![]() |
||||||
|
![]() | Fusion Gene Summary |
![]() | Fusion Gene ORF analysis |
![]() | Fusion Genomic Features |
![]() | Fusion Protein Features |
![]() | Fusion Gene Sequence |
![]() | Fusion Gene PPI analysis |
![]() | Related Drugs |
![]() | Related Diseases |
Fusion gene:ARHGEF18-HSCB (FusionGDB2 ID:HG23370TG150274) |
Fusion Gene Summary for ARHGEF18-HSCB |
![]() |
Fusion gene information | Fusion gene name: ARHGEF18-HSCB | Fusion gene ID: hg23370tg150274 | Hgene | Tgene | Gene symbol | ARHGEF18 | HSCB | Gene ID | 23370 | 150274 |
Gene name | Rho/Rac guanine nucleotide exchange factor 18 | HscB mitochondrial iron-sulfur cluster cochaperone | |
Synonyms | P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF | DNAJC20|HSC20|JAC1 | |
Cytomap | ('ARHGEF18')('HSCB') 19p13.2 | 22q12.1 | |
Type of gene | protein-coding | protein-coding | |
Description | rho guanine nucleotide exchange factor 18114 kDa Rho-specific guanine nucleotide exchange factorRho-specific guanine nucleotide exchange factor p114Rho/Rac guanine nucleotide exchange factor (GEF) 18septin-associated RhoGEF | iron-sulfur cluster co-chaperone protein HscBDnaJ (Hsp40) homolog, subfamily C, member 20HscB iron-sulfur cluster co-chaperone homologHscB mitochondrial iron-sulfur cluster co-chaperoneJ-type co-chaperone HSC20epididymis secretory sperm binding prote | |
Modification date | 20200320 | 20200320 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000319670, ENST00000359920, | ||
Fusion gene scores | * DoF score | 14 X 8 X 12=1344 | 12 X 9 X 8=864 |
# samples | 16 | 18 | |
** MAII score | log2(16/1344*10)=-3.0703893278914 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(18/864*10)=-2.26303440583379 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: ARHGEF18 [Title/Abstract] AND HSCB [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | ARHGEF18(7516152)-HSCB(29153064), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | ARHGEF18-HSCB seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. ARHGEF18-HSCB seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. ARHGEF18-HSCB seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. ARHGEF18-HSCB seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
![]() |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | ARHGEF18 | GO:0007264 | small GTPase mediated signal transduction | 14512443 |
Hgene | ARHGEF18 | GO:0008360 | regulation of cell shape | 14512443 |
Hgene | ARHGEF18 | GO:0030036 | actin cytoskeleton organization | 14512443 |
![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
![]() |
![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
![]() |
![]() * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Top |
