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![]() | Fusion Gene Summary |
![]() | Fusion Gene ORF analysis |
![]() | Fusion Genomic Features |
![]() | Fusion Protein Features |
![]() | Fusion Gene Sequence |
![]() | Fusion Gene PPI analysis |
![]() | Related Drugs |
![]() | Related Diseases |
Fusion gene:KCNMA1-FARP1 (FusionGDB2 ID:HG3778TG10160) |
Fusion Gene Summary for KCNMA1-FARP1 |
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Fusion gene information | Fusion gene name: KCNMA1-FARP1 | Fusion gene ID: hg3778tg10160 | Hgene | Tgene | Gene symbol | KCNMA1 | FARP1 | Gene ID | 3778 | 10160 |
Gene name | potassium calcium-activated channel subfamily M alpha 1 | FERM, ARH/RhoGEF and pleckstrin domain protein 1 | |
Synonyms | BKTM|CADEDS|IEG16|KCa1.1|LIWAS|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 | CDEP|FARP1-IT1|PLEKHC2|PPP1R75 | |
Cytomap | ('KCNMA1')('FARP1') 10q22.3 | 13q32.2 | |
Type of gene | protein-coding | protein-coding | |
Description | calcium-activated potassium channel subunit alpha-1uncharacterized proteinBK channel alpha subunitBKCA alpha subunitbig potassium channel alpha subunitcalcium-activated potassium channel, subfamily M subunit alpha-1k(VCA)alphamaxi-K channel HSLOpo | FERM, ARHGEF and pleckstrin domain-containing protein 1FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)FERM, RhoGEF and pleckstrin domain-containing protein 1PH domain-containing family C member 2chondrocyte-derived ezrin-li | |
Modification date | 20200315 | 20200313 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000286627, ENST00000286628, ENST00000354353, ENST00000372440, ENST00000372443, ENST00000404771, ENST00000404857, ENST00000406533, ENST00000480683, ENST00000481070, ENST00000484507, | ||
Fusion gene scores | * DoF score | 20 X 17 X 10=3400 | 19 X 19 X 8=2888 |
# samples | 25 | 22 | |
** MAII score | log2(25/3400*10)=-3.76553474636298 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(22/2888*10)=-3.71449531336251 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: KCNMA1 [Title/Abstract] AND FARP1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | KCNMA1(79397023)-FARP1(98865474), # samples:3 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | KCNMA1 | GO:0001666 | response to hypoxia | 15528406 |
Hgene | KCNMA1 | GO:0006813 | potassium ion transport | 7573516|7877450|11245614|12388065|17706472|18458941 |
Hgene | KCNMA1 | GO:0006970 | response to osmotic stress | 10840032|12388065 |
Hgene | KCNMA1 | GO:0030007 | cellular potassium ion homeostasis | 11245614 |
Hgene | KCNMA1 | GO:0034465 | response to carbon monoxide | 15528406 |
Hgene | KCNMA1 | GO:0042391 | regulation of membrane potential | 7877450|7993625 |
Hgene | KCNMA1 | GO:0045794 | negative regulation of cell volume | 12388065 |
Hgene | KCNMA1 | GO:0051592 | response to calcium ion | 12388065|18458941 |
Hgene | KCNMA1 | GO:0060073 | micturition | 11641143 |
Hgene | KCNMA1 | GO:0060083 | smooth muscle contraction involved in micturition | 11641143 |
Tgene | FARP1 | GO:0010923 | negative regulation of phosphatase activity | 19389623 |
![]() * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | PRAD | TCGA-HC-7209-01A | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
ChimerDB4 | PRAD | TCGA-HC-7209 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
ChimerDB4 | PRAD | TCGA-HC-7209 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
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Fusion Gene ORF analysis for KCNMA1-FARP1 |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-5UTR | ENST00000286627 | ENST00000319562 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000286627 | ENST00000319562 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000286627 | ENST00000376581 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000286627 | ENST00000376581 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000286627 | ENST00000376586 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000286627 | ENST00000376586 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000286627 | ENST00000595437 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000286627 | ENST00000595437 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000286628 | ENST00000319562 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000286628 | ENST00000319562 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000286628 | ENST00000376581 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000286628 | ENST00000376581 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000286628 | ENST00000376586 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000286628 | ENST00000376586 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000286628 | ENST00000595437 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000286628 | ENST00000595437 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000354353 | ENST00000319562 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000354353 | ENST00000319562 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000354353 | ENST00000376581 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000354353 | ENST00000376581 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000354353 | ENST00000376586 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000354353 | ENST00000376586 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000354353 | ENST00000595437 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000354353 | ENST00000595437 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000372440 | ENST00000319562 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000372440 | ENST00000319562 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000372440 | ENST00000376581 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000372440 | ENST00000376581 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000372440 | ENST00000376586 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000372440 | ENST00000376586 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000372440 | ENST00000595437 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000372440 | ENST00000595437 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000372443 | ENST00000319562 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000372443 | ENST00000319562 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000372443 | ENST00000376581 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000372443 | ENST00000376581 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000372443 | ENST00000376586 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000372443 | ENST00000376586 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000372443 | ENST00000595437 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000372443 | ENST00000595437 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000404771 | ENST00000319562 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000404771 | ENST00000319562 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000404771 | ENST00000376581 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000404771 | ENST00000376581 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000404771 | ENST00000376586 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000404771 | ENST00000376586 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000404771 | ENST00000595437 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000404771 | ENST00000595437 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000404857 | ENST00000319562 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000404857 | ENST00000319562 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000404857 | ENST00000376581 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000404857 | ENST00000376581 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000404857 | ENST00000376586 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000404857 | ENST00000376586 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000404857 | ENST00000595437 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000404857 | ENST00000595437 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000406533 | ENST00000319562 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000406533 | ENST00000319562 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000406533 | ENST00000376581 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000406533 | ENST00000376581 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000406533 | ENST00000376586 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000406533 | ENST00000376586 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000406533 | ENST00000595437 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000406533 | ENST00000595437 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000480683 | ENST00000319562 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000480683 | ENST00000319562 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000480683 | ENST00000376581 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000480683 | ENST00000376581 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000480683 | ENST00000376586 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000480683 | ENST00000376586 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000480683 | ENST00000595437 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000480683 | ENST00000595437 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000481070 | ENST00000319562 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000481070 | ENST00000319562 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000481070 | ENST00000376581 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000481070 | ENST00000376581 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000481070 | ENST00000376586 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000481070 | ENST00000376586 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-5UTR | ENST00000481070 | ENST00000595437 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-5UTR | ENST00000481070 | ENST00000595437 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-intron | ENST00000286627 | ENST00000593990 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-intron | ENST00000286627 | ENST00000593990 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-intron | ENST00000286628 | ENST00000593990 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-intron | ENST00000286628 | ENST00000593990 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-intron | ENST00000354353 | ENST00000593990 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-intron | ENST00000354353 | ENST00000593990 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-intron | ENST00000372440 | ENST00000593990 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-intron | ENST00000372440 | ENST00000593990 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-intron | ENST00000372443 | ENST00000593990 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-intron | ENST00000372443 | ENST00000593990 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-intron | ENST00000404771 | ENST00000593990 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-intron | ENST00000404771 | ENST00000593990 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-intron | ENST00000404857 | ENST00000593990 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-intron | ENST00000404857 | ENST00000593990 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-intron | ENST00000406533 | ENST00000593990 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-intron | ENST00000406533 | ENST00000593990 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-intron | ENST00000480683 | ENST00000593990 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-intron | ENST00000480683 | ENST00000593990 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
