCTGAGAAATGCTTTTGTATAAGTCTTAGGTTTGACATTGCAGTAGTTGACATACACGGTAAAGGATAACCTAGTGACAAATCACTGAAGATGCTTCCTTTGTTACCTCAAAAAAAAAAATCCAGAC
AAAATAGCATTTATAAATATAGAAAACAGGATTGGCTGTTTTCCAAGAACTTCAAGTTAACAATTCTTATGCAAGGAAAAGTTCTTAATGCTAAAGACTTGTTCTGCATGAAGGAGACATTCTTTAATAATGGAAGAGGTGGTTTTATTT
TTACTACAAGCCGACTCATATTTCCAAACCTATAACCAATTGCTGATCTCCTGTGTAAAGCATTTTTTTCCTTTTATCTGAAACAGTGATTTATATGAACTGTTGGAATAATGGAACCTCAAACTACAGATGTGTATGTAAAATTGCATA
AATGCACTGACTTCCTTCTCCCTGACTATATTTTTAATAAACAGCATTATCCT

>DNER_TRIP12_ENST00000341772_ENST00000389044_230411662_230650571 length=2450nt
Breakpoint=1128nt
CGCAGCTGCAGGAGGCGCCCGGCCCGGCGGAGCAGCCCTAGCCGCCACCGTCGCTCTCGCAGCTCTCGTCGCCACTGCCACCGCCGCCGCCGTCACTGCGTCCTGGCTCCGGCTCCCGCGCCCTCCCGGCCGGCCATGCAGCCCCGCCGC
GCCCAGGCGCCCGGTGCGCAGCTGCTGCCCGCGCTGGCCCTGCTGCTGCTGCTGCTCGGAGCGGGGCCCCGAGGCAGCTCCCTGGCCAACCCGGTGCCCGCCGCGCCCCTGTCTGCGCCCGGGCCGTGCGCCGCGCAGCCCTGCCGGAAT
GGGGGTGTGTGCACCTCGCGCCCTGAGCCGGACCCGCAGCACCCGGCCCCCGCCGGCGAGCCTGGCTACAGCTGCACCTGCCCCGCCGGGATCTCCGGCGCCAACTGCCAGCTTGTTGCAGATCCTTGTGCCAGCAACCCTTGTCACCAT
GGCAACTGCAGCAGCAGCAGCAGCAGCAGCAGCGATGGCTACCTCTGCATTTGCAATGAAGGCTATGAAGGTCCCAACTGTGAACAGGCACTTCCCAGTCTCCCAGCCACTGGCTGGACCGAATCCATGGCACCCCGACAGCTTCAGCCT
GTTCCTGCTACTCAGGAGCCTGACAAAATCCTGCCTCGCTCTCAGGCAACGGTGACACTGCCTACCTGGCAGCCGAAAACAGGGCAGAAAGTTGTAGAAATGAAATGGGATCAAGTGGAGGTGATCCCAGATATTGCCTGTGGGAATGCC
AGTTCTAACAGCTCTGCGGGTGGCCGCCTGGTATCCTTTGAAGTGCCACAGAACACCTCAGTCAAGATTCGGCAAGATGCCACTGCCTCACTGATTTTGCTCTGGAAGGTCACGGCCACAGGATTCCAACAGTGCTCCCTCATAGATGGA
CGAAGTGTGACCCCCCTTCAGGCTTCAGGGGGACTGGTCCTCCTGGAGGAGATGCTCGCCTTGGGGAATAATCACTTTATTGGTTTTGTGAATGATTCTGTGACTAAGTCTATTGTGGCTTTGCGCTTAACTCTGGTGGTGAAGGTCAGC
ACCTGTGTGCCGGGGGAGAGTCACGCAAATGACTTGGAGTGTTCAGGAAAAGGAAAATGCACCACGAAGCCGTCAGAGCGTACTGTGAACCGAGAGGAGCTGCTGAAACAGGCGGAGTCTGTGATGCAGGACCTCGGCAGCTCACGGGCC
ATGTTAGAAATCCAGTATGAAAATGAGGTTGGTACAGGTCTTGGGCCTACACTGGAGTTTTATGCGCTTGTATCTCAGGAACTACAGAGAGCTGACTTGGGTCTTTGGAGAGGTGAAGAAGTAACTCTTAGCAATCCAAAAGGGAGCCAA
GAAGGGACCAAGTATATTCAAAACCTCCAGGGCCTGTTTGCGCTTCCCTTTGGTAGGACAGCAAAGCCAGCTCATATCGCAAAGGTTAAGATGAAGTTTCGCTTCTTAGGAAAATTAATGGCCAAGGCTATCATGGATTTCAGATTGGTG
GACCTTCCCCTTGGCTTACCCTTTTATAAATGGATGCTACGGCAAGAAACTTCACTGACATCACACGATTTGTTTGACATCGACCCAGTTGTAGCCAGATCAGTTTATCACCTAGAAGACATTGTCAGACAGAAGAAAAGACTTGAACAA
GATAAATCCCAGACCAAAGAGAGTCTACAGTATGCATTAGAAACCTTGACTATGAATGGCTGCTCAGTTGAAGATCTAGGACTGGATTTCACTCTGCCAGGGTTTCCCAATATCGAACTGAAGAAAGGAGGGAAGGATATACCAGTCACT
ATCCACAATTTAGAGGAGTATCTAAGACTGGTTATATTCTGGGCACTAAATGAAGGCGTTTCTAGGCAATTTGATTCGTTCAGAGATGGATTTGAATCAGTCTTCCCACTCAGTCATCTTCAGTACTTCTACCCGGAGGAACTGGATCAG
CTCCTTTGTGGCAGTAAAGCAGACACTTGGGATGCAAAGACACTGATGGAATGCTGTAGGCCTGATCATGGTTATACTCATGACAGTCGGGCTGTGAAGTTTTTGTTTGAGATTCTCAGTAGTTTTGATAATGAGCAGCAGAGGTTATTT
CTCCAGTTTGTGACTGGTAGCCCAAGATTGCCTGTTGGAGGATTCCGGAGTTTGAATCCACCTTTGACAATTGTCCGAAAGACGTTTGAATCAACAGAAAACCCAGATGACTTCTTGCCCTCTGTAATGACTTGTGTGAACTATCTTAAG
TTGCCGGACTATTCAAGCATTGAGATAATGCGTGAAAAACTGTTGATAGCAGCAAGAGAAGGGCAGCAGTCGTTCCATCTTTCCTGATCATAGCAAGAAATGCAGTGTCTGCCTGTTACAGCAAAAGAAACAAATCATGATTTCTTTTCT
AATGTTATCACCTGAGTCAAGGAAACATGTTACGCCTTCTTGTTGTAGGA

>DNER_TRIP12_ENST00000341772_ENST00000389045_230411662_230650571 length=2450nt
Breakpoint=1128nt
CGCAGCTGCAGGAGGCGCCCGGCCCGGCGGAGCAGCCCTAGCCGCCACCGTCGCTCTCGCAGCTCTCGTCGCCACTGCCACCGCCGCCGCCGTCACTGCGTCCTGGCTCCGGCTCCCGCGCCCTCCCGGCCGGCCATGCAGCCCCGCCGC
GCCCAGGCGCCCGGTGCGCAGCTGCTGCCCGCGCTGGCCCTGCTGCTGCTGCTGCTCGGAGCGGGGCCCCGAGGCAGCTCCCTGGCCAACCCGGTGCCCGCCGCGCCCCTGTCTGCGCCCGGGCCGTGCGCCGCGCAGCCCTGCCGGAAT
GGGGGTGTGTGCACCTCGCGCCCTGAGCCGGACCCGCAGCACCCGGCCCCCGCCGGCGAGCCTGGCTACAGCTGCACCTGCCCCGCCGGGATCTCCGGCGCCAACTGCCAGCTTGTTGCAGATCCTTGTGCCAGCAACCCTTGTCACCAT
GGCAACTGCAGCAGCAGCAGCAGCAGCAGCAGCGATGGCTACCTCTGCATTTGCAATGAAGGCTATGAAGGTCCCAACTGTGAACAGGCACTTCCCAGTCTCCCAGCCACTGGCTGGACCGAATCCATGGCACCCCGACAGCTTCAGCCT
GTTCCTGCTACTCAGGAGCCTGACAAAATCCTGCCTCGCTCTCAGGCAACGGTGACACTGCCTACCTGGCAGCCGAAAACAGGGCAGAAAGTTGTAGAAATGAAATGGGATCAAGTGGAGGTGATCCCAGATATTGCCTGTGGGAATGCC
AGTTCTAACAGCTCTGCGGGTGGCCGCCTGGTATCCTTTGAAGTGCCACAGAACACCTCAGTCAAGATTCGGCAAGATGCCACTGCCTCACTGATTTTGCTCTGGAAGGTCACGGCCACAGGATTCCAACAGTGCTCCCTCATAGATGGA
CGAAGTGTGACCCCCCTTCAGGCTTCAGGGGGACTGGTCCTCCTGGAGGAGATGCTCGCCTTGGGGAATAATCACTTTATTGGTTTTGTGAATGATTCTGTGACTAAGTCTATTGTGGCTTTGCGCTTAACTCTGGTGGTGAAGGTCAGC
ACCTGTGTGCCGGGGGAGAGTCACGCAAATGACTTGGAGTGTTCAGGAAAAGGAAAATGCACCACGAAGCCGTCAGAGCGTACTGTGAACCGAGAGGAGCTGCTGAAACAGGCGGAGTCTGTGATGCAGGACCTCGGCAGCTCACGGGCC
ATGTTAGAAATCCAGTATGAAAATGAGGTTGGTACAGGTCTTGGGCCTACACTGGAGTTTTATGCGCTTGTATCTCAGGAACTACAGAGAGCTGACTTGGGTCTTTGGAGAGGTGAAGAAGTAACTCTTAGCAATCCAAAAGGGAGCCAA
GAAGGGACCAAGTATATTCAAAACCTCCAGGGCCTGTTTGCGCTTCCCTTTGGTAGGACAGCAAAGCCAGCTCATATCGCAAAGGTTAAGATGAAGTTTCGCTTCTTAGGAAAATTAATGGCCAAGGCTATCATGGATTTCAGATTGGTG
GACCTTCCCCTTGGCTTACCCTTTTATAAATGGATGCTACGGCAAGAAACTTCACTGACATCACACGATTTGTTTGACATCGACCCAGTTGTAGCCAGATCAGTTTATCACCTAGAAGACATTGTCAGACAGAAGAAAAGACTTGAACAA
GATAAATCCCAGACCAAAGAGAGTCTACAGTATGCATTAGAAACCTTGACTATGAATGGCTGCTCAGTTGAAGATCTAGGACTGGATTTCACTCTGCCAGGGTTTCCCAATATCGAACTGAAGAAAGGAGGGAAGGATATACCAGTCACT
ATCCACAATTTAGAGGAGTATCTAAGACTGGTTATATTCTGGGCACTAAATGAAGGCGTTTCTAGGCAATTTGATTCGTTCAGAGATGGATTTGAATCAGTCTTCCCACTCAGTCATCTTCAGTACTTCTACCCGGAGGAACTGGATCAG
CTCCTTTGTGGCAGTAAAGCAGACACTTGGGATGCAAAGACACTGATGGAATGCTGTAGGCCTGATCATGGTTATACTCATGACAGTCGGGCTGTGAAGTTTTTGTTTGAGATTCTCAGTAGTTTTGATAATGAGCAGCAGAGGTTATTT
CTCCAGTTTGTGACTGGTAGCCCAAGATTGCCTGTTGGAGGATTCCGGAGTTTGAATCCACCTTTGACAATTGTCCGAAAGACGTTTGAATCAACAGAAAACCCAGATGACTTCTTGCCCTCTGTAATGACTTGTGTGAACTATCTTAAG
TTGCCGGACTATTCAAGCATTGAGATAATGCGTGAAAAACTGTTGATAGCAGCAAGAGAAGGGCAGCAGTCGTTCCATCTTTCCTGATCATAGCAAGAAATGCAGTGTCTGCCTGTTACAGCAAAAGAAACAAATCATGATTTCTTTTCT
AATGTTATCACCTGAGTCAAGGAAACATGTTACGCCTTCTTGTTGTAGGA


