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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:ABCC1-C16orf45 (FusionGDB2 ID:HG4363TG89927)

Fusion Gene Summary for ABCC1-C16orf45

check button Fusion gene summary
Fusion gene informationFusion gene name: ABCC1-C16orf45
Fusion gene ID: hg4363tg89927
HgeneTgene
Gene symbol

ABCC1

C16orf45

Gene ID

4363

89927

Gene nameATP binding cassette subfamily C member 1bMERB domain containing 1
SynonymsABC29|ABCC|GS-X|MRP|MRP1C16orf45|MINP
Cytomap('ABCC1')('C16orf45')

16p13.11

16p13.11

Type of geneprotein-codingprotein-coding
Descriptionmultidrug resistance-associated protein 1ATP-binding cassette transporter variant ABCC1delta-ex13ATP-binding cassette transporter variant ABCC1delta-ex13&14ATP-binding cassette transporter variant ABCC1delta-ex25ATP-binding cassette transporter varianbMERB domain-containing protein 1migration inhibitory proteinuncharacterized protein C16orf45
Modification date2020031320200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000345148, ENST00000346370, 
ENST00000349029, ENST00000351154, 
ENST00000399408, ENST00000399410, 
ENST00000576557, 
Fusion gene scores* DoF score11 X 10 X 6=66014 X 11 X 8=1232
# samples 1416
** MAII scorelog2(14/660*10)=-2.23703919730085
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(16/1232*10)=-2.94485844580754
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: ABCC1 [Title/Abstract] AND C16orf45 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointABCC1(16043656)-C16orf45(15609161), # samples:1
ABCC1(16043656)-C16orf45(15609162), # samples:1
ABCC1(16043656)-C16orf45(15661840), # samples:1
Anticipated loss of major functional domain due to fusion event.ABCC1-C16orf45 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
ABCC1-C16orf45 seems lost the major protein functional domain in Hgene partner, which is a IUPHAR drug target due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID


check button Fusion gene information
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4CESCTCGA-VS-A953-01AABCC1chr16

16043656

+C16orf45chr16

15609162

+
ChimerDB4CESCTCGA-VS-A953ABCC1chr16

16043656

+C16orf45chr16

15609161

+
ChimerDB4THYMTCGA-4V-A9QJABCC1chr16

16043656

+C16orf45chr16

15661840

+


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Fusion Gene ORF analysis for ABCC1-C16orf45

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-intronENST00000345148ENST00000561692ABCC1chr16

16043656

+C16orf45chr16

15609162

+
5CDS-intronENST00000345148ENST00000561692ABCC1chr16

16043656

+C16orf45chr16

15609161

+
5CDS-intronENST00000345148ENST00000565913ABCC1chr16

16043656

+C16orf45chr16

15609162

+
5CDS-intronENST00000345148ENST00000565913ABCC1chr16

16043656

+C16orf45chr16

15609161

+
5CDS-intronENST00000345148ENST00000565913ABCC1chr16

16043656

+C16orf45chr16

15661840

+
5CDS-intronENST00000346370ENST00000561692ABCC1chr16

16043656

+C16orf45chr16

15609162

+
5CDS-intronENST00000346370ENST00000561692ABCC1chr16

16043656

+C16orf45chr16

15609161

+
5CDS-intronENST00000346370ENST00000565913ABCC1chr16

16043656

+C16orf45chr16

15609162

+
5CDS-intronENST00000346370ENST00000565913ABCC1chr16

16043656

+C16orf45chr16

15609161

+
5CDS-intronENST00000346370ENST00000565913ABCC1chr16

16043656

+C16orf45chr16

15661840

+
5CDS-intronENST00000349029ENST00000561692ABCC1chr16

16043656

+C16orf45chr16

15609162

+
5CDS-intronENST00000349029ENST00000561692ABCC1chr16

16043656

+C16orf45chr16

15609161

+
5CDS-intronENST00000349029ENST00000565913ABCC1chr16

16043656

+C16orf45chr16

15609162

+
5CDS-intronENST00000349029ENST00000565913ABCC1chr16

16043656

+C16orf45chr16

15609161

+
5CDS-intronENST00000349029ENST00000565913ABCC1chr16

16043656

+C16orf45chr16

15661840

+
5CDS-intronENST00000351154ENST00000561692ABCC1chr16

16043656

+C16orf45chr16

15609162

+
5CDS-intronENST00000351154ENST00000561692ABCC1chr16

16043656

+C16orf45chr16

15609161

+
5CDS-intronENST00000351154ENST00000565913ABCC1chr16

16043656

+C16orf45chr16

15609162

+
5CDS-intronENST00000351154ENST00000565913ABCC1chr16

16043656

+C16orf45chr16

15609161

+
5CDS-intronENST00000351154ENST00000565913ABCC1chr16

16043656

+C16orf45chr16

15661840

+
5CDS-intronENST00000399408ENST00000561692ABCC1chr16

16043656

+C16orf45chr16

15609162

+
5CDS-intronENST00000399408ENST00000561692ABCC1chr16

16043656

+C16orf45chr16

15609161

+
5CDS-intronENST00000399408ENST00000565913ABCC1chr16

16043656

+C16orf45chr16

15609162

+
5CDS-intronENST00000399408ENST00000565913ABCC1chr16

16043656

+C16orf45chr16

15609161

+
5CDS-intronENST00000399408ENST00000565913ABCC1chr16

16043656

+C16orf45chr16

15661840

+
5CDS-intronENST00000399410ENST00000561692ABCC1chr16

16043656

+C16orf45chr16

15609162

+
5CDS-intronENST00000399410ENST00000561692ABCC1chr16

16043656

+C16orf45chr16

15609161

+
5CDS-intronENST00000399410ENST00000565913ABCC1chr16

16043656

+C16orf45chr16

15609162

+
5CDS-intronENST00000399410ENST00000565913ABCC1chr16

16043656

+C16orf45chr16

15609161

+
5CDS-intronENST00000399410ENST00000565913ABCC1chr16

16043656

+C16orf45chr16

15661840

+
Frame-shiftENST00000345148ENST00000300006ABCC1chr16

16043656

+C16orf45chr16

15609162

+
Frame-shiftENST00000345148ENST00000300006ABCC1chr16

16043656

+C16orf45chr16

15609161

+
Frame-shiftENST00000345148ENST00000300006ABCC1chr16

16043656

+C16orf45chr16

15661840

+
Frame-shiftENST00000345148ENST00000452191ABCC1chr16

16043656

+C16orf45chr16

15609162

+
Frame-shiftENST00000345148ENST00000452191ABCC1chr16

16043656

+C16orf45chr16

15609161

+
Frame-shiftENST00000345148ENST00000452191ABCC1chr16

16043656

+C16orf45chr16

15661840

+
Frame-shiftENST00000345148ENST00000561692ABCC1chr16

16043656

+C16orf45chr16

15661840

+
Frame-shiftENST00000345148ENST00000566490ABCC1chr16

16043656

+C16orf45chr16

15609162

+
Frame-shiftENST00000345148ENST00000566490ABCC1chr16

16043656

+C16orf45chr16

15609161

+
Frame-shiftENST00000345148ENST00000566490ABCC1chr16

16043656

+C16orf45chr16

15661840

+
Frame-shiftENST00000346370ENST00000300006ABCC1chr16

16043656

+C16orf45chr16

15609162

+
Frame-shiftENST00000346370ENST00000300006ABCC1chr16

16043656

+C16orf45chr16

15609161

+
Frame-shiftENST00000346370ENST00000300006ABCC1chr16

16043656

+C16orf45chr16

15661840

+
