Fusion Gene Studies
in Kim Lab

FusionBase FusionGDB FusionGDB2 FusionPDB FusionNeoAntigen FusionAI FusionNW FGviewer Publication Contact
FusionGDB Logo

Home

Download

Statistics

Examples

Help

Contact

Center for Computational Systems Medicine
leaf

Fusion Gene Summary

leaf

Fusion Gene ORF analysis

leaf

Fusion Genomic Features

leaf

Fusion Protein Features

leaf

Fusion Gene Sequence

leaf

Fusion Gene PPI analysis

leaf

Related Drugs

leaf

Related Diseases

Fusion gene:CTAGE5-PNN (FusionGDB2 ID:HG4253TG5411)

Fusion Gene Summary for CTAGE5-PNN

check button Fusion gene summary
Fusion gene informationFusion gene name: CTAGE5-PNN
Fusion gene ID: hg4253tg5411
HgeneTgene
Gene symbol

CTAGE5

PNN

Gene ID

4253

5411

Gene nameMIA SH3 domain ER export factor 2pinin, desmosome associated protein
SynonymsCTAGE5|MEA6|MGEA|MGEA11|MGEA6|TALIDRS|DRSP|SDK3|memA
Cytomap('CTAGE5')('PNN')

14q21.1

14q21.1

Type of geneprotein-codingprotein-coding
Descriptionmelanoma inhibitory activity protein 2CTAGE family member 5, ER export factorCTAGE family, member 5TANGO1-likecutaneous T-cell lymphoma-associated antigen 5melanoma inhibitory activity 2meningioma expressed antigen 6 (coiled-coil proline-rich)meninpinin140 kDa nuclear and cell adhesion-related phosphoproteinSR-like proteindesmosome-associated proteindomain-rich serine proteinmelanoma metastasis clone A proteinneutrophil proteinnuclear protein SDK3
Modification date2020031320200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000553383, ENST00000280083, 
ENST00000341502, ENST00000341749, 
ENST00000348007, ENST00000396158, 
ENST00000396165, ENST00000553352, 
ENST00000556148, ENST00000557038, 
Fusion gene scores* DoF score6 X 5 X 5=1506 X 7 X 4=168
# samples 87
** MAII scorelog2(8/150*10)=-0.906890595608519
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(7/168*10)=-1.26303440583379
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: CTAGE5 [Title/Abstract] AND PNN [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointCTAGE5(39818181)-PNN(39648295), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID


check button Fusion gene information
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4UCECTCGA-EO-A1Y7-01ACTAGE5chr14

39818181

+PNNchr14

39648295

+


Top

Fusion Gene ORF analysis for CTAGE5-PNN

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
3UTR-3UTRENST00000553383ENST00000216832CTAGE5chr14

39818181

+PNNchr14

39648295

+
3UTR-3UTRENST00000553383ENST00000553331CTAGE5chr14

39818181

+PNNchr14

39648295

+
3UTR-intronENST00000553383ENST00000556530CTAGE5chr14

39818181

+PNNchr14

39648295

+
3UTR-intronENST00000553383ENST00000557680CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-3UTRENST00000280083ENST00000216832CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-3UTRENST00000280083ENST00000553331CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-3UTRENST00000341502ENST00000216832CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-3UTRENST00000341502ENST00000553331CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-3UTRENST00000341749ENST00000216832CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-3UTRENST00000341749ENST00000553331CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-3UTRENST00000348007ENST00000216832CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-3UTRENST00000348007ENST00000553331CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-3UTRENST00000396158ENST00000216832CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-3UTRENST00000396158ENST00000553331CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-3UTRENST00000396165ENST00000216832CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-3UTRENST00000396165ENST00000553331CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-3UTRENST00000553352ENST00000216832CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-3UTRENST00000553352ENST00000553331CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-3UTRENST00000556148ENST00000216832CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-3UTRENST00000556148ENST00000553331CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-3UTRENST00000557038ENST00000216832CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-3UTRENST00000557038ENST00000553331CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-intronENST00000280083ENST00000556530CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-intronENST00000280083ENST00000557680CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-intronENST00000341502ENST00000556530CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-intronENST00000341502ENST00000557680CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-intronENST00000341749ENST00000556530CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-intronENST00000341749ENST00000557680CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-intronENST00000348007ENST00000556530CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-intronENST00000348007ENST00000557680CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-intronENST00000396158ENST00000556530CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-intronENST00000396158ENST00000557680CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-intronENST00000396165ENST00000556530CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-intronENST00000396165ENST00000557680CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-intronENST00000553352ENST00000556530CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-intronENST00000553352ENST00000557680CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-intronENST00000556148ENST00000556530CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-intronENST00000556148ENST00000557680CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-intronENST00000557038ENST00000556530CTAGE5chr14

39818181

+PNNchr14

39648295

+
5CDS-intronENST00000557038ENST00000557680CTAGE5chr14

39818181

+PNNchr14

39648295

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

Top

Fusion Genomic Features for CTAGE5-PNN


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
CTAGE5chr1439818181+PNNchr1439648293+5.03E-060.999995
CTAGE5chr1439818181+PNNchr1439648293+5.03E-060.999995


check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

Top

Fusion Protein Features for CTAGE5-PNN


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:39818181/:39648295)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


Top

Fusion Gene Sequence for CTAGE5-PNN


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

Top

Fusion Gene PPI Analysis for CTAGE5-PNN


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


Top

Related Drugs for CTAGE5-PNN


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

Related Diseases for CTAGE5-PNN


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource