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Fusion Gene Summary | |
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Fusion Gene Sequence | |
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Fusion gene:GPR125-DNER (FusionGDB2 ID:HG166647TG92737) |
Fusion Gene Summary for GPR125-DNER |
Fusion gene summary |
Fusion gene information | Fusion gene name: GPR125-DNER | Fusion gene ID: hg166647tg92737 | Hgene | Tgene | Gene symbol | GPR125 | DNER | Gene ID | 166647 | 92737 |
Gene name | adhesion G protein-coupled receptor A3 | delta/notch like EGF repeat containing | |
Synonyms | GPR125|PGR21|TEM5L | UNQ26|bet | |
Cytomap | ('GPR125')('DNER') 4p15.2 | 2q36.3 | |
Type of gene | protein-coding | protein-coding | |
Description | adhesion G protein-coupled receptor A3G-protein coupled receptor 125probable G-protein coupled receptor 125 | delta and Notch-like epidermal growth factor-related receptorH_NH0150O02.1WUGSC:H_NH0150O02.1delta-notch-like EGF repeat-containing transmembrane | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000334304, ENST00000502482, ENST00000508133, ENST00000282943, | ||
Fusion gene scores | * DoF score | 2 X 2 X 2=8 | 5 X 3 X 4=60 |
# samples | 2 | 7 | |
** MAII score | log2(2/8*10)=1.32192809488736 | log2(7/60*10)=0.222392421336448 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: GPR125 [Title/Abstract] AND DNER [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | GPR125(22425814)-DNER(230456604), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | GPR125-DNER seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. GPR125-DNER seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. GPR125-DNER seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. GPR125-DNER seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene breakpoints across GPR125 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across DNER (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | GBM | TCGA-12-0618-01A | GPR125 | chr4 | 22425814 | - | DNER | chr2 | 230456604 | - |
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Fusion Gene ORF analysis for GPR125-DNER |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-intron | ENST00000334304 | ENST00000482831 | GPR125 | chr4 | 22425814 | - | DNER | chr2 | 230456604 | - |
5CDS-intron | ENST00000502482 | ENST00000482831 | GPR125 | chr4 | 22425814 | - | DNER | chr2 | 230456604 | - |
5CDS-intron | ENST00000508133 | ENST00000482831 | GPR125 | chr4 | 22425814 | - | DNER | chr2 | 230456604 | - |
5UTR-3CDS | ENST00000282943 | ENST00000341772 | GPR125 | chr4 | 22425814 | - | DNER | chr2 | 230456604 | - |
5UTR-intron | ENST00000282943 | ENST00000482831 | GPR125 | chr4 | 22425814 | - | DNER | chr2 | 230456604 | - |
In-frame | ENST00000334304 | ENST00000341772 | GPR125 | chr4 | 22425814 | - | DNER | chr2 | 230456604 | - |
In-frame | ENST00000502482 | ENST00000341772 | GPR125 | chr4 | 22425814 | - | DNER | chr2 | 230456604 | - |
In-frame | ENST00000508133 | ENST00000341772 | GPR125 | chr4 | 22425814 | - | DNER | chr2 | 230456604 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000334304 | GPR125 | chr4 | 22425814 | - | ENST00000341772 | DNER | chr2 | 230456604 | - | 4724 | 1875 | 270 | 3812 | 1180 |
ENST00000508133 | GPR125 | chr4 | 22425814 | - | ENST00000341772 | DNER | chr2 | 230456604 | - | 3804 | 955 | 28 | 2892 | 954 |
ENST00000502482 | GPR125 | chr4 | 22425814 | - | ENST00000341772 | DNER | chr2 | 230456604 | - | 4667 | 1818 | 213 | 3755 | 1180 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000334304 | ENST00000341772 | GPR125 | chr4 | 22425814 | - | DNER | chr2 | 230456604 | - | 0.000451521 | 0.9995485 |
ENST00000508133 | ENST00000341772 | GPR125 | chr4 | 22425814 | - | DNER | chr2 | 230456604 | - | 0.000268022 | 0.99973196 |
ENST00000502482 | ENST00000341772 | GPR125 | chr4 | 22425814 | - | DNER | chr2 | 230456604 | - | 0.000422233 | 0.9995778 |
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Fusion Genomic Features for GPR125-DNER |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
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Fusion Protein Features for GPR125-DNER |
Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr4:22425814/chr2:230456604) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | . |
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000334304 | - | 11 | 19 | 187_237 | 535 | 1322.0 | Domain | Note=LRRCT |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000334304 | - | 11 | 19 | 242_340 | 535 | 1322.0 | Domain | Note=Ig-like |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000502482 | - | 11 | 12 | 187_237 | 535 | 617.0 | Domain | Note=LRRCT |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000502482 | - | 11 | 12 | 242_340 | 535 | 617.0 | Domain | Note=Ig-like |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000508133 | - | 6 | 8 | 187_237 | 309 | 382.0 | Domain | Note=LRRCT |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000334304 | - | 11 | 19 | 106_127 | 535 | 1322.0 | Repeat | Note=LRR 2 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000334304 | - | 11 | 19 | 130_151 | 535 | 1322.0 | Repeat | Note=LRR 3 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000334304 | - | 11 | 19 | 154_175 | 535 | 1322.0 | Repeat | Note=LRR 4 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000334304 | - | 11 | 19 | 82_103 | 535 | 1322.0 | Repeat | Note=LRR 1 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000502482 | - | 11 | 12 | 106_127 | 535 | 617.0 | Repeat | Note=LRR 2 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000502482 | - | 11 | 12 | 130_151 | 535 | 617.0 | Repeat | Note=LRR 3 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000502482 | - | 11 | 12 | 154_175 | 535 | 617.0 | Repeat | Note=LRR 4 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000502482 | - | 11 | 12 | 82_103 | 535 | 617.0 | Repeat | Note=LRR 1 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000508133 | - | 6 | 8 | 106_127 | 309 | 382.0 | Repeat | Note=LRR 2 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000508133 | - | 6 | 8 | 130_151 | 309 | 382.0 | Repeat | Note=LRR 3 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000508133 | - | 6 | 8 | 154_175 | 309 | 382.0 | Repeat | Note=LRR 4 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000508133 | - | 6 | 8 | 82_103 | 309 | 382.0 | Repeat | Note=LRR 1 |
Tgene | DNER | chr4:22425814 | chr2:230456604 | ENST00000341772 | 0 | 13 | 309_348 | 92 | 738.0 | Domain | EGF-like 3 | |
Tgene | DNER | chr4:22425814 | chr2:230456604 | ENST00000341772 | 0 | 13 | 349_390 | 92 | 738.0 | Domain | EGF-like 4 | |
Tgene | DNER | chr4:22425814 | chr2:230456604 | ENST00000341772 | 0 | 13 | 392_428 | 92 | 738.0 | Domain | EGF-like 5 | |
Tgene | DNER | chr4:22425814 | chr2:230456604 | ENST00000341772 | 0 | 13 | 430_466 | 92 | 738.0 | Domain | EGF-like 6 | |
Tgene | DNER | chr4:22425814 | chr2:230456604 | ENST00000341772 | 0 | 13 | 468_503 | 92 | 738.0 | Domain | EGF-like 7 | |
Tgene | DNER | chr4:22425814 | chr2:230456604 | ENST00000341772 | 0 | 13 | 505_541 | 92 | 738.0 | Domain | EGF-like 8%3B calcium-binding | |
Tgene | DNER | chr4:22425814 | chr2:230456604 | ENST00000341772 | 0 | 13 | 543_579 | 92 | 738.0 | Domain | EGF-like 9 | |
Tgene | DNER | chr4:22425814 | chr2:230456604 | ENST00000341772 | 0 | 13 | 546_568 | 92 | 738.0 | Domain | Note=Follistatin-like | |
Tgene | DNER | chr4:22425814 | chr2:230456604 | ENST00000341772 | 0 | 13 | 581_617 | 92 | 738.0 | Domain | EGF-like 10%3B calcium-binding | |
Tgene | DNER | chr4:22425814 | chr2:230456604 | ENST00000341772 | 0 | 13 | 94_133 | 92 | 738.0 | Domain | EGF-like 2 | |
Tgene | DNER | chr4:22425814 | chr2:230456604 | ENST00000341772 | 0 | 13 | 662_737 | 92 | 738.0 | Topological domain | Cytoplasmic | |
Tgene | DNER | chr4:22425814 | chr2:230456604 | ENST00000341772 | 0 | 13 | 641_661 | 92 | 738.0 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000334304 | - | 11 | 19 | 698_749 | 535 | 1322.0 | Domain | GPS |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000502482 | - | 11 | 12 | 698_749 | 535 | 617.0 | Domain | GPS |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000508133 | - | 6 | 8 | 242_340 | 309 | 382.0 | Domain | Note=Ig-like |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000508133 | - | 6 | 8 | 698_749 | 309 | 382.0 | Domain | GPS |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000334304 | - | 11 | 19 | 1319_1321 | 535 | 1322.0 | Motif | PDZ-binding |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000502482 | - | 11 | 12 | 1319_1321 | 535 | 617.0 | Motif | PDZ-binding |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000508133 | - | 6 | 8 | 1319_1321 | 309 | 382.0 | Motif | PDZ-binding |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000334304 | - | 11 | 19 | 594_620 | 535 | 1322.0 | Repeat | Note=LRR 5 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000502482 | - | 11 | 12 | 594_620 | 535 | 617.0 | Repeat | Note=LRR 5 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000508133 | - | 6 | 8 | 594_620 | 309 | 382.0 | Repeat | Note=LRR 5 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000334304 | - | 11 | 19 | 1018_1024 | 535 | 1322.0 | Topological domain | Extracellular |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000334304 | - | 11 | 19 | 1046_1321 | 535 | 1322.0 | Topological domain | Cytoplasmic |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000334304 | - | 11 | 19 | 34_761 | 535 | 1322.0 | Topological domain | Extracellular |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000334304 | - | 11 | 19 | 783_796 | 535 | 1322.0 | Topological domain | Cytoplasmic |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000334304 | - | 11 | 19 | 818_826 | 535 | 1322.0 | Topological domain | Extracellular |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000334304 | - | 11 | 19 | 848_876 | 535 | 1322.0 | Topological domain | Cytoplasmic |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000334304 | - | 11 | 19 | 898_919 | 535 | 1322.0 | Topological domain | Extracellular |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000334304 | - | 11 | 19 | 941_996 | 535 | 1322.0 | Topological domain | Cytoplasmic |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000502482 | - | 11 | 12 | 1018_1024 | 535 | 617.0 | Topological domain | Extracellular |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000502482 | - | 11 | 12 | 1046_1321 | 535 | 617.0 | Topological domain | Cytoplasmic |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000502482 | - | 11 | 12 | 34_761 | 535 | 617.0 | Topological domain | Extracellular |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000502482 | - | 11 | 12 | 783_796 | 535 | 617.0 | Topological domain | Cytoplasmic |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000502482 | - | 11 | 12 | 818_826 | 535 | 617.0 | Topological domain | Extracellular |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000502482 | - | 11 | 12 | 848_876 | 535 | 617.0 | Topological domain | Cytoplasmic |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000502482 | - | 11 | 12 | 898_919 | 535 | 617.0 | Topological domain | Extracellular |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000502482 | - | 11 | 12 | 941_996 | 535 | 617.0 | Topological domain | Cytoplasmic |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000508133 | - | 6 | 8 | 1018_1024 | 309 | 382.0 | Topological domain | Extracellular |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000508133 | - | 6 | 8 | 1046_1321 | 309 | 382.0 | Topological domain | Cytoplasmic |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000508133 | - | 6 | 8 | 34_761 | 309 | 382.0 | Topological domain | Extracellular |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000508133 | - | 6 | 8 | 783_796 | 309 | 382.0 | Topological domain | Cytoplasmic |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000508133 | - | 6 | 8 | 818_826 | 309 | 382.0 | Topological domain | Extracellular |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000508133 | - | 6 | 8 | 848_876 | 309 | 382.0 | Topological domain | Cytoplasmic |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000508133 | - | 6 | 8 | 898_919 | 309 | 382.0 | Topological domain | Extracellular |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000508133 | - | 6 | 8 | 941_996 | 309 | 382.0 | Topological domain | Cytoplasmic |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000334304 | - | 11 | 19 | 1025_1045 | 535 | 1322.0 | Transmembrane | Helical%3B Name%3D7 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000334304 | - | 11 | 19 | 762_782 | 535 | 1322.0 | Transmembrane | Helical%3B Name%3D1 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000334304 | - | 11 | 19 | 797_817 | 535 | 1322.0 | Transmembrane | Helical%3B Name%3D2 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000334304 | - | 11 | 19 | 827_847 | 535 | 1322.0 | Transmembrane | Helical%3B Name%3D3 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000334304 | - | 11 | 19 | 877_897 | 535 | 1322.0 | Transmembrane | Helical%3B Name%3D4 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000334304 | - | 11 | 19 | 920_940 | 535 | 1322.0 | Transmembrane | Helical%3B Name%3D5 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000334304 | - | 11 | 19 | 997_1017 | 535 | 1322.0 | Transmembrane | Helical%3B Name%3D6 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000502482 | - | 11 | 12 | 1025_1045 | 535 | 617.0 | Transmembrane | Helical%3B Name%3D7 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000502482 | - | 11 | 12 | 762_782 | 535 | 617.0 | Transmembrane | Helical%3B Name%3D1 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000502482 | - | 11 | 12 | 797_817 | 535 | 617.0 | Transmembrane | Helical%3B Name%3D2 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000502482 | - | 11 | 12 | 827_847 | 535 | 617.0 | Transmembrane | Helical%3B Name%3D3 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000502482 | - | 11 | 12 | 877_897 | 535 | 617.0 | Transmembrane | Helical%3B Name%3D4 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000502482 | - | 11 | 12 | 920_940 | 535 | 617.0 | Transmembrane | Helical%3B Name%3D5 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000502482 | - | 11 | 12 | 997_1017 | 535 | 617.0 | Transmembrane | Helical%3B Name%3D6 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000508133 | - | 6 | 8 | 1025_1045 | 309 | 382.0 | Transmembrane | Helical%3B Name%3D7 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000508133 | - | 6 | 8 | 762_782 | 309 | 382.0 | Transmembrane | Helical%3B Name%3D1 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000508133 | - | 6 | 8 | 797_817 | 309 | 382.0 | Transmembrane | Helical%3B Name%3D2 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000508133 | - | 6 | 8 | 827_847 | 309 | 382.0 | Transmembrane | Helical%3B Name%3D3 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000508133 | - | 6 | 8 | 877_897 | 309 | 382.0 | Transmembrane | Helical%3B Name%3D4 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000508133 | - | 6 | 8 | 920_940 | 309 | 382.0 | Transmembrane | Helical%3B Name%3D5 |
Hgene | GPR125 | chr4:22425814 | chr2:230456604 | ENST00000508133 | - | 6 | 8 | 997_1017 | 309 | 382.0 | Transmembrane | Helical%3B Name%3D6 |
Tgene | DNER | chr4:22425814 | chr2:230456604 | ENST00000341772 | 0 | 13 | 44_92 | 92 | 738.0 | Domain | EGF-like 1 | |
Tgene | DNER | chr4:22425814 | chr2:230456604 | ENST00000341772 | 0 | 13 | 35_640 | 92 | 738.0 | Topological domain | Extracellular |
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Fusion Gene Sequence for GPR125-DNER |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>34367_34367_1_GPR125-DNER_GPR125_chr4_22425814_ENST00000334304_DNER_chr2_230456604_ENST00000341772_length(transcript)=4724nt_BP=1875nt GGCGGCGGCAGAGGAGGAGGAGGAGGCGGTGCTCGCGCCGGGCGGTAGAGCGGCGCTGGGACCCATGCGGCCGTGACCCCCGGCTCCCTA GAGGCCCAGCGCAGCCGCAGCGGACAAAGGAGCATGTCCGCGCCGGGGAAGGCCCGTCCTCCGGCCGCCATAAGGCTCCGGTCGCCGCTG GGCCCGCGCCGCGCTCCTGCCCGCCCGGGCTCCGGGGCGGCCCGCTAGGCCAGTGCGCCGCCGCTCGCCCCGCAGGCCCCGGCCCGCAGC ATGGAGCCACCCGGACGCCGGCGGGGCCGCGCGCAGCCGCCGCTGTTGCTGCCGCTCTCGCTGTTAGCGCTGCTCGCGCTGCTGGGAGGC GGCGGCGGCGGCGGCGCCGCGGCGCTGCCCGCCGGCTGCAAGCACGATGGGCGGCCCCGAGGGGCTGGCAGGGCGGCGGGCGCCGCCGAG GGCAAGGTGGTGTGCAGCAGCCTGGAACTCGCGCAGGTCCTGCCCCCAGATACTCTGCCCAACCGCACGGTCACCCTGATTCTGAGTAAC AATAAGATATCCGAGCTGAAGAATGGCTCATTTTCTGGGTTAAGTCTCCTTGAAAGATTGGACCTCCGAAACAATCTTATTAGTAGTATA GATCCAGGTGCCTTCTGGGGACTGTCATCTCTAAAAAGATTGGATCTGACAAACAATCGAATAGGATGTCTGAATGCAGACATATTTCGA GGACTCACCAATCTGGTTCGGCTAAACCTTTCGGGGAATTTGTTTTCTTCATTATCTCAAGGAACTTTTGATTATCTTGCGTCATTACGG TCTTTGGAATTCCAGACTGAGTATCTTTTGTGTGACTGTAACATACTGTGGATGCATCGCTGGGTAAAGGAGAAGAACATCACGGTACGG GATACCAGGTGTGTTTATCCTAAGTCACTGCAGGCCCAACCAGTCACAGGCGTGAAGCAGGAGCTGTTGACATGCGACCCTCCGCTTGAA