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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:ASTN2-TMEM38B (FusionGDB2 ID:HG23245TG55151) |
Fusion Gene Summary for ASTN2-TMEM38B |
Fusion gene summary |
Fusion gene information | Fusion gene name: ASTN2-TMEM38B | Fusion gene ID: hg23245tg55151 | Hgene | Tgene | Gene symbol | ASTN2 | TMEM38B | Gene ID | 23245 | 55151 |
Gene name | astrotactin 2 | transmembrane protein 38B | |
Synonyms | bA67K19.1 | C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 | |
Cytomap | ('ASTN2')('TMEM38B') 9q33.1 | 9q31.2 | |
Type of gene | protein-coding | protein-coding | |
Description | astrotactin-2 | trimeric intracellular cation channel type B | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000313400, ENST00000361209, ENST00000373996, ENST00000361477, ENST00000288520, ENST00000341734, ENST00000358637, | ||
Fusion gene scores | * DoF score | 16 X 19 X 6=1824 | 7 X 5 X 6=210 |
# samples | 19 | 7 | |
** MAII score | log2(19/1824*10)=-3.26303440583379 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(7/210*10)=-1.58496250072116 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: ASTN2 [Title/Abstract] AND TMEM38B [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | ASTN2(119858323)-TMEM38B(108467878), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | ASTN2-TMEM38B seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. ASTN2-TMEM38B seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene breakpoints across ASTN2 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across TMEM38B (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | LGG | TCGA-DU-A6S7-01A | ASTN2 | chr9 | 119858323 | - | TMEM38B | chr9 | 108467878 | + |
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Fusion Gene ORF analysis for ASTN2-TMEM38B |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-5UTR | ENST00000313400 | ENST00000374688 | ASTN2 | chr9 | 119858323 | - | TMEM38B | chr9 | 108467878 | + |
5CDS-5UTR | ENST00000361209 | ENST00000374688 | ASTN2 | chr9 | 119858323 | - | TMEM38B | chr9 | 108467878 | + |
5CDS-5UTR | ENST00000373996 | ENST00000374688 | ASTN2 | chr9 | 119858323 | - | TMEM38B | chr9 | 108467878 | + |
5UTR-3CDS | ENST00000361477 | ENST00000374692 | ASTN2 | chr9 | 119858323 | - | TMEM38B | chr9 | 108467878 | + |
5UTR-5UTR | ENST00000361477 | ENST00000374688 | ASTN2 | chr9 | 119858323 | - | TMEM38B | chr9 | 108467878 | + |
In-frame | ENST00000313400 | ENST00000374692 | ASTN2 | chr9 | 119858323 | - | TMEM38B | chr9 | 108467878 | + |
In-frame | ENST00000361209 | ENST00000374692 | ASTN2 | chr9 | 119858323 | - | TMEM38B | chr9 | 108467878 | + |
In-frame | ENST00000373996 | ENST00000374692 | ASTN2 | chr9 | 119858323 | - | TMEM38B | chr9 | 108467878 | + |
intron-3CDS | ENST00000288520 | ENST00000374692 | ASTN2 | chr9 | 119858323 | - | TMEM38B | chr9 | 108467878 | + |
intron-3CDS | ENST00000341734 | ENST00000374692 | ASTN2 | chr9 | 119858323 | - | TMEM38B | chr9 | 108467878 | + |
intron-3CDS | ENST00000358637 | ENST00000374692 | ASTN2 | chr9 | 119858323 | - | TMEM38B | chr9 | 108467878 | + |
intron-5UTR | ENST00000288520 | ENST00000374688 | ASTN2 | chr9 | 119858323 | - | TMEM38B | chr9 | 108467878 | + |
intron-5UTR | ENST00000341734 | ENST00000374688 | ASTN2 | chr9 | 119858323 | - | TMEM38B | chr9 | 108467878 | + |
intron-5UTR | ENST00000358637 | ENST00000374688 | ASTN2 | chr9 | 119858323 | - | TMEM38B | chr9 | 108467878 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000373996 | ASTN2 | chr9 | 119858323 | - | ENST00000374692 | TMEM38B | chr9 | 108467878 | + | 4572 | 1276 | 0 | 2039 | 679 |
ENST00000313400 | ASTN2 | chr9 | 119858323 | - | ENST00000374692 | TMEM38B | chr9 | 108467878 | + | 4673 | 1377 | 101 | 2140 | 679 |
ENST00000361209 | ASTN2 | chr9 | 119858323 | - | ENST00000374692 | TMEM38B | chr9 | 108467878 | + | 4551 | 1255 | 132 | 2018 | 628 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000373996 | ENST00000374692 | ASTN2 | chr9 | 119858323 | - | TMEM38B | chr9 | 108467878 | + | 0.001417675 | 0.99858236 |
