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![]() | Fusion Gene Summary |
![]() | Fusion Gene ORF analysis |
![]() | Fusion Genomic Features |
![]() | Fusion Protein Features |
![]() | Fusion Gene Sequence |
![]() | Fusion Gene PPI analysis |
![]() | Related Drugs |
![]() | Related Diseases |
Fusion gene:ACAP2-APOD (FusionGDB2 ID:HG23527TG347) |
Fusion Gene Summary for ACAP2-APOD |
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Fusion gene information | Fusion gene name: ACAP2-APOD | Fusion gene ID: hg23527tg347 | Hgene | Tgene | Gene symbol | ACAP2 | APOD | Gene ID | 23527 | 347 |
Gene name | ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 | apolipoprotein D | |
Synonyms | CENTB2|CNT-B2 | - | |
Cytomap | ('ACAP2')('APOD') 3q29 | 3q29 | |
Type of gene | protein-coding | protein-coding | |
Description | arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2Arf GAP with coiled coil, ANK repeat and PH domains 2centaurin-beta-2 | apolipoprotein Dapo-D | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | P05090 | |
Ensembl transtripts involved in fusion gene | ENST00000326793, ENST00000472860, | ||
Fusion gene scores | * DoF score | 16 X 14 X 11=2464 | 5 X 6 X 5=150 |
# samples | 22 | 7 | |
** MAII score | log2(22/2464*10)=-3.48542682717024 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(7/150*10)=-1.09953567355091 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: ACAP2 [Title/Abstract] AND APOD [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | ACAP2(195101738)-APOD(195300842), # samples:3 | ||
Anticipated loss of major functional domain due to fusion event. | ACAP2-APOD seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. ACAP2-APOD seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | ACAP2 | GO:0030029 | actin filament-based process | 11062263 |
Tgene | APOD | GO:0000302 | response to reactive oxygen species | 18419796 |
Tgene | APOD | GO:0006006 | glucose metabolic process | 19176353 |
Tgene | APOD | GO:0006629 | lipid metabolic process | 19176353 |
Tgene | APOD | GO:0010642 | negative regulation of platelet-derived growth factor receptor signaling pathway | 14551159 |
Tgene | APOD | GO:0042308 | negative regulation of protein import into nucleus | 14551159 |
Tgene | APOD | GO:0048662 | negative regulation of smooth muscle cell proliferation | 14551159 |
Tgene | APOD | GO:0060588 | negative regulation of lipoprotein lipid oxidation | 18419796 |
Tgene | APOD | GO:0071638 | negative regulation of monocyte chemotactic protein-1 production | 18842892 |
Tgene | APOD | GO:1900016 | negative regulation of cytokine production involved in inflammatory response | 18842892 |
Tgene | APOD | GO:2000405 | negative regulation of T cell migration | 18842892 |
![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | OV | TCGA-24-2262-01A | ACAP2 | chr3 | 195101738 | - | APOD | chr3 | 195300842 | - |