TTGCCGTCTTTCTACATGACTCCATCTCATCGCCAAGTTGTGTTTGAAGGAGACAGCCTTCCTTTCCAGTGCATGGCTTCATATATTGAT CAGGACATGCAAGTGTTGTGGTATCAGGATGGGAGAATAGTTGAAACCGATGAATCGCAAGGTATTTTTGTTGAAAAGAACATGATTCAC AACTGCTCCTTGATTGCAAGTGCCCTAACCATTTCTAATATTCAGGCTGGATCTACTGGAAATTGGGGCTGTCATGTCCAGACCAAACGT GGGAATAATACGAGGACTGTGGATATTGTGGTATTAGAGAGTTCTGCACAGTACTGTCCTCCAGAGAGGGTGGTAAACAACAAAGGTGAC TTCAGATGGCCCAGAACATTGGCAGGCATTACTGCATATCTGCAGTGTACGCGGAACACCCATGGCAGTGGGATATATCCCGGAAACCCA CAGGATGAGAGAAAAGCTTGGCGCAGATGTGATAGAGGTGGCTTTTGGGCAGATGATGATTATTCTCGCTGTCAGTATGCAAATGATGTC ACTAGAGTTCTTTATATGTTTAATCAGATGCCCCTCAATCTTACCAATGCCGTGGCAACAGCTCGACAGTTACTGGCTTACACTGTGGAA GCAGCCAACTTTTCTGACAAAATGGATGTTATATTTGTGGCAGAAATGATTGAAAAATTTGGAAGATTTACCAAGGAGGAAAAATCAAAA GAGCTAGGTGACGTGATGGTTGACATTGCAAGTAACATCATGTTGGCTGATGAACGTGTCCTGTGGCTGGCGCAGAGGGAAGCTAAAGCC TGCAGTAGGATTGTGCAGTGTCTTCAGCGCATTGCTACCTACCGGCTAGCCGGTGGAGCTCACGTTTATTCAACACTTGTTGCAGATCCT TGTGCCAGCAACCCTTGTCACCATGGCAACTGCAGCAGCAGCAGCAGCAGCAGCAGCGATGGCTACCTCTGCATTTGCAATGAAGGCTAT GAAGGTCCCAACTGTGAACAGGCACTTCCCAGTCTCCCAGCCACTGGCTGGACCGAATCCATGGCACCCCGACAGCTTCAGCCTGTTCCT GCTACTCAGGAGCCTGACAAAATCCTGCCTCGCTCTCAGGCAACGGTGACACTGCCTACCTGGCAGCCGAAAACAGGGCAGAAAGTTGTA GAAATGAAATGGGATCAAGTGGAGGTGATCCCAGATATTGCCTGTGGGAATGCCAGTTCTAACAGCTCTGCGGGTGGCCGCCTGGTATCC TTTGAAGTGCCACAGAACACCTCAGTCAAGATTCGGCAAGATGCCACTGCCTCACTGATTTTGCTCTGGAAGGTCACGGCCACAGGATTC CAACAGTGCTCCCTCATAGATGGACGAAGTGTGACCCCCCTTCAGGCTTCAGGGGGACTGGTCCTCCTGGAGGAGATGCTCGCCTTGGGG AATAATCACTTTATTGGTTTTGTGAATGATTCTGTGACTAAGTCTATTGTGGCTTTGCGCTTAACTCTGGTGGTGAAGGTCAGCACCTGT GTGCCGGGGGAGAGTCACGCAAATGACTTGGAGTGTTCAGGAAAAGGAAAATGCACCACGAAGCCGTCAGAGGCAACTTTTTCCTGTACC TGTGAGGAGCAGTACGTGGGTACTTTCTGTGAAGAATACGATGCTTGCCAGAGGAAACCTTGCCAAAACAACGCGAGCTGTATTGATGCA AATGAAAAGCAAGATGGGAGCAATTTCACCTGTGTTTGCCTTCCTGGTTATACTGGAGAGCTTTGCCAGTCCAAGATTGATTACTGCATC CTAGACCCATGCAGAAATGGAGCAACATGCATTTCCAGTCTCAGTGGATTCACCTGCCAGTGTCCAGAAGGATACTTCGGATCTGCTTGT GAAGAAAAGGTGGACCCCTGCGCCTCGTCTCCGTGCCAGAACAACGGCACCTGCTATGTGGACGGGGTACACTTTACCTGCAACTGCAGC CCGGGCTTCACAGGGCCGACCTGTGCCCAGCTTATTGACTTCTGTGCCCTCAGCCCCTGTGCTCATGGCACGTGCCGCAGCGTGGGCACC AGCTACAAATGCCTCTGTGATCCAGGTTACCATGGCCTCTACTGTGAGGAGGAATATAATGAGTGCCTCTCCGCTCCATGCCTGAATGCA GCCACCTGCAGGGACCTCGTTAATGGCTATGAGTGTGTGTGCCTGGCAGAATACAAAGGAACACACTGTGAATTGTACAAGGATCCCTGC GCTAACGTCAGCTGTCTGAACGGAGCCACCTGTGACAGCGACGGCCTGAATGGCACGTGCATCTGTGCACCCGGGTTTACAGGTGAAGAG TGCGACATTGACATAAATGAATGTGACAGTAACCCCTGCCACCATGGTGGGAGCTGCCTGGACCAGCCCAATGGTTATAACTGCCACTGC CCGCATGGTTGGGTGGGAGCAAACTGTGAGATCCACCTCCAATGGAAGTCCGGGCACATGGCGGAGAGCCTCACCAACATGCCACGGCAC TCCCTCTACATCATCATTGGAGCCCTCTGCGTGGCCTTCATCCTTATGCTGATCATCCTGATCGTGGGGATTTGCCGCATCAGCCGCATT GAATACCAGGGTTCTTCCAGGCCAGCCTATGAGGAGTTCTACAACTGCCGCAGCATCGACAGCGAGTTCAGCAATGCCATTGCATCCATC CGGCATGCCAGGTTTGGAAAGAAATCCCGGCCTGCAATGTATGATGTGAGCCCCATCGCCTATGAAGATTACAGTCCTGATGACAAACCC TTGGTCACACTGATTAAAACTAAAGATTTGTAATCTTTTTTTGGATTATTTTTCAAAAAGATGAGATACTACACTCATTTAAATATTTTT AAGAAAATAAAAAGCTTAAGAAATTTAAAATGCTAGCTGCTCAAGAGTTTTCAGTAGAATATTTAAGAACTAATTTTCTGCAGCTTTTAG TTTGGAAAAAATATTTTAAAAACAAAATTTGTGAAACCTATAGACGATGTTTTAATGTACCTTCAGCTCTCTAAACTGTGTGCTTCTACT AGTGTGTGCTCTTTTCACTGTAGACACTATCACGAGACCCAGATTAATTTCTGTGGTTGTTACAGAATAAGTCTAATCAAGGAGAAGTTT CTGTTTGACGTTTGAGTGCCGGCTTTCTGAGTAGAGTTAGGAAAACCACGTAACGTAGCATATGATGTATAATAGAGTATACCCGTTACT TAAAAAGAAGTCTGAAATGTTCGTTTTGTGGAAAAGAAACTAGTTAAATTTACTATTCCTAACCCGAATGAAATTAGCCTTTGCCTTATT CTGTGCATGGGTAAGTAACTTATTTCTGCACTGTTTTGTTGAACTTTGTGGAAACATTCTTTCGAGTTTGTTTTTGTCATTTTCGTAACA GTCGTCGAACTAGGCCTCAAAAACATACGTAACGAAAAGGCCTAGCGAGGCAAATTCTGATTGATTTGAATCTATATTTTTCTTTAAAAA GTCAAGGGTTCTATATTGTGAGTAAATTAAATTTACATTTGAGTTGTTTGTTGCTAAGAGGTAGTAAATGTAAGAGAGTACTGGTTCCTT CAGTAGTGAGTATTTCTCATAGTGCAGCTTTATTTATCTCCAGGATGTTTTTGTGGCTGTATTTGATTGATATGTGCTTCTTCTGATTCT >34367_34367_1_GPR125-DNER_GPR125_chr4_22425814_ENST00000334304_DNER_chr2_230456604_ENST00000341772_length(amino acids)=1180AA_BP=535 MEPPGRRRGRAQPPLLLPLSLLALLALLGGGGGGGAAALPAGCKHDGRPRGAGRAAGAAEGKVVCSSLELAQVLPPDTLPNRTVTLILSN NKISELKNGSFSGLSLLERLDLRNNLISSIDPGAFWGLSSLKRLDLTNNRIGCLNADIFRGLTNLVRLNLSGNLFSSLSQGTFDYLASLR SLEFQTEYLLCDCNILWMHRWVKEKNITVRDTRCVYPKSLQAQPVTGVKQELLTCDPPLELPSFYMTPSHRQVVFEGDSLPFQCMASYID QDMQVLWYQDGRIVETDESQGIFVEKNMIHNCSLIASALTISNIQAGSTGNWGCHVQTKRGNNTRTVDIVVLESSAQYCPPERVVNNKGD