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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:ARL13B-EPS8 (FusionGDB2 ID:HG200894TG2059) |
Fusion Gene Summary for ARL13B-EPS8 |
Fusion gene summary |
Fusion gene information | Fusion gene name: ARL13B-EPS8 | Fusion gene ID: hg200894tg2059 | Hgene | Tgene | Gene symbol | ARL13B | EPS8 | Gene ID | 200894 | 2059 |
Gene name | ADP ribosylation factor like GTPase 13B | epidermal growth factor receptor pathway substrate 8 | |
Synonyms | ARL2L1|JBTS8 | DFNB102 | |
Cytomap | ('ARL13B')('EPS8') 3q11.1-q11.2 | 12p12.3 | |
Type of gene | protein-coding | protein-coding | |
Description | ADP-ribosylation factor-like protein 13BADP-ribosylation factor-like 13BADP-ribosylation factor-like 2-like 1ARL2-like protein 1 | epidermal growth factor receptor kinase substrate 8 | |
Modification date | 20200313 | 20200327 | |
UniProtAcc | . | Q12929 | |
Ensembl transtripts involved in fusion gene | ENST00000486562, ENST00000394222, ENST00000471138, ENST00000539730, ENST00000303097, ENST00000535334, | ||
Fusion gene scores | * DoF score | 5 X 3 X 5=75 | 9 X 7 X 4=252 |
# samples | 5 | 9 | |
** MAII score | log2(5/75*10)=-0.584962500721156 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(9/252*10)=-1.48542682717024 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: ARL13B [Title/Abstract] AND EPS8 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | ARL13B(93714788)-EPS8(15823857), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | ARL13B-EPS8 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. ARL13B-EPS8 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. ARL13B-EPS8 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. ARL13B-EPS8 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene breakpoints across ARL13B (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across EPS8 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | STAD | TCGA-BR-8365-01A | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
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Fusion Gene ORF analysis for ARL13B-EPS8 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
3UTR-3CDS | ENST00000486562 | ENST00000281172 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
3UTR-3CDS | ENST00000486562 | ENST00000543523 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
3UTR-3CDS | ENST00000486562 | ENST00000543612 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
3UTR-intron | ENST00000486562 | ENST00000540613 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
3UTR-intron | ENST00000486562 | ENST00000542903 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
5CDS-intron | ENST00000394222 | ENST00000540613 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
5CDS-intron | ENST00000394222 | ENST00000542903 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
5CDS-intron | ENST00000471138 | ENST00000540613 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
5CDS-intron | ENST00000471138 | ENST00000542903 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
5UTR-3CDS | ENST00000539730 | ENST00000281172 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
5UTR-3CDS | ENST00000539730 | ENST00000543523 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
5UTR-3CDS | ENST00000539730 | ENST00000543612 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
5UTR-intron | ENST00000539730 | ENST00000540613 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
5UTR-intron | ENST00000539730 | ENST00000542903 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
In-frame | ENST00000394222 | ENST00000281172 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
In-frame | ENST00000394222 | ENST00000543523 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
In-frame | ENST00000394222 | ENST00000543612 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
In-frame | ENST00000471138 | ENST00000281172 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
In-frame | ENST00000471138 | ENST00000543523 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
In-frame | ENST00000471138 | ENST00000543612 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
intron-3CDS | ENST00000303097 | ENST00000281172 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
intron-3CDS | ENST00000303097 | ENST00000543523 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
intron-3CDS | ENST00000303097 | ENST00000543612 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
intron-3CDS | ENST00000535334 | ENST00000281172 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
intron-3CDS | ENST00000535334 | ENST00000543523 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
intron-3CDS | ENST00000535334 | ENST00000543612 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
intron-intron | ENST00000303097 | ENST00000540613 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
intron-intron | ENST00000303097 | ENST00000542903 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
intron-intron | ENST00000535334 | ENST00000540613 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
intron-intron | ENST00000535334 | ENST00000542903 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000394222 | ARL13B | chr3 | 93714788 | + | ENST00000543523 | EPS8 | chr12 | 15823857 | - | 3897 | 405 | 275 | 2737 | 820 |
ENST00000394222 | ARL13B | chr3 | 93714788 | + | ENST00000281172 | EPS8 | chr12 | 15823857 | - | 3893 | 405 | 275 | 2737 | 820 |
ENST00000394222 | ARL13B | chr3 | 93714788 | + | ENST00000543612 | EPS8 | chr12 | 15823857 | - | 3072 | 405 | 275 | 2737 | 820 |
ENST00000471138 | ARL13B | chr3 | 93714788 | + | ENST00000543523 | EPS8 | chr12 | 15823857 | - | 3891 | 399 | 269 | 2731 | 820 |
