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![]() | Fusion Gene Summary |
![]() | Fusion Gene ORF analysis |
![]() | Fusion Genomic Features |
![]() | Fusion Protein Features |
![]() | Fusion Gene Sequence |
![]() | Fusion Gene PPI analysis |
![]() | Related Drugs |
![]() | Related Diseases |
Fusion gene:ARL1-UBE2N (FusionGDB2 ID:HG400TG7334) |
Fusion Gene Summary for ARL1-UBE2N |
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Fusion gene information | Fusion gene name: ARL1-UBE2N | Fusion gene ID: hg400tg7334 | Hgene | Tgene | Gene symbol | ARL1 | UBE2N | Gene ID | 400 | 7334 |
Gene name | ADP ribosylation factor like GTPase 1 | ubiquitin conjugating enzyme E2 N | |
Synonyms | ARFL1 | HEL-S-71|UBC13|UBCHBEN; UBC13|UbcH-ben|UbcH13 | |
Cytomap | ('ARL1')('UBE2N') 12q23.2 | 12q22 | |
Type of gene | protein-coding | protein-coding | |
Description | ADP-ribosylation factor-like protein 1ADP-ribosylation factor-like 1 | ubiquitin-conjugating enzyme E2 NE2 ubiquitin-conjugating enzyme Nbendless-like ubiquitin conjugating enzymeepididymis secretory protein Li 71ubiquitin carrier protein Nubiquitin conjugating enzyme E2Nubiquitin-conjugating enzyme E2N (UBC13 homolog, | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | P40616 | . | |
Ensembl transtripts involved in fusion gene | ENST00000261636, ENST00000539055, ENST00000551671, ENST00000549302, ENST00000551688, ENST00000536227, ENST00000551828, | ||
Fusion gene scores | * DoF score | 2 X 2 X 2=8 | 9 X 5 X 6=270 |
# samples | 2 | 12 | |
** MAII score | log2(2/8*10)=1.32192809488736 | log2(12/270*10)=-1.16992500144231 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: ARL1 [Title/Abstract] AND UBE2N [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | ARL1(101801420)-UBE2N(93805075), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | ARL1 | GO:0009404 | toxin metabolic process | 9624189 |
Hgene | ARL1 | GO:0031584 | activation of phospholipase D activity | 9624189 |
Tgene | UBE2N | GO:0070534 | protein K63-linked ubiquitination | 16307917|20061386|21512573|31006531 |
![]() * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | SARC | TCGA-DX-A6BF-01A | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
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Fusion Gene ORF analysis for ARL1-UBE2N |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-5UTR | ENST00000261636 | ENST00000549833 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
5CDS-5UTR | ENST00000261636 | ENST00000552442 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
5CDS-5UTR | ENST00000539055 | ENST00000549833 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
5CDS-5UTR | ENST00000539055 | ENST00000552442 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
5CDS-5UTR | ENST00000551671 | ENST00000549833 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
5CDS-5UTR | ENST00000551671 | ENST00000552442 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
5CDS-intron | ENST00000261636 | ENST00000318066 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
5CDS-intron | ENST00000261636 | ENST00000548946 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
5CDS-intron | ENST00000261636 | ENST00000550657 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
5CDS-intron | ENST00000539055 | ENST00000318066 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
5CDS-intron | ENST00000539055 | ENST00000548946 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
5CDS-intron | ENST00000539055 | ENST00000550657 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
5CDS-intron | ENST00000551671 | ENST00000318066 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
5CDS-intron | ENST00000551671 | ENST00000548946 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
5CDS-intron | ENST00000551671 | ENST00000550657 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
5UTR-5UTR | ENST00000549302 | ENST00000549833 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
5UTR-5UTR | ENST00000549302 | ENST00000552442 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
5UTR-5UTR | ENST00000551688 | ENST00000549833 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
5UTR-5UTR | ENST00000551688 | ENST00000552442 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
5UTR-intron | ENST00000549302 | ENST00000318066 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
5UTR-intron | ENST00000549302 | ENST00000548946 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
5UTR-intron | ENST00000549302 | ENST00000550657 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
5UTR-intron | ENST00000551688 | ENST00000318066 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
5UTR-intron | ENST00000551688 | ENST00000548946 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
5UTR-intron | ENST00000551688 | ENST00000550657 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
intron-5UTR | ENST00000536227 | ENST00000549833 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
intron-5UTR | ENST00000536227 | ENST00000552442 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
intron-5UTR | ENST00000551828 | ENST00000549833 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
intron-5UTR | ENST00000551828 | ENST00000552442 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
intron-intron | ENST00000536227 | ENST00000318066 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
intron-intron | ENST00000536227 | ENST00000548946 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
intron-intron | ENST00000536227 | ENST00000550657 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
intron-intron | ENST00000551828 | ENST00000318066 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
intron-intron | ENST00000551828 | ENST00000548946 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
intron-intron | ENST00000551828 | ENST00000550657 | ARL1 | chr12 | 101801420 | - | UBE2N | chr12 | 93805075 | - |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
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Fusion Genomic Features for ARL1-UBE2N |
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Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
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Fusion Protein Features for ARL1-UBE2N |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:101801420/:93805075) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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Hgene | Tgene |
ARL1 | . |
FUNCTION: GTP-binding protein that recruits several effectors, such as golgins, arfaptins and Arf-GEFs to the trans-Golgi network, and modulates their functions at the Golgi complex (PubMed:9624189, PubMed:21239483, PubMed:27436755, PubMed:22679020, PubMed:27373159). Plays thereby a role in a wide range of fundamental cellular processes, including cell polarity, innate immunity, or protein secretion mediated by arfaptins, which were shown to play a role in maintaining insulin secretion from pancreatic beta cells (PubMed:22981988). {ECO:0000269|PubMed:21239483, ECO:0000269|PubMed:22679020, ECO:0000269|PubMed:22981988, ECO:0000269|PubMed:27373159, ECO:0000269|PubMed:27436755, ECO:0000269|PubMed:9624189}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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Fusion Gene Sequence for ARL1-UBE2N |
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Fusion Gene PPI Analysis for ARL1-UBE2N |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for ARL1-UBE2N |
![]() (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for ARL1-UBE2N |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | C0012684 | Blastocyst Disintegration | 1 | CTD_human | |
Tgene | C0013937 | Embryo Resorption | 1 | CTD_human | |
Tgene | C0752350 | Embryo Death | 1 | CTD_human | |
Tgene | C0752351 | Embryo Loss | 1 | CTD_human | |
Tgene | C1136082 | Embryo Disintegration | 1 | CTD_human |