check button N-Truncated Transcript (5UTR-3CDS) Sequences

check button C-Truncated Transcript (5CDS-3UTR) Sequences

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Fusion Protein Sequence for DNER_TRIP12

check button In-frame Fusion Protein Sequences.

check button N-Truncated Protein (5UTR-3CDS) Sequences

check button C-Truncated Protein (5CDS-3UTR) Sequences

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Personalized Fusion Protein Sequence for DNER_TRIP12


check button TCGA Kinase/DNA-binding Domain Mutated Fusion Protein Sequences
NumGene GroupDomain LociFusion Protein IDFusion Gene NamePartnerMutated Residue in WT ProteinSeq. LengthMutated Residue in Fusion Protein

check button CCLE Kinase/DNA-binding Domain Mutated Fusion Protein Sequences

NumGene GroupDomain LociFusion Protein IDFusion Gene NamePartnerMutated Residue in WT ProteinSeq. LengthMutated Residue in Fusion Protein

check button TCGA All Mutated Fusion Protein Sequences


Fusion Protein IDSample IDMutated PartnerAAchange in WTSeq. LengthAAchange in Fusion

check button CCLE All Mutated Fusion Protein Sequences


Fusion Protein IDSample IDMutated PartnerAAchange in WTSeq. LengthAAchange in Fusion

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Fusion Gene Exprssed Samples for DNER_TRIP12


check buttonRNA-seq based fusion gene expressed samples.
SourceStudyDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDBBRCATCGA-AN-A0FJ-01ADNER

chr2

230411662-TRIP12

chr2

230650571

-
TCGAfusionPortalBRCATCGA-AN-A0FJ-01ADNER

chr2

230411663-TRIP12

chr2

230650571

-
cBioPortalPOG570_BCGSC_2020MIXED28126DNER

chr2

230406526TRIP12

chr2

230765558

cBioPortalBRCA_TCGA_PAN_CAN_ATLAS_2018BRCATCGA-AN-A0FJ-01DNER

chr2

229546947TRIP12

chr2

229785855


check buttonDNA-seq based fusion gene expressed samples.
SourceStudyDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrandSV type
dbVarestd55BloodSPC_138DNER

chr2

230575494TRIP12

chr2

230752964

DUP
dbVarnstd100Unknown_CellDNER

chr2

230304861TRIP12

chr2

230718969

DUP
dbVarnstd102Unknown_CellDNER

chr2

230421155TRIP12

chr2

230632643

DUP
dbVarnstd102Unknown_CellDNER

chr2

230487853TRIP12

chr2

230709082

DUP
dbVarnstd102Unknown_CellDNER

chr2

230491430TRIP12

chr2

230775587

DUP
dbVarnstd102Unknown_CellDNER

chr2

230491545TRIP12

chr2

230657293

DUP
dbVarnstd102Unknown_CellDNER

chr2

230566834TRIP12

chr2

230689317

DUP
dbVarnstd102Unknown_CellDNER

chr2

230573487TRIP12

chr2

230764226

DUP
dbVarnstd113Unknown_CellUnknown_Set_72805DNER

chr2

230517256TRIP12

chr2

230642134

DUP
dbVarnstd151Unknown_CellDNER

chr2

230450571TRIP12

chr2

230634046

DUP
dbVarnstd200Unknown_CellDNER

chr2

230493935TRIP12

chr2

230657197

DUP
dbVarnstd223Unknown_CellDNER

chr2

230304284TRIP12

chr2

230721273

DUP
dbVarnstd223Unknown_CellDNER

chr2

230493935TRIP12

chr2

230657194

DUP
dbVarnstd229Unknown_CellDNER

chr2

230304284TRIP12

chr2

230721273

DUP
dbVarnstd229Unknown_CellDNER

chr2

230418762TRIP12

chr2

230628922

DUP
dbVarnstd229Unknown_CellDNER

chr2

230449281TRIP12

chr2

230635367

DUP
dbVarnstd229Unknown_CellDNER

chr2

230493935TRIP12

chr2

230657197

DUP
dbVarnstd229Unknown_CellDNER

chr2

230508806TRIP12

chr2

230727479

DUP
dbVarnstd229Unknown_CellDNER

chr2

230530130TRIP12

chr2

230634690

DUP
dbVarnstd229Unknown_CellDNER

chr2

230559885TRIP12

chr2

230667876

DUP


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Related Drugs for DNER_TRIP12


check button PubMed Abstract Search With ['A-B' AND 'drug'], ['A::B' AND 'drug']
* For more details on the Studied, Reported, Approved Drugs targeting this fusion gene, Go to FusionPub.
PMIDFusion Gene NameDrugStudy Title

check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status