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![]() | Fusion Gene Summary |
![]() | Fusion Gene ORF analysis |
![]() | Fusion Genomic Features |
![]() | Fusion Protein Features |
![]() | Fusion Gene Sequence |
![]() | Fusion Gene PPI analysis |
![]() | Related Drugs |
![]() | Related Diseases |
Fusion gene:CMTR1-ATG4B (FusionGDB2 ID:HG23070TG23192) |
Fusion Gene Summary for CMTR1-ATG4B |
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Fusion gene information | Fusion gene name: CMTR1-ATG4B | Fusion gene ID: hg23070tg23192 | Hgene | Tgene | Gene symbol | CMTR1 | ATG4B | Gene ID | 23070 | 23192 |
Gene name | cap methyltransferase 1 | autophagy related 4B cysteine peptidase | |
Synonyms | FTSJD2|KIAA0082|MTr1|hMTr1 | APG4B|AUTL1 | |
Cytomap | ('CMTR1')('ATG4B') 6p21.2 | 2q37.3 | |
Type of gene | protein-coding | protein-coding | |
Description | cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1FtsJ methyltransferase domain containing 2ISG95S-adenosyl-L-methionine-dependent methyltransferase FTSJD2cap1 2'O-ribose methyltransferase 1ftsJ methyltransferase domain-containing protein 2int | cysteine protease ATG4BAPG4 autophagy 4 homolog BATG4 autophagy related 4 homolog BAUT-like 1 cysteine endopeptidaseautophagin-1autophagy-related cysteine endopeptidase 1autophagy-related protein 4 homolog BhAPG4B | |
Modification date | 20200313 | 20200329 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000493656, ENST00000373451, | ||
Fusion gene scores | * DoF score | 6 X 6 X 6=216 | 4 X 4 X 3=48 |
# samples | 6 | 5 | |
** MAII score | log2(6/216*10)=-1.84799690655495 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(5/48*10)=0.0588936890535686 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: CMTR1 [Title/Abstract] AND ATG4B [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | CMTR1(37429421)-ATG4B(242594686), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | CMTR1-ATG4B seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. CMTR1-ATG4B seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. CMTR1-ATG4B seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. CMTR1-ATG4B seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | CMTR1 | GO:0006370 | 7-methylguanosine mRNA capping | 21310715 |
Hgene | CMTR1 | GO:0080009 | mRNA methylation | 20713356 |
Hgene | CMTR1 | GO:0097309 | cap1 mRNA methylation | 21310715 |
Tgene | ATG4B | GO:0006508 | proteolysis | 15169837|18387192 |
Tgene | ATG4B | GO:0006914 | autophagy | 18387192 |
Tgene | ATG4B | GO:0051697 | protein delipidation | 25327288 |
![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | STAD | TCGA-BR-8078-01A | CMTR1 | chr6 | 37429421 | + | ATG4B | chr2 | 242594686 | + |
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Fusion Gene ORF analysis for CMTR1-ATG4B |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
3UTR-3CDS | ENST00000493656 | ENST00000402096 | CMTR1 | chr6 | 37429421 | + | ATG4B | chr2 | 242594686 | + |
3UTR-3CDS | ENST00000493656 | ENST00000404914 | CMTR1 | chr6 | 37429421 | + | ATG4B | chr2 | 242594686 | + |
3UTR-3CDS | ENST00000493656 | ENST00000405546 | CMTR1 | chr6 | 37429421 | + | ATG4B | chr2 | 242594686 | + |
3UTR-intron | ENST00000493656 | ENST00000396411 | CMTR1 | chr6 | 37429421 | + | ATG4B | chr2 | 242594686 | + |
3UTR-intron | ENST00000493656 | ENST00000474739 | CMTR1 | chr6 | 37429421 | + | ATG4B | chr2 | 242594686 | + |
3UTR-intron | ENST00000493656 | ENST00000491867 | CMTR1 | chr6 | 37429421 | + | ATG4B | chr2 | 242594686 | + |
5CDS-intron | ENST00000373451 | ENST00000396411 | CMTR1 | chr6 | 37429421 | + | ATG4B | chr2 | 242594686 | + |
5CDS-intron | ENST00000373451 | ENST00000474739 | CMTR1 | chr6 | 37429421 | + | ATG4B | chr2 | 242594686 | + |
5CDS-intron | ENST00000373451 | ENST00000491867 | CMTR1 | chr6 | 37429421 | + | ATG4B | chr2 | 242594686 | + |
In-frame | ENST00000373451 | ENST00000402096 | CMTR1 | chr6 | 37429421 | + | ATG4B | chr2 | 242594686 | + |
In-frame | ENST00000373451 | ENST00000404914 | CMTR1 | chr6 | 37429421 | + | ATG4B | chr2 | 242594686 | + |
In-frame | ENST00000373451 | ENST00000405546 | CMTR1 | chr6 | 37429421 | + | ATG4B | chr2 | 242594686 | + |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000373451 | CMTR1 | chr6 | 37429421 | + | ENST00000405546 | ATG4B | chr2 | 242594686 | + | 3763 | 1356 | 50 | 2113 | 687 |
ENST00000373451 | CMTR1 | chr6 | 37429421 | + | ENST00000402096 | ATG4B | chr2 | 242594686 | + | 2553 | 1356 | 50 | 2188 | 712 |
ENST00000373451 | CMTR1 | chr6 | 37429421 | + | ENST00000404914 | ATG4B | chr2 | 242594686 | + | 3746 | 1356 | 50 | 2152 | 700 |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000373451 | ENST00000405546 | CMTR1 | chr6 | 37429421 | + | ATG4B | chr2 | 242594686 | + | 0.002102349 | 0.9978976 |
ENST00000373451 | ENST00000402096 | CMTR1 | chr6 | 37429421 | + | ATG4B | chr2 | 242594686 | + | 0.003863802 | 0.9961361 |
ENST00000373451 | ENST00000404914 | CMTR1 | chr6 | 37429421 | + | ATG4B | chr2 | 242594686 | + | 0.002084738 | 0.9979152 |
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Fusion Genomic Features for CMTR1-ATG4B |
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Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
CMTR1 | chr6 | 37429421 | + | ATG4B | chr2 | 242594685 | + | 0.00259064 | 0.9974094 |
CMTR1 | chr6 | 37429421 | + | ATG4B | chr2 | 242594685 | + | 0.00259064 | 0.9974094 |
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Fusion Protein Features for CMTR1-ATG4B |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr6:37429421/chr2:242594686) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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Hgene | Tgene |
. | . |
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | CMTR1 | chr6:37429421 | chr2:242594686 | ENST00000373451 | + | 11 | 24 | 87_133 | 397 | 836.0 | Domain | G-patch |
Hgene | CMTR1 | chr6:37429421 | chr2:242594686 | ENST00000373451 | + | 11 | 24 | 2_19 | 397 | 836.0 | Motif | Bipartite nuclear localization signal |
Hgene | CMTR1 | chr6:37429421 | chr2:242594686 | ENST00000373451 | + | 11 | 24 | 203_207 | 397 | 836.0 | Region | Substrate binding |
Hgene | CMTR1 | chr6:37429421 | chr2:242594686 | ENST00000373451 | + | 11 | 24 | 277_283 | 397 | 836.0 | Region | S-adenosyl-L-methionine binding |
Hgene | CMTR1 | chr6:37429421 | chr2:242594686 | ENST00000373451 | + | 11 | 24 | 335_336 | 397 | 836.0 | Region | S-adenosyl-L-methionine binding |
Hgene | CMTR1 | chr6:37429421 | chr2:242594686 | ENST00000373451 | + | 11 | 24 | 374_376 | 397 | 836.0 | Region | Substrate binding |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | CMTR1 | chr6:37429421 | chr2:242594686 | ENST00000373451 | + | 11 | 24 | 231_450 | 397 | 836.0 | Domain | RrmJ-type SAM-dependent 2'-O-MTase |
Hgene | CMTR1 | chr6:37429421 | chr2:242594686 | ENST00000373451 | + | 11 | 24 | 752_786 | 397 | 836.0 | Domain | WW |
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Fusion Gene Sequence for CMTR1-ATG4B |
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>17595_17595_1_CMTR1-ATG4B_CMTR1_chr6_37429421_ENST00000373451_ATG4B_chr2_242594686_ENST00000402096_length(transcript)=2553nt_BP=1356nt CGCAGTACTGGACCCGAGCGCGACGGTGCGGCTGGCGGACCCGGGCTGGCTTGTGGGGAAACGAAACTGAGGGAGGAGGCGGCGGCTCTG GCAGCGGCGGCGACAGTGTCGGCCTGACCCCCCCTCCGCTCCCCGGCAGCTCGCTCTCTCCCCTCAGCTTAACGATGAAGAGGAGAACTG ACCCAGAATGCACTGCCCCCATCAAGAAACAGAAAAAAAGAGTTGCAGAGCTTGCCCTGAGCCTCAGCTCCACGTCCGATGATGAACCTC CCTCCTCTGTCAGTCATGGAGCAAAAGCATCTACTACAAGCCTTAGTGGGTCTGATAGTGAGACCGAGGGGAAACAACACAGCTCTGACT CTTTTGACGATGCATTCAAAGCAGACTCTCTTGTGGAAGGAACTTCTTCTCGCTATTCCATGTATAATAGCGTCTCCCAGAAGCTTATGG