Frame-shiftENST00000346370ENST00000452191ABCC1chr16

16043656

+C16orf45chr16

15609162

+
Frame-shiftENST00000346370ENST00000452191ABCC1chr16

16043656

+C16orf45chr16

15609161

+
Frame-shiftENST00000346370ENST00000452191ABCC1chr16

16043656

+C16orf45chr16

15661840

+
Frame-shiftENST00000346370ENST00000561692ABCC1chr16

16043656

+C16orf45chr16

15661840

+
Frame-shiftENST00000346370ENST00000566490ABCC1chr16

16043656

+C16orf45chr16

15609162

+
Frame-shiftENST00000346370ENST00000566490ABCC1chr16

16043656

+C16orf45chr16

15609161

+
Frame-shiftENST00000346370ENST00000566490ABCC1chr16

16043656

+C16orf45chr16

15661840

+
Frame-shiftENST00000349029ENST00000300006ABCC1chr16

16043656

+C16orf45chr16

15609162

+
Frame-shiftENST00000349029ENST00000300006ABCC1chr16

16043656

+C16orf45chr16

15609161

+
Frame-shiftENST00000349029ENST00000300006ABCC1chr16

16043656

+C16orf45chr16

15661840

+
Frame-shiftENST00000349029ENST00000452191ABCC1chr16

16043656

+C16orf45chr16

15609162

+
Frame-shiftENST00000349029ENST00000452191ABCC1chr16

16043656

+C16orf45chr16

15609161

+
Frame-shiftENST00000349029ENST00000452191ABCC1chr16

16043656

+C16orf45chr16

15661840

+
Frame-shiftENST00000349029ENST00000561692ABCC1chr16

16043656

+C16orf45chr16

15661840

+
Frame-shiftENST00000349029ENST00000566490ABCC1chr16

16043656

+C16orf45chr16

15609162

+
Frame-shiftENST00000349029ENST00000566490ABCC1chr16

16043656

+C16orf45chr16

15609161

+
Frame-shiftENST00000349029ENST00000566490ABCC1chr16

16043656

+C16orf45chr16

15661840

+
Frame-shiftENST00000351154ENST00000300006ABCC1chr16

16043656

+C16orf45chr16

15609162

+
Frame-shiftENST00000351154ENST00000300006ABCC1chr16

16043656

+C16orf45chr16

15609161

+
Frame-shiftENST00000351154ENST00000300006ABCC1chr16

16043656

+C16orf45chr16

15661840

+
Frame-shiftENST00000351154ENST00000452191ABCC1chr16

16043656

+C16orf45chr16

15609162

+
Frame-shiftENST00000351154ENST00000452191ABCC1chr16

16043656

+C16orf45chr16

15609161

+
Frame-shiftENST00000351154ENST00000452191ABCC1chr16

16043656

+C16orf45chr16

15661840

+
Frame-shiftENST00000351154ENST00000561692ABCC1chr16

16043656

+C16orf45chr16

15661840

+
Frame-shiftENST00000351154ENST00000566490ABCC1chr16

16043656

+C16orf45chr16

15609162

+
Frame-shiftENST00000351154ENST00000566490ABCC1chr16

16043656

+C16orf45chr16

15609161

+
Frame-shiftENST00000351154ENST00000566490ABCC1chr16

16043656

+C16orf45chr16

15661840

+
Frame-shiftENST00000399408ENST00000300006ABCC1chr16

16043656

+C16orf45chr16

15609162

+
Frame-shiftENST00000399408ENST00000300006ABCC1chr16

16043656

+C16orf45chr16

15609161

+
Frame-shiftENST00000399408ENST00000300006ABCC1chr16

16043656

+C16orf45chr16

15661840

+
Frame-shiftENST00000399408ENST00000452191ABCC1chr16

16043656

+C16orf45chr16

15609162

+
Frame-shiftENST00000399408ENST00000452191ABCC1chr16

16043656

+C16orf45chr16

15609161

+
Frame-shiftENST00000399408ENST00000452191ABCC1chr16

16043656

+C16orf45chr16

15661840

+
Frame-shiftENST00000399408ENST00000561692ABCC1chr16

16043656

+C16orf45chr16

15661840

+
Frame-shiftENST00000399408ENST00000566490ABCC1chr16

16043656

+C16orf45chr16

15609162

+
Frame-shiftENST00000399408ENST00000566490ABCC1chr16

16043656

+C16orf45chr16

15609161

+
Frame-shiftENST00000399408ENST00000566490ABCC1chr16

16043656

+C16orf45chr16

15661840

+
Frame-shiftENST00000399410ENST00000300006ABCC1chr16

16043656

+C16orf45chr16

15609162

+
Frame-shiftENST00000399410ENST00000300006ABCC1chr16

16043656

+C16orf45chr16

15609161

+
Frame-shiftENST00000399410ENST00000300006ABCC1chr16

16043656

+C16orf45chr16

15661840

+
Frame-shiftENST00000399410ENST00000452191ABCC1chr16

16043656

+C16orf45chr16

15609162

+
Frame-shiftENST00000399410ENST00000452191ABCC1chr16

16043656

+C16orf45chr16

15609161

+
Frame-shiftENST00000399410ENST00000452191ABCC1chr16

16043656

+C16orf45chr16

15661840

+
Frame-shiftENST00000399410ENST00000561692ABCC1chr16

16043656

+C16orf45chr16

15661840

+
Frame-shiftENST00000399410ENST00000566490ABCC1chr16

16043656

+C16orf45chr16

15609162

+
Frame-shiftENST00000399410ENST00000566490ABCC1chr16

16043656

+C16orf45chr16

15609161

+
Frame-shiftENST00000399410ENST00000566490ABCC1chr16

16043656

+C16orf45chr16

15661840

+
intron-3CDSENST00000576557ENST00000300006ABCC1chr16

16043656

+C16orf45chr16

15609162

+
intron-3CDSENST00000576557ENST00000300006ABCC1chr16

16043656

+C16orf45chr16

15609161

+
intron-3CDSENST00000576557ENST00000300006ABCC1chr16

16043656

+C16orf45chr16

15661840

+
intron-3CDSENST00000576557ENST00000452191ABCC1chr16

16043656

+C16orf45chr16

15609162

+
intron-3CDSENST00000576557ENST00000452191ABCC1chr16

16043656

+C16orf45chr16

15609161

+
intron-3CDSENST00000576557ENST00000452191ABCC1chr16

16043656

+C16orf45chr16

15661840

+
intron-3CDSENST00000576557ENST00000561692ABCC1chr16

16043656

+C16orf45chr16

15661840

+
intron-3CDSENST00000576557ENST00000566490ABCC1chr16

16043656

+C16orf45chr16

15609162

+
intron-3CDSENST00000576557ENST00000566490ABCC1chr16

16043656

+C16orf45chr16

15609161

+
intron-3CDSENST00000576557ENST00000566490ABCC1chr16

16043656

+C16orf45chr16

15661840

+
intron-intronENST00000576557ENST00000561692ABCC1chr16

16043656

+C16orf45chr16

15609162

+
intron-intronENST00000576557ENST00000561692ABCC1chr16

16043656

+C16orf45chr16

15609161

+
intron-intronENST00000576557ENST00000565913ABCC1chr16

16043656

+C16orf45chr16

15609162

+
intron-intronENST00000576557ENST00000565913ABCC1chr16

16043656

+C16orf45chr16

15609161

+
intron-intronENST00000576557ENST00000565913ABCC1chr16

16043656

+C16orf45chr16

15661840

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for ABCC1-C16orf45


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
ABCC1chr1616043656+C16orf45chr1615609161+1.55E-131
ABCC1chr1616043656+C16orf45chr1615609161+1.55E-131
ABCC1chr1616043656+C16orf45chr1615661839+1.74E-161
ABCC1chr1616043656+C16orf45chr1615609161+1.55E-131
ABCC1chr1616043656+C16orf45chr1615609161+1.55E-131
ABCC1chr1616043656+C16orf45chr1615661839+1.74E-161


check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

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Fusion Protein Features for ABCC1-C16orf45


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:16043656/:15609161)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for ABCC1-C16orf45


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for ABCC1-C16orf45


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for ABCC1-C16orf45


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for ABCC1-C16orf45


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneABCC1C0006142Malignant neoplasm of breast1CTD_human
HgeneABCC1C0009402Colorectal Carcinoma1CTD_human
HgeneABCC1C0009404Colorectal Neoplasms1CTD_human
HgeneABCC1C0013221Drug toxicity1CTD_human
HgeneABCC1C0018799Heart Diseases1CTD_human
HgeneABCC1C0019193Hepatitis, Toxic1CTD_human
HgeneABCC1C0020538Hypertensive disease1CTD_human
HgeneABCC1C0041755Adverse reaction to drug1CTD_human
HgeneABCC1C0235874Disease Exacerbation1CTD_human
HgeneABCC1C0678222Breast Carcinoma1CTD_human
HgeneABCC1C0860207Drug-Induced Liver Disease1CTD_human
HgeneABCC1C1168401Squamous cell carcinoma of the head and neck1CTD_human
HgeneABCC1C1257931Mammary Neoplasms, Human1CTD_human
HgeneABCC1C1262760Hepatitis, Drug-Induced1CTD_human
HgeneABCC1C1458155Mammary Neoplasms1CTD_human
HgeneABCC1C3658290Drug-Induced Acute Liver Injury1CTD_human
HgeneABCC1C4277682Chemical and Drug Induced Liver Injury1CTD_human
HgeneABCC1C4279912Chemically-Induced Liver Toxicity1CTD_human
HgeneABCC1C4704874Mammary Carcinoma, Human1CTD_human
HgeneABCC1C4721453Peripheral Nervous System Diseases1CTD_human