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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:BAIAP2-ACTG1 (FusionGDB2 ID:HG10458TG71)

Fusion Gene Summary for BAIAP2-ACTG1

check button Fusion gene summary
Fusion gene informationFusion gene name: BAIAP2-ACTG1
Fusion gene ID: hg10458tg71
HgeneTgene
Gene symbol

BAIAP2

ACTG1

Gene ID

10458

71

Gene nameBAR/IMD domain containing adaptor protein 2actin gamma 1
SynonymsBAP2|FLAF3|IRSP53|WAMLACT|ACTG|DFNA20|DFNA26|HEL-176
Cytomap('BAIAP2')('ACTG1')

17q25.3

17q25.3

Type of geneprotein-codingprotein-coding
Descriptionbrain-specific angiogenesis inhibitor 1-associated protein 2BAI1 associated protein 2IRS-58IRSp53/58WASP and MIM likefas ligand-associated factor 3insulin receptor substrate of 53 kDainsulin receptor substrate p53/p58insulin receptor substrate proactin, cytoplasmic 2cytoskeletal gamma-actinepididymis luminal protein 176
Modification date2020032720200327
UniProtAcc

Q9UQB8

P63261

Ensembl transtripts involved in fusion geneENST00000573894, ENST00000321280, 
ENST00000321300, ENST00000428708, 
ENST00000435091, ENST00000575245, 
ENST00000575712, ENST00000392411, 
ENST00000416299, 
Fusion gene scores* DoF score6 X 6 X 7=25240 X 34 X 12=16320
# samples 1047
** MAII scorelog2(10/252*10)=-1.33342373372519
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(47/16320*10)=-5.11783649029386
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: BAIAP2 [Title/Abstract] AND ACTG1 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointBAIAP2(79009108)-ACTG1(79479386), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID


check button Fusion gene information
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4ESCATCGA-IG-A8O2BAIAP2chr17

79009108

+ACTG1chr17

79479386

-


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Fusion Gene ORF analysis for BAIAP2-ACTG1

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
3UTR-5UTRENST00000573894ENST00000331925BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
3UTR-5UTRENST00000573894ENST00000573283BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
3UTR-5UTRENST00000573894ENST00000575087BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
3UTR-5UTRENST00000573894ENST00000575842BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
5CDS-5UTRENST00000321280ENST00000331925BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
5CDS-5UTRENST00000321280ENST00000573283BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
5CDS-5UTRENST00000321280ENST00000575087BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
5CDS-5UTRENST00000321280ENST00000575842BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
5CDS-5UTRENST00000321300ENST00000331925BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
5CDS-5UTRENST00000321300ENST00000573283BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
5CDS-5UTRENST00000321300ENST00000575087BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
5CDS-5UTRENST00000321300ENST00000575842BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
5CDS-5UTRENST00000428708ENST00000331925BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
5CDS-5UTRENST00000428708ENST00000573283BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
5CDS-5UTRENST00000428708ENST00000575087BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
5CDS-5UTRENST00000428708ENST00000575842BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
5CDS-5UTRENST00000435091ENST00000331925BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
5CDS-5UTRENST00000435091ENST00000573283BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
5CDS-5UTRENST00000435091ENST00000575087BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
5CDS-5UTRENST00000435091ENST00000575842BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
5CDS-5UTRENST00000575245ENST00000331925BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
5CDS-5UTRENST00000575245ENST00000573283BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
5CDS-5UTRENST00000575245ENST00000575087BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
5CDS-5UTRENST00000575245ENST00000575842BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
5CDS-5UTRENST00000575712ENST00000331925BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
5CDS-5UTRENST00000575712ENST00000573283BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
5CDS-5UTRENST00000575712ENST00000575087BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
5CDS-5UTRENST00000575712ENST00000575842BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
5UTR-5UTRENST00000392411ENST00000331925BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
5UTR-5UTRENST00000392411ENST00000573283BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
5UTR-5UTRENST00000392411ENST00000575087BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
5UTR-5UTRENST00000392411ENST00000575842BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
intron-5UTRENST00000416299ENST00000331925BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
intron-5UTRENST00000416299ENST00000573283BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
intron-5UTRENST00000416299ENST00000575087BAIAP2chr17

79009108

+ACTG1chr17

79479386

-
intron-5UTRENST00000416299ENST00000575842BAIAP2chr17

79009108

+ACTG1chr17

79479386

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for BAIAP2-ACTG1


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)


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Fusion Protein Features for BAIAP2-ACTG1


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:79009108/:79479386)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
BAIAP2

Q9UQB8

ACTG1

P63261

FUNCTION: Adapter protein that links membrane-bound small G-proteins to cytoplasmic effector proteins. Necessary for CDC42-mediated reorganization of the actin cytoskeleton and for RAC1-mediated membrane ruffling. Involved in the regulation of the actin cytoskeleton by WASF family members and the Arp2/3 complex. Plays a role in neurite growth. Acts syngeristically with ENAH to promote filipodia formation. Plays a role in the reorganization of the actin cytoskeleton in response to bacterial infection. Participates in actin bundling when associated with EPS8, promoting filopodial protrusions. {ECO:0000269|PubMed:11130076, ECO:0000269|PubMed:11696321, ECO:0000269|PubMed:14752106, ECO:0000269|PubMed:17115031, ECO:0000269|PubMed:19366662}.FUNCTION: Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. {ECO:0000305|PubMed:29581253}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for BAIAP2-ACTG1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for BAIAP2-ACTG1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for BAIAP2-ACTG1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
TgeneACTG1P63261DB09130CopperSmall moleculeApproved|Investigational
TgeneACTG1P63261DB09130CopperSmall moleculeApproved|Investigational

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Related Diseases for BAIAP2-ACTG1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneC3711374Nonsyndromic Deafness18CLINGEN
TgeneC1858172Deafness, Autosomal Dominant 208CTD_human;GENOMICS_ENGLAND;UNIPROT
TgeneC3281235BARAITSER-WINTER SYNDROME 24CLINGEN;CTD_human;GENOMICS_ENGLAND;UNIPROT
TgeneC0001787Osteoporosis, Age-Related1CTD_human
TgeneC0005745Blepharoptosis1GENOMICS_ENGLAND
TgeneC0007097Carcinoma1CTD_human
TgeneC0007621Neoplastic Cell Transformation1CTD_human
TgeneC0009363Congenital ocular coloboma (disorder)1CTD_human
TgeneC0014544Epilepsy1GENOMICS_ENGLAND
TgeneC0024433Macrostomia1GENOMICS_ENGLAND
TgeneC0024667Animal Mammary Neoplasms1CTD_human
TgeneC0024668Mammary Neoplasms, Experimental1CTD_human
TgeneC0029456Osteoporosis1CTD_human
TgeneC0029459Osteoporosis, Senile1CTD_human
TgeneC0033377Ptosis1GENOMICS_ENGLAND
TgeneC0205696Anaplastic carcinoma1CTD_human
TgeneC0205697Carcinoma, Spindle-Cell1CTD_human
TgeneC0205698Undifferentiated carcinoma1CTD_human
TgeneC0205699Carcinomatosis1CTD_human
TgeneC0240583Short upturned nose1GENOMICS_ENGLAND
TgeneC0265541Cranioschisis1CTD_human
TgeneC0266551Congenital coloboma of iris1ORPHANET
TgeneC0376634Craniofacial Abnormalities1CTD_human
TgeneC0497552Congenital neurologic anomalies1CTD_human
TgeneC0751406Post-Traumatic Osteoporosis1CTD_human
TgeneC0857379Abnormality of the pinna1GENOMICS_ENGLAND
TgeneC0948089Acute Coronary Syndrome1CTD_human
TgeneC1257925Mammary Carcinoma, Animal1CTD_human
TgeneC1384666hearing impairment1GENOMICS_ENGLAND
TgeneC1843156Progressive sensorineural hearing impairment1GENOMICS_ENGLAND
TgeneC1844505Pointed chin1GENOMICS_ENGLAND
TgeneC1849340Long palpebral fissure1GENOMICS_ENGLAND
TgeneC1855722Iris Coloboma with Ptosis, Hypertelorism, and Mental Retardation1ORPHANET
TgeneC1865014Long philtrum1GENOMICS_ENGLAND
TgeneC1865017Thin upper lip vermilion1GENOMICS_ENGLAND
TgeneC1868571Highly arched eyebrow1GENOMICS_ENGLAND
TgeneC1970280Hearing loss begins with loss of high frequencies1GENOMICS_ENGLAND
TgeneC1970281Audiogram shows sloping configuration1GENOMICS_ENGLAND
TgeneC1970282Deafness, profound, by 6th decade1GENOMICS_ENGLAND
TgeneC3279369Microphthalmia (in some patients)1GENOMICS_ENGLAND
TgeneC3549665Deafness (in some patients)1GENOMICS_ENGLAND
TgeneC3808883Short neck (in some patients)1GENOMICS_ENGLAND
TgeneC4012410Enlarged ventricles (in some patients)1GENOMICS_ENGLAND
TgeneC4229649Heart defect (in some patients)1GENOMICS_ENGLAND
TgeneC4229650Pterygium colli (in some patients)1GENOMICS_ENGLAND
TgeneC4229651Hypertelorism/telecanthus1GENOMICS_ENGLAND
TgeneC4229652Eye coloboma (in some patients)1GENOMICS_ENGLAND
TgeneC4229653Trigonocephaly/metopic ridge1GENOMICS_ENGLAND
TgeneC4231117Pectus (in some patients)1GENOMICS_ENGLAND
TgeneC4231118Kyphosis/scoliosis (in some patients)1GENOMICS_ENGLAND
TgeneC4231120Prominent nasal root on profile1GENOMICS_ENGLAND
TgeneC4231121Large, squared nose tip1GENOMICS_ENGLAND
TgeneC4231123Retrognathia (in some patients)1GENOMICS_ENGLAND
TgeneC4231124Prominent/full/wide cheeks1GENOMICS_ENGLAND
TgeneC4554007Uveoretinal Coloboma1CTD_human
TgeneC4708599Coloboma of choroid and retina1ORPHANET