CCAAGATGGGCTTCAGGGAAGGTGAAGGATTGGGTAAATACAGCCAGGGTCGGAAGGACATCGTTGAGGCTTCCAGTCAGAAAGGTCGAA GAGGCTTGGGTCTGACACTCCGGGGCTTTGACCAGGAGCTGAACGTGGACTGGCGAGATGAGCCAGAGCCCAGTGCTTGTGAGCAGGTGT CATGGTTTCCAGAATGTACCACTGAAATTCCTGACACTCAGGAAATGAGCGATTGGATGGTGGTGGGAAAGAGAAAGATGATTATTGAAG ATGAAACAGAGTTTTGTGGGGAAGAGCTGCTTCACAGTGTGTTGCAGTGTAAGAGCGTGTTTGATGTCTTGGATGGGGAAGAGATGCGGC GAGCTCGGACTCGGGCCAATCCCTATGAGATGATCCGAGGAGTCTTCTTTCTAAACAGGGCAGCAATGAAGATGGCTAACATGGATTTTG TATTTGATCGCATGTTCACAAATCCGCGGGACTCTTATGGGAAGCCACTGGTGAAGGACCGGGAAGCTGAGCTTCTGTACTTTGCTGATG TCTGCGCAGGCCCAGGTGGCTTCTCAGAGTATGTGCTGTGGAGGAAGAAGTGGCATGCAAAGGGCTTTGGAATGACTTTGAAGGGCCCTA ATGACTTCAAGCTGGAGGACTTCTACTCTGCTTCCAGTGAACTCTTCGAACCCTACTATGGTGAGGGTGGGATTGATGGAGATGGAGATA TCACCCGCCCAGAGAACATCTCTGCTTTTCGGAATTTTGTCCTGGATAACACAGATCGCAAGGGTGTCCATTTTCTGATGGCTGATGGGG GTTTCTCGGTGGAGGGGCAGGAGAACCTGCAGGAGATCCTCAGCAAGCAGCTGCTTCTGTGTCAGTTCCTCATGGCGCTGTCCATTGTCC GGACAGCGCAAATGGGAGTTGGCGAAGGCAAGTCCATAGGCCAGTGGTACGGGCCCAACACTGTCGCCCAGGTCCTGAAGAAGCTTGCTG TCTTCGATACGTGGAGCTCCTTGGCGGTCCACATTGCAATGGACAACACTGTTGTGATGGAGGAAATCAGAAGGTTGTGCAGGACCAGCG TTCCCTGTGCAGGCGCCACTGCGTTTCCTGCAGATTCCGACCGGCACTGCAACGGATTCCCTGCCGGAGCTGAGGTCACCAACAGGCCGT CGCCATGGAGACCCCTGGTACTTCTCATTCCCCTGCGCCTGGGGCTCACGGACATCAACGAGGCCTACGTGGAGACGCTGAAGCACTGCT TCATGATGCCCCAGTCCCTGGGCGTCATCGGAGGGAAGCCCAACAGCGCCCACTACTTCATCGGCTACGTTGGTGAGGAGCTCATCTACC TGGACCCCCACACCACGCAGCCAGCCGTGGAGCCCACTGATGGCTGCTTCATCCCGGACGAGAGCTTCCACTGCCAGCACCCGCCGTGCC GCATGAGCATCGCGGAGCTTGACCCGTCCATCGCTGTGGGGTTTTTCTGTAAGACTGAAGATGACTTCAATGATTGGTGCCAGCAAGTCA AAAAGCTGTCTCTGCTTGGAGGTGCCCTGCCCATGTTTGAGCTGGTGGAGCTGCAGCCTTCACATCTGGCCTGCCCCGACGTCCTGAACC TGTCCCTAGGTGAGAGCTGCCAAGTCCAGGTGGGGTCCCTCGGAGATTCTTCTGATGTAGAGCGACTGGAAAGATTCTTCGACTCAGAAG ATGAAGACTTTGAAATCCTGTCCCTTTGAAAATCCTGGGGTCGGGGGTGGCACCTGTGAGAGCCTGGGGCTCCTGGTGCCGCTGCGTTTC ATCCATCCCGCCCGCTCGCCTGCCGAGGGCTGCGCCCCGTGCTGCCTCCCCCCAGAGGGCCACCCGCTGTGCTCGTGGACTGAGGCTGCG CTGCCCGGGAGGCCTTACTGCTTGGTGTCAGACTGCCCAGCTCAGAGTGCCCGTCAGGGCCTGTGCATCCGCACGCGGAGCCGTCTGTTA GGAGCTTCCAGAGTGTTCTCTCGACACTGCCAGCCCCGTGTTAGCACCTGGGCCTCAGTCCCACTTGCTCCCAGGCGCCGGTTCTGTGGT >17595_17595_1_CMTR1-ATG4B_CMTR1_chr6_37429421_ENST00000373451_ATG4B_chr2_242594686_ENST00000402096_length(amino acids)=712AA_BP=435 MWGNETEGGGGGSGSGGDSVGLTPPPLPGSSLSPLSLTMKRRTDPECTAPIKKQKKRVAELALSLSSTSDDEPPSSVSHGAKASTTSLSG SDSETEGKQHSSDSFDDAFKADSLVEGTSSRYSMYNSVSQKLMAKMGFREGEGLGKYSQGRKDIVEASSQKGRRGLGLTLRGFDQELNVD WRDEPEPSACEQVSWFPECTTEIPDTQEMSDWMVVGKRKMIIEDETEFCGEELLHSVLQCKSVFDVLDGEEMRRARTRANPYEMIRGVFF LNRAAMKMANMDFVFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGFSEYVLWRKKWHAKGFGMTLKGPNDFKLEDFYSASSELFE