Fusion Gene ORF analysis for ARHGEF18-HSCB |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
![]() |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
![]() |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000319670 | ENST00000216027 | ARHGEF18 | chr19 | 7516152 | + | HSCB | chr22 | 29153064 | + | 0.003084054 | 0.99691594 |
ENST00000359920 | ENST00000216027 | ARHGEF18 | chr19 | 7516152 | + | HSCB | chr22 | 29153064 | + | 0.004012618 | 0.99598736 |
Top |
Fusion Genomic Features for ARHGEF18-HSCB |
![]() |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
ARHGEF18 | chr19 | 7516152 | + | HSCB | chr22 | 29153065 | + | 5.31E-07 | 0.9999995 |
ARHGEF18 | chr19 | 7516152 | + | HSCB | chr22 | 29153065 | + | 5.31E-07 | 0.9999995 |
![]() |
![]() |
![]() |
![]() |
Top |
Fusion Protein Features for ARHGEF18-HSCB |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr19:7516152/chr22:29153064) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
![]() |
![]() |
Hgene | Tgene |
. | . |
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | ARHGEF18 | chr19:7516152 | chr22:29153064 | ENST00000359920 | + | 6 | 20 | 310_334 | 430 | 1556.0 | Zinc finger | C2H2-type%3B degenerate |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | ARHGEF18 | chr19:7516152 | chr22:29153064 | ENST00000319670 | + | 7 | 21 | 1038_1148 | 272 | 1618.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | ARHGEF18 | chr19:7516152 | chr22:29153064 | ENST00000359920 | + | 6 | 20 | 1038_1148 | 430 | 1556.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | ARHGEF18 | chr19:7516152 | chr22:29153064 | ENST00000319670 | + | 7 | 21 | 1042_1142 | 272 | 1618.0 | Compositional bias | Arg-rich |
Hgene | ARHGEF18 | chr19:7516152 | chr22:29153064 | ENST00000319670 | + | 7 | 21 | 1292_1346 | 272 | 1618.0 | Compositional bias | Pro-rich |
Hgene | ARHGEF18 | chr19:7516152 | chr22:29153064 | ENST00000359920 | + | 6 | 20 | 1042_1142 | 430 | 1556.0 | Compositional bias | Arg-rich |
Hgene | ARHGEF18 | chr19:7516152 | chr22:29153064 | ENST00000359920 | + | 6 | 20 | 1292_1346 | 430 | 1556.0 | Compositional bias | Pro-rich |
Hgene | ARHGEF18 | chr19:7516152 | chr22:29153064 | ENST00000319670 | + | 7 | 21 | 447_644 | 272 | 1618.0 | Domain | DH |
Hgene | ARHGEF18 | chr19:7516152 | chr22:29153064 | ENST00000319670 | + | 7 | 21 | 684_786 | 272 | 1618.0 | Domain | PH |
Hgene | ARHGEF18 | chr19:7516152 | chr22:29153064 | ENST00000359920 | + | 6 | 20 | 447_644 | 430 | 1556.0 | Domain | DH |
Hgene | ARHGEF18 | chr19:7516152 | chr22:29153064 | ENST00000359920 | + | 6 | 20 | 684_786 | 430 | 1556.0 | Domain | PH |
Hgene | ARHGEF18 | chr19:7516152 | chr22:29153064 | ENST00000319670 | + | 7 | 21 | 310_334 | 272 | 1618.0 | Zinc finger | C2H2-type%3B degenerate |
Tgene | HSCB | chr19:7516152 | chr22:29153064 | ENST00000216027 | 4 | 6 | 72_144 | 205 | 236.0 | Domain | Note=J |
Top |
Fusion Gene Sequence for ARHGEF18-HSCB |
![]() |
>6237_6237_1_ARHGEF18-HSCB_ARHGEF18_chr19_7516152_ENST00000319670_HSCB_chr22_29153064_ENST00000216027_length(transcript)=1456nt_BP=1023nt CTCGCGCGGCTTCCCGCTTCCGGCTCCCAGCTGCTAGCTACTGTGGATCTGGGGGGGCCGGACGGAGGCATCGGAGGCGGCTGCGAGAGT GGCAGAGGAGCTGGCGGAGAGCGGCCTGCGGGCGATCGGGCCGAGCCTCGCTCAAGGAGCACCCCCGGGGCACCCTCCTGTCCGATGGCA GCCCGGCCCTGTCCAGGAATGTCGGTATGACGGTCTCTCAGAAAGGGGGTCCCCAGCCAACACCGAGCCCGGCTGGCCCTGGGACGCAAC TCGGACCAATCACAGGAGAGATGGATGAAGCCGATTCTGCGTTTTTAAAATTTAAGCAGACAGCTGATGACTCTCTGTCCCTTACATCTC CAAACACCGAGTCCATTTTTGTAGAAGATCCCTACACCGCCTCGCTGAGGAGTGAGATTGAGTCAGACGGCCACGAGTTTGAAGCTGAGT CCTGGAGCCTCGCCGTGGATGCAGCCTACGCCAAGAAGCAAAAGAGGGAGGTGGTGAAAAGACAAGATGTCCTTTATGAGCTGATGCAGA CAGAGGTGCACCACGTGCGGACGCTCAAGATCATGCTGAAGGTGTACTCCAGGGCCCTGCAGGAGGAGCTGCAGTTCAGCAGCAAGGCCA TTGGCCGCCTCTTCCCATGCGCTGACGACCTGCTGGAGACGCACAGCCACTTCCTCGCTCGGCTCAAGGAGCGCCGCCAGGAGTCCCTGG AGGAGGGCAGTGACCGGAATTATGTCATCCAGAAAATCGGCGACCTCCTGGTTCAGCAGTTTTCAGGTGAAAATGGGGAGAGAATGAAAG AAAAGTACGGTGTGTTTTGTAGTGGCCACAATGAAGCTGTTAGTCATTACAAGTTGCTGCTTCAGCAAAACAAGAAATTTCAAAACTTGA TCAAGAAAATTGGCAACTTCTCCATCGTGCGGCGGCTTGGCGTGCAGGAGTGCATTCTCCTGGTTACACAACGCATAACCAAATACCCAG TGCTGGTGGAGCGCATCATCCAGAACACGGAAGATGACTTTGAAGAAGCCAAGGAAATTTTGACAAAGATGAGATACTTTTCAAATATAG AAGAAAAGATCAAGTTAAAGAAGATTCCCCTTTAATTGTGGATAGTTTAAAGTTTAAAAAATAAAGTTCTTGCTGGGCACAGTGGCTCAC ACCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGGATGACAAGGTCAGGAGTTCAAGACCAGCTTGGCCAACATAGTGAAACCCCG TCTCTGCTGAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAATCCCAGCTACTTGGTAGGCCGAGGCAGGAGAATCGCTTA AACCCGTGAGGTGGAGGTTGCAGTGAGCAGAGATCACGCAACTGCACTCCAGCTTGGGCAACAGAGTGAGACTTAATCTTGAAAAATAAA >6237_6237_1_ARHGEF18-HSCB_ARHGEF18_chr19_7516152_ENST00000319670_HSCB_chr22_29153064_ENST00000216027_length(amino acids)=344AA_BP=314 MREWQRSWRRAACGRSGRASLKEHPRGTLLSDGSPALSRNVGMTVSQKGGPQPTPSPAGPGTQLGPITGEMDEADSAFLKFKQTADDSLS LTSPNTESIFVEDPYTASLRSEIESDGHEFEAESWSLAVDAAYAKKQKREVVKRQDVLYELMQTEVHHVRTLKIMLKVYSRALQEELQFS SKAIGRLFPCADDLLETHSHFLARLKERRQESLEEGSDRNYVIQKIGDLLVQQFSGENGERMKEKYGVFCSGHNEAVSHYKLLLQQNKKF -------------------------------------------------------------- >6237_6237_2_ARHGEF18-HSCB_ARHGEF18_chr19_7516152_ENST00000359920_HSCB_chr22_29153064_ENST00000216027_length(transcript)=1977nt_BP=1544nt AAACACCATGCCCTGCCATCTCTGGGTCTTAGAGTCACCCTAACATCTGATCTAGATTAATTATCATCATGTGCGAGGTTTTGGCATGAA GCACGCCAGGCTCACCGTTTCATGATCTTAGACTATTTACAGCAAACTCAAACAGCTCACTTGCTTTTTACACCCTGCAAAGACCAAGGG AGAGCCTGGAGGGGTTGTTTTTTTTTTCTGTTTTATTCTATCAAAGCAGCAAATACTGCAATTTCCACAGTAAATGGTCACAGTGGGGAC CAATATCCTGCCCTCCAGACCCGCTGCTTCAGCCAATACAGCAAGGGAAGACGCAGCTCTGTTTTCTAGAAGGATCCCACCGAGGCATAA AAACGGCGCAGCCCAGCCTGGCGCCGCGCCGGGTCCCGGAGCCCCGGGCGCGAACATGGGGAATGCGCACTCCAAAAGCGGGGACAGGCA CAGCGCGCTCCCCGGCCGCCCCGAGCTGTCTTTTTACGGCTCTTTCCCCAGGAAATGGAGCGAGAACGTCTTCTTGGATAACGAGCTGCT GACCTCCAAGATCCTGTCTGTGCTGCGGCCGCAGTCGGAGCGGGGCTTCCGCGCCGGGGACCTCCGCTACCCGACCCACTTTCTCAGCAC CAACTCTGTCCTTGCCTCTGTCACAGCCTCGCTCAAGGAGCACCCCCGGGGCACCCTCCTGTCCGATGGCAGCCCGGCCCTGTCCAGGAA TGTCGGTATGACGGTCTCTCAGAAAGGGGGTCCCCAGCCAACACCGAGCCCGGCTGGCCCTGGGACGCAACTCGGACCAATCACAGGAGA GATGGATGAAGCCGATTCTGCGTTTTTAAAATTTAAGCAGACAGCTGATGACTCTCTGTCCCTTACATCTCCAAACACCGAGTCCATTTT TGTAGAAGATCCCTACACCGCCTCGCTGAGGAGTGAGATTGAGTCAGACGGCCACGAGTTTGAAGCTGAGTCCTGGAGCCTCGCCGTGGA TGCAGCCTACGCCAAGAAGCAAAAGAGGGAGGTGGTGAAAAGACAAGATGTCCTTTATGAGCTGATGCAGACAGAGGTGCACCACGTGCG GACGCTCAAGATCATGCTGAAGGTGTACTCCAGGGCCCTGCAGGAGGAGCTGCAGTTCAGCAGCAAGGCCATTGGCCGCCTCTTCCCATG CGCTGACGACCTGCTGGAGACGCACAGCCACTTCCTCGCTCGGCTCAAGGAGCGCCGCCAGGAGTCCCTGGAGGAGGGCAGTGACCGGAA TTATGTCATCCAGAAAATCGGCGACCTCCTGGTTCAGCAGTTTTCAGGTGAAAATGGGGAGAGAATGAAAGAAAAGTACGGTGTGTTTTG TAGTGGCCACAATGAAGCTGTTAGTCATTACAAGTTGCTGCTTCAGCAAAACAAGAAATTTCAAAACTTGATCAAGAAAATTGGCAACTT CTCCATCGTGCGGCGGCTTGGCGTGCAGGAGTGCATTCTCCTGGTTACACAACGCATAACCAAATACCCAGTGCTGGTGGAGCGCATCAT CCAGAACACGGAAGATGACTTTGAAGAAGCCAAGGAAATTTTGACAAAGATGAGATACTTTTCAAATATAGAAGAAAAGATCAAGTTAAA GAAGATTCCCCTTTAATTGTGGATAGTTTAAAGTTTAAAAAATAAAGTTCTTGCTGGGCACAGTGGCTCACACCTGTAATCCCAGCACTT TGGGAGGCTGAGGTGGGTGGATGACAAGGTCAGGAGTTCAAGACCAGCTTGGCCAACATAGTGAAACCCCGTCTCTGCTGAAAATACAAA AATTAGCCGGGCATGGTGGCGCGTGCCTGTAATCCCAGCTACTTGGTAGGCCGAGGCAGGAGAATCGCTTAAACCCGTGAGGTGGAGGTT >6237_6237_2_ARHGEF18-HSCB_ARHGEF18_chr19_7516152_ENST00000359920_HSCB_chr22_29153064_ENST00000216027_length(amino acids)=460AA_BP=430 MVTVGTNILPSRPAASANTAREDAALFSRRIPPRHKNGAAQPGAAPGPGAPGANMGNAHSKSGDRHSALPGRPELSFYGSFPRKWSENVF LDNELLTSKILSVLRPQSERGFRAGDLRYPTHFLSTNSVLASVTASLKEHPRGTLLSDGSPALSRNVGMTVSQKGGPQPTPSPAGPGTQL GPITGEMDEADSAFLKFKQTADDSLSLTSPNTESIFVEDPYTASLRSEIESDGHEFEAESWSLAVDAAYAKKQKREVVKRQDVLYELMQT EVHHVRTLKIMLKVYSRALQEELQFSSKAIGRLFPCADDLLETHSHFLARLKERRQESLEEGSDRNYVIQKIGDLLVQQFSGENGERMKE KYGVFCSGHNEAVSHYKLLLQQNKKFQNLIKKIGNFSIVRRLGVQECILLVTQRITKYPVLVERIIQNTEDDFEEAKEILTKMRYFSNIE -------------------------------------------------------------- |
Top |
Fusion Gene PPI Analysis for ARHGEF18-HSCB |
![]() |
![]() |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
Related Drugs for ARHGEF18-HSCB |
![]() (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
Related Diseases for ARHGEF18-HSCB |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | ARHGEF18 | C0035334 | Retinitis Pigmentosa | 1 | ORPHANET |
Hgene | ARHGEF18 | C4479481 | RETINITIS PIGMENTOSA 78 | 1 | CTD_human;GENOMICS_ENGLAND;UNIPROT |