ENST00000471138 | ARL13B | chr3 | 93714788 | + | ENST00000281172 | EPS8 | chr12 | 15823857 | - | 3887 | 399 | 269 | 2731 | 820 |
ENST00000471138 | ARL13B | chr3 | 93714788 | + | ENST00000543612 | EPS8 | chr12 | 15823857 | - | 3066 | 399 | 269 | 2731 | 820 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000394222 | ENST00000543523 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - | 0.000555604 | 0.9994444 |
ENST00000394222 | ENST00000281172 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - | 0.000569832 | 0.9994301 |
ENST00000394222 | ENST00000543612 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - | 0.001333483 | 0.9986665 |
ENST00000471138 | ENST00000543523 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - | 0.000561809 | 0.9994382 |
ENST00000471138 | ENST00000281172 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - | 0.000575852 | 0.9994242 |
ENST00000471138 | ENST00000543612 | ARL13B | chr3 | 93714788 | + | EPS8 | chr12 | 15823857 | - | 0.001352433 | 0.99864763 |
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Fusion Genomic Features for ARL13B-EPS8 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
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Fusion Protein Features for ARL13B-EPS8 |
Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr3:93714788/chr12:15823857) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | EPS8 |
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Signaling adapter that controls various cellular protrusions by regulating actin cytoskeleton dynamics and architecture. Depending on its association with other signal transducers, can regulate different processes. Together with SOS1 and ABI1, forms a trimeric complex that participates in transduction of signals from Ras to Rac by activating the Rac-specific guanine nucleotide exchange factor (GEF) activity. Acts as a direct regulator of actin dynamics by binding actin filaments and has both barbed-end actin filament capping and actin bundling activities depending on the context. Displays barbed-end actin capping activity when associated with ABI1, thereby regulating actin-based motility process: capping activity is auto-inhibited and inhibition is relieved upon ABI1 interaction. Also shows actin bundling activity when associated with BAIAP2, enhancing BAIAP2-dependent membrane extensions and promoting filopodial protrusions. Involved in the regulation of processes such as axonal filopodia growth, stereocilia length, dendritic cell migration and cancer cell migration and invasion. Acts as a regulator of axonal filopodia formation in neurons: in the absence of neurotrophic factors, negatively regulates axonal filopodia formation via actin-capping activity. In contrast, it is phosphorylated in the presence of BDNF leading to inhibition of its actin-capping activity and stimulation of filopodia formation. Component of a complex with WHRN and MYO15A that localizes at stereocilia tips and is required for elongation of the stereocilia actin core. Indirectly involved in cell cycle progression; its degradation following ubiquitination being required during G2 phase to promote cell shape changes. {ECO:0000269|PubMed:15558031, ECO:0000269|PubMed:17115031}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000394222 | + | 2 | 10 | 28_35 | 43 | 429.0 | Nucleotide binding | GTP |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000471138 | + | 2 | 11 | 28_35 | 43 | 524.0 | Nucleotide binding | GTP |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000281172 | 2 | 21 | 421_440 | 45 | 823.0 | Compositional bias | Note=Pro-rich | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000281172 | 2 | 21 | 615_651 | 45 | 823.0 | Compositional bias | Note=Pro-rich | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000281172 | 2 | 21 | 659_664 | 45 | 823.0 | Compositional bias | Note=Poly-Ser | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543523 | 3 | 22 | 421_440 | 45 | 823.0 | Compositional bias | Note=Pro-rich | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543523 | 3 | 22 | 615_651 | 45 | 823.0 | Compositional bias | Note=Pro-rich | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543523 | 3 | 22 | 659_664 | 45 | 823.0 | Compositional bias | Note=Poly-Ser | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543612 | 2 | 21 | 421_440 | 45 | 823.0 | Compositional bias | Note=Pro-rich | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543612 | 2 | 21 | 615_651 | 45 | 823.0 | Compositional bias | Note=Pro-rich | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543612 | 2 | 21 | 659_664 | 45 | 823.0 | Compositional bias | Note=Poly-Ser | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000281172 | 2 | 21 | 381_414 | 45 | 823.0 | Domain | Note=PH%3B second part | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000281172 | 2 | 21 | 531_590 | 45 | 823.0 | Domain | SH3 | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000281172 | 2 | 21 | 69_129 | 45 | 823.0 | Domain | Note=PH%3B first part | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543523 | 3 | 22 | 381_414 | 45 | 823.0 | Domain | Note=PH%3B second part | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543523 | 3 | 22 | 531_590 | 45 | 823.0 | Domain | SH3 | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543523 | 3 | 22 | 69_129 | 45 | 823.0 | Domain | Note=PH%3B first part | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543612 | 2 | 21 | 381_414 | 45 | 823.0 | Domain | Note=PH%3B second part | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543612 | 2 | 21 | 531_590 | 45 | 823.0 | Domain | SH3 | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543612 | 2 | 21 | 69_129 | 45 | 823.0 | Domain | Note=PH%3B first part | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000281172 | 2 | 21 | 649_822 | 45 | 823.0 | Region | Effector region | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000281172 | 2 | 21 | 680_698 | 45 | 823.0 | Region | Amphipathic helix | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000281172 | 2 | 21 | 718_738 | 45 | 823.0 | Region | Helix bundle 1 | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000281172 | 2 | 21 | 762_767 | 45 | 823.0 | Region | Helix bundle 3 | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000281172 | 2 | 21 | 766_785 | 45 | 823.0 | Region | Helix bundle 4 | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543523 | 3 | 22 | 649_822 | 45 | 823.0 | Region | Effector region | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543523 | 3 | 22 | 680_698 | 45 | 823.0 | Region | Amphipathic helix | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543523 | 3 | 22 | 718_738 | 45 | 823.0 | Region | Helix bundle 1 | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543523 | 3 | 22 | 762_767 | 45 | 823.0 | Region | Helix bundle 3 | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543523 | 3 | 22 | 766_785 | 45 | 823.0 | Region | Helix bundle 4 | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543612 | 2 | 21 | 649_822 | 45 | 823.0 | Region | Effector region | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543612 | 2 | 21 | 680_698 | 45 | 823.0 | Region | Amphipathic helix | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543612 | 2 | 21 | 718_738 | 45 | 823.0 | Region | Helix bundle 1 | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543612 | 2 | 21 | 762_767 | 45 | 823.0 | Region | Helix bundle 3 | |
Tgene | EPS8 | chr3:93714788 | chr12:15823857 | ENST00000543612 | 2 | 21 | 766_785 | 45 | 823.0 | Region | Helix bundle 4 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000303097 | + | 1 | 8 | 192_245 | 0 | 322.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000394222 | + | 2 | 10 | 192_245 | 43 | 429.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000471138 | + | 2 | 11 | 192_245 | 43 | 524.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000535334 | + | 1 | 9 | 192_245 | 0 | 326.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000303097 | + | 1 | 8 | 369_419 | 0 | 322.0 | Compositional bias | Note=Pro-rich |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000394222 | + | 2 | 10 | 369_419 | 43 | 429.0 | Compositional bias | Note=Pro-rich |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000471138 | + | 2 | 11 | 369_419 | 43 | 524.0 | Compositional bias | Note=Pro-rich |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000535334 | + | 1 | 9 | 369_419 | 0 | 326.0 | Compositional bias | Note=Pro-rich |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000303097 | + | 1 | 8 | 130_133 | 0 | 322.0 | Nucleotide binding | GTP |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000303097 | + | 1 | 8 | 28_35 | 0 | 322.0 | Nucleotide binding | GTP |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000303097 | + | 1 | 8 | 71_75 | 0 | 322.0 | Nucleotide binding | GTP |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000394222 | + | 2 | 10 | 130_133 | 43 | 429.0 | Nucleotide binding | GTP |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000394222 | + | 2 | 10 | 71_75 | 43 | 429.0 | Nucleotide binding | GTP |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000471138 | + | 2 | 11 | 130_133 | 43 | 524.0 | Nucleotide binding | GTP |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000471138 | + | 2 | 11 | 71_75 | 43 | 524.0 | Nucleotide binding | GTP |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000535334 | + | 1 | 9 | 130_133 | 0 | 326.0 | Nucleotide binding | GTP |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000535334 | + | 1 | 9 | 28_35 | 0 | 326.0 | Nucleotide binding | GTP |
Hgene | ARL13B | chr3:93714788 | chr12:15823857 | ENST00000535334 | + | 1 | 9 | 71_75 | 0 | 326.0 | Nucleotide binding | GTP |
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Fusion Gene Sequence for ARL13B-EPS8 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>6549_6549_1_ARL13B-EPS8_ARL13B_chr3_93714788_ENST00000394222_EPS8_chr12_15823857_ENST00000281172_length(transcript)=3893nt_BP=405nt CGCGGGGCTTTTCTTTAGCCGGGTCCCGCTAACTCGGCTACGGTGTATCTGCGTCTTTGGTCAGGTTGTTCCTTGGCTAAGAGGGCAGTC GTCGCGGACCCACGCGGTTAGCAAGGCTTAGTGCTCGGGCCGGCCGCCTTCACTTCCCTCCCGGCTTTTCCTCCCGACTTATCCACTTTA GGGGCGTCTCGGAGTGCCGGAGGCCCCCGGGGAAGAGCGGGGTGCCGGTGTCCGCTCCGGGCTCGGATGGGAAGTGGTGGGAGGAGCGAC CCGGGATGTTCAGTCTGATGGCCAGTTGCTGCGGCTGGTTCAAGCGGTGGCGGGAGCCTGTCAGAAAGGTGACTCTTTTGATGGTGGGAC TTGATAATGCTGGTAAAACCGCAACAGCAAAGGGAATCCAAGGAGAACAAAGGAAGAATTATGCACGGGACAGTGTCAGCAGTGTGTCAG ATATATCTCAATACCGTGTTGAACACTTGACTACCTTTGTCCTGGATCGGAAAGATGCTATGATCACTGTTGATGATGGAATAAGGAAAT TGAAATTGCTTGATGCCAAGGGCAAAGTGTGGACTCAAGATATGATTCTTCAAGTGGATGACAGAGCTGTGAGCCTGATTGATTTAGAAT CAAAGAATGAACTGGAGAATTTTCCTTTAAACACAATCCAGCACTGCCAAGCTGTGATGCATTCATGCAGCTATGATTCAGTTCTTGCAC TGGTGTGCAAAGAGCCAACCCAGAACAAGCCAGATCTTCATCTCTTCCAGTGTGATGAGGTTAAGGCAAACCTAATTAGTGAAGATATTG AAAGTGCAATCAGTGACAGTAAAGGAGGGAAACAGAAGAGGCGGCCCGACGCCCTGAGGATGATTTCCAATGCAGACCCTAGTATACCGC CTCCACCCAGAGCTCCTGCCCCTGCGCCCCCTGGGACCGTCACCCAGGTGGATGTTAGAAGTCGAGTGGCAGCCTGGTCTGCATGGGCAG CCGACCAAGGGGACTTTGAGAAACCAAGGCAGTATCATGAGCAGGAAGAAACACCTGAGATGATGGCAGCCCGCATTGACAGAGATGTGC AAATCTTAAACCACATTTTGGATGACATTGAATTTTTTATCACAAAACTCCAAAAAGCAGCAGAAGCATTTTCTGAGCTTTCTAAAAGGA