PYYGEGGIDGDGDITRPENISAFRNFVLDNTDRKGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTAQMGVGEGKSIGQWY GPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLT DINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPDESFHCQHPPCRMSIAELDPSIAVGFFC -------------------------------------------------------------- >17595_17595_2_CMTR1-ATG4B_CMTR1_chr6_37429421_ENST00000373451_ATG4B_chr2_242594686_ENST00000404914_length(transcript)=3746nt_BP=1356nt CGCAGTACTGGACCCGAGCGCGACGGTGCGGCTGGCGGACCCGGGCTGGCTTGTGGGGAAACGAAACTGAGGGAGGAGGCGGCGGCTCTG GCAGCGGCGGCGACAGTGTCGGCCTGACCCCCCCTCCGCTCCCCGGCAGCTCGCTCTCTCCCCTCAGCTTAACGATGAAGAGGAGAACTG ACCCAGAATGCACTGCCCCCATCAAGAAACAGAAAAAAAGAGTTGCAGAGCTTGCCCTGAGCCTCAGCTCCACGTCCGATGATGAACCTC CCTCCTCTGTCAGTCATGGAGCAAAAGCATCTACTACAAGCCTTAGTGGGTCTGATAGTGAGACCGAGGGGAAACAACACAGCTCTGACT CTTTTGACGATGCATTCAAAGCAGACTCTCTTGTGGAAGGAACTTCTTCTCGCTATTCCATGTATAATAGCGTCTCCCAGAAGCTTATGG CCAAGATGGGCTTCAGGGAAGGTGAAGGATTGGGTAAATACAGCCAGGGTCGGAAGGACATCGTTGAGGCTTCCAGTCAGAAAGGTCGAA GAGGCTTGGGTCTGACACTCCGGGGCTTTGACCAGGAGCTGAACGTGGACTGGCGAGATGAGCCAGAGCCCAGTGCTTGTGAGCAGGTGT CATGGTTTCCAGAATGTACCACTGAAATTCCTGACACTCAGGAAATGAGCGATTGGATGGTGGTGGGAAAGAGAAAGATGATTATTGAAG ATGAAACAGAGTTTTGTGGGGAAGAGCTGCTTCACAGTGTGTTGCAGTGTAAGAGCGTGTTTGATGTCTTGGATGGGGAAGAGATGCGGC GAGCTCGGACTCGGGCCAATCCCTATGAGATGATCCGAGGAGTCTTCTTTCTAAACAGGGCAGCAATGAAGATGGCTAACATGGATTTTG TATTTGATCGCATGTTCACAAATCCGCGGGACTCTTATGGGAAGCCACTGGTGAAGGACCGGGAAGCTGAGCTTCTGTACTTTGCTGATG TCTGCGCAGGCCCAGGTGGCTTCTCAGAGTATGTGCTGTGGAGGAAGAAGTGGCATGCAAAGGGCTTTGGAATGACTTTGAAGGGCCCTA ATGACTTCAAGCTGGAGGACTTCTACTCTGCTTCCAGTGAACTCTTCGAACCCTACTATGGTGAGGGTGGGATTGATGGAGATGGAGATA TCACCCGCCCAGAGAACATCTCTGCTTTTCGGAATTTTGTCCTGGATAACACAGATCGCAAGGGTGTCCATTTTCTGATGGCTGATGGGG GTTTCTCGGTGGAGGGGCAGGAGAACCTGCAGGAGATCCTCAGCAAGCAGCTGCTTCTGTGTCAGTTCCTCATGGCGCTGTCCATTGTCC GGACAGCGCAAATGGGAGTTGGCGAAGGCAAGTCCATAGGCCAGTGGTACGGGCCCAACACTGTCGCCCAGGTCCTGAAGAAGCTTGCTG TCTTCGATACGTGGAGCTCCTTGGCGGTCCACATTGCAATGGACAACACTGTTGTGATGGAGGAAATCAGAAGGTTGTGCAGGACCAGCG TTCCCTGTGCAGGCGCCACTGCGTTTCCTGCAGATTCCGACCGGCACTGCAACGGATTCCCTGCCGGAGCTGAGGTCACCAACAGGCCGT CGCCATGGAGACCCCTGGTACTTCTCATTCCCCTGCGCCTGGGGCTCACGGACATCAACGAGGCCTACGTGGAGACGCTGAAGCACTGCT TCATGATGCCCCAGTCCCTGGGCGTCATCGGAGGGAAGCCCAACAGCGCCCACTACTTCATCGGCTACGTTGGTGAGGAGCTCATCTACC TGGACCCCCACACCACGCAGCCAGCCGTGGAGCCCACTGATGGCTGCTTCATCCCGGACGAGAGCTTCCACTGCCAGCACCCGCCGTGCC GCATGAGCATCGCGGAGCTTGACCCGTCCATCGCTGTGGGGTTTTTCTGTAAGACTGAAGATGACTTCAATGATTGGTGCCAGCAAGTCA AAAAGCTGTCTCTGCTTGGAGGTGCCCTGCCCATGTTTGAGCTGGTGGAGCTGCAGCCTTCACATCTGGCCTGCCCCGACGTCCTGAACC TGTCCCTAGATTCTTCTGATGTAGAGCGACTGGAAAGATTCTTCGACTCAGAAGATGAAGACTTTGAAATCCTGTCCCTTTGAAAATCCT GGGGTCGGGGGTGGCACCTGTGAGAGCCTGGGGCTCCTGGTGCCGCTGCGTTTCATCCATCCCGCCCGCTCGCCTGCCGAGGGCTGCGCC CCGTGCTGCCTCCCCCCAGAGGGCCACCCGCTGTGCTCGTGGACTGAGGCTGCGCTGCCCGGGAGGCCTTACTGCTTGGTGTCAGACTGC CCAGCTCAGAGTGCCCGTCAGGGCCTGTGCATCCGCACGCGGAGCCGTCTGTTAGGAGCTTCCAGAGTGTTCTCTCGACACTGCCAGCCC CGTGTTAGCACCTGGGCCTCAGTCCCACTTGCTCCCAGGCGCCGGTTCTGTGGTTGGTTTGGAATTAAAGTCCTGTTTGAAGTTGTCAGA CACAGACATGAATTTCTGGGCGCTCCCTGAGTCAGAGTCTCAGAAGACCTGTGCAGGCTGGCGTGAGAGGAGCGGCAGCCACACTGCGGC CCCACGCCCAAGGACTGGGCTGCTCTCGAGGGGGGCGCGCCCACCGCTGTGTCCTCTCTGCCCAGCCTGGCTTACCAAGGGCTACCTCAG TGGGAGATGAGGTTGGAGGAACGAAGGCGAGGTTCCTCCTTGCTTTGGGGAGAAAAGTATTCAGGAAGTGGGTGTGTGGGAAACCTGAAG ATGGCGTGCACAGGACACAGCGTGGGCGGCCTGGGCAGAAGGGCGGCTGGCTGTCCTGGAGCTGCTGCTGGAGCCTGCCCTCAGAGTGTC CCTTTCCAGTGCTGTGGCATTCTGTGGCAGCTTCCCCAGGTGTGGTGACGGGGGGGGGGCGGGGCCTCCACCTGTGACAGCCAGGCTTGA GGGTGGACGGCGTGCCTCTCCCAGGAGCCTTCCCCATGTCCTTGCCTTGCTGAGAATTGCCCTCCCATGCCGCTGAGGTGTTAGGTGGTT TAGGGCCAAAAGGGGAAAACCACTTGAGTCTTGTGGTGTGTGGTGGGCAGACACCACAGGGTGGCATCACCTGGTGGCATTTCCAGAACC TCAGCCCCGATTCCAGCACCCACCACCGCCTGACCCTGTGTAACCTGCTGTCCCGGGTCCCAGAGTGCACTCTGCCCCGCTGCTCTGCTG CCTGTCCTGGGAAAGTATCTTTGCCCCACTAGGAAATGTAAACAGGAGGGCTTGGGGAGCGTGGGCACTTTTCTCATGAGCAGCTACTGC GGCGTTGGCAGGACTCGCTGCTGCTGCTGCTGCTTGTGTAGGTCGGGGAGCCAGAGATCCCCGAGGACGCGCGCCGGACAGTCGGCACTG ACCGGCCCACCTGGTAGCAGAGGACACCCCCAGCCCCCCAAGCATTGAAGACATAGTGTATTTCCTCGTATCCTTTCTCCCTTGGGTGTA GTTGGGGTGGGGAAGCAGGGAAGGCTGGTGCGATCTCCATTCCTTGGGCTCCACGTCCGAGTTCATGGTGCGCCGCTGTGCTGGGAGCTG CAGTGGTAATGTGTGGGACACCTTGACCAAAGGGGAGCTTTGTCTCGTGTGTTTTGAAAAAGGCTTAATGAAGAGAATGTTGTTCATTCT >17595_17595_2_CMTR1-ATG4B_CMTR1_chr6_37429421_ENST00000373451_ATG4B_chr2_242594686_ENST00000404914_length(amino acids)=700AA_BP=435 MWGNETEGGGGGSGSGGDSVGLTPPPLPGSSLSPLSLTMKRRTDPECTAPIKKQKKRVAELALSLSSTSDDEPPSSVSHGAKASTTSLSG SDSETEGKQHSSDSFDDAFKADSLVEGTSSRYSMYNSVSQKLMAKMGFREGEGLGKYSQGRKDIVEASSQKGRRGLGLTLRGFDQELNVD WRDEPEPSACEQVSWFPECTTEIPDTQEMSDWMVVGKRKMIIEDETEFCGEELLHSVLQCKSVFDVLDGEEMRRARTRANPYEMIRGVFF LNRAAMKMANMDFVFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGFSEYVLWRKKWHAKGFGMTLKGPNDFKLEDFYSASSELFE PYYGEGGIDGDGDITRPENISAFRNFVLDNTDRKGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTAQMGVGEGKSIGQWY GPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLT DINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPDESFHCQHPPCRMSIAELDPSIAVGFFC -------------------------------------------------------------- >17595_17595_3_CMTR1-ATG4B_CMTR1_chr6_37429421_ENST00000373451_ATG4B_chr2_242594686_ENST00000405546_length(transcript)=3763nt_BP=1356nt CGCAGTACTGGACCCGAGCGCGACGGTGCGGCTGGCGGACCCGGGCTGGCTTGTGGGGAAACGAAACTGAGGGAGGAGGCGGCGGCTCTG GCAGCGGCGGCGACAGTGTCGGCCTGACCCCCCCTCCGCTCCCCGGCAGCTCGCTCTCTCCCCTCAGCTTAACGATGAAGAGGAGAACTG ACCCAGAATGCACTGCCCCCATCAAGAAACAGAAAAAAAGAGTTGCAGAGCTTGCCCTGAGCCTCAGCTCCACGTCCGATGATGAACCTC CCTCCTCTGTCAGTCATGGAGCAAAAGCATCTACTACAAGCCTTAGTGGGTCTGATAGTGAGACCGAGGGGAAACAACACAGCTCTGACT CTTTTGACGATGCATTCAAAGCAGACTCTCTTGTGGAAGGAACTTCTTCTCGCTATTCCATGTATAATAGCGTCTCCCAGAAGCTTATGG CCAAGATGGGCTTCAGGGAAGGTGAAGGATTGGGTAAATACAGCCAGGGTCGGAAGGACATCGTTGAGGCTTCCAGTCAGAAAGGTCGAA GAGGCTTGGGTCTGACACTCCGGGGCTTTGACCAGGAGCTGAACGTGGACTGGCGAGATGAGCCAGAGCCCAGTGCTTGTGAGCAGGTGT CATGGTTTCCAGAATGTACCACTGAAATTCCTGACACTCAGGAAATGAGCGATTGGATGGTGGTGGGAAAGAGAAAGATGATTATTGAAG ATGAAACAGAGTTTTGTGGGGAAGAGCTGCTTCACAGTGTGTTGCAGTGTAAGAGCGTGTTTGATGTCTTGGATGGGGAAGAGATGCGGC GAGCTCGGACTCGGGCCAATCCCTATGAGATGATCCGAGGAGTCTTCTTTCTAAACAGGGCAGCAATGAAGATGGCTAACATGGATTTTG TATTTGATCGCATGTTCACAAATCCGCGGGACTCTTATGGGAAGCCACTGGTGAAGGACCGGGAAGCTGAGCTTCTGTACTTTGCTGATG TCTGCGCAGGCCCAGGTGGCTTCTCAGAGTATGTGCTGTGGAGGAAGAAGTGGCATGCAAAGGGCTTTGGAATGACTTTGAAGGGCCCTA ATGACTTCAAGCTGGAGGACTTCTACTCTGCTTCCAGTGAACTCTTCGAACCCTACTATGGTGAGGGTGGGATTGATGGAGATGGAGATA TCACCCGCCCAGAGAACATCTCTGCTTTTCGGAATTTTGTCCTGGATAACACAGATCGCAAGGGTGTCCATTTTCTGATGGCTGATGGGG GTTTCTCGGTGGAGGGGCAGGAGAACCTGCAGGAGATCCTCAGCAAGCAGCTGCTTCTGTGTCAGTTCCTCATGGCGCTGTCCATTGTCC GGACAGCGCAAATGGGAGTTGGCGAAGGCAAGTCCATAGGCCAGTGGTACGGGCCCAACACTGTCGCCCAGGTCCTGAAGAAGCTTGCTG TCTTCGATACGTGGAGCTCCTTGGCGGTCCACATTGCAATGGACAACACTGTTGTGATGGAGGAAATCAGAAGGTTGTGCAGGACCAGCG TTCCCTGTGCAGGCGCCACTGCGTTTCCTGCAGATTCCGACCGGCACTGCAACGGATTCCCTGCCGGAGCTGAGGTCACCAACAGGCCGT CGCCATGGAGACCCCTGGTACTTCTCATTCCCCTGCGCCTGGGGCTCACGGACATCAACGAGGCCTACGTGGAGACGCTGAAGCACTGCT TCATGATGCCCCAGTCCCTGGGCGTCATCGGAGGGAAGCCCAACAGCGCCCACTACTTCATCGGCTACGTTGGTGAGGAGCTCATCTACC TGGACCCCCACACCACGCAGCCAGCCGTGGAGCCCACTGATGGCTGCTTCATCCCGGACGAGAGCTTCCACTGCCAGCACCCGCCGTGCC GCATGAGCATCGCGGAGCTTGACCCGTCCATCGCTGTGGGGTTTTTCTGTAAGACTGAAGATGACTTCAATGATTGGTGCCAGCAAGTCA AAAAGCTGTCTCTGCTTGGAGGTGCCCTGCCCATGTTTGAGCTGGTGGAGCTGCAGCCTTCACATCTGGCCTGCCCCGACGTCCTGAACC TGTCCCTAGGTGAGAGCTGCCAAGTCCAGATTCTTCTGATGTAGAGCGACTGGAAAGATTCTTCGACTCAGAAGATGAAGACTTTGAAAT CCTGTCCCTTTGAAAATCCTGGGGTCGGGGGTGGCACCTGTGAGAGCCTGGGGCTCCTGGTGCCGCTGCGTTTCATCCATCCCGCCCGCT CGCCTGCCGAGGGCTGCGCCCCGTGCTGCCTCCCCCCAGAGGGCCACCCGCTGTGCTCGTGGACTGAGGCTGCGCTGCCCGGGAGGCCTT ACTGCTTGGTGTCAGACTGCCCAGCTCAGAGTGCCCGTCAGGGCCTGTGCATCCGCACGCGGAGCCGTCTGTTAGGAGCTTCCAGAGTGT TCTCTCGACACTGCCAGCCCCGTGTTAGCACCTGGGCCTCAGTCCCACTTGCTCCCAGGCGCCGGTTCTGTGGTTGGTTTGGAATTAAAG TCCTGTTTGAAGTTGTCAGACACAGACATGAATTTCTGGGCGCTCCCTGAGTCAGAGTCTCAGAAGACCTGTGCAGGCTGGCGTGAGAGG AGCGGCAGCCACACTGCGGCCCCACGCCCAAGGACTGGGCTGCTCTCGAGGGGGGCGCGCCCACCGCTGTGTCCTCTCTGCCCAGCCTGG CTTACCAAGGGCTACCTCAGTGGGAGATGAGGTTGGAGGAACGAAGGCGAGGTTCCTCCTTGCTTTGGGGAGAAAAGTATTCAGGAAGTG GGTGTGTGGGAAACCTGAAGATGGCGTGCACAGGACACAGCGTGGGCGGCCTGGGCAGAAGGGCGGCTGGCTGTCCTGGAGCTGCTGCTG GAGCCTGCCCTCAGAGTGTCCCTTTCCAGTGCTGTGGCATTCTGTGGCAGCTTCCCCAGGTGTGGTGACGGGGGGGGGGCGGGGCCTCCA CCTGTGACAGCCAGGCTTGAGGGTGGACGGCGTGCCTCTCCCAGGAGCCTTCCCCATGTCCTTGCCTTGCTGAGAATTGCCCTCCCATGC CGCTGAGGTGTTAGGTGGTTTAGGGCCAAAAGGGGAAAACCACTTGAGTCTTGTGGTGTGTGGTGGGCAGACACCACAGGGTGGCATCAC CTGGTGGCATTTCCAGAACCTCAGCCCCGATTCCAGCACCCACCACCGCCTGACCCTGTGTAACCTGCTGTCCCGGGTCCCAGAGTGCAC TCTGCCCCGCTGCTCTGCTGCCTGTCCTGGGAAAGTATCTTTGCCCCACTAGGAAATGTAAACAGGAGGGCTTGGGGAGCGTGGGCACTT TTCTCATGAGCAGCTACTGCGGCGTTGGCAGGACTCGCTGCTGCTGCTGCTGCTTGTGTAGGTCGGGGAGCCAGAGATCCCCGAGGACGC GCGCCGGACAGTCGGCACTGACCGGCCCACCTGGTAGCAGAGGACACCCCCAGCCCCCCAAGCATTGAAGACATAGTGTATTTCCTCGTA TCCTTTCTCCCTTGGGTGTAGTTGGGGTGGGGAAGCAGGGAAGGCTGGTGCGATCTCCATTCCTTGGGCTCCACGTCCGAGTTCATGGTG CGCCGCTGTGCTGGGAGCTGCAGTGGTAATGTGTGGGACACCTTGACCAAAGGGGAGCTTTGTCTCGTGTGTTTTGAAAAAGGCTTAATG >17595_17595_3_CMTR1-ATG4B_CMTR1_chr6_37429421_ENST00000373451_ATG4B_chr2_242594686_ENST00000405546_length(amino acids)=687AA_BP=435 MWGNETEGGGGGSGSGGDSVGLTPPPLPGSSLSPLSLTMKRRTDPECTAPIKKQKKRVAELALSLSSTSDDEPPSSVSHGAKASTTSLSG SDSETEGKQHSSDSFDDAFKADSLVEGTSSRYSMYNSVSQKLMAKMGFREGEGLGKYSQGRKDIVEASSQKGRRGLGLTLRGFDQELNVD WRDEPEPSACEQVSWFPECTTEIPDTQEMSDWMVVGKRKMIIEDETEFCGEELLHSVLQCKSVFDVLDGEEMRRARTRANPYEMIRGVFF LNRAAMKMANMDFVFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGFSEYVLWRKKWHAKGFGMTLKGPNDFKLEDFYSASSELFE PYYGEGGIDGDGDITRPENISAFRNFVLDNTDRKGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTAQMGVGEGKSIGQWY GPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLT DINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPDESFHCQHPPCRMSIAELDPSIAVGFFC -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for CMTR1-ATG4B |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Hgene | CMTR1 | chr6:37429421 | chr2:242594686 | ENST00000373451 | + | 11 | 24 | 727_835 | 397.3333333333333 | 836.0 | POLR2A |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for CMTR1-ATG4B |
![]() (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for CMTR1-ATG4B |
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Partner | Gene | Disease ID | Disease name | # pubmeds | Source |