5CDS-intron | ENST00000481070 | ENST00000593990 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
5CDS-intron | ENST00000481070 | ENST00000593990 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
intron-5UTR | ENST00000484507 | ENST00000319562 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
intron-5UTR | ENST00000484507 | ENST00000319562 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
intron-5UTR | ENST00000484507 | ENST00000376581 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
intron-5UTR | ENST00000484507 | ENST00000376581 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
intron-5UTR | ENST00000484507 | ENST00000376586 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
intron-5UTR | ENST00000484507 | ENST00000376586 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
intron-5UTR | ENST00000484507 | ENST00000595437 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
intron-5UTR | ENST00000484507 | ENST00000595437 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
intron-intron | ENST00000484507 | ENST00000593990 | KCNMA1 | chr10 | 79397023 | - | FARP1 | chr13 | 98865474 | + |
intron-intron | ENST00000484507 | ENST00000593990 | KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
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Fusion Genomic Features for KCNMA1-FARP1 |
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Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + | 5.91E-09 | 1 |
KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + | 5.91E-09 | 1 |
KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + | 5.91E-09 | 1 |
KCNMA1 | chr10 | 79397022 | - | FARP1 | chr13 | 98865473 | + | 5.91E-09 | 1 |
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Fusion Protein Features for KCNMA1-FARP1 |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:79397023/:98865474) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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Hgene | Tgene |
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FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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Fusion Gene Sequence for KCNMA1-FARP1 |
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Fusion Gene PPI Analysis for KCNMA1-FARP1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for KCNMA1-FARP1 |
![]() (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for KCNMA1-FARP1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | KCNMA1 | C1836173 | Generalized Epilepsy and Paroxysmal Dyskinesia | 3 | CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT |
Hgene | KCNMA1 | C0004352 | Autistic Disorder | 1 | CTD_human |
Hgene | KCNMA1 | C0005944 | Metabolic Bone Disorder | 1 | CTD_human |
Hgene | KCNMA1 | C0007134 | Renal Cell Carcinoma | 1 | CTD_human |
Hgene | KCNMA1 | C0018273 | Growth Disorders | 1 | CTD_human |
Hgene | KCNMA1 | C0019284 | Diaphragmatic Hernia | 1 | CTD_human |
Hgene | KCNMA1 | C0020542 | Pulmonary Hypertension | 1 | CTD_human |
Hgene | KCNMA1 | C0028754 | Obesity | 1 | CTD_human |
Hgene | KCNMA1 | C0028756 | Obesity, Morbid | 1 | CTD_human |
Hgene | KCNMA1 | C0029453 | Osteopenia | 1 | CTD_human |
Hgene | KCNMA1 | C0038220 | Status Epilepticus | 1 | CTD_human |
Hgene | KCNMA1 | C0043094 | Weight Gain | 1 | CTD_human |
Hgene | KCNMA1 | C0270823 | Petit mal status | 1 | CTD_human |
Hgene | KCNMA1 | C0279702 | Conventional (Clear Cell) Renal Cell Carcinoma | 1 | CTD_human |
Hgene | KCNMA1 | C0311335 | Grand Mal Status Epilepticus | 1 | CTD_human |
Hgene | KCNMA1 | C0393734 | Complex Partial Status Epilepticus | 1 | CTD_human |
Hgene | KCNMA1 | C0410916 | Neonatal Death | 1 | CTD_human |
Hgene | KCNMA1 | C0701826 | Perinatal death | 1 | CTD_human |
Hgene | KCNMA1 | C0751522 | Status Epilepticus, Subclinical | 1 | CTD_human |
Hgene | KCNMA1 | C0751523 | Non-Convulsive Status Epilepticus | 1 | CTD_human |
Hgene | KCNMA1 | C0751524 | Simple Partial Status Epilepticus | 1 | CTD_human |
Hgene | KCNMA1 | C1266042 | Chromophobe Renal Cell Carcinoma | 1 | CTD_human |
Hgene | KCNMA1 | C1266043 | Sarcomatoid Renal Cell Carcinoma | 1 | CTD_human |
Hgene | KCNMA1 | C1266044 | Collecting Duct Carcinoma of the Kidney | 1 | CTD_human |
Hgene | KCNMA1 | C1306837 | Papillary Renal Cell Carcinoma | 1 | CTD_human |
Hgene | KCNMA1 | C4539985 | CEREBELLAR ATROPHY, DEVELOPMENTAL DELAY, AND SEIZURES | 1 | GENOMICS_ENGLAND |
Tgene | C0013146 | Drug abuse | 1 | CTD_human | |
Tgene | C0013170 | Drug habituation | 1 | CTD_human | |
Tgene | C0013222 | Drug Use Disorders | 1 | CTD_human | |
Tgene | C0029231 | Organic Mental Disorders, Substance-Induced | 1 | CTD_human | |
Tgene | C0038580 | Substance Dependence | 1 | CTD_human | |
Tgene | C0038586 | Substance Use Disorders | 1 | CTD_human | |
Tgene | C0236969 | Substance-Related Disorders | 1 | CTD_human | |
Tgene | C0740858 | Substance abuse problem | 1 | CTD_human | |
Tgene | C1510472 | Drug Dependence | 1 | CTD_human | |
Tgene | C4316881 | Prescription Drug Abuse | 1 | CTD_human |