AGAAAAACAAGAAAGGTAAAAGGAAAGGACCAGGAGAGGGTGTTTTAACGCTGCGGGCAAAACCTCCACCTCCTGATGAATTTCTTGACT GTTTCCAAAAGTTTAAACACGGATTTAACCTTCTGGCCAAACTGAAGTCTCATATTCAGAATCCTAGTGCTGCAGATTTGGTTCACTTTT TGTTTACTCCATTAAATATGGTGGTGCAGGCAACAGGAGGTCCTGAACTAGCCAGTTCAGTACTTAGTCCCCTATTGAATAAGGACACAA TTGATTTCTTAAATTATACTGTCAATGGTGATGAACGGCAGCTGTGGATGTCATTGGGAGGAACTTGGATGAAAGCCAGAGCAGAGTGGC CAAAAGAACAGTTTATTCCACCATATGTTCCACGATTCCGCAATGGCTGGGAGCCCCCAATGCTGAACTTTATGGGAGCCACAATGGAAC AAGATCTTTATCAACTGGCAGAATCTGTGGCAAATGTAGCAGAACATCAGCGCAAACAGGAAATAAAAAGATTATCCACAGAGCATTCCA GTGTATCAGAGTATCATCCAGCCGATGGCTATGCGTTCAGTAGCAACATTTACACAAGAGGATCCCACCTGGACCAAGGGGAAGCTGCTG TTGCTTTTAAGCCAACTTCTAATCGCCATATAGATAGAAATTATGAACCACTCAAAACACAACCCAAGAAATATGCCAAATCCAAGTATG ACTTTGTAGCAAGGAACAACAGTGAGCTCTCGGTTCTAAAGGATGATATTTTAGAGATACTTGATGATCGGAAGCAATGGTGGAAAGTTC GAAATGCAAGTGGAGACTCTGGATTTGTGCCAAATAACATTTTGGATATTGTGAGACCTCCAGAATCTGGATTGGGGCGTGCTGATCCAC CTTATACTCATACTATACAGAAACAAAGGATGGAGTATGGCCCAAGACCAGCTGATACTCCCCCTGCTCCATCACCTCCTCCAACACCAG CTCCTGTTCCTGTTCCCCTTCCCCCTTCCACTCCAGCACCTGTTCCTGTGTCAAAGGTCCCAGCAAATATAACACGTCAAAACAGCAGCT CCAGTGACAGTGGTGGCAGTATCGTGCGAGACAGCCAGAGACACAAACAACTTCCGGTGGACCGAAGGAAATCTCAGATGGAGGAAGTGC AAGATGAACTCATCCACAGACTGACCATTGGTCGGAGTGCCGCTCAGAAGAAATTCCATGTGCCACGGCAGAACGTGCCAGTTATCAATA TCACTTACGACTCCACACCAGAGGATGTGAAGACGTGGTTACAGTCAAAGGGATTCAACCCTGTGACTGTCAATAGTCTTGGAGTATTAA ATGGTGCACAACTTTTCTCTCTCAATAAGGATGAACTGAGGACAGTCTGCCCTGAAGGGGCGAGAGTCTATAGCCAAATCACTGTACAAA AAGCTGCATTGGAGGATAGCAGTGGCAGCTCCGAGTTACAAGAAATTATGAGAAGACGACAGGAAAAAATCAGTGCTGCCGCTAGTGATT CAGGAGTGGAATCTTTTGATGAAGGAAGCAGTCACTAATTTGTTTGTTTGTATTTAAACTCCATTGTTTTTGGCATTATTCCAACATGCT TTGTTTTAAGAAGCCTTGAAGGGAATGTCAGATTCATTTTTCTTGATGTAATTTATCACCATAAAAAAAAACCCATGCAAACCTGAGTGA GCACAGGATTTGCTTCTAGGCCCATTATTTTTATTAAAACTGAAAAAATTTAAACTGAATTTTTTGACCTTGGAAAATATTTTTCTTACT TTACCAAGGTGAAGTTTCCTTAATTAGACTAATTATTTTATCCCCATCCCAGGGTATAAACAGGAATTGTTTTGATAGTGGTGGAGTTAT TCACTGCAACAAAGCAACAATGTTGTCCATGATTCAAAATCTAAGCAGTTTCGATTTTGCCTGTGAATATGGTGTCTGTCATTCAGGGCA TAGCTCACTGTAGGCTAGCCTCTGCTTACTTAAGTCTCTTCTCTGACATACTCAATGGAAGAATATTTAGATTTATTTAAAGTTCTTAAT GCCAACAGTTTAAAAAAAAATTAAAACATTTGAATGAACTGTAAAGTACAGCCATACCTTGGACATGCAAATATAAATCTATGGAGCATT CTCAAGAGAGTTTGTCATGGCTCTGTTGATTGCAACTCCTTGTATAGCTTGTATTTTGATTTAGTTTATATTCTGCTTATTATGTATACT GTGTTCTTATATATGAGAAAGCACAAATGCGAAAGAGGTCATGTCTTCTCAAAATCTAGCAAAGGAAGTAGTCTGCATTGGTGTGCATTA CAGTATTTTGCTTAATGAAAGCCTCAGTTCTGAATGTTGATATGAGTAGTTAAAAGGAAGTGGGGCCATTTTATGTGTTTATCTGTGTCA AGTATTTCTGGTAATAAGAAGCACTTAATTTACACATATTTTAATCCTGTGAAAGATTCCACATAGAGAAAAGAAAGATACCTAACCTTC AACAAATGTTATTTTTGGAAACACAATTTTTGTCATTAAATGTTATATTATTTCACATATATAAAACAGATGTTATGTAAGAATGTTGTA TATTTTAACATAAATCATTTAGAGAAATTATCTAGATTCATTAATTTTCATAGTGCCTTTTTCACATGAGTCAGCTGGAAAGTCTGCAAT >6549_6549_1_ARL13B-EPS8_ARL13B_chr3_93714788_ENST00000394222_EPS8_chr12_15823857_ENST00000281172_length(amino acids)=820AA_BP=43 MFSLMASCCGWFKRWREPVRKVTLLMVGLDNAGKTATAKGIQGEQRKNYARDSVSSVSDISQYRVEHLTTFVLDRKDAMITVDDGIRKLK LLDAKGKVWTQDMILQVDDRAVSLIDLESKNELENFPLNTIQHCQAVMHSCSYDSVLALVCKEPTQNKPDLHLFQCDEVKANLISEDIES AISDSKGGKQKRRPDALRMISNADPSIPPPPRAPAPAPPGTVTQVDVRSRVAAWSAWAADQGDFEKPRQYHEQEETPEMMAARIDRDVQI LNHILDDIEFFITKLQKAAEAFSELSKRKKNKKGKRKGPGEGVLTLRAKPPPPDEFLDCFQKFKHGFNLLAKLKSHIQNPSAADLVHFLF TPLNMVVQATGGPELASSVLSPLLNKDTIDFLNYTVNGDERQLWMSLGGTWMKARAEWPKEQFIPPYVPRFRNGWEPPMLNFMGATMEQD LYQLAESVANVAEHQRKQEIKRLSTEHSSVSEYHPADGYAFSSNIYTRGSHLDQGEAAVAFKPTSNRHIDRNYEPLKTQPKKYAKSKYDF VARNNSELSVLKDDILEILDDRKQWWKVRNASGDSGFVPNNILDIVRPPESGLGRADPPYTHTIQKQRMEYGPRPADTPPAPSPPPTPAP VPVPLPPSTPAPVPVSKVPANITRQNSSSSDSGGSIVRDSQRHKQLPVDRRKSQMEEVQDELIHRLTIGRSAAQKKFHVPRQNVPVINIT YDSTPEDVKTWLQSKGFNPVTVNSLGVLNGAQLFSLNKDELRTVCPEGARVYSQITVQKAALEDSSGSSELQEIMRRRQEKISAAASDSG -------------------------------------------------------------- >6549_6549_2_ARL13B-EPS8_ARL13B_chr3_93714788_ENST00000394222_EPS8_chr12_15823857_ENST00000543523_length(transcript)=3897nt_BP=405nt CGCGGGGCTTTTCTTTAGCCGGGTCCCGCTAACTCGGCTACGGTGTATCTGCGTCTTTGGTCAGGTTGTTCCTTGGCTAAGAGGGCAGTC GTCGCGGACCCACGCGGTTAGCAAGGCTTAGTGCTCGGGCCGGCCGCCTTCACTTCCCTCCCGGCTTTTCCTCCCGACTTATCCACTTTA GGGGCGTCTCGGAGTGCCGGAGGCCCCCGGGGAAGAGCGGGGTGCCGGTGTCCGCTCCGGGCTCGGATGGGAAGTGGTGGGAGGAGCGAC CCGGGATGTTCAGTCTGATGGCCAGTTGCTGCGGCTGGTTCAAGCGGTGGCGGGAGCCTGTCAGAAAGGTGACTCTTTTGATGGTGGGAC TTGATAATGCTGGTAAAACCGCAACAGCAAAGGGAATCCAAGGAGAACAAAGGAAGAATTATGCACGGGACAGTGTCAGCAGTGTGTCAG ATATATCTCAATACCGTGTTGAACACTTGACTACCTTTGTCCTGGATCGGAAAGATGCTATGATCACTGTTGATGATGGAATAAGGAAAT TGAAATTGCTTGATGCCAAGGGCAAAGTGTGGACTCAAGATATGATTCTTCAAGTGGATGACAGAGCTGTGAGCCTGATTGATTTAGAAT CAAAGAATGAACTGGAGAATTTTCCTTTAAACACAATCCAGCACTGCCAAGCTGTGATGCATTCATGCAGCTATGATTCAGTTCTTGCAC TGGTGTGCAAAGAGCCAACCCAGAACAAGCCAGATCTTCATCTCTTCCAGTGTGATGAGGTTAAGGCAAACCTAATTAGTGAAGATATTG AAAGTGCAATCAGTGACAGTAAAGGAGGGAAACAGAAGAGGCGGCCCGACGCCCTGAGGATGATTTCCAATGCAGACCCTAGTATACCGC CTCCACCCAGAGCTCCTGCCCCTGCGCCCCCTGGGACCGTCACCCAGGTGGATGTTAGAAGTCGAGTGGCAGCCTGGTCTGCATGGGCAG CCGACCAAGGGGACTTTGAGAAACCAAGGCAGTATCATGAGCAGGAAGAAACACCTGAGATGATGGCAGCCCGCATTGACAGAGATGTGC AAATCTTAAACCACATTTTGGATGACATTGAATTTTTTATCACAAAACTCCAAAAAGCAGCAGAAGCATTTTCTGAGCTTTCTAAAAGGA AGAAAAACAAGAAAGGTAAAAGGAAAGGACCAGGAGAGGGTGTTTTAACGCTGCGGGCAAAACCTCCACCTCCTGATGAATTTCTTGACT GTTTCCAAAAGTTTAAACACGGATTTAACCTTCTGGCCAAACTGAAGTCTCATATTCAGAATCCTAGTGCTGCAGATTTGGTTCACTTTT TGTTTACTCCATTAAATATGGTGGTGCAGGCAACAGGAGGTCCTGAACTAGCCAGTTCAGTACTTAGTCCCCTATTGAATAAGGACACAA TTGATTTCTTAAATTATACTGTCAATGGTGATGAACGGCAGCTGTGGATGTCATTGGGAGGAACTTGGATGAAAGCCAGAGCAGAGTGGC CAAAAGAACAGTTTATTCCACCATATGTTCCACGATTCCGCAATGGCTGGGAGCCCCCAATGCTGAACTTTATGGGAGCCACAATGGAAC AAGATCTTTATCAACTGGCAGAATCTGTGGCAAATGTAGCAGAACATCAGCGCAAACAGGAAATAAAAAGATTATCCACAGAGCATTCCA GTGTATCAGAGTATCATCCAGCCGATGGCTATGCGTTCAGTAGCAACATTTACACAAGAGGATCCCACCTGGACCAAGGGGAAGCTGCTG TTGCTTTTAAGCCAACTTCTAATCGCCATATAGATAGAAATTATGAACCACTCAAAACACAACCCAAGAAATATGCCAAATCCAAGTATG ACTTTGTAGCAAGGAACAACAGTGAGCTCTCGGTTCTAAAGGATGATATTTTAGAGATACTTGATGATCGGAAGCAATGGTGGAAAGTTC GAAATGCAAGTGGAGACTCTGGATTTGTGCCAAATAACATTTTGGATATTGTGAGACCTCCAGAATCTGGATTGGGGCGTGCTGATCCAC CTTATACTCATACTATACAGAAACAAAGGATGGAGTATGGCCCAAGACCAGCTGATACTCCCCCTGCTCCATCACCTCCTCCAACACCAG CTCCTGTTCCTGTTCCCCTTCCCCCTTCCACTCCAGCACCTGTTCCTGTGTCAAAGGTCCCAGCAAATATAACACGTCAAAACAGCAGCT CCAGTGACAGTGGTGGCAGTATCGTGCGAGACAGCCAGAGACACAAACAACTTCCGGTGGACCGAAGGAAATCTCAGATGGAGGAAGTGC AAGATGAACTCATCCACAGACTGACCATTGGTCGGAGTGCCGCTCAGAAGAAATTCCATGTGCCACGGCAGAACGTGCCAGTTATCAATA TCACTTACGACTCCACACCAGAGGATGTGAAGACGTGGTTACAGTCAAAGGGATTCAACCCTGTGACTGTCAATAGTCTTGGAGTATTAA ATGGTGCACAACTTTTCTCTCTCAATAAGGATGAACTGAGGACAGTCTGCCCTGAAGGGGCGAGAGTCTATAGCCAAATCACTGTACAAA AAGCTGCATTGGAGGATAGCAGTGGCAGCTCCGAGTTACAAGAAATTATGAGAAGACGACAGGAAAAAATCAGTGCTGCCGCTAGTGATT CAGGAGTGGAATCTTTTGATGAAGGAAGCAGTCACTAATTTGTTTGTTTGTATTTAAACTCCATTGTTTTTGGCATTATTCCAACATGCT TTGTTTTAAGAAGCCTTGAAGGGAATGTCAGATTCATTTTTCTTGATGTAATTTATCACCATAAAAAAAAACCCATGCAAACCTGAGTGA GCACAGGATTTGCTTCTAGGCCCATTATTTTTATTAAAACTGAAAAAATTTAAACTGAATTTTTTGACCTTGGAAAATATTTTTCTTACT TTACCAAGGTGAAGTTTCCTTAATTAGACTAATTATTTTATCCCCATCCCAGGGTATAAACAGGAATTGTTTTGATAGTGGTGGAGTTAT TCACTGCAACAAAGCAACAATGTTGTCCATGATTCAAAATCTAAGCAGTTTCGATTTTGCCTGTGAATATGGTGTCTGTCATTCAGGGCA TAGCTCACTGTAGGCTAGCCTCTGCTTACTTAAGTCTCTTCTCTGACATACTCAATGGAAGAATATTTAGATTTATTTAAAGTTCTTAAT GCCAACAGTTTAAAAAAAAATTAAAACATTTGAATGAACTGTAAAGTACAGCCATACCTTGGACATGCAAATATAAATCTATGGAGCATT CTCAAGAGAGTTTGTCATGGCTCTGTTGATTGCAACTCCTTGTATAGCTTGTATTTTGATTTAGTTTATATTCTGCTTATTATGTATACT GTGTTCTTATATATGAGAAAGCACAAATGCGAAAGAGGTCATGTCTTCTCAAAATCTAGCAAAGGAAGTAGTCTGCATTGGTGTGCATTA CAGTATTTTGCTTAATGAAAGCCTCAGTTCTGAATGTTGATATGAGTAGTTAAAAGGAAGTGGGGCCATTTTATGTGTTTATCTGTGTCA AGTATTTCTGGTAATAAGAAGCACTTAATTTACACATATTTTAATCCTGTGAAAGATTCCACATAGAGAAAAGAAAGATACCTAACCTTC AACAAATGTTATTTTTGGAAACACAATTTTTGTCATTAAATGTTATATTATTTCACATATATAAAACAGATGTTATGTAAGAATGTTGTA TATTTTAACATAAATCATTTAGAGAAATTATCTAGATTCATTAATTTTCATAGTGCCTTTTTCACATGAGTCAGCTGGAAAGTCTGCAAT >6549_6549_2_ARL13B-EPS8_ARL13B_chr3_93714788_ENST00000394222_EPS8_chr12_15823857_ENST00000543523_length(amino acids)=820AA_BP=43 MFSLMASCCGWFKRWREPVRKVTLLMVGLDNAGKTATAKGIQGEQRKNYARDSVSSVSDISQYRVEHLTTFVLDRKDAMITVDDGIRKLK LLDAKGKVWTQDMILQVDDRAVSLIDLESKNELENFPLNTIQHCQAVMHSCSYDSVLALVCKEPTQNKPDLHLFQCDEVKANLISEDIES AISDSKGGKQKRRPDALRMISNADPSIPPPPRAPAPAPPGTVTQVDVRSRVAAWSAWAADQGDFEKPRQYHEQEETPEMMAARIDRDVQI LNHILDDIEFFITKLQKAAEAFSELSKRKKNKKGKRKGPGEGVLTLRAKPPPPDEFLDCFQKFKHGFNLLAKLKSHIQNPSAADLVHFLF TPLNMVVQATGGPELASSVLSPLLNKDTIDFLNYTVNGDERQLWMSLGGTWMKARAEWPKEQFIPPYVPRFRNGWEPPMLNFMGATMEQD LYQLAESVANVAEHQRKQEIKRLSTEHSSVSEYHPADGYAFSSNIYTRGSHLDQGEAAVAFKPTSNRHIDRNYEPLKTQPKKYAKSKYDF VARNNSELSVLKDDILEILDDRKQWWKVRNASGDSGFVPNNILDIVRPPESGLGRADPPYTHTIQKQRMEYGPRPADTPPAPSPPPTPAP VPVPLPPSTPAPVPVSKVPANITRQNSSSSDSGGSIVRDSQRHKQLPVDRRKSQMEEVQDELIHRLTIGRSAAQKKFHVPRQNVPVINIT YDSTPEDVKTWLQSKGFNPVTVNSLGVLNGAQLFSLNKDELRTVCPEGARVYSQITVQKAALEDSSGSSELQEIMRRRQEKISAAASDSG -------------------------------------------------------------- >6549_6549_3_ARL13B-EPS8_ARL13B_chr3_93714788_ENST00000394222_EPS8_chr12_15823857_ENST00000543612_length(transcript)=3072nt_BP=405nt CGCGGGGCTTTTCTTTAGCCGGGTCCCGCTAACTCGGCTACGGTGTATCTGCGTCTTTGGTCAGGTTGTTCCTTGGCTAAGAGGGCAGTC GTCGCGGACCCACGCGGTTAGCAAGGCTTAGTGCTCGGGCCGGCCGCCTTCACTTCCCTCCCGGCTTTTCCTCCCGACTTATCCACTTTA GGGGCGTCTCGGAGTGCCGGAGGCCCCCGGGGAAGAGCGGGGTGCCGGTGTCCGCTCCGGGCTCGGATGGGAAGTGGTGGGAGGAGCGAC CCGGGATGTTCAGTCTGATGGCCAGTTGCTGCGGCTGGTTCAAGCGGTGGCGGGAGCCTGTCAGAAAGGTGACTCTTTTGATGGTGGGAC TTGATAATGCTGGTAAAACCGCAACAGCAAAGGGAATCCAAGGAGAACAAAGGAAGAATTATGCACGGGACAGTGTCAGCAGTGTGTCAG ATATATCTCAATACCGTGTTGAACACTTGACTACCTTTGTCCTGGATCGGAAAGATGCTATGATCACTGTTGATGATGGAATAAGGAAAT TGAAATTGCTTGATGCCAAGGGCAAAGTGTGGACTCAAGATATGATTCTTCAAGTGGATGACAGAGCTGTGAGCCTGATTGATTTAGAAT CAAAGAATGAACTGGAGAATTTTCCTTTAAACACAATCCAGCACTGCCAAGCTGTGATGCATTCATGCAGCTATGATTCAGTTCTTGCAC TGGTGTGCAAAGAGCCAACCCAGAACAAGCCAGATCTTCATCTCTTCCAGTGTGATGAGGTTAAGGCAAACCTAATTAGTGAAGATATTG AAAGTGCAATCAGTGACAGTAAAGGAGGGAAACAGAAGAGGCGGCCCGACGCCCTGAGGATGATTTCCAATGCAGACCCTAGTATACCGC CTCCACCCAGAGCTCCTGCCCCTGCGCCCCCTGGGACCGTCACCCAGGTGGATGTTAGAAGTCGAGTGGCAGCCTGGTCTGCATGGGCAG CCGACCAAGGGGACTTTGAGAAACCAAGGCAGTATCATGAGCAGGAAGAAACACCTGAGATGATGGCAGCCCGCATTGACAGAGATGTGC AAATCTTAAACCACATTTTGGATGACATTGAATTTTTTATCACAAAACTCCAAAAAGCAGCAGAAGCATTTTCTGAGCTTTCTAAAAGGA AGAAAAACAAGAAAGGTAAAAGGAAAGGACCAGGAGAGGGTGTTTTAACGCTGCGGGCAAAACCTCCACCTCCTGATGAATTTCTTGACT GTTTCCAAAAGTTTAAACACGGATTTAACCTTCTGGCCAAACTGAAGTCTCATATTCAGAATCCTAGTGCTGCAGATTTGGTTCACTTTT TGTTTACTCCATTAAATATGGTGGTGCAGGCAACAGGAGGTCCTGAACTAGCCAGTTCAGTACTTAGTCCCCTATTGAATAAGGACACAA TTGATTTCTTAAATTATACTGTCAATGGTGATGAACGGCAGCTGTGGATGTCATTGGGAGGAACTTGGATGAAAGCCAGAGCAGAGTGGC CAAAAGAACAGTTTATTCCACCATATGTTCCACGATTCCGCAATGGCTGGGAGCCCCCAATGCTGAACTTTATGGGAGCCACAATGGAAC AAGATCTTTATCAACTGGCAGAATCTGTGGCAAATGTAGCAGAACATCAGCGCAAACAGGAAATAAAAAGATTATCCACAGAGCATTCCA GTGTATCAGAGTATCATCCAGCCGATGGCTATGCGTTCAGTAGCAACATTTACACAAGAGGATCCCACCTGGACCAAGGGGAAGCTGCTG TTGCTTTTAAGCCAACTTCTAATCGCCATATAGATAGAAATTATGAACCACTCAAAACACAACCCAAGAAATATGCCAAATCCAAGTATG ACTTTGTAGCAAGGAACAACAGTGAGCTCTCGGTTCTAAAGGATGATATTTTAGAGATACTTGATGATCGGAAGCAATGGTGGAAAGTTC GAAATGCAAGTGGAGACTCTGGATTTGTGCCAAATAACATTTTGGATATTGTGAGACCTCCAGAATCTGGATTGGGGCGTGCTGATCCAC CTTATACTCATACTATACAGAAACAAAGGATGGAGTATGGCCCAAGACCAGCTGATACTCCCCCTGCTCCATCACCTCCTCCAACACCAG CTCCTGTTCCTGTTCCCCTTCCCCCTTCCACTCCAGCACCTGTTCCTGTGTCAAAGGTCCCAGCAAATATAACACGTCAAAACAGCAGCT CCAGTGACAGTGGTGGCAGTATCGTGCGAGACAGCCAGAGACACAAACAACTTCCGGTGGACCGAAGGAAATCTCAGATGGAGGAAGTGC AAGATGAACTCATCCACAGACTGACCATTGGTCGGAGTGCCGCTCAGAAGAAATTCCATGTGCCACGGCAGAACGTGCCAGTTATCAATA TCACTTACGACTCCACACCAGAGGATGTGAAGACGTGGTTACAGTCAAAGGGATTCAACCCTGTGACTGTCAATAGTCTTGGAGTATTAA ATGGTGCACAACTTTTCTCTCTCAATAAGGATGAACTGAGGACAGTCTGCCCTGAAGGGGCGAGAGTCTATAGCCAAATCACTGTACAAA AAGCTGCATTGGAGGATAGCAGTGGCAGCTCCGAGTTACAAGAAATTATGAGAAGACGACAGGAAAAAATCAGTGCTGCCGCTAGTGATT CAGGAGTGGAATCTTTTGATGAAGGAAGCAGTCACTAATTTGTTTGTTTGTATTTAAACTCCATTGTTTTTGGCATTATTCCAACATGCT TTGTTTTAAGAAGCCTTGAAGGGAATGTCAGATTCATTTTTCTTGATGTAATTTATCACCATAAAAAAAAACCCATGCAAACCTGAGTGA GCACAGGATTTGCTTCTAGGCCCATTATTTTTATTAAAACTGAAAAAATTTAAACTGAATTTTTTGACCTTGGAAAATATTTTTCTTACT TTACCAAGGTGAAGTTTCCTTAATTAGACTAATTATTTTATCCCCATCCCAGGGTATAAACAGGAATTGTTTTGATAGTGGTGGAGTTAT >6549_6549_3_ARL13B-EPS8_ARL13B_chr3_93714788_ENST00000394222_EPS8_chr12_15823857_ENST00000543612_length(amino acids)=820AA_BP=43 MFSLMASCCGWFKRWREPVRKVTLLMVGLDNAGKTATAKGIQGEQRKNYARDSVSSVSDISQYRVEHLTTFVLDRKDAMITVDDGIRKLK LLDAKGKVWTQDMILQVDDRAVSLIDLESKNELENFPLNTIQHCQAVMHSCSYDSVLALVCKEPTQNKPDLHLFQCDEVKANLISEDIES AISDSKGGKQKRRPDALRMISNADPSIPPPPRAPAPAPPGTVTQVDVRSRVAAWSAWAADQGDFEKPRQYHEQEETPEMMAARIDRDVQI LNHILDDIEFFITKLQKAAEAFSELSKRKKNKKGKRKGPGEGVLTLRAKPPPPDEFLDCFQKFKHGFNLLAKLKSHIQNPSAADLVHFLF TPLNMVVQATGGPELASSVLSPLLNKDTIDFLNYTVNGDERQLWMSLGGTWMKARAEWPKEQFIPPYVPRFRNGWEPPMLNFMGATMEQD LYQLAESVANVAEHQRKQEIKRLSTEHSSVSEYHPADGYAFSSNIYTRGSHLDQGEAAVAFKPTSNRHIDRNYEPLKTQPKKYAKSKYDF VARNNSELSVLKDDILEILDDRKQWWKVRNASGDSGFVPNNILDIVRPPESGLGRADPPYTHTIQKQRMEYGPRPADTPPAPSPPPTPAP VPVPLPPSTPAPVPVSKVPANITRQNSSSSDSGGSIVRDSQRHKQLPVDRRKSQMEEVQDELIHRLTIGRSAAQKKFHVPRQNVPVINIT YDSTPEDVKTWLQSKGFNPVTVNSLGVLNGAQLFSLNKDELRTVCPEGARVYSQITVQKAALEDSSGSSELQEIMRRRQEKISAAASDSG -------------------------------------------------------------- >6549_6549_4_ARL13B-EPS8_ARL13B_chr3_93714788_ENST00000471138_EPS8_chr12_15823857_ENST00000281172_length(transcript)=3887nt_BP=399nt GCTTTTCTTTAGCCGGGTCCCGCTAACTCGGCTACGGTGTATCTGCGTCTTTGGTCAGGTTGTTCCTTGGCTAAGAGGGCAGTCGTCGCG GACCCACGCGGTTAGCAAGGCTTAGTGCTCGGGCCGGCCGCCTTCACTTCCCTCCCGGCTTTTCCTCCCGACTTATCCACTTTAGGGGCG TCTCGGAGTGCCGGAGGCCCCCGGGGAAGAGCGGGGTGCCGGTGTCCGCTCCGGGCTCGGATGGGAAGTGGTGGGAGGAGCGACCCGGGA TGTTCAGTCTGATGGCCAGTTGCTGCGGCTGGTTCAAGCGGTGGCGGGAGCCTGTCAGAAAGGTGACTCTTTTGATGGTGGGACTTGATA ATGCTGGTAAAACCGCAACAGCAAAGGGAATCCAAGGAGAACAAAGGAAGAATTATGCACGGGACAGTGTCAGCAGTGTGTCAGATATAT CTCAATACCGTGTTGAACACTTGACTACCTTTGTCCTGGATCGGAAAGATGCTATGATCACTGTTGATGATGGAATAAGGAAATTGAAAT TGCTTGATGCCAAGGGCAAAGTGTGGACTCAAGATATGATTCTTCAAGTGGATGACAGAGCTGTGAGCCTGATTGATTTAGAATCAAAGA ATGAACTGGAGAATTTTCCTTTAAACACAATCCAGCACTGCCAAGCTGTGATGCATTCATGCAGCTATGATTCAGTTCTTGCACTGGTGT GCAAAGAGCCAACCCAGAACAAGCCAGATCTTCATCTCTTCCAGTGTGATGAGGTTAAGGCAAACCTAATTAGTGAAGATATTGAAAGTG CAATCAGTGACAGTAAAGGAGGGAAACAGAAGAGGCGGCCCGACGCCCTGAGGATGATTTCCAATGCAGACCCTAGTATACCGCCTCCAC CCAGAGCTCCTGCCCCTGCGCCCCCTGGGACCGTCACCCAGGTGGATGTTAGAAGTCGAGTGGCAGCCTGGTCTGCATGGGCAGCCGACC AAGGGGACTTTGAGAAACCAAGGCAGTATCATGAGCAGGAAGAAACACCTGAGATGATGGCAGCCCGCATTGACAGAGATGTGCAAATCT TAAACCACATTTTGGATGACATTGAATTTTTTATCACAAAACTCCAAAAAGCAGCAGAAGCATTTTCTGAGCTTTCTAAAAGGAAGAAAA ACAAGAAAGGTAAAAGGAAAGGACCAGGAGAGGGTGTTTTAACGCTGCGGGCAAAACCTCCACCTCCTGATGAATTTCTTGACTGTTTCC AAAAGTTTAAACACGGATTTAACCTTCTGGCCAAACTGAAGTCTCATATTCAGAATCCTAGTGCTGCAGATTTGGTTCACTTTTTGTTTA CTCCATTAAATATGGTGGTGCAGGCAACAGGAGGTCCTGAACTAGCCAGTTCAGTACTTAGTCCCCTATTGAATAAGGACACAATTGATT TCTTAAATTATACTGTCAATGGTGATGAACGGCAGCTGTGGATGTCATTGGGAGGAACTTGGATGAAAGCCAGAGCAGAGTGGCCAAAAG AACAGTTTATTCCACCATATGTTCCACGATTCCGCAATGGCTGGGAGCCCCCAATGCTGAACTTTATGGGAGCCACAATGGAACAAGATC TTTATCAACTGGCAGAATCTGTGGCAAATGTAGCAGAACATCAGCGCAAACAGGAAATAAAAAGATTATCCACAGAGCATTCCAGTGTAT CAGAGTATCATCCAGCCGATGGCTATGCGTTCAGTAGCAACATTTACACAAGAGGATCCCACCTGGACCAAGGGGAAGCTGCTGTTGCTT TTAAGCCAACTTCTAATCGCCATATAGATAGAAATTATGAACCACTCAAAACACAACCCAAGAAATATGCCAAATCCAAGTATGACTTTG TAGCAAGGAACAACAGTGAGCTCTCGGTTCTAAAGGATGATATTTTAGAGATACTTGATGATCGGAAGCAATGGTGGAAAGTTCGAAATG CAAGTGGAGACTCTGGATTTGTGCCAAATAACATTTTGGATATTGTGAGACCTCCAGAATCTGGATTGGGGCGTGCTGATCCACCTTATA CTCATACTATACAGAAACAAAGGATGGAGTATGGCCCAAGACCAGCTGATACTCCCCCTGCTCCATCACCTCCTCCAACACCAGCTCCTG TTCCTGTTCCCCTTCCCCCTTCCACTCCAGCACCTGTTCCTGTGTCAAAGGTCCCAGCAAATATAACACGTCAAAACAGCAGCTCCAGTG ACAGTGGTGGCAGTATCGTGCGAGACAGCCAGAGACACAAACAACTTCCGGTGGACCGAAGGAAATCTCAGATGGAGGAAGTGCAAGATG AACTCATCCACAGACTGACCATTGGTCGGAGTGCCGCTCAGAAGAAATTCCATGTGCCACGGCAGAACGTGCCAGTTATCAATATCACTT ACGACTCCACACCAGAGGATGTGAAGACGTGGTTACAGTCAAAGGGATTCAACCCTGTGACTGTCAATAGTCTTGGAGTATTAAATGGTG CACAACTTTTCTCTCTCAATAAGGATGAACTGAGGACAGTCTGCCCTGAAGGGGCGAGAGTCTATAGCCAAATCACTGTACAAAAAGCTG CATTGGAGGATAGCAGTGGCAGCTCCGAGTTACAAGAAATTATGAGAAGACGACAGGAAAAAATCAGTGCTGCCGCTAGTGATTCAGGAG TGGAATCTTTTGATGAAGGAAGCAGTCACTAATTTGTTTGTTTGTATTTAAACTCCATTGTTTTTGGCATTATTCCAACATGCTTTGTTT TAAGAAGCCTTGAAGGGAATGTCAGATTCATTTTTCTTGATGTAATTTATCACCATAAAAAAAAACCCATGCAAACCTGAGTGAGCACAG GATTTGCTTCTAGGCCCATTATTTTTATTAAAACTGAAAAAATTTAAACTGAATTTTTTGACCTTGGAAAATATTTTTCTTACTTTACCA AGGTGAAGTTTCCTTAATTAGACTAATTATTTTATCCCCATCCCAGGGTATAAACAGGAATTGTTTTGATAGTGGTGGAGTTATTCACTG CAACAAAGCAACAATGTTGTCCATGATTCAAAATCTAAGCAGTTTCGATTTTGCCTGTGAATATGGTGTCTGTCATTCAGGGCATAGCTC ACTGTAGGCTAGCCTCTGCTTACTTAAGTCTCTTCTCTGACATACTCAATGGAAGAATATTTAGATTTATTTAAAGTTCTTAATGCCAAC AGTTTAAAAAAAAATTAAAACATTTGAATGAACTGTAAAGTACAGCCATACCTTGGACATGCAAATATAAATCTATGGAGCATTCTCAAG AGAGTTTGTCATGGCTCTGTTGATTGCAACTCCTTGTATAGCTTGTATTTTGATTTAGTTTATATTCTGCTTATTATGTATACTGTGTTC TTATATATGAGAAAGCACAAATGCGAAAGAGGTCATGTCTTCTCAAAATCTAGCAAAGGAAGTAGTCTGCATTGGTGTGCATTACAGTAT TTTGCTTAATGAAAGCCTCAGTTCTGAATGTTGATATGAGTAGTTAAAAGGAAGTGGGGCCATTTTATGTGTTTATCTGTGTCAAGTATT TCTGGTAATAAGAAGCACTTAATTTACACATATTTTAATCCTGTGAAAGATTCCACATAGAGAAAAGAAAGATACCTAACCTTCAACAAA TGTTATTTTTGGAAACACAATTTTTGTCATTAAATGTTATATTATTTCACATATATAAAACAGATGTTATGTAAGAATGTTGTATATTTT AACATAAATCATTTAGAGAAATTATCTAGATTCATTAATTTTCATAGTGCCTTTTTCACATGAGTCAGCTGGAAAGTCTGCAATAAACAG >6549_6549_4_ARL13B-EPS8_ARL13B_chr3_93714788_ENST00000471138_EPS8_chr12_15823857_ENST00000281172_length(amino acids)=820AA_BP=43 MFSLMASCCGWFKRWREPVRKVTLLMVGLDNAGKTATAKGIQGEQRKNYARDSVSSVSDISQYRVEHLTTFVLDRKDAMITVDDGIRKLK LLDAKGKVWTQDMILQVDDRAVSLIDLESKNELENFPLNTIQHCQAVMHSCSYDSVLALVCKEPTQNKPDLHLFQCDEVKANLISEDIES AISDSKGGKQKRRPDALRMISNADPSIPPPPRAPAPAPPGTVTQVDVRSRVAAWSAWAADQGDFEKPRQYHEQEETPEMMAARIDRDVQI LNHILDDIEFFITKLQKAAEAFSELSKRKKNKKGKRKGPGEGVLTLRAKPPPPDEFLDCFQKFKHGFNLLAKLKSHIQNPSAADLVHFLF TPLNMVVQATGGPELASSVLSPLLNKDTIDFLNYTVNGDERQLWMSLGGTWMKARAEWPKEQFIPPYVPRFRNGWEPPMLNFMGATMEQD LYQLAESVANVAEHQRKQEIKRLSTEHSSVSEYHPADGYAFSSNIYTRGSHLDQGEAAVAFKPTSNRHIDRNYEPLKTQPKKYAKSKYDF VARNNSELSVLKDDILEILDDRKQWWKVRNASGDSGFVPNNILDIVRPPESGLGRADPPYTHTIQKQRMEYGPRPADTPPAPSPPPTPAP VPVPLPPSTPAPVPVSKVPANITRQNSSSSDSGGSIVRDSQRHKQLPVDRRKSQMEEVQDELIHRLTIGRSAAQKKFHVPRQNVPVINIT YDSTPEDVKTWLQSKGFNPVTVNSLGVLNGAQLFSLNKDELRTVCPEGARVYSQITVQKAALEDSSGSSELQEIMRRRQEKISAAASDSG -------------------------------------------------------------- >6549_6549_5_ARL13B-EPS8_ARL13B_chr3_93714788_ENST00000471138_EPS8_chr12_15823857_ENST00000543523_length(transcript)=3891nt_BP=399nt GCTTTTCTTTAGCCGGGTCCCGCTAACTCGGCTACGGTGTATCTGCGTCTTTGGTCAGGTTGTTCCTTGGCTAAGAGGGCAGTCGTCGCG GACCCACGCGGTTAGCAAGGCTTAGTGCTCGGGCCGGCCGCCTTCACTTCCCTCCCGGCTTTTCCTCCCGACTTATCCACTTTAGGGGCG TCTCGGAGTGCCGGAGGCCCCCGGGGAAGAGCGGGGTGCCGGTGTCCGCTCCGGGCTCGGATGGGAAGTGGTGGGAGGAGCGACCCGGGA TGTTCAGTCTGATGGCCAGTTGCTGCGGCTGGTTCAAGCGGTGGCGGGAGCCTGTCAGAAAGGTGACTCTTTTGATGGTGGGACTTGATA ATGCTGGTAAAACCGCAACAGCAAAGGGAATCCAAGGAGAACAAAGGAAGAATTATGCACGGGACAGTGTCAGCAGTGTGTCAGATATAT CTCAATACCGTGTTGAACACTTGACTACCTTTGTCCTGGATCGGAAAGATGCTATGATCACTGTTGATGATGGAATAAGGAAATTGAAAT TGCTTGATGCCAAGGGCAAAGTGTGGACTCAAGATATGATTCTTCAAGTGGATGACAGAGCTGTGAGCCTGATTGATTTAGAATCAAAGA ATGAACTGGAGAATTTTCCTTTAAACACAATCCAGCACTGCCAAGCTGTGATGCATTCATGCAGCTATGATTCAGTTCTTGCACTGGTGT GCAAAGAGCCAACCCAGAACAAGCCAGATCTTCATCTCTTCCAGTGTGATGAGGTTAAGGCAAACCTAATTAGTGAAGATATTGAAAGTG CAATCAGTGACAGTAAAGGAGGGAAACAGAAGAGGCGGCCCGACGCCCTGAGGATGATTTCCAATGCAGACCCTAGTATACCGCCTCCAC CCAGAGCTCCTGCCCCTGCGCCCCCTGGGACCGTCACCCAGGTGGATGTTAGAAGTCGAGTGGCAGCCTGGTCTGCATGGGCAGCCGACC AAGGGGACTTTGAGAAACCAAGGCAGTATCATGAGCAGGAAGAAACACCTGAGATGATGGCAGCCCGCATTGACAGAGATGTGCAAATCT TAAACCACATTTTGGATGACATTGAATTTTTTATCACAAAACTCCAAAAAGCAGCAGAAGCATTTTCTGAGCTTTCTAAAAGGAAGAAAA ACAAGAAAGGTAAAAGGAAAGGACCAGGAGAGGGTGTTTTAACGCTGCGGGCAAAACCTCCACCTCCTGATGAATTTCTTGACTGTTTCC AAAAGTTTAAACACGGATTTAACCTTCTGGCCAAACTGAAGTCTCATATTCAGAATCCTAGTGCTGCAGATTTGGTTCACTTTTTGTTTA CTCCATTAAATATGGTGGTGCAGGCAACAGGAGGTCCTGAACTAGCCAGTTCAGTACTTAGTCCCCTATTGAATAAGGACACAATTGATT TCTTAAATTATACTGTCAATGGTGATGAACGGCAGCTGTGGATGTCATTGGGAGGAACTTGGATGAAAGCCAGAGCAGAGTGGCCAAAAG AACAGTTTATTCCACCATATGTTCCACGATTCCGCAATGGCTGGGAGCCCCCAATGCTGAACTTTATGGGAGCCACAATGGAACAAGATC TTTATCAACTGGCAGAATCTGTGGCAAATGTAGCAGAACATCAGCGCAAACAGGAAATAAAAAGATTATCCACAGAGCATTCCAGTGTAT CAGAGTATCATCCAGCCGATGGCTATGCGTTCAGTAGCAACATTTACACAAGAGGATCCCACCTGGACCAAGGGGAAGCTGCTGTTGCTT TTAAGCCAACTTCTAATCGCCATATAGATAGAAATTATGAACCACTCAAAACACAACCCAAGAAATATGCCAAATCCAAGTATGACTTTG TAGCAAGGAACAACAGTGAGCTCTCGGTTCTAAAGGATGATATTTTAGAGATACTTGATGATCGGAAGCAATGGTGGAAAGTTCGAAATG CAAGTGGAGACTCTGGATTTGTGCCAAATAACATTTTGGATATTGTGAGACCTCCAGAATCTGGATTGGGGCGTGCTGATCCACCTTATA CTCATACTATACAGAAACAAAGGATGGAGTATGGCCCAAGACCAGCTGATACTCCCCCTGCTCCATCACCTCCTCCAACACCAGCTCCTG TTCCTGTTCCCCTTCCCCCTTCCACTCCAGCACCTGTTCCTGTGTCAAAGGTCCCAGCAAATATAACACGTCAAAACAGCAGCTCCAGTG ACAGTGGTGGCAGTATCGTGCGAGACAGCCAGAGACACAAACAACTTCCGGTGGACCGAAGGAAATCTCAGATGGAGGAAGTGCAAGATG AACTCATCCACAGACTGACCATTGGTCGGAGTGCCGCTCAGAAGAAATTCCATGTGCCACGGCAGAACGTGCCAGTTATCAATATCACTT ACGACTCCACACCAGAGGATGTGAAGACGTGGTTACAGTCAAAGGGATTCAACCCTGTGACTGTCAATAGTCTTGGAGTATTAAATGGTG CACAACTTTTCTCTCTCAATAAGGATGAACTGAGGACAGTCTGCCCTGAAGGGGCGAGAGTCTATAGCCAAATCACTGTACAAAAAGCTG CATTGGAGGATAGCAGTGGCAGCTCCGAGTTACAAGAAATTATGAGAAGACGACAGGAAAAAATCAGTGCTGCCGCTAGTGATTCAGGAG TGGAATCTTTTGATGAAGGAAGCAGTCACTAATTTGTTTGTTTGTATTTAAACTCCATTGTTTTTGGCATTATTCCAACATGCTTTGTTT TAAGAAGCCTTGAAGGGAATGTCAGATTCATTTTTCTTGATGTAATTTATCACCATAAAAAAAAACCCATGCAAACCTGAGTGAGCACAG GATTTGCTTCTAGGCCCATTATTTTTATTAAAACTGAAAAAATTTAAACTGAATTTTTTGACCTTGGAAAATATTTTTCTTACTTTACCA AGGTGAAGTTTCCTTAATTAGACTAATTATTTTATCCCCATCCCAGGGTATAAACAGGAATTGTTTTGATAGTGGTGGAGTTATTCACTG CAACAAAGCAACAATGTTGTCCATGATTCAAAATCTAAGCAGTTTCGATTTTGCCTGTGAATATGGTGTCTGTCATTCAGGGCATAGCTC ACTGTAGGCTAGCCTCTGCTTACTTAAGTCTCTTCTCTGACATACTCAATGGAAGAATATTTAGATTTATTTAAAGTTCTTAATGCCAAC AGTTTAAAAAAAAATTAAAACATTTGAATGAACTGTAAAGTACAGCCATACCTTGGACATGCAAATATAAATCTATGGAGCATTCTCAAG AGAGTTTGTCATGGCTCTGTTGATTGCAACTCCTTGTATAGCTTGTATTTTGATTTAGTTTATATTCTGCTTATTATGTATACTGTGTTC TTATATATGAGAAAGCACAAATGCGAAAGAGGTCATGTCTTCTCAAAATCTAGCAAAGGAAGTAGTCTGCATTGGTGTGCATTACAGTAT TTTGCTTAATGAAAGCCTCAGTTCTGAATGTTGATATGAGTAGTTAAAAGGAAGTGGGGCCATTTTATGTGTTTATCTGTGTCAAGTATT TCTGGTAATAAGAAGCACTTAATTTACACATATTTTAATCCTGTGAAAGATTCCACATAGAGAAAAGAAAGATACCTAACCTTCAACAAA TGTTATTTTTGGAAACACAATTTTTGTCATTAAATGTTATATTATTTCACATATATAAAACAGATGTTATGTAAGAATGTTGTATATTTT AACATAAATCATTTAGAGAAATTATCTAGATTCATTAATTTTCATAGTGCCTTTTTCACATGAGTCAGCTGGAAAGTCTGCAATAAACAG >6549_6549_5_ARL13B-EPS8_ARL13B_chr3_93714788_ENST00000471138_EPS8_chr12_15823857_ENST00000543523_length(amino acids)=820AA_BP=43 MFSLMASCCGWFKRWREPVRKVTLLMVGLDNAGKTATAKGIQGEQRKNYARDSVSSVSDISQYRVEHLTTFVLDRKDAMITVDDGIRKLK LLDAKGKVWTQDMILQVDDRAVSLIDLESKNELENFPLNTIQHCQAVMHSCSYDSVLALVCKEPTQNKPDLHLFQCDEVKANLISEDIES AISDSKGGKQKRRPDALRMISNADPSIPPPPRAPAPAPPGTVTQVDVRSRVAAWSAWAADQGDFEKPRQYHEQEETPEMMAARIDRDVQI LNHILDDIEFFITKLQKAAEAFSELSKRKKNKKGKRKGPGEGVLTLRAKPPPPDEFLDCFQKFKHGFNLLAKLKSHIQNPSAADLVHFLF TPLNMVVQATGGPELASSVLSPLLNKDTIDFLNYTVNGDERQLWMSLGGTWMKARAEWPKEQFIPPYVPRFRNGWEPPMLNFMGATMEQD LYQLAESVANVAEHQRKQEIKRLSTEHSSVSEYHPADGYAFSSNIYTRGSHLDQGEAAVAFKPTSNRHIDRNYEPLKTQPKKYAKSKYDF VARNNSELSVLKDDILEILDDRKQWWKVRNASGDSGFVPNNILDIVRPPESGLGRADPPYTHTIQKQRMEYGPRPADTPPAPSPPPTPAP VPVPLPPSTPAPVPVSKVPANITRQNSSSSDSGGSIVRDSQRHKQLPVDRRKSQMEEVQDELIHRLTIGRSAAQKKFHVPRQNVPVINIT YDSTPEDVKTWLQSKGFNPVTVNSLGVLNGAQLFSLNKDELRTVCPEGARVYSQITVQKAALEDSSGSSELQEIMRRRQEKISAAASDSG -------------------------------------------------------------- >6549_6549_6_ARL13B-EPS8_ARL13B_chr3_93714788_ENST00000471138_EPS8_chr12_15823857_ENST00000543612_length(transcript)=3066nt_BP=399nt GCTTTTCTTTAGCCGGGTCCCGCTAACTCGGCTACGGTGTATCTGCGTCTTTGGTCAGGTTGTTCCTTGGCTAAGAGGGCAGTCGTCGCG GACCCACGCGGTTAGCAAGGCTTAGTGCTCGGGCCGGCCGCCTTCACTTCCCTCCCGGCTTTTCCTCCCGACTTATCCACTTTAGGGGCG TCTCGGAGTGCCGGAGGCCCCCGGGGAAGAGCGGGGTGCCGGTGTCCGCTCCGGGCTCGGATGGGAAGTGGTGGGAGGAGCGACCCGGGA TGTTCAGTCTGATGGCCAGTTGCTGCGGCTGGTTCAAGCGGTGGCGGGAGCCTGTCAGAAAGGTGACTCTTTTGATGGTGGGACTTGATA ATGCTGGTAAAACCGCAACAGCAAAGGGAATCCAAGGAGAACAAAGGAAGAATTATGCACGGGACAGTGTCAGCAGTGTGTCAGATATAT CTCAATACCGTGTTGAACACTTGACTACCTTTGTCCTGGATCGGAAAGATGCTATGATCACTGTTGATGATGGAATAAGGAAATTGAAAT TGCTTGATGCCAAGGGCAAAGTGTGGACTCAAGATATGATTCTTCAAGTGGATGACAGAGCTGTGAGCCTGATTGATTTAGAATCAAAGA ATGAACTGGAGAATTTTCCTTTAAACACAATCCAGCACTGCCAAGCTGTGATGCATTCATGCAGCTATGATTCAGTTCTTGCACTGGTGT GCAAAGAGCCAACCCAGAACAAGCCAGATCTTCATCTCTTCCAGTGTGATGAGGTTAAGGCAAACCTAATTAGTGAAGATATTGAAAGTG CAATCAGTGACAGTAAAGGAGGGAAACAGAAGAGGCGGCCCGACGCCCTGAGGATGATTTCCAATGCAGACCCTAGTATACCGCCTCCAC CCAGAGCTCCTGCCCCTGCGCCCCCTGGGACCGTCACCCAGGTGGATGTTAGAAGTCGAGTGGCAGCCTGGTCTGCATGGGCAGCCGACC AAGGGGACTTTGAGAAACCAAGGCAGTATCATGAGCAGGAAGAAACACCTGAGATGATGGCAGCCCGCATTGACAGAGATGTGCAAATCT TAAACCACATTTTGGATGACATTGAATTTTTTATCACAAAACTCCAAAAAGCAGCAGAAGCATTTTCTGAGCTTTCTAAAAGGAAGAAAA ACAAGAAAGGTAAAAGGAAAGGACCAGGAGAGGGTGTTTTAACGCTGCGGGCAAAACCTCCACCTCCTGATGAATTTCTTGACTGTTTCC AAAAGTTTAAACACGGATTTAACCTTCTGGCCAAACTGAAGTCTCATATTCAGAATCCTAGTGCTGCAGATTTGGTTCACTTTTTGTTTA CTCCATTAAATATGGTGGTGCAGGCAACAGGAGGTCCTGAACTAGCCAGTTCAGTACTTAGTCCCCTATTGAATAAGGACACAATTGATT TCTTAAATTATACTGTCAATGGTGATGAACGGCAGCTGTGGATGTCATTGGGAGGAACTTGGATGAAAGCCAGAGCAGAGTGGCCAAAAG AACAGTTTATTCCACCATATGTTCCACGATTCCGCAATGGCTGGGAGCCCCCAATGCTGAACTTTATGGGAGCCACAATGGAACAAGATC TTTATCAACTGGCAGAATCTGTGGCAAATGTAGCAGAACATCAGCGCAAACAGGAAATAAAAAGATTATCCACAGAGCATTCCAGTGTAT CAGAGTATCATCCAGCCGATGGCTATGCGTTCAGTAGCAACATTTACACAAGAGGATCCCACCTGGACCAAGGGGAAGCTGCTGTTGCTT TTAAGCCAACTTCTAATCGCCATATAGATAGAAATTATGAACCACTCAAAACACAACCCAAGAAATATGCCAAATCCAAGTATGACTTTG TAGCAAGGAACAACAGTGAGCTCTCGGTTCTAAAGGATGATATTTTAGAGATACTTGATGATCGGAAGCAATGGTGGAAAGTTCGAAATG CAAGTGGAGACTCTGGATTTGTGCCAAATAACATTTTGGATATTGTGAGACCTCCAGAATCTGGATTGGGGCGTGCTGATCCACCTTATA CTCATACTATACAGAAACAAAGGATGGAGTATGGCCCAAGACCAGCTGATACTCCCCCTGCTCCATCACCTCCTCCAACACCAGCTCCTG TTCCTGTTCCCCTTCCCCCTTCCACTCCAGCACCTGTTCCTGTGTCAAAGGTCCCAGCAAATATAACACGTCAAAACAGCAGCTCCAGTG ACAGTGGTGGCAGTATCGTGCGAGACAGCCAGAGACACAAACAACTTCCGGTGGACCGAAGGAAATCTCAGATGGAGGAAGTGCAAGATG AACTCATCCACAGACTGACCATTGGTCGGAGTGCCGCTCAGAAGAAATTCCATGTGCCACGGCAGAACGTGCCAGTTATCAATATCACTT ACGACTCCACACCAGAGGATGTGAAGACGTGGTTACAGTCAAAGGGATTCAACCCTGTGACTGTCAATAGTCTTGGAGTATTAAATGGTG CACAACTTTTCTCTCTCAATAAGGATGAACTGAGGACAGTCTGCCCTGAAGGGGCGAGAGTCTATAGCCAAATCACTGTACAAAAAGCTG CATTGGAGGATAGCAGTGGCAGCTCCGAGTTACAAGAAATTATGAGAAGACGACAGGAAAAAATCAGTGCTGCCGCTAGTGATTCAGGAG TGGAATCTTTTGATGAAGGAAGCAGTCACTAATTTGTTTGTTTGTATTTAAACTCCATTGTTTTTGGCATTATTCCAACATGCTTTGTTT TAAGAAGCCTTGAAGGGAATGTCAGATTCATTTTTCTTGATGTAATTTATCACCATAAAAAAAAACCCATGCAAACCTGAGTGAGCACAG GATTTGCTTCTAGGCCCATTATTTTTATTAAAACTGAAAAAATTTAAACTGAATTTTTTGACCTTGGAAAATATTTTTCTTACTTTACCA AGGTGAAGTTTCCTTAATTAGACTAATTATTTTATCCCCATCCCAGGGTATAAACAGGAATTGTTTTGATAGTGGTGGAGTTATTCACTG >6549_6549_6_ARL13B-EPS8_ARL13B_chr3_93714788_ENST00000471138_EPS8_chr12_15823857_ENST00000543612_length(amino acids)=820AA_BP=43 MFSLMASCCGWFKRWREPVRKVTLLMVGLDNAGKTATAKGIQGEQRKNYARDSVSSVSDISQYRVEHLTTFVLDRKDAMITVDDGIRKLK LLDAKGKVWTQDMILQVDDRAVSLIDLESKNELENFPLNTIQHCQAVMHSCSYDSVLALVCKEPTQNKPDLHLFQCDEVKANLISEDIES AISDSKGGKQKRRPDALRMISNADPSIPPPPRAPAPAPPGTVTQVDVRSRVAAWSAWAADQGDFEKPRQYHEQEETPEMMAARIDRDVQI LNHILDDIEFFITKLQKAAEAFSELSKRKKNKKGKRKGPGEGVLTLRAKPPPPDEFLDCFQKFKHGFNLLAKLKSHIQNPSAADLVHFLF TPLNMVVQATGGPELASSVLSPLLNKDTIDFLNYTVNGDERQLWMSLGGTWMKARAEWPKEQFIPPYVPRFRNGWEPPMLNFMGATMEQD LYQLAESVANVAEHQRKQEIKRLSTEHSSVSEYHPADGYAFSSNIYTRGSHLDQGEAAVAFKPTSNRHIDRNYEPLKTQPKKYAKSKYDF VARNNSELSVLKDDILEILDDRKQWWKVRNASGDSGFVPNNILDIVRPPESGLGRADPPYTHTIQKQRMEYGPRPADTPPAPSPPPTPAP VPVPLPPSTPAPVPVSKVPANITRQNSSSSDSGGSIVRDSQRHKQLPVDRRKSQMEEVQDELIHRLTIGRSAAQKKFHVPRQNVPVINIT YDSTPEDVKTWLQSKGFNPVTVNSLGVLNGAQLFSLNKDELRTVCPEGARVYSQITVQKAALEDSSGSSELQEIMRRRQEKISAAASDSG -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for ARL13B-EPS8 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for ARL13B-EPS8 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for ARL13B-EPS8 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | ARL13B | C2676771 | JOUBERT SYNDROME 8 (disorder) | 4 | CTD_human;GENOMICS_ENGLAND;UNIPROT |
Hgene | ARL13B | C0431399 | Familial aplasia of the vermis | 1 | ORPHANET |
Hgene | ARL13B | C3714756 | Intellectual Disability | 1 | GENOMICS_ENGLAND |
Hgene | ARL13B | C4551568 | Joubert syndrome 1 | 1 | ORPHANET |
Tgene | C1846647 | DEAFNESS, AUTOSOMAL RECESSIVE (disorder) | 6 | CLINGEN | |
Tgene | C0027626 | Neoplasm Invasiveness | 1 | CTD_human | |
Tgene | C1857810 | Deafness, prelingual, profound (affects all frequencies) | 1 | GENOMICS_ENGLAND | |
Tgene | C3892050 | DEAFNESS, AUTOSOMAL RECESSIVE 102 | 1 | CTD_human;GENOMICS_ENGLAND |