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 | Fusion Gene Summary |
| Fusion Gene ORF analysis |
| Fusion Genomic Features |
| Fusion Protein Features |
| Fusion Gene Sequence |
| Fusion Gene PPI analysis |
| Related Drugs |
| Related Diseases |
Fusion gene:BEST3-PTPRR (FusionGDB2 ID:HG144453TG5801) |
Fusion Gene Summary for BEST3-PTPRR |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: BEST3-PTPRR | Fusion gene ID: hg144453tg5801 | Hgene | Tgene | Gene symbol | BEST3 | PTPRR | Gene ID | 144453 | 5801 |
| Gene name | bestrophin 3 | protein tyrosine phosphatase receptor type R | |
| Synonyms | VMD2L3 | EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ | |
| Cytomap | ('BEST3')('PTPRR') 12q15 | 12q15 | |
| Type of gene | protein-coding | protein-coding | |
| Description | bestrophin-3vitelliform macular dystrophy 2-like 3vitelliform macular dystrophy 2-like protein 3 | receptor-type tyrosine-protein phosphatase RCh-1 PTPaseNC-PTPCOM1R-PTP-Rch-1PTPaseprotein tyrosine phosphatase Cr1PTPaseprotein-tyrosine phosphatase NC-PTPCOM1protein-tyrosine phosphatase PCPTP1 | |
| Modification date | 20200313 | 20200313 | |
| UniProtAcc | . | . | |
| Ensembl transtripts involved in fusion gene | ENST00000330891, ENST00000331471, ENST00000476098, ENST00000488961, ENST00000553096, ENST00000266661, ENST00000393365, ENST00000533674, ENST00000551160, | ||
| Fusion gene scores | * DoF score | 4 X 4 X 2=32 | 38 X 16 X 13=7904 |
| # samples | 4 | 42 | |
| ** MAII score | log2(4/32*10)=0.321928094887362 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(42/7904*10)=-4.23412171391856 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: BEST3 [Title/Abstract] AND PTPRR [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint | BEST3(70065208)-PTPRR(71158558), # samples:2 | ||
| Anticipated loss of major functional domain due to fusion event. | BEST3-PTPRR seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. BEST3-PTPRR seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. BEST3-PTPRR seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. BEST3-PTPRR seems lost the major protein functional domain in Tgene partner, which is a IUPHAR drug target due to the frame-shifted ORF. | ||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene breakpoints across BEST3 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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| Fusion gene breakpoints across PTPRR (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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| Fusion gene information * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChimerDB4 | SARC | TCGA-3B-A9HS-01A | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
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Fusion Gene ORF analysis for BEST3-PTPRR |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5CDS-intron | ENST00000330891 | ENST00000342084 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000330891 | ENST00000378778 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000330891 | ENST00000440835 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000330891 | ENST00000537619 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000330891 | ENST00000549308 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000331471 | ENST00000342084 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000331471 | ENST00000378778 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000331471 | ENST00000440835 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000331471 | ENST00000537619 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000331471 | ENST00000549308 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000476098 | ENST00000342084 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000476098 | ENST00000378778 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000476098 | ENST00000440835 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000476098 | ENST00000537619 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000476098 | ENST00000549308 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000488961 | ENST00000342084 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000488961 | ENST00000378778 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000488961 | ENST00000440835 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000488961 | ENST00000537619 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000488961 | ENST00000549308 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000553096 | ENST00000342084 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000553096 | ENST00000378778 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000553096 | ENST00000440835 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000553096 | ENST00000537619 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| 5CDS-intron | ENST00000553096 | ENST00000549308 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| Frame-shift | ENST00000488961 | ENST00000283228 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| In-frame | ENST00000330891 | ENST00000283228 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| In-frame | ENST00000331471 | ENST00000283228 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| In-frame | ENST00000476098 | ENST00000283228 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| In-frame | ENST00000553096 | ENST00000283228 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-3CDS | ENST00000266661 | ENST00000283228 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-3CDS | ENST00000393365 | ENST00000283228 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-3CDS | ENST00000533674 | ENST00000283228 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-3CDS | ENST00000551160 | ENST00000283228 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000266661 | ENST00000342084 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000266661 | ENST00000378778 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000266661 | ENST00000440835 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000266661 | ENST00000537619 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000266661 | ENST00000549308 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000393365 | ENST00000342084 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000393365 | ENST00000378778 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000393365 | ENST00000440835 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000393365 | ENST00000537619 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000393365 | ENST00000549308 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000533674 | ENST00000342084 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000533674 | ENST00000378778 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000533674 | ENST00000440835 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000533674 | ENST00000537619 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000533674 | ENST00000549308 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000551160 | ENST00000342084 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000551160 | ENST00000378778 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000551160 | ENST00000440835 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000551160 | ENST00000537619 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| intron-intron | ENST00000551160 | ENST00000549308 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - |
| ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| ENST00000331471 | BEST3 | chr12 | 70065208 | - | ENST00000283228 | PTPRR | chr12 | 71158558 | - | 3991 | 1272 | 1233 | 2888 | 551 |
| ENST00000330891 | BEST3 | chr12 | 70065208 | - | ENST00000283228 | PTPRR | chr12 | 71158558 | - | 4046 | 1327 | 1288 | 2943 | 551 |
| ENST00000553096 | BEST3 | chr12 | 70065208 | - | ENST00000283228 | PTPRR | chr12 | 71158558 | - | 3653 | 934 | 895 | 2550 | 551 |
| ENST00000476098 | BEST3 | chr12 | 70065208 | - | ENST00000283228 | PTPRR | chr12 | 71158558 | - | 3511 | 792 | 753 | 2408 | 551 |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
| ENST00000331471 | ENST00000283228 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - | 0.000325147 | 0.9996749 |
| ENST00000330891 | ENST00000283228 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - | 0.000308917 | 0.9996911 |
| ENST00000553096 | ENST00000283228 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - | 0.00033723 | 0.99966276 |
| ENST00000476098 | ENST00000283228 | BEST3 | chr12 | 70065208 | - | PTPRR | chr12 | 71158558 | - | 0.000346627 | 0.99965334 |
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Fusion Genomic Features for BEST3-PTPRR |
| FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
| Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
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Fusion Protein Features for BEST3-PTPRR |
| Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr12:70065208/chr12:71158558) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| . | . |
| FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000330891 | - | 9 | 10 | 229_249 | 366 | 669.0 | Intramembrane | Ontology_term=ECO:0000255 |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000331471 | - | 9 | 10 | 229_249 | 366 | 399.0 | Intramembrane | Ontology_term=ECO:0000255 |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000330891 | - | 9 | 10 | 1_25 | 366 | 669.0 | Topological domain | Cytoplasmic |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000330891 | - | 9 | 10 | 200_228 | 366 | 669.0 | Topological domain | Extracellular |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000330891 | - | 9 | 10 | 250_270 | 366 | 669.0 | Topological domain | Extracellular |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000330891 | - | 9 | 10 | 47_70 | 366 | 669.0 | Topological domain | Extracellular |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000330891 | - | 9 | 10 | 92_178 | 366 | 669.0 | Topological domain | Cytoplasmic |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000331471 | - | 9 | 10 | 1_25 | 366 | 399.0 | Topological domain | Cytoplasmic |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000331471 | - | 9 | 10 | 200_228 | 366 | 399.0 | Topological domain | Extracellular |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000331471 | - | 9 | 10 | 250_270 | 366 | 399.0 | Topological domain | Extracellular |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000331471 | - | 9 | 10 | 47_70 | 366 | 399.0 | Topological domain | Extracellular |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000331471 | - | 9 | 10 | 92_178 | 366 | 399.0 | Topological domain | Cytoplasmic |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000488961 | - | 5 | 6 | 1_25 | 153 | 456.0 | Topological domain | Cytoplasmic |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000488961 | - | 5 | 6 | 47_70 | 153 | 456.0 | Topological domain | Extracellular |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000330891 | - | 9 | 10 | 179_199 | 366 | 669.0 | Transmembrane | Helical |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000330891 | - | 9 | 10 | 26_46 | 366 | 669.0 | Transmembrane | Helical |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000330891 | - | 9 | 10 | 271_291 | 366 | 669.0 | Transmembrane | Helical |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000330891 | - | 9 | 10 | 71_91 | 366 | 669.0 | Transmembrane | Helical |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000331471 | - | 9 | 10 | 179_199 | 366 | 399.0 | Transmembrane | Helical |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000331471 | - | 9 | 10 | 26_46 | 366 | 399.0 | Transmembrane | Helical |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000331471 | - | 9 | 10 | 271_291 | 366 | 399.0 | Transmembrane | Helical |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000331471 | - | 9 | 10 | 71_91 | 366 | 399.0 | Transmembrane | Helical |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000488961 | - | 5 | 6 | 26_46 | 153 | 456.0 | Transmembrane | Helical |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000488961 | - | 5 | 6 | 71_91 | 153 | 456.0 | Transmembrane | Helical |
| Tgene | PTPRR | chr12:70065208 | chr12:71158558 | ENST00000283228 | 1 | 14 | 393_647 | 119 | 658.0 | Domain | Tyrosine-protein phosphatase | |
| Tgene | PTPRR | chr12:70065208 | chr12:71158558 | ENST00000342084 | 0 | 13 | 393_647 | 7 | 546.0 | Domain | Tyrosine-protein phosphatase | |
| Tgene | PTPRR | chr12:70065208 | chr12:71158558 | ENST00000378778 | 0 | 11 | 393_647 | 0 | 452.0 | Domain | Tyrosine-protein phosphatase | |
| Tgene | PTPRR | chr12:70065208 | chr12:71158558 | ENST00000440835 | 0 | 10 | 393_647 | 0 | 413.0 | Domain | Tyrosine-protein phosphatase | |
| Tgene | PTPRR | chr12:70065208 | chr12:71158558 | ENST00000549308 | 0 | 11 | 393_647 | 0 | 413.0 | Domain | Tyrosine-protein phosphatase | |
| Tgene | PTPRR | chr12:70065208 | chr12:71158558 | ENST00000283228 | 1 | 14 | 588_594 | 119 | 658.0 | Region | Substrate binding | |
| Tgene | PTPRR | chr12:70065208 | chr12:71158558 | ENST00000342084 | 0 | 13 | 588_594 | 7 | 546.0 | Region | Substrate binding | |
| Tgene | PTPRR | chr12:70065208 | chr12:71158558 | ENST00000378778 | 0 | 11 | 588_594 | 0 | 452.0 | Region | Substrate binding | |
| Tgene | PTPRR | chr12:70065208 | chr12:71158558 | ENST00000440835 | 0 | 10 | 588_594 | 0 | 413.0 | Region | Substrate binding | |
| Tgene | PTPRR | chr12:70065208 | chr12:71158558 | ENST00000549308 | 0 | 11 | 588_594 | 0 | 413.0 | Region | Substrate binding | |
| Tgene | PTPRR | chr12:70065208 | chr12:71158558 | ENST00000283228 | 1 | 14 | 249_657 | 119 | 658.0 | Topological domain | Cytoplasmic | |
| Tgene | PTPRR | chr12:70065208 | chr12:71158558 | ENST00000342084 | 0 | 13 | 22_227 | 7 | 546.0 | Topological domain | Extracellular | |
| Tgene | PTPRR | chr12:70065208 | chr12:71158558 | ENST00000342084 | 0 | 13 | 249_657 | 7 | 546.0 | Topological domain | Cytoplasmic | |
| Tgene | PTPRR | chr12:70065208 | chr12:71158558 | ENST00000378778 | 0 | 11 | 22_227 | 0 | 452.0 | Topological domain | Extracellular | |
| Tgene | PTPRR | chr12:70065208 | chr12:71158558 | ENST00000378778 | 0 | 11 | 249_657 | 0 | 452.0 | Topological domain | Cytoplasmic | |
| Tgene | PTPRR | chr12:70065208 | chr12:71158558 | ENST00000440835 | 0 | 10 | 22_227 | 0 | 413.0 | Topological domain | Extracellular | |
| Tgene | PTPRR | chr12:70065208 | chr12:71158558 | ENST00000440835 | 0 | 10 | 249_657 | 0 | 413.0 | Topological domain | Cytoplasmic | |
| Tgene | PTPRR | chr12:70065208 | chr12:71158558 | ENST00000549308 | 0 | 11 | 22_227 | 0 | 413.0 | Topological domain | Extracellular | |
| Tgene | PTPRR | chr12:70065208 | chr12:71158558 | ENST00000549308 | 0 | 11 | 249_657 | 0 | 413.0 | Topological domain | Cytoplasmic | |
| Tgene | PTPRR | chr12:70065208 | chr12:71158558 | ENST00000283228 | 1 | 14 | 228_248 | 119 | 658.0 | Transmembrane | Helical | |
| Tgene | PTPRR | chr12:70065208 | chr12:71158558 | ENST00000342084 | 0 | 13 | 228_248 | 7 | 546.0 | Transmembrane | Helical | |
| Tgene | PTPRR | chr12:70065208 | chr12:71158558 | ENST00000378778 | 0 | 11 | 228_248 | 0 | 452.0 | Transmembrane | Helical | |
