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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:ACO1-TYRP1 (FusionGDB2 ID:HG48TG7306)

Fusion Gene Summary for ACO1-TYRP1

check button Fusion gene summary
Fusion gene informationFusion gene name: ACO1-TYRP1
Fusion gene ID: hg48tg7306
HgeneTgene
Gene symbol

ACO1

TYRP1

Gene ID

48

7306

Gene nameaconitase 1tyrosinase related protein 1
SynonymsACONS|HEL60|IREB1|IREBP|IREBP1|IRP1CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN
Cytomap('ACO1')('TYRP1')

9p21.1

9p23

Type of geneprotein-codingprotein-coding
Descriptioncytoplasmic aconitate hydrataseaconitase 1, solubleaconitate hydratase, cytoplasmiccitrate hydro-lyasecytoplasmic aconitasecytosplasmic aconitaseepididymis luminal protein 60epididymis secretory sperm binding proteinferritin repressor proteiniron5,6-dihydroxyindole-2-carboxylic acid oxidaseDHICA oxidasecatalase Bglycoprotein 75melanoma antigen gp75
Modification date2020031320200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000309951, ENST00000379923, 
ENST00000541043, 
Fusion gene scores* DoF score4 X 4 X 4=645 X 2 X 3=30
# samples 66
** MAII scorelog2(6/64*10)=-0.0931094043914815
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(6/30*10)=1
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
Context

PubMed: ACO1 [Title/Abstract] AND TYRP1 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointACO1(32384733)-TYRP1(12693912), # samples:3
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneACO1

GO:0006101

citrate metabolic process

8041788|16527810

HgeneACO1

GO:0010040

response to iron(II) ion

8041788



check button Fusion gene information
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4BRCATCGA-OL-A5RY-01AACO1chr9

32384733

-TYRP1chr9

12693912

+
ChimerDB4BRCATCGA-OL-A5RY-01AACO1chr9

32384733

+TYRP1chr9

12693912

+
ChimerDB4BRCATCGA-OL-A5RYACO1chr9

32384733

+TYRP1chr9

12693911

+


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Fusion Gene ORF analysis for ACO1-TYRP1

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5UTR-5UTRENST00000309951ENST00000381137ACO1chr9

32384733

+TYRP1chr9

12693912

+
5UTR-5UTRENST00000309951ENST00000381137ACO1chr9

32384733

+TYRP1chr9

12693911

+
5UTR-5UTRENST00000309951ENST00000388918ACO1chr9

32384733

+TYRP1chr9

12693912

+
5UTR-5UTRENST00000309951ENST00000388918ACO1chr9

32384733

+TYRP1chr9

12693911

+
5UTR-5UTRENST00000379923ENST00000381137ACO1chr9

32384733

+TYRP1chr9

12693912

+
5UTR-5UTRENST00000379923ENST00000381137ACO1chr9

32384733

+TYRP1chr9

12693911

+
5UTR-5UTRENST00000379923ENST00000388918ACO1chr9

32384733

+TYRP1chr9

12693912

+
5UTR-5UTRENST00000379923ENST00000388918ACO1chr9

32384733

+TYRP1chr9

12693911

+
5UTR-5UTRENST00000541043ENST00000381137ACO1chr9

32384733

+TYRP1chr9

12693912

+
5UTR-5UTRENST00000541043ENST00000381137ACO1chr9

32384733

+TYRP1chr9

12693911

+
5UTR-5UTRENST00000541043ENST00000388918ACO1chr9

32384733

+TYRP1chr9

12693912

+
5UTR-5UTRENST00000541043ENST00000388918ACO1chr9

32384733

+TYRP1chr9

12693911

+
5UTR-intronENST00000309951ENST00000381136ACO1chr9

32384733

+TYRP1chr9

12693912

+
5UTR-intronENST00000309951ENST00000381136ACO1chr9

32384733

+TYRP1chr9

12693911

+
5UTR-intronENST00000309951ENST00000473504ACO1chr9

32384733

+TYRP1chr9

12693912

+
5UTR-intronENST00000309951ENST00000473504ACO1chr9

32384733

+TYRP1chr9

12693911

+
5UTR-intronENST00000379923ENST00000381136ACO1chr9

32384733

+TYRP1chr9

12693912

+
5UTR-intronENST00000379923ENST00000381136ACO1chr9

32384733

+TYRP1chr9

12693911

+
5UTR-intronENST00000379923ENST00000473504ACO1chr9

32384733

+TYRP1chr9

12693912

+
5UTR-intronENST00000379923ENST00000473504ACO1chr9

32384733

+TYRP1chr9

12693911

+
5UTR-intronENST00000541043ENST00000381136ACO1chr9

32384733

+TYRP1chr9

12693912

+
5UTR-intronENST00000541043ENST00000381136ACO1chr9

32384733

+TYRP1chr9

12693911

+
5UTR-intronENST00000541043ENST00000473504ACO1chr9

32384733

+TYRP1chr9

12693912

+
5UTR-intronENST00000541043ENST00000473504ACO1chr9

32384733

+TYRP1chr9

12693911

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for ACO1-TYRP1


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
ACO1chr932384733+TYRP1chr912693911+0.0003776120.99962234
ACO1chr932384733+TYRP1chr912693911+0.0003776120.99962234
ACO1chr932384733+TYRP1chr912693911+0.0003776120.99962234
ACO1chr932384733+TYRP1chr912693911+0.0003776120.99962234


check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

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Fusion Protein Features for ACO1-TYRP1


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:32384733/:12693912)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for ACO1-TYRP1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for ACO1-TYRP1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for ACO1-TYRP1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for ACO1-TYRP1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneACO1C0027626Neoplasm Invasiveness1CTD_human
HgeneACO1C0029408Degenerative polyarthritis1CTD_human
HgeneACO1C0086743Osteoarthrosis Deformans1CTD_human
TgeneC0342683ALBINISM, OCULOCUTANEOUS, TYPE III4GENOMICS_ENGLAND;ORPHANET;UNIPROT
TgeneC0001418Adenocarcinoma1CTD_human
TgeneC0015397Disorder of eye1GENOMICS_ENGLAND
TgeneC0024121Lung Neoplasms1CTD_human
TgeneC0025202melanoma1CTD_human
TgeneC0078918Albinism, Oculocutaneous1GENOMICS_ENGLAND
TgeneC0205641Adenocarcinoma, Basal Cell1CTD_human
TgeneC0205642Adenocarcinoma, Oxyphilic1CTD_human
TgeneC0205643Carcinoma, Cribriform1CTD_human
TgeneC0205644Carcinoma, Granular Cell1CTD_human
TgeneC0205645Adenocarcinoma, Tubular1CTD_human
TgeneC0242379Malignant neoplasm of lung1CTD_human
TgeneC2677086Skin-Hair-Eye Pigmentation, Variation In, 111GENOMICS_ENGLAND