FRWPRTLAGITAYLQCTRNTHGSGIYPGNPQDERKAWRRCDRGGFWADDDYSRCQYANDVTRVLYMFNQMPLNLTNAVATARQLLAYTVE AANFSDKMDVIFVAEMIEKFGRFTKEEKSKELGDVMVDIASNIMLADERVLWLAQREAKACSRIVQCLQRIATYRLAGGAHVYSTLVADP CASNPCHHGNCSSSSSSSSDGYLCICNEGYEGPNCEQALPSLPATGWTESMAPRQLQPVPATQEPDKILPRSQATVTLPTWQPKTGQKVV EMKWDQVEVIPDIACGNASSNSSAGGRLVSFEVPQNTSVKIRQDATASLILLWKVTATGFQQCSLIDGRSVTPLQASGGLVLLEEMLALG NNHFIGFVNDSVTKSIVALRLTLVVKVSTCVPGESHANDLECSGKGKCTTKPSEATFSCTCEEQYVGTFCEEYDACQRKPCQNNASCIDA NEKQDGSNFTCVCLPGYTGELCQSKIDYCILDPCRNGATCISSLSGFTCQCPEGYFGSACEEKVDPCASSPCQNNGTCYVDGVHFTCNCS PGFTGPTCAQLIDFCALSPCAHGTCRSVGTSYKCLCDPGYHGLYCEEEYNECLSAPCLNAATCRDLVNGYECVCLAEYKGTHCELYKDPC ANVSCLNGATCDSDGLNGTCICAPGFTGEECDIDINECDSNPCHHGGSCLDQPNGYNCHCPHGWVGANCEIHLQWKSGHMAESLTNMPRH SLYIIIGALCVAFILMLIILIVGICRISRIEYQGSSRPAYEEFYNCRSIDSEFSNAIASIRHARFGKKSRPAMYDVSPIAYEDYSPDDKP -------------------------------------------------------------- >34367_34367_2_GPR125-DNER_GPR125_chr4_22425814_ENST00000502482_DNER_chr2_230456604_ENST00000341772_length(transcript)=4667nt_BP=1818nt GGGACCCATGCGGCCGTGACCCCCGGCTCCCTAGAGGCCCAGCGCAGCCGCAGCGGACAAAGGAGCATGTCCGCGCCGGGGAAGGCCCGT CCTCCGGCCGCCATAAGGCTCCGGTCGCCGCTGGGCCCGCGCCGCGCTCCTGCCCGCCCGGGCTCCGGGGCGGCCCGCTAGGCCAGTGCG CCGCCGCTCGCCCCGCAGGCCCCGGCCCGCAGCATGGAGCCACCCGGACGCCGGCGGGGCCGCGCGCAGCCGCCGCTGTTGCTGCCGCTC TCGCTGTTAGCGCTGCTCGCGCTGCTGGGAGGCGGCGGCGGCGGCGGCGCCGCGGCGCTGCCCGCCGGCTGCAAGCACGATGGGCGGCCC CGAGGGGCTGGCAGGGCGGCGGGCGCCGCCGAGGGCAAGGTGGTGTGCAGCAGCCTGGAACTCGCGCAGGTCCTGCCCCCAGATACTCTG CCCAACCGCACGGTCACCCTGATTCTGAGTAACAATAAGATATCCGAGCTGAAGAATGGCTCATTTTCTGGGTTAAGTCTCCTTGAAAGA TTGGACCTCCGAAACAATCTTATTAGTAGTATAGATCCAGGTGCCTTCTGGGGACTGTCATCTCTAAAAAGATTGGATCTGACAAACAAT CGAATAGGATGTCTGAATGCAGACATATTTCGAGGACTCACCAATCTGGTTCGGCTAAACCTTTCGGGGAATTTGTTTTCTTCATTATCT CAAGGAACTTTTGATTATCTTGCGTCATTACGGTCTTTGGAATTCCAGACTGAGTATCTTTTGTGTGACTGTAACATACTGTGGATGCAT CGCTGGGTAAAGGAGAAGAACATCACGGTACGGGATACCAGGTGTGTTTATCCTAAGTCACTGCAGGCCCAACCAGTCACAGGCGTGAAG CAGGAGCTGTTGACATGCGACCCTCCGCTTGAATTGCCGTCTTTCTACATGACTCCATCTCATCGCCAAGTTGTGTTTGAAGGAGACAGC CTTCCTTTCCAGTGCATGGCTTCATATATTGATCAGGACATGCAAGTGTTGTGGTATCAGGATGGGAGAATAGTTGAAACCGATGAATCG CAAGGTATTTTTGTTGAAAAGAACATGATTCACAACTGCTCCTTGATTGCAAGTGCCCTAACCATTTCTAATATTCAGGCTGGATCTACT GGAAATTGGGGCTGTCATGTCCAGACCAAACGTGGGAATAATACGAGGACTGTGGATATTGTGGTATTAGAGAGTTCTGCACAGTACTGT CCTCCAGAGAGGGTGGTAAACAACAAAGGTGACTTCAGATGGCCCAGAACATTGGCAGGCATTACTGCATATCTGCAGTGTACGCGGAAC ACCCATGGCAGTGGGATATATCCCGGAAACCCACAGGATGAGAGAAAAGCTTGGCGCAGATGTGATAGAGGTGGCTTTTGGGCAGATGAT GATTATTCTCGCTGTCAGTATGCAAATGATGTCACTAGAGTTCTTTATATGTTTAATCAGATGCCCCTCAATCTTACCAATGCCGTGGCA ACAGCTCGACAGTTACTGGCTTACACTGTGGAAGCAGCCAACTTTTCTGACAAAATGGATGTTATATTTGTGGCAGAAATGATTGAAAAA TTTGGAAGATTTACCAAGGAGGAAAAATCAAAAGAGCTAGGTGACGTGATGGTTGACATTGCAAGTAACATCATGTTGGCTGATGAACGT GTCCTGTGGCTGGCGCAGAGGGAAGCTAAAGCCTGCAGTAGGATTGTGCAGTGTCTTCAGCGCATTGCTACCTACCGGCTAGCCGGTGGA GCTCACGTTTATTCAACACTTGTTGCAGATCCTTGTGCCAGCAACCCTTGTCACCATGGCAACTGCAGCAGCAGCAGCAGCAGCAGCAGC GATGGCTACCTCTGCATTTGCAATGAAGGCTATGAAGGTCCCAACTGTGAACAGGCACTTCCCAGTCTCCCAGCCACTGGCTGGACCGAA TCCATGGCACCCCGACAGCTTCAGCCTGTTCCTGCTACTCAGGAGCCTGACAAAATCCTGCCTCGCTCTCAGGCAACGGTGACACTGCCT ACCTGGCAGCCGAAAACAGGGCAGAAAGTTGTAGAAATGAAATGGGATCAAGTGGAGGTGATCCCAGATATTGCCTGTGGGAATGCCAGT TCTAACAGCTCTGCGGGTGGCCGCCTGGTATCCTTTGAAGTGCCACAGAACACCTCAGTCAAGATTCGGCAAGATGCCACTGCCTCACTG ATTTTGCTCTGGAAGGTCACGGCCACAGGATTCCAACAGTGCTCCCTCATAGATGGACGAAGTGTGACCCCCCTTCAGGCTTCAGGGGGA CTGGTCCTCCTGGAGGAGATGCTCGCCTTGGGGAATAATCACTTTATTGGTTTTGTGAATGATTCTGTGACTAAGTCTATTGTGGCTTTG CGCTTAACTCTGGTGGTGAAGGTCAGCACCTGTGTGCCGGGGGAGAGTCACGCAAATGACTTGGAGTGTTCAGGAAAAGGAAAATGCACC ACGAAGCCGTCAGAGGCAACTTTTTCCTGTACCTGTGAGGAGCAGTACGTGGGTACTTTCTGTGAAGAATACGATGCTTGCCAGAGGAAA CCTTGCCAAAACAACGCGAGCTGTATTGATGCAAATGAAAAGCAAGATGGGAGCAATTTCACCTGTGTTTGCCTTCCTGGTTATACTGGA GAGCTTTGCCAGTCCAAGATTGATTACTGCATCCTAGACCCATGCAGAAATGGAGCAACATGCATTTCCAGTCTCAGTGGATTCACCTGC CAGTGTCCAGAAGGATACTTCGGATCTGCTTGTGAAGAAAAGGTGGACCCCTGCGCCTCGTCTCCGTGCCAGAACAACGGCACCTGCTAT GTGGACGGGGTACACTTTACCTGCAACTGCAGCCCGGGCTTCACAGGGCCGACCTGTGCCCAGCTTATTGACTTCTGTGCCCTCAGCCCC TGTGCTCATGGCACGTGCCGCAGCGTGGGCACCAGCTACAAATGCCTCTGTGATCCAGGTTACCATGGCCTCTACTGTGAGGAGGAATAT AATGAGTGCCTCTCCGCTCCATGCCTGAATGCAGCCACCTGCAGGGACCTCGTTAATGGCTATGAGTGTGTGTGCCTGGCAGAATACAAA