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![]() | Fusion Gene Summary |
![]() | Fusion Gene ORF analysis |
![]() | Fusion Genomic Features |
![]() | Fusion Protein Features |
![]() | Fusion Gene Sequence |
![]() | Fusion Gene PPI analysis |
![]() | Related Drugs |
![]() | Related Diseases |
Fusion gene:NTRK3-CAMTA1 (FusionGDB2 ID:HG4916TG23261) |
Fusion Gene Summary for NTRK3-CAMTA1 |
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Fusion gene information | Fusion gene name: NTRK3-CAMTA1 | Fusion gene ID: hg4916tg23261 | Hgene | Tgene | Gene symbol | NTRK3 | CAMTA1 | Gene ID | 4916 | 23261 |
Gene name | neurotrophic receptor tyrosine kinase 3 | calmodulin binding transcription activator 1 | |
Synonyms | GP145-TrkC|TRKC|gp145(trkC) | CANPMR | |
Cytomap | ('NTRK3')('CAMTA1') 15q25.3 | 1p36.31-p36.23 | |
Type of gene | protein-coding | protein-coding | |
Description | NT-3 growth factor receptorETS related protein-neurotrophic receptor tyrosine kinase fusion proteinETV6-NTRK3 fusionneurotrophic tyrosine kinase, receptor, type 3tyrosine kinase receptor C | calmodulin-binding transcription activator 1 | |
Modification date | 20200313 | 20200315 | |
UniProtAcc | Q16288 | . | |
Ensembl transtripts involved in fusion gene | ENST00000317501, ENST00000355254, ENST00000357724, ENST00000360948, ENST00000394480, ENST00000540489, ENST00000542733, ENST00000557856, ENST00000558676, ENST00000558306, | ||
Fusion gene scores | * DoF score | 12 X 15 X 5=900 | 21 X 19 X 8=3192 |
# samples | 17 | 24 | |
** MAII score | log2(17/900*10)=-2.40439025507934 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(24/3192*10)=-3.73335434061383 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: NTRK3 [Title/Abstract] AND CAMTA1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | NTRK3(88576088)-CAMTA1(6947714), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | NTRK3 | GO:0000187 | activation of MAPK activity | 23027130 |
Hgene | NTRK3 | GO:0001933 | negative regulation of protein phosphorylation | 23027130 |
Hgene | NTRK3 | GO:0007169 | transmembrane receptor protein tyrosine kinase signaling pathway | 23027130 |
Hgene | NTRK3 | GO:0008284 | positive regulation of cell proliferation | 23027130 |
Hgene | NTRK3 | GO:0010628 | positive regulation of gene expression | 23027130 |
Hgene | NTRK3 | GO:0030335 | positive regulation of cell migration | 23027130 |
Hgene | NTRK3 | GO:0032148 | activation of protein kinase B activity | 23027130 |
Hgene | NTRK3 | GO:0033138 | positive regulation of peptidyl-serine phosphorylation | 23027130 |
Hgene | NTRK3 | GO:0050927 | positive regulation of positive chemotaxis | 23027130 |
Hgene | NTRK3 | GO:0090630 | activation of GTPase activity | 23027130 |
Hgene | NTRK3 | GO:2000251 | positive regulation of actin cytoskeleton reorganization | 23027130 |
![]() * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | GBM | TCGA-27-2526-01A | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
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Fusion Gene ORF analysis for NTRK3-CAMTA1 |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-3UTR | ENST00000317501 | ENST00000476163 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-3UTR | ENST00000317501 | ENST00000557126 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-3UTR | ENST00000355254 | ENST00000476163 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-3UTR | ENST00000355254 | ENST00000557126 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-3UTR | ENST00000357724 | ENST00000476163 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-3UTR | ENST00000357724 | ENST00000557126 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-3UTR | ENST00000360948 | ENST00000476163 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-3UTR | ENST00000360948 | ENST00000557126 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-3UTR | ENST00000394480 | ENST00000476163 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-3UTR | ENST00000394480 | ENST00000557126 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-3UTR | ENST00000540489 | ENST00000476163 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-3UTR | ENST00000540489 | ENST00000557126 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-3UTR | ENST00000542733 | ENST00000476163 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-3UTR | ENST00000542733 | ENST00000557126 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-3UTR | ENST00000557856 | ENST00000476163 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-3UTR | ENST00000557856 | ENST00000557126 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-3UTR | ENST00000558676 | ENST00000476163 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-3UTR | ENST00000558676 | ENST00000557126 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000317501 | ENST00000303635 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000317501 | ENST00000439411 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000317501 | ENST00000467404 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000317501 | ENST00000473578 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000317501 | ENST00000476864 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000355254 | ENST00000303635 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000355254 | ENST00000439411 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000355254 | ENST00000467404 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000355254 | ENST00000473578 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000355254 | ENST00000476864 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000357724 | ENST00000303635 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000357724 | ENST00000439411 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000357724 | ENST00000467404 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000357724 | ENST00000473578 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000357724 | ENST00000476864 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000360948 | ENST00000303635 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000360948 | ENST00000439411 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000360948 | ENST00000467404 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000360948 | ENST00000473578 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000360948 | ENST00000476864 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000394480 | ENST00000303635 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000394480 | ENST00000439411 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000394480 | ENST00000467404 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000394480 | ENST00000473578 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000394480 | ENST00000476864 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000540489 | ENST00000303635 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000540489 | ENST00000439411 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000540489 | ENST00000467404 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000540489 | ENST00000473578 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000540489 | ENST00000476864 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000542733 | ENST00000303635 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000542733 | ENST00000439411 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000542733 | ENST00000467404 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000542733 | ENST00000473578 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000542733 | ENST00000476864 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000557856 | ENST00000303635 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000557856 | ENST00000439411 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000557856 | ENST00000467404 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000557856 | ENST00000473578 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000557856 | ENST00000476864 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000558676 | ENST00000303635 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000558676 | ENST00000439411 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000558676 | ENST00000467404 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000558676 | ENST00000473578 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5CDS-intron | ENST00000558676 | ENST00000476864 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5UTR-3UTR | ENST00000558306 | ENST00000476163 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5UTR-3UTR | ENST00000558306 | ENST00000557126 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5UTR-intron | ENST00000558306 | ENST00000303635 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5UTR-intron | ENST00000558306 | ENST00000439411 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5UTR-intron | ENST00000558306 | ENST00000467404 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5UTR-intron | ENST00000558306 | ENST00000473578 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
5UTR-intron | ENST00000558306 | ENST00000476864 | NTRK3 | chr15 | 88576088 | - | CAMTA1 | chr1 | 6947714 | + |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
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Fusion Genomic Features for NTRK3-CAMTA1 |
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Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
NTRK3 | chr15 | 88576087 | - | CAMTA1 | chr1 | 6947713 | + | 0.94719875 | 0.052801274 |
NTRK3 | chr15 | 88576087 | - | CAMTA1 | chr1 | 6947713 | + | 0.94719875 | 0.052801274 |
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Fusion Protein Features for NTRK3-CAMTA1 |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:88576088/:6947714) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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Hgene | Tgene |
NTRK3 | . |
FUNCTION: Receptor tyrosine kinase involved in nervous system and probably heart development. Upon binding of its ligand NTF3/neurotrophin-3, NTRK3 autophosphorylates and activates different signaling pathways, including the phosphatidylinositol 3-kinase/AKT and the MAPK pathways, that control cell survival and differentiation. {ECO:0000269|PubMed:25196463}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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Fusion Gene Sequence for NTRK3-CAMTA1 |
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Fusion Gene PPI Analysis for NTRK3-CAMTA1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for NTRK3-CAMTA1 |
![]() (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Hgene | NTRK3 | Q16288 | DB11986 | Entrectinib | Inhibitor | Small molecule | Approved|Investigational |
Hgene | NTRK3 | Q16288 | DB11986 | Entrectinib | Inhibitor | Small molecule | Approved|Investigational |
Hgene | NTRK3 | Q16288 | DB12010 | Fostamatinib | Inhibitor | Small molecule | Approved|Investigational |
Hgene | NTRK3 | Q16288 | DB12010 | Fostamatinib | Inhibitor | Small molecule | Approved|Investigational |
Hgene | NTRK3 | Q16288 | DB14723 | Larotrectinib | Inhibitor | Small molecule | Approved|Investigational |
Hgene | NTRK3 | Q16288 | DB14723 | Larotrectinib | Inhibitor | Small molecule | Approved|Investigational |
Hgene | NTRK3 | Q16288 | DB15822 | Pralsetinib | Inhibitor | Small molecule | Approved|Investigational |
Hgene | NTRK3 | Q16288 | DB15822 | Pralsetinib | Inhibitor | Small molecule | Approved|Investigational |
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Related Diseases for NTRK3-CAMTA1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | NTRK3 | C0036341 | Schizophrenia | 3 | PSYGENET |
Hgene | NTRK3 | C0041696 | Unipolar Depression | 2 | PSYGENET |
Hgene | NTRK3 | C1269683 | Major Depressive Disorder | 2 | PSYGENET |
Hgene | NTRK3 | C1332965 | Congenital Mesoblastic Nephroma | 2 | ORPHANET |
Hgene | NTRK3 | C0014175 | Endometriosis | 1 | CTD_human |
Hgene | NTRK3 | C0017638 | Glioma | 1 | CTD_human |
Hgene | NTRK3 | C0019569 | Hirschsprung Disease | 1 | GENOMICS_ENGLAND |
Hgene | NTRK3 | C0023467 | Leukemia, Myelocytic, Acute | 1 | CTD_human |
Hgene | NTRK3 | C0026998 | Acute Myeloid Leukemia, M1 | 1 | CTD_human |
Hgene | NTRK3 | C0038220 | Status Epilepticus | 1 | CTD_human |
Hgene | NTRK3 | C0238463 | Papillary thyroid carcinoma | 1 | ORPHANET |
Hgene | NTRK3 | C0259783 | mixed gliomas | 1 | CTD_human |
Hgene | NTRK3 | C0269102 | Endometrioma | 1 | CTD_human |
Hgene | NTRK3 | C0270823 | Petit mal status | 1 | CTD_human |
Hgene | NTRK3 | C0311335 | Grand Mal Status Epilepticus | 1 | CTD_human |
Hgene | NTRK3 | C0393734 | Complex Partial Status Epilepticus | 1 | CTD_human |
Hgene | NTRK3 | C0525045 | Mood Disorders | 1 | PSYGENET |
Hgene | NTRK3 | C0555198 | Malignant Glioma | 1 | CTD_human |
Hgene | NTRK3 | C0751522 | Status Epilepticus, Subclinical | 1 | CTD_human |
Hgene | NTRK3 | C0751523 | Non-Convulsive Status Epilepticus | 1 | CTD_human |
Hgene | NTRK3 | C0751524 | Simple Partial Status Epilepticus | 1 | CTD_human |
Hgene | NTRK3 | C1879321 | Acute Myeloid Leukemia (AML-M2) | 1 | CTD_human |
Tgene | C0206732 | Epithelioid hemangioendothelioma | 1 | ORPHANET | |
Tgene | C3553661 | CEREBELLAR ATAXIA, NONPROGRESSIVE, WITH MENTAL RETARDATION | 1 | CTD_human;GENOMICS_ENGLAND;ORPHANET |