| Tgene | PTPRR | chr12:70065208 | chr12:71158558 | ENST00000440835 | 0 | 10 | 228_248 | 0 | 413.0 | Transmembrane | Helical | |
| Tgene | PTPRR | chr12:70065208 | chr12:71158558 | ENST00000549308 | 0 | 11 | 228_248 | 0 | 413.0 | Transmembrane | Helical |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000266661 | - | 1 | 3 | 229_249 | 0 | 73.0 | Intramembrane | Ontology_term=ECO:0000255 |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000393365 | - | 1 | 5 | 229_249 | 0 | 73.0 | Intramembrane | Ontology_term=ECO:0000255 |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000488961 | - | 5 | 6 | 229_249 | 153 | 456.0 | Intramembrane | Ontology_term=ECO:0000255 |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000551160 | - | 1 | 4 | 229_249 | 0 | 73.0 | Intramembrane | Ontology_term=ECO:0000255 |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000266661 | - | 1 | 3 | 1_25 | 0 | 73.0 | Topological domain | Cytoplasmic |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000266661 | - | 1 | 3 | 200_228 | 0 | 73.0 | Topological domain | Extracellular |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000266661 | - | 1 | 3 | 250_270 | 0 | 73.0 | Topological domain | Extracellular |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000266661 | - | 1 | 3 | 292_668 | 0 | 73.0 | Topological domain | Cytoplasmic |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000266661 | - | 1 | 3 | 47_70 | 0 | 73.0 | Topological domain | Extracellular |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000266661 | - | 1 | 3 | 92_178 | 0 | 73.0 | Topological domain | Cytoplasmic |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000330891 | - | 9 | 10 | 292_668 | 366 | 669.0 | Topological domain | Cytoplasmic |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000331471 | - | 9 | 10 | 292_668 | 366 | 399.0 | Topological domain | Cytoplasmic |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000393365 | - | 1 | 5 | 1_25 | 0 | 73.0 | Topological domain | Cytoplasmic |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000393365 | - | 1 | 5 | 200_228 | 0 | 73.0 | Topological domain | Extracellular |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000393365 | - | 1 | 5 | 250_270 | 0 | 73.0 | Topological domain | Extracellular |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000393365 | - | 1 | 5 | 292_668 | 0 | 73.0 | Topological domain | Cytoplasmic |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000393365 | - | 1 | 5 | 47_70 | 0 | 73.0 | Topological domain | Extracellular |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000393365 | - | 1 | 5 | 92_178 | 0 | 73.0 | Topological domain | Cytoplasmic |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000488961 | - | 5 | 6 | 200_228 | 153 | 456.0 | Topological domain | Extracellular |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000488961 | - | 5 | 6 | 250_270 | 153 | 456.0 | Topological domain | Extracellular |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000488961 | - | 5 | 6 | 292_668 | 153 | 456.0 | Topological domain | Cytoplasmic |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000488961 | - | 5 | 6 | 92_178 | 153 | 456.0 | Topological domain | Cytoplasmic |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000551160 | - | 1 | 4 | 1_25 | 0 | 73.0 | Topological domain | Cytoplasmic |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000551160 | - | 1 | 4 | 200_228 | 0 | 73.0 | Topological domain | Extracellular |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000551160 | - | 1 | 4 | 250_270 | 0 | 73.0 | Topological domain | Extracellular |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000551160 | - | 1 | 4 | 292_668 | 0 | 73.0 | Topological domain | Cytoplasmic |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000551160 | - | 1 | 4 | 47_70 | 0 | 73.0 | Topological domain | Extracellular |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000551160 | - | 1 | 4 | 92_178 | 0 | 73.0 | Topological domain | Cytoplasmic |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000266661 | - | 1 | 3 | 179_199 | 0 | 73.0 | Transmembrane | Helical |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000266661 | - | 1 | 3 | 26_46 | 0 | 73.0 | Transmembrane | Helical |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000266661 | - | 1 | 3 | 271_291 | 0 | 73.0 | Transmembrane | Helical |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000266661 | - | 1 | 3 | 71_91 | 0 | 73.0 | Transmembrane | Helical |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000393365 | - | 1 | 5 | 179_199 | 0 | 73.0 | Transmembrane | Helical |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000393365 | - | 1 | 5 | 26_46 | 0 | 73.0 | Transmembrane | Helical |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000393365 | - | 1 | 5 | 271_291 | 0 | 73.0 | Transmembrane | Helical |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000393365 | - | 1 | 5 | 71_91 | 0 | 73.0 | Transmembrane | Helical |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000488961 | - | 5 | 6 | 179_199 | 153 | 456.0 | Transmembrane | Helical |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000488961 | - | 5 | 6 | 271_291 | 153 | 456.0 | Transmembrane | Helical |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000551160 | - | 1 | 4 | 179_199 | 0 | 73.0 | Transmembrane | Helical |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000551160 | - | 1 | 4 | 26_46 | 0 | 73.0 | Transmembrane | Helical |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000551160 | - | 1 | 4 | 271_291 | 0 | 73.0 | Transmembrane | Helical |
| Hgene | BEST3 | chr12:70065208 | chr12:71158558 | ENST00000551160 | - | 1 | 4 | 71_91 | 0 | 73.0 | Transmembrane | Helical |
| Tgene | PTPRR | chr12:70065208 | chr12:71158558 | ENST00000283228 | 1 | 14 | 22_227 | 119 | 658.0 | Topological domain | Extracellular |
Top |
Fusion Gene Sequence for BEST3-PTPRR |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
| >9604_9604_1_BEST3-PTPRR_BEST3_chr12_70065208_ENST00000330891_PTPRR_chr12_71158558_ENST00000283228_length(transcript)=4046nt_BP=1327nt ATAAACAGGCCTCTACAAGTGGAAAAACATTTAACCCCTGTTCTTGTCACACTCTGGGTCCTCTCAGTGGCCAGAGAACAGAAAGAAAAT CTGACTGTGCACGAGCGAAGGGTGACACCGGGCGTGCAGCACCGACCTGAAGGCACCTCTTCGGGGGAGCCCGAAATTTGAAGATTCTCT TTCCTGTCGGAGACTACAAACCAAATAAATAGAAAAAACTATCCAAGATGACTGTCACTTACTCCAGTAAAGTAGCAAATGCAACTTTTT TTGGATTTCATAGGTTACTCCTCAAGTGGAGAGGCAGCATCTACAAACTACTGTACAGGGAATTTATTGTTTTTGCTGTTCTTTATACAG CAATAAGTTTGGTATACAGATTGTTACTTACAGGAGTCCAAAAACGTTACTTTGAAAAATTATCAATTTACTGTGACAGATATGCTGAAC AAATTCCAGTAACCTTTGTGCTTGGGTTTTATGTTACTCTGGTAGTGAACCGATGGTGGAACCAGTTTGTGAATTTGCCCTGGCCAGACA GGCTAATGTTCCTCATCTCTAGCAGTGTTCACGGAAGCGACGAGCACGGGCGCCTGCTTAGAAGGACGCTGATGCGCTACGTCAATCTCA CCTCCCTGCTCATCTTTCGCTCGGTGAGCACTGCTGTGTACAAAAGATTTCCCACAATGGACCACGTGGTTGAAGCAGGTTTTATGACAA CAGATGAAAGGAAATTATTCAACCACCTCAAGTCTCCTCATCTGAAATATTGGGTTCCATTCATCTGGTTTGGAAATCTTGCAACTAAAG CCCGGAATGAAGGTAGAATCAGAGACAGTGTTGATCTGCAATCATTGATGACTGAAATGAATCGATACCGCTCTTGGTGCAGCCTCTTAT TCGGTTATGACTGGGTTGGGATTCCGCTGGTTTACACCCAGGTTGTCACTCTTGCTGTCTATACCTTCTTCTTTGCGTGCCTGATTGGAC GCCAGTTTTTGGATCCCACCAAAGGCTACGCAGGGCATGACTTGGATCTTTACATTCCCATCTTCACCCTCCTACAATTCTTCTTCTATG CAGGATGGCTTAAGGTAGCAGAGCAGCTTATCAACCCTTTTGGAGAAGATGATGATGATTTTGAAACTAACTGGTGCATTGACAGAAATT TGCAGGTCTCTCTTTTAGCTGTGGACGAAATGCACATGAGCTTACCCAAGATGAAGAAGGACATTTACTGGGACGATTCTGCTGCTCGCC CACCATACACATTGGCAGCTGCTGACTACTGCATACCCTCATTTCTGGGGTCAACAGTCCAGATGGGACACTGCAAATGGATGTAAACAA GCTGAACATAACCTTGCTTCGGATCTTCCGCCAAGGAGTGGCTGCAGCTTTAGGACTCTTACCCCAGCAAGTGCACATCAATCGCCTCAT TGGAAAGAAGAACAGTATTGAACTGTTTGTGTCTCCCATAAACCGAAAAACAGGAATTTCTGATGCTCTGCCCTCTGAGGAAGTTCTTCG TTCACTTAATATCAATGTTTTGCATCAAAGTTTATCCCAGTTTGGAATTACAGAAGTCTCTCCTGAGAAAAATGTTTTACAAGGGCAGCA TGAAGCGGACAAAATCTGGAGCAAAGAAGGATTTTATGCTGTTGTCATTTTTCTCAGCATCTTTGTTATTATAGTAACGTGTTTGATGAT TCTTTACAGATTAAAAGAAAGATTTCAGCTTTCCTTAAGACAAGACAAAGAGAAAAACCAGGAGATCCACCTATCGCCCATCACATTACA GCCAGCACTGTCCGAGGCAAAGACAGTCCACAGCATGGTCCAACCTGAGCAGGCCCCAAAGGTACTGAATGTTGTCGTGGACCCTCAAGG CCGAGGTGCTCCTGAGATCAAAGCTACCACCGCTACCTCTGTTTGCCCTTCTCCTTTCAAAATGAAGCCCATAGGACTTCAAGAGAGAAG AGGGTCCAACGTATCTCTTACATTGGACATGAGTAGCTTGGGGAACATTGAACCCTTTGTGTCTATACCAACACCACGGGAGAAGGTAGC AATGGAGTATCTGCAGTCAGCCAGCCGAATTCTCACAAGGTCTCAGCTGAGGGACGTCGTGGCAAGTTCACATTTACTCCAAAGTGAATT CATGGAAATACCAATGAACTTTGTGGATCCCAAAGAAATTGATATTCCGCGTCATGGAACTAAAAATCGCTATAAGACCATTTTACCAAA TCCCCTCAGCAGAGTGTGTTTAAGACCAAAAAATGTAACCGATTCATTGAGCACCTACATTAATGCTAATTATATTAGGGGCTACAGTGG CAAGGAGAAAGCCTTCATTGCCACGCAGGGCCCCATGATCAACACCGTGGATGATTTCTGGCAGATGGTTTGGCAGGAAGACAGCCCTGT GATTGTTATGATCACAAAACTCAAAGAAAAAAATGAGAAATGTGTGCTATACTGGCCGGAAAAGAGAGGGATATATGGAAAAGTTGAGGT TCTGGTTATCAGTGTAAATGAATGTGATAACTACACCATTCGAAACCTTGTCTTAAAGCAAGGAAGCCACACCCAACATGTGAAGCATTA CTGGTACACCTCATGGCCTGATCACAAGACTCCAGACAGTGCCCAGCCCCTCCTACAGCTCATGCTGGATGTAGAAGAAGACAGACTTGC TTCCCAGGGCCGAGGGCCTGTGGTTGTCCACTGCAGTGCAGGAATAGGTAGAACAGGGTGTTTTATTGCTACATCCATTGGCTGTCAACA GCTGAAAGAAGAAGGAGTTGTGGATGCACTAAGCATTGTCTGCCAGCTTCGTATGGATAGAGGTGGAATGGTGCAAACCAGTGAGCAGTA TGAATTTGTGCACCATGCTCTGTGCCTGTATGAGAGCAGACTTTCAGCAGAGACTGTCCAGTGAGTCATTGAAGACTTGTCAGACCATCA ATCTCTTGGGGTGATTAATCAAATTACCCACCCAAGGCTTCTAGAAGGAGCTTCCTGCAATGGAAGGAAGGAGAAGCTCTGAAGCCCATG TATGGCATGGATTGTGGAAGACTGGGCAACATATTTAAGATTTCCAGCTCCTTGTGTATATGAATGCATTTGTAAGCATCCCCCAAATTA TTCTGAAGGTTTTTTGATGATGGAGGTATGATAGGTTTATCACACAGCCTAAGGCAGATTTTGTTTTGTCTGTACTGACTCTATCTGCCA CACAGAATGTATGTATGTAATATTCAGTAATAAATGTCATCAGGTGATGACTGGATGAGCTGCTGAAGACATTCGTATTATGTGTTAGAT GCTTTAATGTTTGCAAAATCTGTCTTGTGAATGGACTGTCAGCTGTTAAACTGTTCCTGTTTTGAAGTGCTATTACCTTTCTCAGTTACC AGAATCTTGCTGCTAAAGTTGCAAGTGATTGATAATGGATTTTTAACAGAGAAGTCTTTGTTTTTGAAAAACAAAAATCAAAAACAGTAA CTATTTTATATGGAAATGTGTCTTGATAATATTACCTATTAAATGTGTATTTATAGTCCCTCCTATCAAACAATTACAGAGCACAATGAT TGTCATTGGGTATATATGTATTTACTCTCTATTATTGGGCATAAAGGTGGCTTCTGCTCCAGAACTCTATCCACTGTATTTCCACATCGT GAGTCATTTTACTTTAAAAGGGAAAAACAAATTTGTAGCAACTCTGAAGTATCAAGAGTTTTAACTACTTGTCTCTCTTTTGCTAAGAAG GGATTTTTGAATATGCTATCTACCTGGAATCTCTCTCTCAACAAAAGGTATATGCCTTCAGGAATGATATAATCTGTCCCATTTTCGAGG CTCCTTATAAGGACATTTCCATGTATGTCCTTACATTTCTGAAAGCTTTCAATCTTCAAGAGACAAAAAAAATTAAAATAACTACCCTCA >9604_9604_1_BEST3-PTPRR_BEST3_chr12_70065208_ENST00000330891_PTPRR_chr12_71158558_ENST00000283228_length(amino acids)=551AA_BP=13 MHTLISGVNSPDGTLQMDVNKLNITLLRIFRQGVAAALGLLPQQVHINRLIGKKNSIELFVSPINRKTGISDALPSEEVLRSLNINVLHQ SLSQFGITEVSPEKNVLQGQHEADKIWSKEGFYAVVIFLSIFVIIVTCLMILYRLKERFQLSLRQDKEKNQEIHLSPITLQPALSEAKTV HSMVQPEQAPKVLNVVVDPQGRGAPEIKATTATSVCPSPFKMKPIGLQERRGSNVSLTLDMSSLGNIEPFVSIPTPREKVAMEYLQSASR ILTRSQLRDVVASSHLLQSEFMEIPMNFVDPKEIDIPRHGTKNRYKTILPNPLSRVCLRPKNVTDSLSTYINANYIRGYSGKEKAFIATQ GPMINTVDDFWQMVWQEDSPVIVMITKLKEKNEKCVLYWPEKRGIYGKVEVLVISVNECDNYTIRNLVLKQGSHTQHVKHYWYTSWPDHK TPDSAQPLLQLMLDVEEDRLASQGRGPVVVHCSAGIGRTGCFIATSIGCQQLKEEGVVDALSIVCQLRMDRGGMVQTSEQYEFVHHALCL -------------------------------------------------------------- >9604_9604_2_BEST3-PTPRR_BEST3_chr12_70065208_ENST00000331471_PTPRR_chr12_71158558_ENST00000283228_length(transcript)=3991nt_BP=1272nt GGGTCCTCTCAGTGGCCAGAGAACAGAAAGAAAATCTGACTGTGCACGAGCGAAGGGTGACACCGGGCGTGCAGCACCGACCTGAAGGCA CCTCTTCGGGGGAGCCCGAAATTTGAAGATTCTCTTTCCTGTCGGAGACTACAAACCAAATAAATAGAAAAAACTATCCAAGATGACTGT CACTTACTCCAGTAAAGTAGCAAATGCAACTTTTTTTGGATTTCATAGGTTACTCCTCAAGTGGAGAGGCAGCATCTACAAACTACTGTA CAGGGAATTTATTGTTTTTGCTGTTCTTTATACAGCAATAAGTTTGGTATACAGATTGTTACTTACAGGAGTCCAAAAACGTTACTTTGA AAAATTATCAATTTACTGTGACAGATATGCTGAACAAATTCCAGTAACCTTTGTGCTTGGGTTTTATGTTACTCTGGTAGTGAACCGATG GTGGAACCAGTTTGTGAATTTGCCCTGGCCAGACAGGCTAATGTTCCTCATCTCTAGCAGTGTTCACGGAAGCGACGAGCACGGGCGCCT GCTTAGAAGGACGCTGATGCGCTACGTCAATCTCACCTCCCTGCTCATCTTTCGCTCGGTGAGCACTGCTGTGTACAAAAGATTTCCCAC AATGGACCACGTGGTTGAAGCAGGTTTTATGACAACAGATGAAAGGAAATTATTCAACCACCTCAAGTCTCCTCATCTGAAATATTGGGT TCCATTCATCTGGTTTGGAAATCTTGCAACTAAAGCCCGGAATGAAGGTAGAATCAGAGACAGTGTTGATCTGCAATCATTGATGACTGA AATGAATCGATACCGCTCTTGGTGCAGCCTCTTATTCGGTTATGACTGGGTTGGGATTCCGCTGGTTTACACCCAGGTTGTCACTCTTGC TGTCTATACCTTCTTCTTTGCGTGCCTGATTGGACGCCAGTTTTTGGATCCCACCAAAGGCTACGCAGGGCATGACTTGGATCTTTACAT TCCCATCTTCACCCTCCTACAATTCTTCTTCTATGCAGGATGGCTTAAGGTAGCAGAGCAGCTTATCAACCCTTTTGGAGAAGATGATGA TGATTTTGAAACTAACTGGTGCATTGACAGAAATTTGCAGGTCTCTCTTTTAGCTGTGGACGAAATGCACATGAGCTTACCCAAGATGAA GAAGGACATTTACTGGGACGATTCTGCTGCTCGCCCACCATACACATTGGCAGCTGCTGACTACTGCATACCCTCATTTCTGGGGTCAAC AGTCCAGATGGGACACTGCAAATGGATGTAAACAAGCTGAACATAACCTTGCTTCGGATCTTCCGCCAAGGAGTGGCTGCAGCTTTAGGA CTCTTACCCCAGCAAGTGCACATCAATCGCCTCATTGGAAAGAAGAACAGTATTGAACTGTTTGTGTCTCCCATAAACCGAAAAACAGGA ATTTCTGATGCTCTGCCCTCTGAGGAAGTTCTTCGTTCACTTAATATCAATGTTTTGCATCAAAGTTTATCCCAGTTTGGAATTACAGAA GTCTCTCCTGAGAAAAATGTTTTACAAGGGCAGCATGAAGCGGACAAAATCTGGAGCAAAGAAGGATTTTATGCTGTTGTCATTTTTCTC AGCATCTTTGTTATTATAGTAACGTGTTTGATGATTCTTTACAGATTAAAAGAAAGATTTCAGCTTTCCTTAAGACAAGACAAAGAGAAA AACCAGGAGATCCACCTATCGCCCATCACATTACAGCCAGCACTGTCCGAGGCAAAGACAGTCCACAGCATGGTCCAACCTGAGCAGGCC CCAAAGGTACTGAATGTTGTCGTGGACCCTCAAGGCCGAGGTGCTCCTGAGATCAAAGCTACCACCGCTACCTCTGTTTGCCCTTCTCCT TTCAAAATGAAGCCCATAGGACTTCAAGAGAGAAGAGGGTCCAACGTATCTCTTACATTGGACATGAGTAGCTTGGGGAACATTGAACCC TTTGTGTCTATACCAACACCACGGGAGAAGGTAGCAATGGAGTATCTGCAGTCAGCCAGCCGAATTCTCACAAGGTCTCAGCTGAGGGAC GTCGTGGCAAGTTCACATTTACTCCAAAGTGAATTCATGGAAATACCAATGAACTTTGTGGATCCCAAAGAAATTGATATTCCGCGTCAT GGAACTAAAAATCGCTATAAGACCATTTTACCAAATCCCCTCAGCAGAGTGTGTTTAAGACCAAAAAATGTAACCGATTCATTGAGCACC TACATTAATGCTAATTATATTAGGGGCTACAGTGGCAAGGAGAAAGCCTTCATTGCCACGCAGGGCCCCATGATCAACACCGTGGATGAT TTCTGGCAGATGGTTTGGCAGGAAGACAGCCCTGTGATTGTTATGATCACAAAACTCAAAGAAAAAAATGAGAAATGTGTGCTATACTGG CCGGAAAAGAGAGGGATATATGGAAAAGTTGAGGTTCTGGTTATCAGTGTAAATGAATGTGATAACTACACCATTCGAAACCTTGTCTTA AAGCAAGGAAGCCACACCCAACATGTGAAGCATTACTGGTACACCTCATGGCCTGATCACAAGACTCCAGACAGTGCCCAGCCCCTCCTA CAGCTCATGCTGGATGTAGAAGAAGACAGACTTGCTTCCCAGGGCCGAGGGCCTGTGGTTGTCCACTGCAGTGCAGGAATAGGTAGAACA GGGTGTTTTATTGCTACATCCATTGGCTGTCAACAGCTGAAAGAAGAAGGAGTTGTGGATGCACTAAGCATTGTCTGCCAGCTTCGTATG GATAGAGGTGGAATGGTGCAAACCAGTGAGCAGTATGAATTTGTGCACCATGCTCTGTGCCTGTATGAGAGCAGACTTTCAGCAGAGACT GTCCAGTGAGTCATTGAAGACTTGTCAGACCATCAATCTCTTGGGGTGATTAATCAAATTACCCACCCAAGGCTTCTAGAAGGAGCTTCC TGCAATGGAAGGAAGGAGAAGCTCTGAAGCCCATGTATGGCATGGATTGTGGAAGACTGGGCAACATATTTAAGATTTCCAGCTCCTTGT GTATATGAATGCATTTGTAAGCATCCCCCAAATTATTCTGAAGGTTTTTTGATGATGGAGGTATGATAGGTTTATCACACAGCCTAAGGC AGATTTTGTTTTGTCTGTACTGACTCTATCTGCCACACAGAATGTATGTATGTAATATTCAGTAATAAATGTCATCAGGTGATGACTGGA TGAGCTGCTGAAGACATTCGTATTATGTGTTAGATGCTTTAATGTTTGCAAAATCTGTCTTGTGAATGGACTGTCAGCTGTTAAACTGTT CCTGTTTTGAAGTGCTATTACCTTTCTCAGTTACCAGAATCTTGCTGCTAAAGTTGCAAGTGATTGATAATGGATTTTTAACAGAGAAGT CTTTGTTTTTGAAAAACAAAAATCAAAAACAGTAACTATTTTATATGGAAATGTGTCTTGATAATATTACCTATTAAATGTGTATTTATA GTCCCTCCTATCAAACAATTACAGAGCACAATGATTGTCATTGGGTATATATGTATTTACTCTCTATTATTGGGCATAAAGGTGGCTTCT GCTCCAGAACTCTATCCACTGTATTTCCACATCGTGAGTCATTTTACTTTAAAAGGGAAAAACAAATTTGTAGCAACTCTGAAGTATCAA GAGTTTTAACTACTTGTCTCTCTTTTGCTAAGAAGGGATTTTTGAATATGCTATCTACCTGGAATCTCTCTCTCAACAAAAGGTATATGC CTTCAGGAATGATATAATCTGTCCCATTTTCGAGGCTCCTTATAAGGACATTTCCATGTATGTCCTTACATTTCTGAAAGCTTTCAATCT TCAAGAGACAAAAAAAATTAAAATAACTACCCTCAGCAAACACTAGCTGTTCTGCTCATATATGAATTTTTAATGCAGCAATGTTGACTT >9604_9604_2_BEST3-PTPRR_BEST3_chr12_70065208_ENST00000331471_PTPRR_chr12_71158558_ENST00000283228_length(amino acids)=551AA_BP=13 MHTLISGVNSPDGTLQMDVNKLNITLLRIFRQGVAAALGLLPQQVHINRLIGKKNSIELFVSPINRKTGISDALPSEEVLRSLNINVLHQ SLSQFGITEVSPEKNVLQGQHEADKIWSKEGFYAVVIFLSIFVIIVTCLMILYRLKERFQLSLRQDKEKNQEIHLSPITLQPALSEAKTV HSMVQPEQAPKVLNVVVDPQGRGAPEIKATTATSVCPSPFKMKPIGLQERRGSNVSLTLDMSSLGNIEPFVSIPTPREKVAMEYLQSASR ILTRSQLRDVVASSHLLQSEFMEIPMNFVDPKEIDIPRHGTKNRYKTILPNPLSRVCLRPKNVTDSLSTYINANYIRGYSGKEKAFIATQ GPMINTVDDFWQMVWQEDSPVIVMITKLKEKNEKCVLYWPEKRGIYGKVEVLVISVNECDNYTIRNLVLKQGSHTQHVKHYWYTSWPDHK TPDSAQPLLQLMLDVEEDRLASQGRGPVVVHCSAGIGRTGCFIATSIGCQQLKEEGVVDALSIVCQLRMDRGGMVQTSEQYEFVHHALCL -------------------------------------------------------------- >9604_9604_3_BEST3-PTPRR_BEST3_chr12_70065208_ENST00000476098_PTPRR_chr12_71158558_ENST00000283228_length(transcript)=3511nt_BP=792nt AGTGGCCAGAGAACAGAAAGAAAATCTGACTGTGCACGAGCGAAGGGTGACACCGGGCGTGCAGCACCGACCTGAAGGCACCTCTTCGGG GGAGCCCGAAATTTGAAGATTCTCTTTCCTGTCGGAGACTACAAACCAAATAAATAGGGTTTTATGTTACTCTGGTAGTGAACCGATGGT GGAACCAGTTTGTGAATTTGCCCTGGCCAGACAGGCTAATGTTCCTCATCTCTAGCAGTGTTCACGGAAGCGACGAGCACGGGCGCCTGC TTAGAAGGACGCTGATGCGCTACGTCAATCTCACCTCCCTGCTCATCTTTCGCTCGGTTTTATGACAACAGATGAAAGGAAATTATTCAA CCACCTCAAGTCTCCTCATCTGAAATATTGGGTTCCATTCATCTGGTTTGGAAATCTTGCAACTAAAGCCCGGAATGAAGGTAGAATCAG AGACAGTGTTGATCTGCAATCATTGATGACTGAAATGAATCGATACCGCTCTTGGTGCAGCCTCTTATTCGGTTATGACTGGGTTGGGAT TCCGCTGGTTTACACCCAGGTAGCAGAGCAGCTTATCAACCCTTTTGGAGAAGATGATGATGATTTTGAAACTAACTGGTGCATTGACAG AAATTTGCAGGTCTCTCTTTTAGCTGTGGACGAAATGCACATGAGCTTACCCAAGATGAAGAAGGACATTTACTGGGACGATTCTGCTGC TCGCCCACCATACACATTGGCAGCTGCTGACTACTGCATACCCTCATTTCTGGGGTCAACAGTCCAGATGGGACACTGCAAATGGATGTA AACAAGCTGAACATAACCTTGCTTCGGATCTTCCGCCAAGGAGTGGCTGCAGCTTTAGGACTCTTACCCCAGCAAGTGCACATCAATCGC CTCATTGGAAAGAAGAACAGTATTGAACTGTTTGTGTCTCCCATAAACCGAAAAACAGGAATTTCTGATGCTCTGCCCTCTGAGGAAGTT CTTCGTTCACTTAATATCAATGTTTTGCATCAAAGTTTATCCCAGTTTGGAATTACAGAAGTCTCTCCTGAGAAAAATGTTTTACAAGGG CAGCATGAAGCGGACAAAATCTGGAGCAAAGAAGGATTTTATGCTGTTGTCATTTTTCTCAGCATCTTTGTTATTATAGTAACGTGTTTG ATGATTCTTTACAGATTAAAAGAAAGATTTCAGCTTTCCTTAAGACAAGACAAAGAGAAAAACCAGGAGATCCACCTATCGCCCATCACA TTACAGCCAGCACTGTCCGAGGCAAAGACAGTCCACAGCATGGTCCAACCTGAGCAGGCCCCAAAGGTACTGAATGTTGTCGTGGACCCT CAAGGCCGAGGTGCTCCTGAGATCAAAGCTACCACCGCTACCTCTGTTTGCCCTTCTCCTTTCAAAATGAAGCCCATAGGACTTCAAGAG AGAAGAGGGTCCAACGTATCTCTTACATTGGACATGAGTAGCTTGGGGAACATTGAACCCTTTGTGTCTATACCAACACCACGGGAGAAG GTAGCAATGGAGTATCTGCAGTCAGCCAGCCGAATTCTCACAAGGTCTCAGCTGAGGGACGTCGTGGCAAGTTCACATTTACTCCAAAGT GAATTCATGGAAATACCAATGAACTTTGTGGATCCCAAAGAAATTGATATTCCGCGTCATGGAACTAAAAATCGCTATAAGACCATTTTA CCAAATCCCCTCAGCAGAGTGTGTTTAAGACCAAAAAATGTAACCGATTCATTGAGCACCTACATTAATGCTAATTATATTAGGGGCTAC AGTGGCAAGGAGAAAGCCTTCATTGCCACGCAGGGCCCCATGATCAACACCGTGGATGATTTCTGGCAGATGGTTTGGCAGGAAGACAGC CCTGTGATTGTTATGATCACAAAACTCAAAGAAAAAAATGAGAAATGTGTGCTATACTGGCCGGAAAAGAGAGGGATATATGGAAAAGTT GAGGTTCTGGTTATCAGTGTAAATGAATGTGATAACTACACCATTCGAAACCTTGTCTTAAAGCAAGGAAGCCACACCCAACATGTGAAG CATTACTGGTACACCTCATGGCCTGATCACAAGACTCCAGACAGTGCCCAGCCCCTCCTACAGCTCATGCTGGATGTAGAAGAAGACAGA CTTGCTTCCCAGGGCCGAGGGCCTGTGGTTGTCCACTGCAGTGCAGGAATAGGTAGAACAGGGTGTTTTATTGCTACATCCATTGGCTGT CAACAGCTGAAAGAAGAAGGAGTTGTGGATGCACTAAGCATTGTCTGCCAGCTTCGTATGGATAGAGGTGGAATGGTGCAAACCAGTGAG CAGTATGAATTTGTGCACCATGCTCTGTGCCTGTATGAGAGCAGACTTTCAGCAGAGACTGTCCAGTGAGTCATTGAAGACTTGTCAGAC CATCAATCTCTTGGGGTGATTAATCAAATTACCCACCCAAGGCTTCTAGAAGGAGCTTCCTGCAATGGAAGGAAGGAGAAGCTCTGAAGC CCATGTATGGCATGGATTGTGGAAGACTGGGCAACATATTTAAGATTTCCAGCTCCTTGTGTATATGAATGCATTTGTAAGCATCCCCCA AATTATTCTGAAGGTTTTTTGATGATGGAGGTATGATAGGTTTATCACACAGCCTAAGGCAGATTTTGTTTTGTCTGTACTGACTCTATC TGCCACACAGAATGTATGTATGTAATATTCAGTAATAAATGTCATCAGGTGATGACTGGATGAGCTGCTGAAGACATTCGTATTATGTGT TAGATGCTTTAATGTTTGCAAAATCTGTCTTGTGAATGGACTGTCAGCTGTTAAACTGTTCCTGTTTTGAAGTGCTATTACCTTTCTCAG TTACCAGAATCTTGCTGCTAAAGTTGCAAGTGATTGATAATGGATTTTTAACAGAGAAGTCTTTGTTTTTGAAAAACAAAAATCAAAAAC AGTAACTATTTTATATGGAAATGTGTCTTGATAATATTACCTATTAAATGTGTATTTATAGTCCCTCCTATCAAACAATTACAGAGCACA ATGATTGTCATTGGGTATATATGTATTTACTCTCTATTATTGGGCATAAAGGTGGCTTCTGCTCCAGAACTCTATCCACTGTATTTCCAC ATCGTGAGTCATTTTACTTTAAAAGGGAAAAACAAATTTGTAGCAACTCTGAAGTATCAAGAGTTTTAACTACTTGTCTCTCTTTTGCTA AGAAGGGATTTTTGAATATGCTATCTACCTGGAATCTCTCTCTCAACAAAAGGTATATGCCTTCAGGAATGATATAATCTGTCCCATTTT CGAGGCTCCTTATAAGGACATTTCCATGTATGTCCTTACATTTCTGAAAGCTTTCAATCTTCAAGAGACAAAAAAAATTAAAATAACTAC CCTCAGCAAACACTAGCTGTTCTGCTCATATATGAATTTTTAATGCAGCAATGTTGACTTTGTTTCATACTGCCAATAAACTCTTAATAC >9604_9604_3_BEST3-PTPRR_BEST3_chr12_70065208_ENST00000476098_PTPRR_chr12_71158558_ENST00000283228_length(amino acids)=551AA_BP=13 MHTLISGVNSPDGTLQMDVNKLNITLLRIFRQGVAAALGLLPQQVHINRLIGKKNSIELFVSPINRKTGISDALPSEEVLRSLNINVLHQ SLSQFGITEVSPEKNVLQGQHEADKIWSKEGFYAVVIFLSIFVIIVTCLMILYRLKERFQLSLRQDKEKNQEIHLSPITLQPALSEAKTV HSMVQPEQAPKVLNVVVDPQGRGAPEIKATTATSVCPSPFKMKPIGLQERRGSNVSLTLDMSSLGNIEPFVSIPTPREKVAMEYLQSASR ILTRSQLRDVVASSHLLQSEFMEIPMNFVDPKEIDIPRHGTKNRYKTILPNPLSRVCLRPKNVTDSLSTYINANYIRGYSGKEKAFIATQ GPMINTVDDFWQMVWQEDSPVIVMITKLKEKNEKCVLYWPEKRGIYGKVEVLVISVNECDNYTIRNLVLKQGSHTQHVKHYWYTSWPDHK TPDSAQPLLQLMLDVEEDRLASQGRGPVVVHCSAGIGRTGCFIATSIGCQQLKEEGVVDALSIVCQLRMDRGGMVQTSEQYEFVHHALCL -------------------------------------------------------------- >9604_9604_4_BEST3-PTPRR_BEST3_chr12_70065208_ENST00000553096_PTPRR_chr12_71158558_ENST00000283228_length(transcript)=3653nt_BP=934nt CCGACCTGAAGGCACCTCTTCGGGGGAGCCCGAAATTTGAAGATTCTCTTTCCTGTCGGAGACTACAAACCAAATAAATAGGGTTTTATG TTACTCTGGTAGTGAACCGATGGTGGAACCAGTTTGTGAATTTGCCCTGGCCAGACAGGCTAATGTTCCTCATCTCTAGCAGTGTTCACG GAAGCGACGAGCACGGGCGCCTGCTTAGAAGGACGCTGATGCGCTACGTCAATCTCACCTCCCTGCTCATCTTTCGCTCGGTGAGCACTG CTGTGTACAAAAGATTTCCCACAATGGACCACGTGGTTGAAGCAGGTTTTATGACAACAGATGAAAGGAAATTATTCAACCACCTCAAGT CTCCTCATCTGAAATATTGGGTTCCATTCATCTGGTTTGGAAATCTTGCAACTAAAGCCCGGAATGAAGGTAGAATCAGAGACAGTGTTG ATCTGCAATCATTGATGACTGAAATGAATCGATACCGCTCTTGGTGCAGCCTCTTATTCGGTTATGACTGGGTTGGGATTCCGCTGGTTT ACACCCAGGTTGTCACTCTTGCTGTCTATACCTTCTTCTTTGCGTGCCTGATTGGACGCCAGTTTTTGGATCCCACCAAAGGCTACGCAG GGCATGACTTGGATCTTTACATTCCCATCTTCACCCTCCTACAATTCTTCTTCTATGCAGGATGGCTTAAGGTAGCAGAGCAGCTTATCA ACCCTTTTGGAGAAGATGATGATGATTTTGAAACTAACTGGTGCATTGACAGAAATTTGCAGGTCTCTCTTTTAGCTGTGGACGAAATGC ACATGAGCTTACCCAAGATGAAGAAGGACATTTACTGGGACGATTCTGCTGCTCGCCCACCATACACATTGGCAGCTGCTGACTACTGCA TACCCTCATTTCTGGGGTCAACAGTCCAGATGGGACACTGCAAATGGATGTAAACAAGCTGAACATAACCTTGCTTCGGATCTTCCGCCA AGGAGTGGCTGCAGCTTTAGGACTCTTACCCCAGCAAGTGCACATCAATCGCCTCATTGGAAAGAAGAACAGTATTGAACTGTTTGTGTC TCCCATAAACCGAAAAACAGGAATTTCTGATGCTCTGCCCTCTGAGGAAGTTCTTCGTTCACTTAATATCAATGTTTTGCATCAAAGTTT ATCCCAGTTTGGAATTACAGAAGTCTCTCCTGAGAAAAATGTTTTACAAGGGCAGCATGAAGCGGACAAAATCTGGAGCAAAGAAGGATT TTATGCTGTTGTCATTTTTCTCAGCATCTTTGTTATTATAGTAACGTGTTTGATGATTCTTTACAGATTAAAAGAAAGATTTCAGCTTTC CTTAAGACAAGACAAAGAGAAAAACCAGGAGATCCACCTATCGCCCATCACATTACAGCCAGCACTGTCCGAGGCAAAGACAGTCCACAG CATGGTCCAACCTGAGCAGGCCCCAAAGGTACTGAATGTTGTCGTGGACCCTCAAGGCCGAGGTGCTCCTGAGATCAAAGCTACCACCGC TACCTCTGTTTGCCCTTCTCCTTTCAAAATGAAGCCCATAGGACTTCAAGAGAGAAGAGGGTCCAACGTATCTCTTACATTGGACATGAG TAGCTTGGGGAACATTGAACCCTTTGTGTCTATACCAACACCACGGGAGAAGGTAGCAATGGAGTATCTGCAGTCAGCCAGCCGAATTCT CACAAGGTCTCAGCTGAGGGACGTCGTGGCAAGTTCACATTTACTCCAAAGTGAATTCATGGAAATACCAATGAACTTTGTGGATCCCAA AGAAATTGATATTCCGCGTCATGGAACTAAAAATCGCTATAAGACCATTTTACCAAATCCCCTCAGCAGAGTGTGTTTAAGACCAAAAAA TGTAACCGATTCATTGAGCACCTACATTAATGCTAATTATATTAGGGGCTACAGTGGCAAGGAGAAAGCCTTCATTGCCACGCAGGGCCC CATGATCAACACCGTGGATGATTTCTGGCAGATGGTTTGGCAGGAAGACAGCCCTGTGATTGTTATGATCACAAAACTCAAAGAAAAAAA TGAGAAATGTGTGCTATACTGGCCGGAAAAGAGAGGGATATATGGAAAAGTTGAGGTTCTGGTTATCAGTGTAAATGAATGTGATAACTA CACCATTCGAAACCTTGTCTTAAAGCAAGGAAGCCACACCCAACATGTGAAGCATTACTGGTACACCTCATGGCCTGATCACAAGACTCC AGACAGTGCCCAGCCCCTCCTACAGCTCATGCTGGATGTAGAAGAAGACAGACTTGCTTCCCAGGGCCGAGGGCCTGTGGTTGTCCACTG CAGTGCAGGAATAGGTAGAACAGGGTGTTTTATTGCTACATCCATTGGCTGTCAACAGCTGAAAGAAGAAGGAGTTGTGGATGCACTAAG CATTGTCTGCCAGCTTCGTATGGATAGAGGTGGAATGGTGCAAACCAGTGAGCAGTATGAATTTGTGCACCATGCTCTGTGCCTGTATGA GAGCAGACTTTCAGCAGAGACTGTCCAGTGAGTCATTGAAGACTTGTCAGACCATCAATCTCTTGGGGTGATTAATCAAATTACCCACCC AAGGCTTCTAGAAGGAGCTTCCTGCAATGGAAGGAAGGAGAAGCTCTGAAGCCCATGTATGGCATGGATTGTGGAAGACTGGGCAACATA TTTAAGATTTCCAGCTCCTTGTGTATATGAATGCATTTGTAAGCATCCCCCAAATTATTCTGAAGGTTTTTTGATGATGGAGGTATGATA GGTTTATCACACAGCCTAAGGCAGATTTTGTTTTGTCTGTACTGACTCTATCTGCCACACAGAATGTATGTATGTAATATTCAGTAATAA ATGTCATCAGGTGATGACTGGATGAGCTGCTGAAGACATTCGTATTATGTGTTAGATGCTTTAATGTTTGCAAAATCTGTCTTGTGAATG GACTGTCAGCTGTTAAACTGTTCCTGTTTTGAAGTGCTATTACCTTTCTCAGTTACCAGAATCTTGCTGCTAAAGTTGCAAGTGATTGAT AATGGATTTTTAACAGAGAAGTCTTTGTTTTTGAAAAACAAAAATCAAAAACAGTAACTATTTTATATGGAAATGTGTCTTGATAATATT ACCTATTAAATGTGTATTTATAGTCCCTCCTATCAAACAATTACAGAGCACAATGATTGTCATTGGGTATATATGTATTTACTCTCTATT ATTGGGCATAAAGGTGGCTTCTGCTCCAGAACTCTATCCACTGTATTTCCACATCGTGAGTCATTTTACTTTAAAAGGGAAAAACAAATT TGTAGCAACTCTGAAGTATCAAGAGTTTTAACTACTTGTCTCTCTTTTGCTAAGAAGGGATTTTTGAATATGCTATCTACCTGGAATCTC TCTCTCAACAAAAGGTATATGCCTTCAGGAATGATATAATCTGTCCCATTTTCGAGGCTCCTTATAAGGACATTTCCATGTATGTCCTTA CATTTCTGAAAGCTTTCAATCTTCAAGAGACAAAAAAAATTAAAATAACTACCCTCAGCAAACACTAGCTGTTCTGCTCATATATGAATT >9604_9604_4_BEST3-PTPRR_BEST3_chr12_70065208_ENST00000553096_PTPRR_chr12_71158558_ENST00000283228_length(amino acids)=551AA_BP=13 MHTLISGVNSPDGTLQMDVNKLNITLLRIFRQGVAAALGLLPQQVHINRLIGKKNSIELFVSPINRKTGISDALPSEEVLRSLNINVLHQ SLSQFGITEVSPEKNVLQGQHEADKIWSKEGFYAVVIFLSIFVIIVTCLMILYRLKERFQLSLRQDKEKNQEIHLSPITLQPALSEAKTV HSMVQPEQAPKVLNVVVDPQGRGAPEIKATTATSVCPSPFKMKPIGLQERRGSNVSLTLDMSSLGNIEPFVSIPTPREKVAMEYLQSASR ILTRSQLRDVVASSHLLQSEFMEIPMNFVDPKEIDIPRHGTKNRYKTILPNPLSRVCLRPKNVTDSLSTYINANYIRGYSGKEKAFIATQ GPMINTVDDFWQMVWQEDSPVIVMITKLKEKNEKCVLYWPEKRGIYGKVEVLVISVNECDNYTIRNLVLKQGSHTQHVKHYWYTSWPDHK TPDSAQPLLQLMLDVEEDRLASQGRGPVVVHCSAGIGRTGCFIATSIGCQQLKEEGVVDALSIVCQLRMDRGGMVQTSEQYEFVHHALCL -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for BEST3-PTPRR |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for BEST3-PTPRR |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for BEST3-PTPRR |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | BEST3 | C0004238 | Atrial Fibrillation | 1 | CTD_human |
| Hgene | BEST3 | C0235480 | Paroxysmal atrial fibrillation | 1 | CTD_human |
| Hgene | BEST3 | C2585653 | Persistent atrial fibrillation | 1 | CTD_human |
| Hgene | BEST3 | C3468561 | familial atrial fibrillation | 1 | CTD_human |
| Tgene | C0041696 | Unipolar Depression | 1 | PSYGENET | |
| Tgene | C1269683 | Major Depressive Disorder | 1 | PSYGENET |
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