ChimerDB4 | OV | TCGA-24-2262 | ACAP2 | chr3 | 195101737 | - | APOD | chr3 | 195300842 | - |
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Fusion Gene ORF analysis for ACAP2-APOD |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000326793 | ENST00000343267 | ACAP2 | chr3 | 195101738 | - | APOD | chr3 | 195300842 | - |
In-frame | ENST00000326793 | ENST00000343267 | ACAP2 | chr3 | 195101737 | - | APOD | chr3 | 195300842 | - |
intron-3CDS | ENST00000472860 | ENST00000343267 | ACAP2 | chr3 | 195101738 | - | APOD | chr3 | 195300842 | - |
intron-3CDS | ENST00000472860 | ENST00000343267 | ACAP2 | chr3 | 195101737 | - | APOD | chr3 | 195300842 | - |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000326793 | ACAP2 | chr3 | 195101738 | - | ENST00000343267 | APOD | chr3 | 195300842 | - | 1161 | 516 | 213 | 962 | 249 |
ENST00000326793 | ACAP2 | chr3 | 195101737 | - | ENST00000343267 | APOD | chr3 | 195300842 | - | 1161 | 516 | 213 | 962 | 249 |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000326793 | ENST00000343267 | ACAP2 | chr3 | 195101738 | - | APOD | chr3 | 195300842 | - | 0.002105662 | 0.99789435 |
ENST00000326793 | ENST00000343267 | ACAP2 | chr3 | 195101737 | - | APOD | chr3 | 195300842 | - | 0.002105662 | 0.99789435 |
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Fusion Genomic Features for ACAP2-APOD |
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Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
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Fusion Protein Features for ACAP2-APOD |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr3:195101738/chr3:195300842) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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Hgene | Tgene |
. | APOD |
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: APOD occurs in the macromolecular complex with lecithin-cholesterol acyltransferase. It is probably involved in the transport and binding of bilin. Appears to be able to transport a variety of ligands in a number of different contexts. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | ACAP2 | chr3:195101737 | chr3:195300842 | ENST00000326793 | - | 4 | 23 | 1_226 | 95 | 779.0 | Domain | Note=BAR |
Hgene | ACAP2 | chr3:195101737 | chr3:195300842 | ENST00000326793 | - | 4 | 23 | 266_361 | 95 | 779.0 | Domain | PH |
Hgene | ACAP2 | chr3:195101737 | chr3:195300842 | ENST00000326793 | - | 4 | 23 | 399_520 | 95 | 779.0 | Domain | Arf-GAP |
Hgene | ACAP2 | chr3:195101738 | chr3:195300842 | ENST00000326793 | - | 4 | 23 | 1_226 | 95 | 779.0 | Domain | Note=BAR |
Hgene | ACAP2 | chr3:195101738 | chr3:195300842 | ENST00000326793 | - | 4 | 23 | 266_361 | 95 | 779.0 | Domain | PH |
Hgene | ACAP2 | chr3:195101738 | chr3:195300842 | ENST00000326793 | - | 4 | 23 | 399_520 | 95 | 779.0 | Domain | Arf-GAP |
Hgene | ACAP2 | chr3:195101737 | chr3:195300842 | ENST00000326793 | - | 4 | 23 | 640_669 | 95 | 779.0 | Repeat | Note=ANK 1 |
Hgene | ACAP2 | chr3:195101737 | chr3:195300842 | ENST00000326793 | - | 4 | 23 | 673_702 | 95 | 779.0 | Repeat | Note=ANK 2 |
Hgene | ACAP2 | chr3:195101737 | chr3:195300842 | ENST00000326793 | - | 4 | 23 | 706_735 | 95 | 779.0 | Repeat | Note=ANK 3 |
Hgene | ACAP2 | chr3:195101738 | chr3:195300842 | ENST00000326793 | - | 4 | 23 | 640_669 | 95 | 779.0 | Repeat | Note=ANK 1 |
Hgene | ACAP2 | chr3:195101738 | chr3:195300842 | ENST00000326793 | - | 4 | 23 | 673_702 | 95 | 779.0 | Repeat | Note=ANK 2 |
Hgene | ACAP2 | chr3:195101738 | chr3:195300842 | ENST00000326793 | - | 4 | 23 | 706_735 | 95 | 779.0 | Repeat | Note=ANK 3 |
Hgene | ACAP2 | chr3:195101737 | chr3:195300842 | ENST00000326793 | - | 4 | 23 | 414_437 | 95 | 779.0 | Zinc finger | C4-type |
Hgene | ACAP2 | chr3:195101738 | chr3:195300842 | ENST00000326793 | - | 4 | 23 | 414_437 | 95 | 779.0 | Zinc finger | C4-type |
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Fusion Gene Sequence for ACAP2-APOD |
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>1212_1212_1_ACAP2-APOD_ACAP2_chr3_195101737_ENST00000326793_APOD_chr3_195300842_ENST00000343267_length(transcript)=1161nt_BP=516nt CGTTTCCCTGCGGCCAGCGCTCTACTTGGGGCGGGAGGAAGAGGGGCGGGACTGGGGCCTGACTAGTCGTCGCCGTCTTCGCGGCTGCTA TGACCAGCGGGCGAGGCGCCCTTCGCAGCTCCGCGCAACGCTAGTCGCGGCCGTGCGCCCGCCGTAGCCGTCTGCGTCCCAGCGCGGCCG CTCCCGCGGCCCCCTCGGCTTTGCCAGCGCCGCCTGCGAGGCGGAGGCAGGATGAAGATGACTGTGGATTTCGAGGAGTGTCTGAAGGAC TCGCCCCGCTTCAGGGCAGCTTTGGAAGAAGTAGAAGGTGATGTGGCAGAATTGGAACTAAAACTTGATAAGCTTGTGAAACTTTGTATT GCAATGATTGATACTGGAAAAGCCTTTTGTGTTGCAAATAAACAGTTCATGAATGGGATTCGAGACCTGGCTCAGTATTCTAGTAATGAT GCTGTCGTTGAGACAAGTTTGACCAAGTTTTCTGACAGTCTTCAAGAAATGATAAATTTTCACACATATCTCGGAAGATGGTACGAAATT GAGAAGATCCCAACAACCTTTGAGAATGGACGCTGCATCCAGGCCAACTACTCACTAATGGAAAACGGAAAGATCAAAGTGTTAAACCAG GAGTTGAGAGCTGATGGAACTGTGAATCAAATCGAAGGTGAAGCCACCCCAGTTAACCTCACAGAGCCTGCCAAGCTGGAAGTTAAGTTT TCCTGGTTTATGCCATCGGCACCGTACTGGATCCTGGCCACCGACTATGAGAACTATGCCCTCGTGTATTCCTGTACCTGCATCATCCAA CTTTTTCACGTGGATTTTGCTTGGATCTTGGCAAGAAACCCTAATCTCCCTCCAGAAACAGTGGACTCTCTAAAAAATATCCTGACTTCT AATAACATTGATGTCAAGAAAATGACGGTCACAGACCAGGTGAACTGCCCCAAGCTCTCGTAACCAGGTTCTACAGGGAGGCTGCACCCA CTCCATGTTACTTCTGCTTCGCTTTCCCCTACCCCCCCCCCATAAAGACAAACCAATCAACCACGACAAAGGAAGTTGACCTGAACATGT >1212_1212_1_ACAP2-APOD_ACAP2_chr3_195101737_ENST00000326793_APOD_chr3_195300842_ENST00000343267_length(amino acids)=249AA_BP=101 MRGGGRMKMTVDFEECLKDSPRFRAALEEVEGDVAELELKLDKLVKLCIAMIDTGKAFCVANKQFMNGIRDLAQYSSNDAVVETSLTKFS DSLQEMINFHTYLGRWYEIEKIPTTFENGRCIQANYSLMENGKIKVLNQELRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMPSAPYWI -------------------------------------------------------------- >1212_1212_2_ACAP2-APOD_ACAP2_chr3_195101738_ENST00000326793_APOD_chr3_195300842_ENST00000343267_length(transcript)=1161nt_BP=516nt CGTTTCCCTGCGGCCAGCGCTCTACTTGGGGCGGGAGGAAGAGGGGCGGGACTGGGGCCTGACTAGTCGTCGCCGTCTTCGCGGCTGCTA TGACCAGCGGGCGAGGCGCCCTTCGCAGCTCCGCGCAACGCTAGTCGCGGCCGTGCGCCCGCCGTAGCCGTCTGCGTCCCAGCGCGGCCG CTCCCGCGGCCCCCTCGGCTTTGCCAGCGCCGCCTGCGAGGCGGAGGCAGGATGAAGATGACTGTGGATTTCGAGGAGTGTCTGAAGGAC TCGCCCCGCTTCAGGGCAGCTTTGGAAGAAGTAGAAGGTGATGTGGCAGAATTGGAACTAAAACTTGATAAGCTTGTGAAACTTTGTATT GCAATGATTGATACTGGAAAAGCCTTTTGTGTTGCAAATAAACAGTTCATGAATGGGATTCGAGACCTGGCTCAGTATTCTAGTAATGAT GCTGTCGTTGAGACAAGTTTGACCAAGTTTTCTGACAGTCTTCAAGAAATGATAAATTTTCACACATATCTCGGAAGATGGTACGAAATT GAGAAGATCCCAACAACCTTTGAGAATGGACGCTGCATCCAGGCCAACTACTCACTAATGGAAAACGGAAAGATCAAAGTGTTAAACCAG GAGTTGAGAGCTGATGGAACTGTGAATCAAATCGAAGGTGAAGCCACCCCAGTTAACCTCACAGAGCCTGCCAAGCTGGAAGTTAAGTTT TCCTGGTTTATGCCATCGGCACCGTACTGGATCCTGGCCACCGACTATGAGAACTATGCCCTCGTGTATTCCTGTACCTGCATCATCCAA CTTTTTCACGTGGATTTTGCTTGGATCTTGGCAAGAAACCCTAATCTCCCTCCAGAAACAGTGGACTCTCTAAAAAATATCCTGACTTCT AATAACATTGATGTCAAGAAAATGACGGTCACAGACCAGGTGAACTGCCCCAAGCTCTCGTAACCAGGTTCTACAGGGAGGCTGCACCCA CTCCATGTTACTTCTGCTTCGCTTTCCCCTACCCCCCCCCCATAAAGACAAACCAATCAACCACGACAAAGGAAGTTGACCTGAACATGT >1212_1212_2_ACAP2-APOD_ACAP2_chr3_195101738_ENST00000326793_APOD_chr3_195300842_ENST00000343267_length(amino acids)=249AA_BP=101 MRGGGRMKMTVDFEECLKDSPRFRAALEEVEGDVAELELKLDKLVKLCIAMIDTGKAFCVANKQFMNGIRDLAQYSSNDAVVETSLTKFS DSLQEMINFHTYLGRWYEIEKIPTTFENGRCIQANYSLMENGKIKVLNQELRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMPSAPYWI -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for ACAP2-APOD |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for ACAP2-APOD |
![]() (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Tgene | APOD | P05090 | DB09130 | Copper | Small molecule | Approved|Investigational | |
Tgene | APOD | P05090 | DB00162 | Vitamin A | Ligand | Small molecule | Approved|Nutraceutical|Vet_approved |
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Related Diseases for ACAP2-APOD |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | C0036341 | Schizophrenia | 3 | PSYGENET | |
Tgene | C0005586 | Bipolar Disorder | 1 | PSYGENET | |
Tgene | C0017638 | Glioma | 1 | CTD_human | |
Tgene | C0023186 | Learning Disorders | 1 | CTD_human | |
Tgene | C0086439 | Hypokinesia | 1 | CTD_human | |
Tgene | C0233565 | Bradykinesia | 1 | CTD_human | |
Tgene | C0242684 | Hypodynamia | 1 | CTD_human | |
Tgene | C0259783 | mixed gliomas | 1 | CTD_human | |
Tgene | C0270715 | Degenerative Diseases, Central Nervous System | 1 | CTD_human | |
Tgene | C0524851 | Neurodegenerative Disorders | 1 | CTD_human | |
Tgene | C0555198 | Malignant Glioma | 1 | CTD_human | |
Tgene | C0751262 | Adult Learning Disorders | 1 | CTD_human | |
Tgene | C0751263 | Learning Disturbance | 1 | CTD_human | |
Tgene | C0751265 | Learning Disabilities | 1 | CTD_human | |
Tgene | C0751701 | Hypokinesia, Antiorthostatic | 1 | CTD_human | |
Tgene | C0751733 | Degenerative Diseases, Spinal Cord | 1 | CTD_human | |
Tgene | C1330966 | Developmental Academic Disorder | 1 | CTD_human |