GGAACACACTGTGAATTGTACAAGGATCCCTGCGCTAACGTCAGCTGTCTGAACGGAGCCACCTGTGACAGCGACGGCCTGAATGGCACG TGCATCTGTGCACCCGGGTTTACAGGTGAAGAGTGCGACATTGACATAAATGAATGTGACAGTAACCCCTGCCACCATGGTGGGAGCTGC CTGGACCAGCCCAATGGTTATAACTGCCACTGCCCGCATGGTTGGGTGGGAGCAAACTGTGAGATCCACCTCCAATGGAAGTCCGGGCAC ATGGCGGAGAGCCTCACCAACATGCCACGGCACTCCCTCTACATCATCATTGGAGCCCTCTGCGTGGCCTTCATCCTTATGCTGATCATC CTGATCGTGGGGATTTGCCGCATCAGCCGCATTGAATACCAGGGTTCTTCCAGGCCAGCCTATGAGGAGTTCTACAACTGCCGCAGCATC GACAGCGAGTTCAGCAATGCCATTGCATCCATCCGGCATGCCAGGTTTGGAAAGAAATCCCGGCCTGCAATGTATGATGTGAGCCCCATC GCCTATGAAGATTACAGTCCTGATGACAAACCCTTGGTCACACTGATTAAAACTAAAGATTTGTAATCTTTTTTTGGATTATTTTTCAAA AAGATGAGATACTACACTCATTTAAATATTTTTAAGAAAATAAAAAGCTTAAGAAATTTAAAATGCTAGCTGCTCAAGAGTTTTCAGTAG AATATTTAAGAACTAATTTTCTGCAGCTTTTAGTTTGGAAAAAATATTTTAAAAACAAAATTTGTGAAACCTATAGACGATGTTTTAATG TACCTTCAGCTCTCTAAACTGTGTGCTTCTACTAGTGTGTGCTCTTTTCACTGTAGACACTATCACGAGACCCAGATTAATTTCTGTGGT TGTTACAGAATAAGTCTAATCAAGGAGAAGTTTCTGTTTGACGTTTGAGTGCCGGCTTTCTGAGTAGAGTTAGGAAAACCACGTAACGTA GCATATGATGTATAATAGAGTATACCCGTTACTTAAAAAGAAGTCTGAAATGTTCGTTTTGTGGAAAAGAAACTAGTTAAATTTACTATT CCTAACCCGAATGAAATTAGCCTTTGCCTTATTCTGTGCATGGGTAAGTAACTTATTTCTGCACTGTTTTGTTGAACTTTGTGGAAACAT TCTTTCGAGTTTGTTTTTGTCATTTTCGTAACAGTCGTCGAACTAGGCCTCAAAAACATACGTAACGAAAAGGCCTAGCGAGGCAAATTC TGATTGATTTGAATCTATATTTTTCTTTAAAAAGTCAAGGGTTCTATATTGTGAGTAAATTAAATTTACATTTGAGTTGTTTGTTGCTAA GAGGTAGTAAATGTAAGAGAGTACTGGTTCCTTCAGTAGTGAGTATTTCTCATAGTGCAGCTTTATTTATCTCCAGGATGTTTTTGTGGC >34367_34367_2_GPR125-DNER_GPR125_chr4_22425814_ENST00000502482_DNER_chr2_230456604_ENST00000341772_length(amino acids)=1180AA_BP=535 MEPPGRRRGRAQPPLLLPLSLLALLALLGGGGGGGAAALPAGCKHDGRPRGAGRAAGAAEGKVVCSSLELAQVLPPDTLPNRTVTLILSN NKISELKNGSFSGLSLLERLDLRNNLISSIDPGAFWGLSSLKRLDLTNNRIGCLNADIFRGLTNLVRLNLSGNLFSSLSQGTFDYLASLR SLEFQTEYLLCDCNILWMHRWVKEKNITVRDTRCVYPKSLQAQPVTGVKQELLTCDPPLELPSFYMTPSHRQVVFEGDSLPFQCMASYID QDMQVLWYQDGRIVETDESQGIFVEKNMIHNCSLIASALTISNIQAGSTGNWGCHVQTKRGNNTRTVDIVVLESSAQYCPPERVVNNKGD FRWPRTLAGITAYLQCTRNTHGSGIYPGNPQDERKAWRRCDRGGFWADDDYSRCQYANDVTRVLYMFNQMPLNLTNAVATARQLLAYTVE AANFSDKMDVIFVAEMIEKFGRFTKEEKSKELGDVMVDIASNIMLADERVLWLAQREAKACSRIVQCLQRIATYRLAGGAHVYSTLVADP CASNPCHHGNCSSSSSSSSDGYLCICNEGYEGPNCEQALPSLPATGWTESMAPRQLQPVPATQEPDKILPRSQATVTLPTWQPKTGQKVV EMKWDQVEVIPDIACGNASSNSSAGGRLVSFEVPQNTSVKIRQDATASLILLWKVTATGFQQCSLIDGRSVTPLQASGGLVLLEEMLALG NNHFIGFVNDSVTKSIVALRLTLVVKVSTCVPGESHANDLECSGKGKCTTKPSEATFSCTCEEQYVGTFCEEYDACQRKPCQNNASCIDA NEKQDGSNFTCVCLPGYTGELCQSKIDYCILDPCRNGATCISSLSGFTCQCPEGYFGSACEEKVDPCASSPCQNNGTCYVDGVHFTCNCS PGFTGPTCAQLIDFCALSPCAHGTCRSVGTSYKCLCDPGYHGLYCEEEYNECLSAPCLNAATCRDLVNGYECVCLAEYKGTHCELYKDPC ANVSCLNGATCDSDGLNGTCICAPGFTGEECDIDINECDSNPCHHGGSCLDQPNGYNCHCPHGWVGANCEIHLQWKSGHMAESLTNMPRH SLYIIIGALCVAFILMLIILIVGICRISRIEYQGSSRPAYEEFYNCRSIDSEFSNAIASIRHARFGKKSRPAMYDVSPIAYEDYSPDDKP -------------------------------------------------------------- >34367_34367_3_GPR125-DNER_GPR125_chr4_22425814_ENST00000508133_DNER_chr2_230456604_ENST00000341772_length(transcript)=3804nt_BP=955nt ATTTCTGTAATCATCTGATACTCTTAGGATGCCACTGAAGAGGAATAACTCTAAATACCCTCCGCTTGAATTGCCGTCTTTCTACATGAC TCCATCTCATCGCCAAGTTGTGTTTGAAGGAGACAGCCTTCCTTTCCAGTGCATGGCTTCATATATTGATCAGGACATGCAAGTGTTGTG GTATCAGGATGGGAGAATAGTTGAAACCGATGAATCGCAAGGTATTTTTGTTGAAAAGAACATGATTCACAACTGCTCCTTGATTGCAAG TGCCCTAACCATTTCTAATATTCAGGCTGGATCTACTGGAAATTGGGGCTGTCATGTCCAGACCAAACGTGGGAATAATACGAGGACTGT GGATATTGTGGTATTAGAGAGTTCTGCACAGTACTGTCCTCCAGAGAGGGTGGTAAACAACAAAGGTGACTTCAGATGGCCCAGAACATT GGCAGGCATTACTGCATATCTGCAGTGTACGCGGAACACCCATGGCAGTGGGATATATCCCGGAAACCCACAGGATGAGAGAAAAGCTTG GCGCAGATGTGATAGAGGTGGCTTTTGGGCAGATGATGATTATTCTCGCTGTCAGTATGCAAATGATGTCACTAGAGTTCTTTATATGTT TAATCAGATGCCCCTCAATCTTACCAATGCCGTGGCAACAGCTCGACAGTTACTGGCTTACACTGTGGAAGCAGCCAACTTTTCTGACAA AATGGATGTTATATTTGTGGCAGAAATGATTGAAAAATTTGGAAGATTTACCAAGGAGGAAAAATCAAAAGAGCTAGGTGACGTGATGGT TGACATTGCAAGTAACATCATGTTGGCTGATGAACGTGTCCTGTGGCTGGCGCAGAGGGAAGCTAAAGCCTGCAGTAGGATTGTGCAGTG TCTTCAGCGCATTGCTACCTACCGGCTAGCCGGTGGAGCTCACGTTTATTCAACACTTGTTGCAGATCCTTGTGCCAGCAACCCTTGTCA CCATGGCAACTGCAGCAGCAGCAGCAGCAGCAGCAGCGATGGCTACCTCTGCATTTGCAATGAAGGCTATGAAGGTCCCAACTGTGAACA GGCACTTCCCAGTCTCCCAGCCACTGGCTGGACCGAATCCATGGCACCCCGACAGCTTCAGCCTGTTCCTGCTACTCAGGAGCCTGACAA AATCCTGCCTCGCTCTCAGGCAACGGTGACACTGCCTACCTGGCAGCCGAAAACAGGGCAGAAAGTTGTAGAAATGAAATGGGATCAAGT GGAGGTGATCCCAGATATTGCCTGTGGGAATGCCAGTTCTAACAGCTCTGCGGGTGGCCGCCTGGTATCCTTTGAAGTGCCACAGAACAC CTCAGTCAAGATTCGGCAAGATGCCACTGCCTCACTGATTTTGCTCTGGAAGGTCACGGCCACAGGATTCCAACAGTGCTCCCTCATAGA TGGACGAAGTGTGACCCCCCTTCAGGCTTCAGGGGGACTGGTCCTCCTGGAGGAGATGCTCGCCTTGGGGAATAATCACTTTATTGGTTT TGTGAATGATTCTGTGACTAAGTCTATTGTGGCTTTGCGCTTAACTCTGGTGGTGAAGGTCAGCACCTGTGTGCCGGGGGAGAGTCACGC AAATGACTTGGAGTGTTCAGGAAAAGGAAAATGCACCACGAAGCCGTCAGAGGCAACTTTTTCCTGTACCTGTGAGGAGCAGTACGTGGG TACTTTCTGTGAAGAATACGATGCTTGCCAGAGGAAACCTTGCCAAAACAACGCGAGCTGTATTGATGCAAATGAAAAGCAAGATGGGAG CAATTTCACCTGTGTTTGCCTTCCTGGTTATACTGGAGAGCTTTGCCAGTCCAAGATTGATTACTGCATCCTAGACCCATGCAGAAATGG AGCAACATGCATTTCCAGTCTCAGTGGATTCACCTGCCAGTGTCCAGAAGGATACTTCGGATCTGCTTGTGAAGAAAAGGTGGACCCCTG CGCCTCGTCTCCGTGCCAGAACAACGGCACCTGCTATGTGGACGGGGTACACTTTACCTGCAACTGCAGCCCGGGCTTCACAGGGCCGAC CTGTGCCCAGCTTATTGACTTCTGTGCCCTCAGCCCCTGTGCTCATGGCACGTGCCGCAGCGTGGGCACCAGCTACAAATGCCTCTGTGA TCCAGGTTACCATGGCCTCTACTGTGAGGAGGAATATAATGAGTGCCTCTCCGCTCCATGCCTGAATGCAGCCACCTGCAGGGACCTCGT TAATGGCTATGAGTGTGTGTGCCTGGCAGAATACAAAGGAACACACTGTGAATTGTACAAGGATCCCTGCGCTAACGTCAGCTGTCTGAA CGGAGCCACCTGTGACAGCGACGGCCTGAATGGCACGTGCATCTGTGCACCCGGGTTTACAGGTGAAGAGTGCGACATTGACATAAATGA ATGTGACAGTAACCCCTGCCACCATGGTGGGAGCTGCCTGGACCAGCCCAATGGTTATAACTGCCACTGCCCGCATGGTTGGGTGGGAGC AAACTGTGAGATCCACCTCCAATGGAAGTCCGGGCACATGGCGGAGAGCCTCACCAACATGCCACGGCACTCCCTCTACATCATCATTGG AGCCCTCTGCGTGGCCTTCATCCTTATGCTGATCATCCTGATCGTGGGGATTTGCCGCATCAGCCGCATTGAATACCAGGGTTCTTCCAG GCCAGCCTATGAGGAGTTCTACAACTGCCGCAGCATCGACAGCGAGTTCAGCAATGCCATTGCATCCATCCGGCATGCCAGGTTTGGAAA GAAATCCCGGCCTGCAATGTATGATGTGAGCCCCATCGCCTATGAAGATTACAGTCCTGATGACAAACCCTTGGTCACACTGATTAAAAC TAAAGATTTGTAATCTTTTTTTGGATTATTTTTCAAAAAGATGAGATACTACACTCATTTAAATATTTTTAAGAAAATAAAAAGCTTAAG AAATTTAAAATGCTAGCTGCTCAAGAGTTTTCAGTAGAATATTTAAGAACTAATTTTCTGCAGCTTTTAGTTTGGAAAAAATATTTTAAA AACAAAATTTGTGAAACCTATAGACGATGTTTTAATGTACCTTCAGCTCTCTAAACTGTGTGCTTCTACTAGTGTGTGCTCTTTTCACTG TAGACACTATCACGAGACCCAGATTAATTTCTGTGGTTGTTACAGAATAAGTCTAATCAAGGAGAAGTTTCTGTTTGACGTTTGAGTGCC GGCTTTCTGAGTAGAGTTAGGAAAACCACGTAACGTAGCATATGATGTATAATAGAGTATACCCGTTACTTAAAAAGAAGTCTGAAATGT TCGTTTTGTGGAAAAGAAACTAGTTAAATTTACTATTCCTAACCCGAATGAAATTAGCCTTTGCCTTATTCTGTGCATGGGTAAGTAACT TATTTCTGCACTGTTTTGTTGAACTTTGTGGAAACATTCTTTCGAGTTTGTTTTTGTCATTTTCGTAACAGTCGTCGAACTAGGCCTCAA AAACATACGTAACGAAAAGGCCTAGCGAGGCAAATTCTGATTGATTTGAATCTATATTTTTCTTTAAAAAGTCAAGGGTTCTATATTGTG AGTAAATTAAATTTACATTTGAGTTGTTTGTTGCTAAGAGGTAGTAAATGTAAGAGAGTACTGGTTCCTTCAGTAGTGAGTATTTCTCAT AGTGCAGCTTTATTTATCTCCAGGATGTTTTTGTGGCTGTATTTGATTGATATGTGCTTCTTCTGATTCTTGCTAATTTCCAACCATATT >34367_34367_3_GPR125-DNER_GPR125_chr4_22425814_ENST00000508133_DNER_chr2_230456604_ENST00000341772_length(amino acids)=954AA_BP=309 MPLKRNNSKYPPLELPSFYMTPSHRQVVFEGDSLPFQCMASYIDQDMQVLWYQDGRIVETDESQGIFVEKNMIHNCSLIASALTISNIQA GSTGNWGCHVQTKRGNNTRTVDIVVLESSAQYCPPERVVNNKGDFRWPRTLAGITAYLQCTRNTHGSGIYPGNPQDERKAWRRCDRGGFW ADDDYSRCQYANDVTRVLYMFNQMPLNLTNAVATARQLLAYTVEAANFSDKMDVIFVAEMIEKFGRFTKEEKSKELGDVMVDIASNIMLA DERVLWLAQREAKACSRIVQCLQRIATYRLAGGAHVYSTLVADPCASNPCHHGNCSSSSSSSSDGYLCICNEGYEGPNCEQALPSLPATG WTESMAPRQLQPVPATQEPDKILPRSQATVTLPTWQPKTGQKVVEMKWDQVEVIPDIACGNASSNSSAGGRLVSFEVPQNTSVKIRQDAT ASLILLWKVTATGFQQCSLIDGRSVTPLQASGGLVLLEEMLALGNNHFIGFVNDSVTKSIVALRLTLVVKVSTCVPGESHANDLECSGKG KCTTKPSEATFSCTCEEQYVGTFCEEYDACQRKPCQNNASCIDANEKQDGSNFTCVCLPGYTGELCQSKIDYCILDPCRNGATCISSLSG FTCQCPEGYFGSACEEKVDPCASSPCQNNGTCYVDGVHFTCNCSPGFTGPTCAQLIDFCALSPCAHGTCRSVGTSYKCLCDPGYHGLYCE EEYNECLSAPCLNAATCRDLVNGYECVCLAEYKGTHCELYKDPCANVSCLNGATCDSDGLNGTCICAPGFTGEECDIDINECDSNPCHHG GSCLDQPNGYNCHCPHGWVGANCEIHLQWKSGHMAESLTNMPRHSLYIIIGALCVAFILMLIILIVGICRISRIEYQGSSRPAYEEFYNC -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for GPR125-DNER |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
Tgene | DNER | chr4:22425814 | chr2:230456604 | ENST00000341772 | 0 | 13 | 677_680 | 92.0 | 738.0 | AP1G1 and somatodendritic targeting |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Tgene | DNER | chr4:22425814 | chr2:230456604 | ENST00000341772 | 0 | 13 | 44_133 | 92.0 | 738.0 | NOTCH1 |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for GPR125-DNER |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for GPR125-DNER |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |