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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:COPS7A-ZDHHC11 (FusionGDB2 ID:HG50813TG79844)

Fusion Gene Summary for COPS7A-ZDHHC11

check button Fusion gene summary
Fusion gene informationFusion gene name: COPS7A-ZDHHC11
Fusion gene ID: hg50813tg79844
HgeneTgene
Gene symbol

COPS7A

ZDHHC11

Gene ID

50813

79844

Gene nameCOP9 signalosome subunit 7Azinc finger DHHC-type containing 11
SynonymsCSN7|CSN7A|SGN7aZNF399
Cytomap('COPS7A')('ZDHHC11')

12p13.31

5p15.33

Type of geneprotein-codingprotein-coding
DescriptionCOP9 signalosome complex subunit 7aCOP9 complex subunit 7aCOP9 constitutive photomorphogenic homolog subunit 7AJAB1-containing signalosome subunit 7adermal papilla-derived protein 10probable palmitoyltransferase ZDHHC11DHHC-11zinc finger DHHC domain-containing protein 11zinc finger protein 399zinc finger, DHHC domain containing 11
Modification date2020031320200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000542150, ENST00000229251, 
ENST00000534877, ENST00000534947, 
ENST00000538410, ENST00000539735, 
ENST00000543155, 
Fusion gene scores* DoF score8 X 5 X 6=2405 X 3 X 6=90
# samples 77
** MAII scorelog2(7/240*10)=-1.77760757866355
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(7/90*10)=-0.362570079384708
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: COPS7A [Title/Abstract] AND ZDHHC11 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointCOPS7A(6838615)-ZDHHC11(801279), # samples:1
Anticipated loss of major functional domain due to fusion event.COPS7A-ZDHHC11 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneCOPS7A

GO:0000338

protein deneddylation

19141280



check button Fusion gene information
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4KICHTCGA-KL-8341-01ACOPS7Achr12

6838615

+ZDHHC11chr5

801279

-


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Fusion Gene ORF analysis for COPS7A-ZDHHC11

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
3UTR-3CDSENST00000542150ENST00000424784COPS7Achr12

6838615

+ZDHHC11chr5

801279

-
3UTR-5UTRENST00000542150ENST00000283441COPS7Achr12

6838615

+ZDHHC11chr5

801279

-
3UTR-5UTRENST00000542150ENST00000503758COPS7Achr12

6838615

+ZDHHC11chr5

801279

-
3UTR-intronENST00000542150ENST00000511539COPS7Achr12

6838615

+ZDHHC11chr5

801279

-
5CDS-5UTRENST00000229251ENST00000283441COPS7Achr12

6838615

+ZDHHC11chr5

801279

-
5CDS-5UTRENST00000229251ENST00000503758COPS7Achr12

6838615

+ZDHHC11chr5

801279

-
5CDS-5UTRENST00000534877ENST00000283441COPS7Achr12

6838615

+ZDHHC11chr5

801279

-
5CDS-5UTRENST00000534877ENST00000503758COPS7Achr12

6838615

+ZDHHC11chr5

801279

-
5CDS-5UTRENST00000534947ENST00000283441COPS7Achr12

6838615

+ZDHHC11chr5

801279

-
5CDS-5UTRENST00000534947ENST00000503758COPS7Achr12

6838615

+ZDHHC11chr5

801279

-
5CDS-5UTRENST00000538410ENST00000283441COPS7Achr12

6838615

+ZDHHC11chr5

801279

-
5CDS-5UTRENST00000538410ENST00000503758COPS7Achr12

6838615

+ZDHHC11chr5

801279

-
5CDS-5UTRENST00000539735ENST00000283441COPS7Achr12

6838615

+ZDHHC11chr5

801279

-
5CDS-5UTRENST00000539735ENST00000503758COPS7Achr12

6838615

+ZDHHC11chr5

801279

-
5CDS-5UTRENST00000543155ENST00000283441COPS7Achr12

6838615

+ZDHHC11chr5

801279

-
5CDS-5UTRENST00000543155ENST00000503758COPS7Achr12

6838615

+ZDHHC11chr5

801279

-
5CDS-intronENST00000229251ENST00000511539COPS7Achr12

6838615

+ZDHHC11chr5

801279

-
5CDS-intronENST00000534877ENST00000511539COPS7Achr12

6838615

+ZDHHC11chr5

801279

-
5CDS-intronENST00000534947ENST00000511539COPS7Achr12

6838615

+ZDHHC11chr5

801279

-
5CDS-intronENST00000538410ENST00000511539COPS7Achr12

6838615

+ZDHHC11chr5

801279

-
5CDS-intronENST00000539735ENST00000511539COPS7Achr12

6838615

+ZDHHC11chr5

801279

-
5CDS-intronENST00000543155ENST00000511539COPS7Achr12

6838615

+ZDHHC11chr5

801279

-
Frame-shiftENST00000229251ENST00000424784COPS7Achr12

6838615

+ZDHHC11chr5

801279

-
Frame-shiftENST00000534877ENST00000424784COPS7Achr12

6838615

+ZDHHC11chr5

801279

-
Frame-shiftENST00000534947ENST00000424784COPS7Achr12

6838615

+ZDHHC11chr5

801279

-
Frame-shiftENST00000538410ENST00000424784COPS7Achr12

6838615

+ZDHHC11chr5

801279

-
Frame-shiftENST00000539735ENST00000424784COPS7Achr12

6838615

+ZDHHC11chr5

801279

-
Frame-shiftENST00000543155ENST00000424784COPS7Achr12

6838615

+ZDHHC11chr5

801279

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for COPS7A-ZDHHC11


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)


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Fusion Protein Features for COPS7A-ZDHHC11


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:6838615/:801279)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for COPS7A-ZDHHC11


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for COPS7A-ZDHHC11


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for COPS7A-ZDHHC11


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for COPS7A-ZDHHC11


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneCOPS7AC0024623Malignant neoplasm of stomach1CTD_human
HgeneCOPS7AC0038356Stomach Neoplasms1CTD_human
HgeneCOPS7AC0235874Disease Exacerbation1CTD_human
HgeneCOPS7AC1708349Hereditary Diffuse Gastric Cancer1CTD_human