ENST00000313400 | ENST00000374692 | ASTN2 | chr9 | 119858323 | - | TMEM38B | chr9 | 108467878 | + | 0.001673894 | 0.9983261 |
ENST00000361209 | ENST00000374692 | ASTN2 | chr9 | 119858323 | - | TMEM38B | chr9 | 108467878 | + | 0.002093944 | 0.9979061 |
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Fusion Genomic Features for ASTN2-TMEM38B |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
ASTN2 | chr9 | 119858322 | - | TMEM38B | chr9 | 108467877 | + | 0.000153136 | 0.9998468 |
ASTN2 | chr9 | 119858322 | - | TMEM38B | chr9 | 108467877 | + | 0.000153136 | 0.9998468 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for ASTN2-TMEM38B |
Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr9:119858323/chr9:108467878) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | . |
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000313400 | - | 5 | 23 | 50_206 | 425 | 1340.0 | Topological domain | Lumenal |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000361209 | - | 4 | 22 | 50_206 | 374 | 1289.0 | Topological domain | Lumenal |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000373996 | - | 5 | 23 | 50_206 | 425 | 1336.0 | Topological domain | Lumenal |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000313400 | - | 5 | 23 | 207_227 | 425 | 1340.0 | Transmembrane | Helical |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000361209 | - | 4 | 22 | 207_227 | 374 | 1289.0 | Transmembrane | Helical |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000373996 | - | 5 | 23 | 207_227 | 425 | 1336.0 | Transmembrane | Helical |
Tgene | TMEM38B | chr9:119858323 | chr9:108467878 | ENST00000374692 | 0 | 6 | 100_104 | 37 | 292.0 | Topological domain | Cytoplasmic | |
Tgene | TMEM38B | chr9:119858323 | chr9:108467878 | ENST00000374692 | 0 | 6 | 122_139 | 37 | 292.0 | Topological domain | Lumenal | |
Tgene | TMEM38B | chr9:119858323 | chr9:108467878 | ENST00000374692 | 0 | 6 | 157_179 | 37 | 292.0 | Topological domain | Cytoplasmic | |
Tgene | TMEM38B | chr9:119858323 | chr9:108467878 | ENST00000374692 | 0 | 6 | 196_207 | 37 | 292.0 | Topological domain | Lumenal | |
Tgene | TMEM38B | chr9:119858323 | chr9:108467878 | ENST00000374692 | 0 | 6 | 228_291 | 37 | 292.0 | Topological domain | Cytoplasmic | |
Tgene | TMEM38B | chr9:119858323 | chr9:108467878 | ENST00000374692 | 0 | 6 | 71_82 | 37 | 292.0 | Topological domain | Lumenal | |
Tgene | TMEM38B | chr9:119858323 | chr9:108467878 | ENST00000374692 | 0 | 6 | 105_121 | 37 | 292.0 | Transmembrane | Helical%3BName%3D4 | |
Tgene | TMEM38B | chr9:119858323 | chr9:108467878 | ENST00000374692 | 0 | 6 | 140_156 | 37 | 292.0 | Transmembrane | Helical%3BName%3D5 | |
Tgene | TMEM38B | chr9:119858323 | chr9:108467878 | ENST00000374692 | 0 | 6 | 180_195 | 37 | 292.0 | Transmembrane | Helical%3BName%3D6 | |
Tgene | TMEM38B | chr9:119858323 | chr9:108467878 | ENST00000374692 | 0 | 6 | 208_227 | 37 | 292.0 | Transmembrane | Helical%3BName%3D7 | |
Tgene | TMEM38B | chr9:119858323 | chr9:108467878 | ENST00000374692 | 0 | 6 | 51_70 | 37 | 292.0 | Transmembrane | Helical%3BName%3D2 | |
Tgene | TMEM38B | chr9:119858323 | chr9:108467878 | ENST00000374692 | 0 | 6 | 83_99 | 37 | 292.0 | Transmembrane | Helical%3BName%3D3 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000288520 | - | 1 | 8 | 1065_1188 | 0 | 441.0 | Domain | Note=Fibronectin type-III |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000288520 | - | 1 | 8 | 510_550 | 0 | 441.0 | Domain | Note=EGF-like 1 |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000288520 | - | 1 | 8 | 651_695 | 0 | 441.0 | Domain | Note=EGF-like 2 |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000288520 | - | 1 | 8 | 699_751 | 0 | 441.0 | Domain | Note=EGF-like 3 |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000313400 | - | 5 | 23 | 1065_1188 | 425 | 1340.0 | Domain | Note=Fibronectin type-III |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000313400 | - | 5 | 23 | 510_550 | 425 | 1340.0 | Domain | Note=EGF-like 1 |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000313400 | - | 5 | 23 | 651_695 | 425 | 1340.0 | Domain | Note=EGF-like 2 |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000313400 | - | 5 | 23 | 699_751 | 425 | 1340.0 | Domain | Note=EGF-like 3 |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000341734 | - | 1 | 9 | 1065_1188 | 0 | 396.0 | Domain | Note=Fibronectin type-III |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000341734 | - | 1 | 9 | 510_550 | 0 | 396.0 | Domain | Note=EGF-like 1 |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000341734 | - | 1 | 9 | 651_695 | 0 | 396.0 | Domain | Note=EGF-like 2 |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000341734 | - | 1 | 9 | 699_751 | 0 | 396.0 | Domain | Note=EGF-like 3 |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000361209 | - | 4 | 22 | 1065_1188 | 374 | 1289.0 | Domain | Note=Fibronectin type-III |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000361209 | - | 4 | 22 | 510_550 | 374 | 1289.0 | Domain | Note=EGF-like 1 |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000361209 | - | 4 | 22 | 651_695 | 374 | 1289.0 | Domain | Note=EGF-like 2 |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000361209 | - | 4 | 22 | 699_751 | 374 | 1289.0 | Domain | Note=EGF-like 3 |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000361477 | - | 4 | 23 | 1065_1188 | 0 | 396.0 | Domain | Note=Fibronectin type-III |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000361477 | - | 4 | 23 | 510_550 | 0 | 396.0 | Domain | Note=EGF-like 1 |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000361477 | - | 4 | 23 | 651_695 | 0 | 396.0 | Domain | Note=EGF-like 2 |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000361477 | - | 4 | 23 | 699_751 | 0 | 396.0 | Domain | Note=EGF-like 3 |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000373996 | - | 5 | 23 | 1065_1188 | 425 | 1336.0 | Domain | Note=Fibronectin type-III |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000373996 | - | 5 | 23 | 510_550 | 425 | 1336.0 | Domain | Note=EGF-like 1 |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000373996 | - | 5 | 23 | 651_695 | 425 | 1336.0 | Domain | Note=EGF-like 2 |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000373996 | - | 5 | 23 | 699_751 | 425 | 1336.0 | Domain | Note=EGF-like 3 |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000288520 | - | 1 | 8 | 228_434 | 0 | 441.0 | Topological domain | Cytoplasmic |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000288520 | - | 1 | 8 | 456_1339 | 0 | 441.0 | Topological domain | Lumenal |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000288520 | - | 1 | 8 | 50_206 | 0 | 441.0 | Topological domain | Lumenal |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000313400 | - | 5 | 23 | 228_434 | 425 | 1340.0 | Topological domain | Cytoplasmic |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000313400 | - | 5 | 23 | 456_1339 | 425 | 1340.0 | Topological domain | Lumenal |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000341734 | - | 1 | 9 | 228_434 | 0 | 396.0 | Topological domain | Cytoplasmic |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000341734 | - | 1 | 9 | 456_1339 | 0 | 396.0 | Topological domain | Lumenal |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000341734 | - | 1 | 9 | 50_206 | 0 | 396.0 | Topological domain | Lumenal |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000361209 | - | 4 | 22 | 228_434 | 374 | 1289.0 | Topological domain | Cytoplasmic |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000361209 | - | 4 | 22 | 456_1339 | 374 | 1289.0 | Topological domain | Lumenal |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000361477 | - | 4 | 23 | 228_434 | 0 | 396.0 | Topological domain | Cytoplasmic |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000361477 | - | 4 | 23 | 456_1339 | 0 | 396.0 | Topological domain | Lumenal |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000361477 | - | 4 | 23 | 50_206 | 0 | 396.0 | Topological domain | Lumenal |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000373996 | - | 5 | 23 | 228_434 | 425 | 1336.0 | Topological domain | Cytoplasmic |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000373996 | - | 5 | 23 | 456_1339 | 425 | 1336.0 | Topological domain | Lumenal |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000288520 | - | 1 | 8 | 207_227 | 0 | 441.0 | Transmembrane | Helical |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000288520 | - | 1 | 8 | 435_455 | 0 | 441.0 | Transmembrane | Helical |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000313400 | - | 5 | 23 | 435_455 | 425 | 1340.0 | Transmembrane | Helical |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000341734 | - | 1 | 9 | 207_227 | 0 | 396.0 | Transmembrane | Helical |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000341734 | - | 1 | 9 | 435_455 | 0 | 396.0 | Transmembrane | Helical |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000361209 | - | 4 | 22 | 435_455 | 374 | 1289.0 | Transmembrane | Helical |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000361477 | - | 4 | 23 | 207_227 | 0 | 396.0 | Transmembrane | Helical |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000361477 | - | 4 | 23 | 435_455 | 0 | 396.0 | Transmembrane | Helical |
Hgene | ASTN2 | chr9:119858323 | chr9:108467878 | ENST00000373996 | - | 5 | 23 | 435_455 | 425 | 1336.0 | Transmembrane | Helical |
Tgene | TMEM38B | chr9:119858323 | chr9:108467878 | ENST00000374692 | 0 | 6 | 1_19 | 37 | 292.0 | Topological domain | Lumenal | |
Tgene | TMEM38B | chr9:119858323 | chr9:108467878 | ENST00000374692 | 0 | 6 | 34_50 | 37 | 292.0 | Topological domain | Cytoplasmic | |
Tgene | TMEM38B | chr9:119858323 | chr9:108467878 | ENST00000374692 | 0 | 6 | 20_33 | 37 | 292.0 | Transmembrane | Helical%3BName%3D1 |
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Fusion Gene Sequence for ASTN2-TMEM38B |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>7279_7279_1_ASTN2-TMEM38B_ASTN2_chr9_119858323_ENST00000313400_TMEM38B_chr9_108467878_ENST00000374692_length(transcript)=4673nt_BP=1377nt GGTTCGCTTCGGCGTCCGCCGTCTCCGCAGCTGCCTCCTCTTCCTCCTTCGCCACCGCCGCCACCGCCGCCGCCGCCCGCAGCACCGCAG CCCCTCCCGCCATGGCCGCCGCCGGCGCCCGGCTCAGCCCCGGCCCCGGCTCGGGGCTCCGGGGGCGGCCGAGGCTCTGCTTCCACCCGG GGCCGCCGCCACTGCTGCCGCTGCTGCTGCTGTTCCTGCTCCTGCTGCCGCCGCCGCCGCTGCTGGCCGGCGCCACCGCCGCTGCCTCGC GGGAGCCCGACAGCCCGTGCCGGCTGAAGACCGTCACGGTGTCCACACTGCCCGCCCTGCGGGAGAGCGACATCGGCTGGAGCGGCGCCC GCGCCGGGGCCGGGGCTGGGACCGGGGCCGGAGCCGCCGCCGCCGCCGCGTCCCCGGGCTCTCCTGGCTCTGCCGGCACCGCCGCCGAGT CGCGCCTCCTGCTCTTTGTGCGTAACGAGCTGCCGGGGCGCATCGCGGTGCAGGACGACCTGGACAACACCGAGCTGCCCTTCTTCACCC TGGAGATGTCTGGCACAGCAGCGGACATCTCGCTGGTGCACTGGAGACAGCAGTGGCTGGAGAATGGCACCTTGTACTTCCACGTCTCCA TGAGCAGCTCCGGGCAGCTGGCCCAAGCCACCGCCCCCACTCTCCAGGAGCCCTCGGAGATTGTTGAGGAGCAGATGCACATCCTCCACA TTTCTGTGATGGGTGGCCTCATCGCGCTGCTGCTGCTGCTGCTGGTGTTCACCGTGGCGCTGTACGCCCAGCGACGTTGGCAGAAGCGTC GCCGCATCCCCCAGAAGAGCGCAAGCACAGAAGCCACTCATGAGATCCACTACATCCCATCTGTGCTGCTGGGTCCCCAGGCGCGGGAGA GCTTCCGTTCATCCCGGCTGCAAACCCACAATTCCGTCATTGGCGTGCCCATCCGGGAGACTCCCATCCTGGATGACTATGACTGTGAGG AGGATGAGGAGCCACCTAGGCGGGCCAACCATGTCTCCCGCGAGGACGAGTTTGGCAGCCAGGTGACCCACACTCTGGACAGTCTGGGAC ATCCAGGGGAAGAGAAGGTGGACTTTGAGAAGAAAGCAGCAGCTGAGGCGACTCAGGAGACAGTGGAGTCCCTGATGCAGAAGTTCAAGG AGAGTTTCCGCGCTAACACGCCCATCGAGATCGGTCAGCTGCAACCACCCCTGCGCAGCACATCGGCAGGGAAGAGGAAGCGGAGGAGCA AGTCTCGAGGAGGAATCAGCTTTGGGAGAGCCAAGGGGACGTCGGGCTCAGAGGCAGACGATGAAACTCAGCTGACATTCTACACGGAGC AGTACCGCAGTCGCCGCCGCAGCAAAGGAGCAGCTGCATTGGCATGGAAGAATCCTATTTCAAGCTGGTTTACTGCTATGCTCCACTGTT TTGGTGGAGGAATTTTATCCTGTCTACTGCTTGCAGAGCCTCCATTGAAGTTTCTTGCAAACCACACTAACATATTACTGGCATCTTCAA TCTGGTATATTACATTTTTTTGCCCGCATGACCTAGTTTCCCAGGGCTATTCATATCTACCTGTTCAACTACTGGCTTCGGGAATGAAGG AAGTGACCAGAACTTGGAAAATAGTAGGTGGAGTCACACATGCTAATAGCTATTACAAAAATGGCTGGATAGTCATGATAGCTATTGGAT GGGCCCGAGGTGCAGGTGGTACCATTATAACGAATTTTGAGAGGTTGGTAAAAGGAGATTGGAAACCAGAAGGTGATGAATGGCTGAAGA TGTCATACCCTGCCAAGGTAACCCTGCTGGGGTCAGTTATCTTCACATTCCAGCACACCCAGCATCTGGCAATATCAAAGCATAATCTTA TGTTCCTTTATACCATCTTTATTGTGGCCACAAAGATAACCATGATGACTACACAGACTTCTACTATGACATTTGCTCCTTTTGAGGATA CATTGAGTTGGATGCTATTTGGCTGGCAGCAGCCGTTTTCATCATGTGAGAAGAAAAGTGAAGCAAAGTCACCTTCCAATGGCGTTGGGT CATTGGCCTCAAAGCCGGTAGATGTTGCCTCAGATAATGTTAAAAAGAAACATACTAAGAAGAATGAATAAATTTACGTGATGAGCTCTA CAAGGCCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTTTCTATGTATGTGATGTGAAATGAAGACTATATATATGGAA TGGAGGTGACAGAAAGAAAGAAATTCTTTGTTTGAGGGAGACTTCCCCTTTCTGGATTGTATTTGTAGAGTGTTACGAGTGTATCATGTG ATTATGCTTTACCGGTATAAGAGATTCTGTTGTGATTATTTGAATAGTTTTATATTAATAAAAGAAGACAAAATTTTTTAAATGTTAGAA AAAGCAGATCTGTCATTGCAAAGTAACAAAAATTTTAAGCTTTTAAAAATGTAGATTTTTCATATTTTTAAAATTTGAATCTATTTGAGC TTTAGTTCAGCAGAATTAAATTTTTACTTGACATTATCATTAAAATTGCTAGGTATGGAGAACAATTCCTATTTTATTTTGAACACTGAG AAGAGTAAACTTTTCCTAAAACACTTTATATTATAAATGAAAATAAATTGCTAGTTTATATTTTAGATATAAACATCATATTTTTTATTA ATACCTACATCAAATGGAAAATATCTGAAATTTTTTTTCCATAGCAGGTATTTTCTACTAGAAGTAGTTTTACTACTTTTCATTTAGAAC AGAGTATGAGTCTTAATCTGAAGTCTTTTTCATGCCCTTGTTTTAAAAAAACTACTTTTTTTGGCCTCAAAAAAATCAAGGGTGTAATTT TTAATAAATTGTTAATCCTATGTTTTGTAATTTTCATTTTAGGAGCTTGACTTATTTTTTTCTCTCTCATAAAAACACATTTGTTTTAAT TGTAGGAGAAATTTTCTCAGCATTTTGCATGTTCTTTCTAATCTTTGTTGGTCTGAATATATTGGTAGTAATTACTGTAATTATTCAACA AAAAGCATATCCGTTCAAAAATTTTTCCACTATGTCTTTTTTCTAGTGGCTACTGTTTTAGTTTTCTAGTTGAATATCTCTGACAAGCTT TCGTATGGTTTTGTTATATTTTCATCTACATGTAATGTGTTATTAATTTTATTAAATGAAAACTAATCACCTTCATGTGGAAATGCTCTG AGAATTGTCCTTAGGCATTTGGTAGTAACCAGCTAACCAAGAAGAAACAGAGAAACCAGAACTTCATATGGCAGTCCATTTAGATGAAGA ATGATGATATAAAATCTGGTTCCTTCTTAGCAAAATAAAAAACAAACAAGAAAAGATACTAAATGATGTTAATTTTCTTACTTTATGATT TAGAAGTCCAGTTATAATATTAAAACTCTGTGACATAGTTTCTTTTACCAAAACCATGAACCTACTCCCCGTATCAGGTATTTTCGATGG TTTAGAAGTACTCAAGTCACATCACATTCAAGTTAGAAGTTTTTTTTTTGTTGTTGTTATTTTAAATTTTTAACAAATATAAACACCAGC AGATACTATTACTTGCTTAAAAAATTGGGAGGGGGCACTTTTCATAGTCTTGGAATGCTAAGAAGTTTTATTTTTAATATTGTGACAGAA AGCTTTAAGTATTTAAGAGCTCTGTATTATATTTGATACTCTTACAGTTAAAAACTTTTCAAAATTAATACATTGTTAATTATTGACCAG TTTTGAAGTTTGGGTTTAACTGTAGTTGAAATGGAAGGACTCTTGTTTTACACTTGTATTAAAGATAAATTTATTAAAATAAGTTATTTA GCACCAATGGAGTATTACATTATTTTTATGTTTTATATTTTTCTTGAGGTAGAGTTTCAGAACTCATCTAGTATTTTGACTAATATAGTA TATATTCAGTGATTACTGTTCAAATGGGACATTGGTAGAAACTTTATTAATCTATGCAAGTATCCTATAACCCTCAATTCAAGGCTCTTT TGTAAAAAATGTACTGGAGAACATGGCTTAGGCCTGAAACCCATCCTGAATCTATTCAGGTCACCTGTAGAGTCTTGACTTGGATTTGCA AAGCAGATTGTTAGACTCCTTACCCAATGTGAAGTGTGAATAAGGCCTATAGGCCTGCCTCACACAGCTAATCAGAGGTGGCACTGAGAA AGTCAAGTCCTAATAGGTCTCCTTAAAAAAAAAAAGGAGACAAAAAGCTGGCAAGAACATGAGCCAGCTTCCCTCAGTGCTGTCACTCTC AAGTAAAACATGGCCAAATGAATATCAAACTGGTTTATCAGATTAGTCACTCTTCCTTACTGAGGGAGTATCAAGTAAGGGCTGGAGAGA GACCAGATATGTGGAGTTGTTGGCTTTCAGTGGAAATGGTAGCCTCCCTGTGGGTAGAGACCAAAAGGTAGAGAGATGACAGAAGGGAGA CTCTGATTAGTGTATTTTTTTTTTGTCTATTCCTTAAAGCCCAGACACCTTTCCATTAAAATCTACTTCAAATCACAAGTTGATTACAAT >7279_7279_1_ASTN2-TMEM38B_ASTN2_chr9_119858323_ENST00000313400_TMEM38B_chr9_108467878_ENST00000374692_length(amino acids)=679AA_BP=425 MAAAGARLSPGPGSGLRGRPRLCFHPGPPPLLPLLLLFLLLLPPPPLLAGATAAASREPDSPCRLKTVTVSTLPALRESDIGWSGARAGA GAGTGAGAAAAAASPGSPGSAGTAAESRLLLFVRNELPGRIAVQDDLDNTELPFFTLEMSGTAADISLVHWRQQWLENGTLYFHVSMSSS GQLAQATAPTLQEPSEIVEEQMHILHISVMGGLIALLLLLLVFTVALYAQRRWQKRRRIPQKSASTEATHEIHYIPSVLLGPQARESFRS SRLQTHNSVIGVPIRETPILDDYDCEEDEEPPRRANHVSREDEFGSQVTHTLDSLGHPGEEKVDFEKKAAAEATQETVESLMQKFKESFR ANTPIEIGQLQPPLRSTSAGKRKRRSKSRGGISFGRAKGTSGSEADDETQLTFYTEQYRSRRRSKGAAALAWKNPISSWFTAMLHCFGGG ILSCLLLAEPPLKFLANHTNILLASSIWYITFFCPHDLVSQGYSYLPVQLLASGMKEVTRTWKIVGGVTHANSYYKNGWIVMIAIGWARG AGGTIITNFERLVKGDWKPEGDEWLKMSYPAKVTLLGSVIFTFQHTQHLAISKHNLMFLYTIFIVATKITMMTTQTSTMTFAPFEDTLSW -------------------------------------------------------------- >7279_7279_2_ASTN2-TMEM38B_ASTN2_chr9_119858323_ENST00000361209_TMEM38B_chr9_108467878_ENST00000374692_length(transcript)=4551nt_BP=1255nt GGCTCTCTCCGCTCCTTAGCTCGGGCGTCCTGGTTCGCTTCGGCGTCCGCCGTCTCCGCAGCTGCCTCCTCTTCCTCCTTCGCCACCGCC GCCACCGCCGCCGCCGCCCGCAGCACCGCAGCCCCTCCCGCCATGGCCGCCGCCGGCGCCCGGCTCAGCCCCGGCCCCGGCTCGGGGCTC CGGGGGCGGCCGAGGCTCTGCTTCCACCCGGGGCCGCCGCCACTGCTGCCGCTGCTGCTGCTGTTCCTGCTCCTGCTGCCGCCGCCGCCG CTGCTGGCCGGCGCCACCGCCGCTGCCTCGCGGGAGCCCGACAGCCCGTGCCGGCTGAAGACCGTCACGGTGTCCACACTGCCCGCCCTG CGGGAGAGCGACATCGGCTGGAGCGGCGCCCGCGCCGGGGCCGGGGCTGGGACCGGGGCCGGAGCCGCCGCCGCCGCCGCGTCCCCGGGC TCTCCTGGCTCTGCCGGCACCGCCGCCGAGTCGCGCCTCCTGCTCTTTGTGCGTAACGAGCTGCCGGGGCGCATCGCGGTGCAGGACGAC CTGGACAACACCGAGCTGCCCTTCTTCACCCTGGAGATGTCTGGCACAGCAGCGGACATCTCGCTGGTGCACTGGAGACAGCAGTGGCTG GAGAATGGCACCTTGTACTTCCACGTCTCCATGAGCAGCTCCGGGCAGCTGGCCCAAGCCACCGCCCCCACTCTCCAGGAGCCCTCGGAG ATTGTTGAGGAGCAGATGCACATCCTCCACATTTCTGTGATGGGTGGCCTCATCGCGCTGCTGCTGCTGCTGCTGGTGTTCACCGTGGCG CTGTACGCCCAGCGACGTTGGCAGAAGCGTCGCCGCATCCCCCAGAAGAGCGCAAGCACAGAAGCCACTCATGAGATCCACTACATCCCA TCTGTGCTGCTGGGTCCCCAGGCGCGGGAGAGCTTCCGTTCATCCCGGCTGCAAACCCACAATTCCGTCATTGGCGTGCCCATCCGGGAG ACTCCCATCCTGGATGACTATGACTGTGAGGAGGATGAGGAGCCACCTAGGCGGGCCAACCATGTCTCCCGCGAGGACGAGTTTGGCAGC CAGGTGACCCACACTCTGGACAGTCTGGGACATCCAGGGGAAGAGAAGGTGGACTTTGAGAAGAAAGGAGGAATCAGCTTTGGGAGAGCC AAGGGGACGTCGGGCTCAGAGGCAGACGATGAAACTCAGCTGACATTCTACACGGAGCAGTACCGCAGTCGCCGCCGCAGCAAAGGAGCA GCTGCATTGGCATGGAAGAATCCTATTTCAAGCTGGTTTACTGCTATGCTCCACTGTTTTGGTGGAGGAATTTTATCCTGTCTACTGCTT GCAGAGCCTCCATTGAAGTTTCTTGCAAACCACACTAACATATTACTGGCATCTTCAATCTGGTATATTACATTTTTTTGCCCGCATGAC CTAGTTTCCCAGGGCTATTCATATCTACCTGTTCAACTACTGGCTTCGGGAATGAAGGAAGTGACCAGAACTTGGAAAATAGTAGGTGGA GTCACACATGCTAATAGCTATTACAAAAATGGCTGGATAGTCATGATAGCTATTGGATGGGCCCGAGGTGCAGGTGGTACCATTATAACG AATTTTGAGAGGTTGGTAAAAGGAGATTGGAAACCAGAAGGTGATGAATGGCTGAAGATGTCATACCCTGCCAAGGTAACCCTGCTGGGG TCAGTTATCTTCACATTCCAGCACACCCAGCATCTGGCAATATCAAAGCATAATCTTATGTTCCTTTATACCATCTTTATTGTGGCCACA AAGATAACCATGATGACTACACAGACTTCTACTATGACATTTGCTCCTTTTGAGGATACATTGAGTTGGATGCTATTTGGCTGGCAGCAG CCGTTTTCATCATGTGAGAAGAAAAGTGAAGCAAAGTCACCTTCCAATGGCGTTGGGTCATTGGCCTCAAAGCCGGTAGATGTTGCCTCA GATAATGTTAAAAAGAAACATACTAAGAAGAATGAATAAATTTACGTGATGAGCTCTACAAGGCCAAAAATTTTTTTTCTTATCTACCTG TTATATTGTGCTAATTTTTCTATGTATGTGATGTGAAATGAAGACTATATATATGGAATGGAGGTGACAGAAAGAAAGAAATTCTTTGTT TGAGGGAGACTTCCCCTTTCTGGATTGTATTTGTAGAGTGTTACGAGTGTATCATGTGATTATGCTTTACCGGTATAAGAGATTCTGTTG TGATTATTTGAATAGTTTTATATTAATAAAAGAAGACAAAATTTTTTAAATGTTAGAAAAAGCAGATCTGTCATTGCAAAGTAACAAAAA TTTTAAGCTTTTAAAAATGTAGATTTTTCATATTTTTAAAATTTGAATCTATTTGAGCTTTAGTTCAGCAGAATTAAATTTTTACTTGAC ATTATCATTAAAATTGCTAGGTATGGAGAACAATTCCTATTTTATTTTGAACACTGAGAAGAGTAAACTTTTCCTAAAACACTTTATATT ATAAATGAAAATAAATTGCTAGTTTATATTTTAGATATAAACATCATATTTTTTATTAATACCTACATCAAATGGAAAATATCTGAAATT TTTTTTCCATAGCAGGTATTTTCTACTAGAAGTAGTTTTACTACTTTTCATTTAGAACAGAGTATGAGTCTTAATCTGAAGTCTTTTTCA TGCCCTTGTTTTAAAAAAACTACTTTTTTTGGCCTCAAAAAAATCAAGGGTGTAATTTTTAATAAATTGTTAATCCTATGTTTTGTAATT TTCATTTTAGGAGCTTGACTTATTTTTTTCTCTCTCATAAAAACACATTTGTTTTAATTGTAGGAGAAATTTTCTCAGCATTTTGCATGT TCTTTCTAATCTTTGTTGGTCTGAATATATTGGTAGTAATTACTGTAATTATTCAACAAAAAGCATATCCGTTCAAAAATTTTTCCACTA TGTCTTTTTTCTAGTGGCTACTGTTTTAGTTTTCTAGTTGAATATCTCTGACAAGCTTTCGTATGGTTTTGTTATATTTTCATCTACATG TAATGTGTTATTAATTTTATTAAATGAAAACTAATCACCTTCATGTGGAAATGCTCTGAGAATTGTCCTTAGGCATTTGGTAGTAACCAG CTAACCAAGAAGAAACAGAGAAACCAGAACTTCATATGGCAGTCCATTTAGATGAAGAATGATGATATAAAATCTGGTTCCTTCTTAGCA AAATAAAAAACAAACAAGAAAAGATACTAAATGATGTTAATTTTCTTACTTTATGATTTAGAAGTCCAGTTATAATATTAAAACTCTGTG ACATAGTTTCTTTTACCAAAACCATGAACCTACTCCCCGTATCAGGTATTTTCGATGGTTTAGAAGTACTCAAGTCACATCACATTCAAG TTAGAAGTTTTTTTTTTGTTGTTGTTATTTTAAATTTTTAACAAATATAAACACCAGCAGATACTATTACTTGCTTAAAAAATTGGGAGG GGGCACTTTTCATAGTCTTGGAATGCTAAGAAGTTTTATTTTTAATATTGTGACAGAAAGCTTTAAGTATTTAAGAGCTCTGTATTATAT TTGATACTCTTACAGTTAAAAACTTTTCAAAATTAATACATTGTTAATTATTGACCAGTTTTGAAGTTTGGGTTTAACTGTAGTTGAAAT GGAAGGACTCTTGTTTTACACTTGTATTAAAGATAAATTTATTAAAATAAGTTATTTAGCACCAATGGAGTATTACATTATTTTTATGTT TTATATTTTTCTTGAGGTAGAGTTTCAGAACTCATCTAGTATTTTGACTAATATAGTATATATTCAGTGATTACTGTTCAAATGGGACAT TGGTAGAAACTTTATTAATCTATGCAAGTATCCTATAACCCTCAATTCAAGGCTCTTTTGTAAAAAATGTACTGGAGAACATGGCTTAGG CCTGAAACCCATCCTGAATCTATTCAGGTCACCTGTAGAGTCTTGACTTGGATTTGCAAAGCAGATTGTTAGACTCCTTACCCAATGTGA AGTGTGAATAAGGCCTATAGGCCTGCCTCACACAGCTAATCAGAGGTGGCACTGAGAAAGTCAAGTCCTAATAGGTCTCCTTAAAAAAAA AAAGGAGACAAAAAGCTGGCAAGAACATGAGCCAGCTTCCCTCAGTGCTGTCACTCTCAAGTAAAACATGGCCAAATGAATATCAAACTG GTTTATCAGATTAGTCACTCTTCCTTACTGAGGGAGTATCAAGTAAGGGCTGGAGAGAGACCAGATATGTGGAGTTGTTGGCTTTCAGTG GAAATGGTAGCCTCCCTGTGGGTAGAGACCAAAAGGTAGAGAGATGACAGAAGGGAGACTCTGATTAGTGTATTTTTTTTTTGTCTATTC CTTAAAGCCCAGACACCTTTCCATTAAAATCTACTTCAAATCACAAGTTGATTACAATTGAGTGGAACATCCCATGTTGTAAATGGAATA >7279_7279_2_ASTN2-TMEM38B_ASTN2_chr9_119858323_ENST00000361209_TMEM38B_chr9_108467878_ENST00000374692_length(amino acids)=628AA_BP=374 MAAAGARLSPGPGSGLRGRPRLCFHPGPPPLLPLLLLFLLLLPPPPLLAGATAAASREPDSPCRLKTVTVSTLPALRESDIGWSGARAGA GAGTGAGAAAAAASPGSPGSAGTAAESRLLLFVRNELPGRIAVQDDLDNTELPFFTLEMSGTAADISLVHWRQQWLENGTLYFHVSMSSS GQLAQATAPTLQEPSEIVEEQMHILHISVMGGLIALLLLLLVFTVALYAQRRWQKRRRIPQKSASTEATHEIHYIPSVLLGPQARESFRS SRLQTHNSVIGVPIRETPILDDYDCEEDEEPPRRANHVSREDEFGSQVTHTLDSLGHPGEEKVDFEKKGGISFGRAKGTSGSEADDETQL TFYTEQYRSRRRSKGAAALAWKNPISSWFTAMLHCFGGGILSCLLLAEPPLKFLANHTNILLASSIWYITFFCPHDLVSQGYSYLPVQLL ASGMKEVTRTWKIVGGVTHANSYYKNGWIVMIAIGWARGAGGTIITNFERLVKGDWKPEGDEWLKMSYPAKVTLLGSVIFTFQHTQHLAI -------------------------------------------------------------- >7279_7279_3_ASTN2-TMEM38B_ASTN2_chr9_119858323_ENST00000373996_TMEM38B_chr9_108467878_ENST00000374692_length(transcript)=4572nt_BP=1276nt ATGGCCGCCGCCGGCGCCCGGCTCAGCCCCGGCCCCGGCTCGGGGCTCCGGGGGCGGCCGAGGCTCTGCTTCCACCCGGGGCCGCCGCCA CTGCTGCCGCTGCTGCTGCTGTTCCTGCTCCTGCTGCCGCCGCCGCCGCTGCTGGCCGGCGCCACCGCCGCTGCCTCGCGGGAGCCCGAC AGCCCGTGCCGGCTGAAGACCGTCACGGTGTCCACACTGCCCGCCCTGCGGGAGAGCGACATCGGCTGGAGCGGCGCCCGCGCCGGGGCC GGGGCTGGGACCGGGGCCGGAGCCGCCGCCGCCGCCGCGTCCCCGGGCTCTCCTGGCTCTGCCGGCACCGCCGCCGAGTCGCGCCTCCTG CTCTTTGTGCGTAACGAGCTGCCGGGGCGCATCGCGGTGCAGGACGACCTGGACAACACCGAGCTGCCCTTCTTCACCCTGGAGATGTCT GGCACAGCAGCGGACATCTCGCTGGTGCACTGGAGACAGCAGTGGCTGGAGAATGGCACCTTGTACTTCCACGTCTCCATGAGCAGCTCC GGGCAGCTGGCCCAAGCCACCGCCCCCACTCTCCAGGAGCCCTCGGAGATTGTTGAGGAGCAGATGCACATCCTCCACATTTCTGTGATG GGTGGCCTCATCGCGCTGCTGCTGCTGCTGCTGGTGTTCACCGTGGCGCTGTACGCCCAGCGACGTTGGCAGAAGCGTCGCCGCATCCCC CAGAAGAGCGCAAGCACAGAAGCCACTCATGAGATCCACTACATCCCATCTGTGCTGCTGGGTCCCCAGGCGCGGGAGAGCTTCCGTTCA TCCCGGCTGCAAACCCACAATTCCGTCATTGGCGTGCCCATCCGGGAGACTCCCATCCTGGATGACTATGACTGTGAGGAGGATGAGGAG CCACCTAGGCGGGCCAACCATGTCTCCCGCGAGGACGAGTTTGGCAGCCAGGTGACCCACACTCTGGACAGTCTGGGACATCCAGGGGAA GAGAAGGTGGACTTTGAGAAGAAAGCAGCAGCTGAGGCGACTCAGGAGACAGTGGAGTCCCTGATGCAGAAGTTCAAGGAGAGTTTCCGC GCTAACACGCCCATCGAGATCGGTCAGCTGCAACCACCCCTGCGCAGCACATCGGCAGGGAAGAGGAAGCGGAGGAGCAAGTCTCGAGGA GGAATCAGCTTTGGGAGAGCCAAGGGGACGTCGGGCTCAGAGGCAGACGATGAAACTCAGCTGACATTCTACACGGAGCAGTACCGCAGT CGCCGCCGCAGCAAAGGAGCAGCTGCATTGGCATGGAAGAATCCTATTTCAAGCTGGTTTACTGCTATGCTCCACTGTTTTGGTGGAGGA ATTTTATCCTGTCTACTGCTTGCAGAGCCTCCATTGAAGTTTCTTGCAAACCACACTAACATATTACTGGCATCTTCAATCTGGTATATT ACATTTTTTTGCCCGCATGACCTAGTTTCCCAGGGCTATTCATATCTACCTGTTCAACTACTGGCTTCGGGAATGAAGGAAGTGACCAGA ACTTGGAAAATAGTAGGTGGAGTCACACATGCTAATAGCTATTACAAAAATGGCTGGATAGTCATGATAGCTATTGGATGGGCCCGAGGT GCAGGTGGTACCATTATAACGAATTTTGAGAGGTTGGTAAAAGGAGATTGGAAACCAGAAGGTGATGAATGGCTGAAGATGTCATACCCT GCCAAGGTAACCCTGCTGGGGTCAGTTATCTTCACATTCCAGCACACCCAGCATCTGGCAATATCAAAGCATAATCTTATGTTCCTTTAT ACCATCTTTATTGTGGCCACAAAGATAACCATGATGACTACACAGACTTCTACTATGACATTTGCTCCTTTTGAGGATACATTGAGTTGG ATGCTATTTGGCTGGCAGCAGCCGTTTTCATCATGTGAGAAGAAAAGTGAAGCAAAGTCACCTTCCAATGGCGTTGGGTCATTGGCCTCA AAGCCGGTAGATGTTGCCTCAGATAATGTTAAAAAGAAACATACTAAGAAGAATGAATAAATTTACGTGATGAGCTCTACAAGGCCAAAA ATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTTTCTATGTATGTGATGTGAAATGAAGACTATATATATGGAATGGAGGTGACA GAAAGAAAGAAATTCTTTGTTTGAGGGAGACTTCCCCTTTCTGGATTGTATTTGTAGAGTGTTACGAGTGTATCATGTGATTATGCTTTA CCGGTATAAGAGATTCTGTTGTGATTATTTGAATAGTTTTATATTAATAAAAGAAGACAAAATTTTTTAAATGTTAGAAAAAGCAGATCT GTCATTGCAAAGTAACAAAAATTTTAAGCTTTTAAAAATGTAGATTTTTCATATTTTTAAAATTTGAATCTATTTGAGCTTTAGTTCAGC AGAATTAAATTTTTACTTGACATTATCATTAAAATTGCTAGGTATGGAGAACAATTCCTATTTTATTTTGAACACTGAGAAGAGTAAACT TTTCCTAAAACACTTTATATTATAAATGAAAATAAATTGCTAGTTTATATTTTAGATATAAACATCATATTTTTTATTAATACCTACATC AAATGGAAAATATCTGAAATTTTTTTTCCATAGCAGGTATTTTCTACTAGAAGTAGTTTTACTACTTTTCATTTAGAACAGAGTATGAGT CTTAATCTGAAGTCTTTTTCATGCCCTTGTTTTAAAAAAACTACTTTTTTTGGCCTCAAAAAAATCAAGGGTGTAATTTTTAATAAATTG TTAATCCTATGTTTTGTAATTTTCATTTTAGGAGCTTGACTTATTTTTTTCTCTCTCATAAAAACACATTTGTTTTAATTGTAGGAGAAA TTTTCTCAGCATTTTGCATGTTCTTTCTAATCTTTGTTGGTCTGAATATATTGGTAGTAATTACTGTAATTATTCAACAAAAAGCATATC CGTTCAAAAATTTTTCCACTATGTCTTTTTTCTAGTGGCTACTGTTTTAGTTTTCTAGTTGAATATCTCTGACAAGCTTTCGTATGGTTT TGTTATATTTTCATCTACATGTAATGTGTTATTAATTTTATTAAATGAAAACTAATCACCTTCATGTGGAAATGCTCTGAGAATTGTCCT TAGGCATTTGGTAGTAACCAGCTAACCAAGAAGAAACAGAGAAACCAGAACTTCATATGGCAGTCCATTTAGATGAAGAATGATGATATA AAATCTGGTTCCTTCTTAGCAAAATAAAAAACAAACAAGAAAAGATACTAAATGATGTTAATTTTCTTACTTTATGATTTAGAAGTCCAG TTATAATATTAAAACTCTGTGACATAGTTTCTTTTACCAAAACCATGAACCTACTCCCCGTATCAGGTATTTTCGATGGTTTAGAAGTAC TCAAGTCACATCACATTCAAGTTAGAAGTTTTTTTTTTGTTGTTGTTATTTTAAATTTTTAACAAATATAAACACCAGCAGATACTATTA CTTGCTTAAAAAATTGGGAGGGGGCACTTTTCATAGTCTTGGAATGCTAAGAAGTTTTATTTTTAATATTGTGACAGAAAGCTTTAAGTA TTTAAGAGCTCTGTATTATATTTGATACTCTTACAGTTAAAAACTTTTCAAAATTAATACATTGTTAATTATTGACCAGTTTTGAAGTTT GGGTTTAACTGTAGTTGAAATGGAAGGACTCTTGTTTTACACTTGTATTAAAGATAAATTTATTAAAATAAGTTATTTAGCACCAATGGA GTATTACATTATTTTTATGTTTTATATTTTTCTTGAGGTAGAGTTTCAGAACTCATCTAGTATTTTGACTAATATAGTATATATTCAGTG ATTACTGTTCAAATGGGACATTGGTAGAAACTTTATTAATCTATGCAAGTATCCTATAACCCTCAATTCAAGGCTCTTTTGTAAAAAATG TACTGGAGAACATGGCTTAGGCCTGAAACCCATCCTGAATCTATTCAGGTCACCTGTAGAGTCTTGACTTGGATTTGCAAAGCAGATTGT TAGACTCCTTACCCAATGTGAAGTGTGAATAAGGCCTATAGGCCTGCCTCACACAGCTAATCAGAGGTGGCACTGAGAAAGTCAAGTCCT AATAGGTCTCCTTAAAAAAAAAAAGGAGACAAAAAGCTGGCAAGAACATGAGCCAGCTTCCCTCAGTGCTGTCACTCTCAAGTAAAACAT GGCCAAATGAATATCAAACTGGTTTATCAGATTAGTCACTCTTCCTTACTGAGGGAGTATCAAGTAAGGGCTGGAGAGAGACCAGATATG TGGAGTTGTTGGCTTTCAGTGGAAATGGTAGCCTCCCTGTGGGTAGAGACCAAAAGGTAGAGAGATGACAGAAGGGAGACTCTGATTAGT GTATTTTTTTTTTGTCTATTCCTTAAAGCCCAGACACCTTTCCATTAAAATCTACTTCAAATCACAAGTTGATTACAATTGAGTGGAACA >7279_7279_3_ASTN2-TMEM38B_ASTN2_chr9_119858323_ENST00000373996_TMEM38B_chr9_108467878_ENST00000374692_length(amino acids)=679AA_BP=425 MAAAGARLSPGPGSGLRGRPRLCFHPGPPPLLPLLLLFLLLLPPPPLLAGATAAASREPDSPCRLKTVTVSTLPALRESDIGWSGARAGA GAGTGAGAAAAAASPGSPGSAGTAAESRLLLFVRNELPGRIAVQDDLDNTELPFFTLEMSGTAADISLVHWRQQWLENGTLYFHVSMSSS GQLAQATAPTLQEPSEIVEEQMHILHISVMGGLIALLLLLLVFTVALYAQRRWQKRRRIPQKSASTEATHEIHYIPSVLLGPQARESFRS SRLQTHNSVIGVPIRETPILDDYDCEEDEEPPRRANHVSREDEFGSQVTHTLDSLGHPGEEKVDFEKKAAAEATQETVESLMQKFKESFR ANTPIEIGQLQPPLRSTSAGKRKRRSKSRGGISFGRAKGTSGSEADDETQLTFYTEQYRSRRRSKGAAALAWKNPISSWFTAMLHCFGGG ILSCLLLAEPPLKFLANHTNILLASSIWYITFFCPHDLVSQGYSYLPVQLLASGMKEVTRTWKIVGGVTHANSYYKNGWIVMIAIGWARG AGGTIITNFERLVKGDWKPEGDEWLKMSYPAKVTLLGSVIFTFQHTQHLAISKHNLMFLYTIFIVATKITMMTTQTSTMTFAPFEDTLSW -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for ASTN2-TMEM38B |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for ASTN2-TMEM38B |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for ASTN2-TMEM38B |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | ASTN2 | C0036341 | Schizophrenia | 2 | PSYGENET |
Hgene | ASTN2 | C0004352 | Autistic Disorder | 1 | CTD_human |
Hgene | ASTN2 | C0005586 | Bipolar Disorder | 1 | PSYGENET |
Hgene | ASTN2 | C0029410 | Osteoarthritis of hip | 1 | CTD_human |
Hgene | ASTN2 | C0236733 | Amphetamine-Related Disorders | 1 | CTD_human |
Hgene | ASTN2 | C0236804 | Amphetamine Addiction | 1 | CTD_human |
Hgene | ASTN2 | C0236807 | Amphetamine Abuse | 1 | CTD_human |
Hgene | ASTN2 | C0338480 | Common Migraine | 1 | CTD_human |
Tgene | C0268363 | Osteogenesis imperfecta type IV (disorder) | 2 | ORPHANET | |
Tgene | C0019193 | Hepatitis, Toxic | 1 | CTD_human | |
Tgene | C0029434 | Osteogenesis Imperfecta | 1 | GENOMICS_ENGLAND | |
Tgene | C0860207 | Drug-Induced Liver Disease | 1 | CTD_human | |
Tgene | C1262760 | Hepatitis, Drug-Induced | 1 | CTD_human | |
Tgene | C3554428 | OSTEOGENESIS IMPERFECTA, TYPE XIV | 1 | CTD_human;GENOMICS_ENGLAND | |
Tgene | C3658290 | Drug-Induced Acute Liver Injury | 1 | CTD_human | |
Tgene | C4277682 | Chemical and Drug Induced Liver Injury | 1 | CTD_human | |
Tgene | C4279912 | Chemically-Induced Liver Toxicity | 1 | CTD_human |