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 | Fusion Gene Summary |
| Fusion Gene ORF analysis |
| Fusion Genomic Features |
| Fusion Protein Features |
| Fusion Gene Sequence |
| Fusion Gene PPI analysis |
| Related Drugs |
| Related Diseases |
Fusion gene:HDAC7-CHUK (FusionGDB2 ID:HG51564TG1147) |
Fusion Gene Summary for HDAC7-CHUK |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: HDAC7-CHUK | Fusion gene ID: hg51564tg1147 | Hgene | Tgene | Gene symbol | HDAC7 | CHUK | Gene ID | 51564 | 1147 |
| Gene name | histone deacetylase 7 | component of inhibitor of nuclear factor kappa B kinase complex | |
| Synonyms | HD7|HD7A|HDAC7A | IKBKA|IKK-alpha|IKK1|IKKA|NFKBIKA|TCF16 | |
| Cytomap | ('HDAC7')('CHUK') 12q13.11 | 10q24.31 | |
| Type of gene | protein-coding | protein-coding | |
| Description | histone deacetylase 7histone deacetylase 7A | inhibitor of nuclear factor kappa-B kinase subunit alphaI-kappa-B kinase 1I-kappa-B kinase-alphaIKK-a kinaseIkB kinase alpha subunitNuclear factor NFkappaB inhibitor kinase alphaTCF-16conserved helix-loop-helix ubiquitous kinasetranscription facto | |
| Modification date | 20200327 | 20200327 | |
| UniProtAcc | . | . | |
| Ensembl transtripts involved in fusion gene | ENST00000080059, ENST00000354334, ENST00000552960, ENST00000380610, ENST00000427332, ENST00000488927, | ||
| Fusion gene scores | * DoF score | 11 X 8 X 6=528 | 1 X 1 X 1=1 |
| # samples | 15 | 1 | |
| ** MAII score | log2(15/528*10)=-1.81557542886257 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(1/1*10)=3.32192809488736 | |
| Context | PubMed: HDAC7 [Title/Abstract] AND CHUK [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint | HDAC7(48213550)-CHUK(101969547), # samples:1 | ||
| Anticipated loss of major functional domain due to fusion event. | HDAC7-CHUK seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. HDAC7-CHUK seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. HDAC7-CHUK seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. HDAC7-CHUK seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. | ||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | HDAC7 | GO:0032703 | negative regulation of interleukin-2 production | 17360565 |
| Tgene | CHUK | GO:0006468 | protein phosphorylation | 20434986 |
| Tgene | CHUK | GO:0045944 | positive regulation of transcription by RNA polymerase II | 23091055 |
| Tgene | CHUK | GO:0071356 | cellular response to tumor necrosis factor | 23091055 |
| Fusion gene breakpoints across HDAC7 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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| Fusion gene breakpoints across CHUK (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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| Fusion gene information * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
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Fusion Gene ORF analysis for HDAC7-CHUK |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
| ENST00000080059 | ENST00000370397 | HDAC7 | chr12 | 48213550 | - | CHUK | chr10 | 101969547 | - | 0.000208736 | 0.9997913 |
| ENST00000354334 | ENST00000370397 | HDAC7 | chr12 | 48213550 | - | CHUK | chr10 | 101969547 | - | 0.000199119 | 0.99980086 |
| ENST00000552960 | ENST00000370397 | HDAC7 | chr12 | 48213550 | - | CHUK | chr10 | 101969547 | - | 0.000204617 | 0.9997954 |
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Fusion Genomic Features for HDAC7-CHUK |
| FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
| Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
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Fusion Protein Features for HDAC7-CHUK |
| Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr12:48213550/chr10:101969547) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| . | . |
| FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | CHUK | chr12:48213550 | chr10:101969547 | ENST00000370397 | 8 | 21 | 455_476 | 311 | 746.0 | Region | Note=Leucine-zipper | |
| Tgene | CHUK | chr12:48213550 | chr10:101969547 | ENST00000370397 | 8 | 21 | 738_743 | 311 | 746.0 | Region | Note=NEMO-binding |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000080059 | - | 1 | 26 | 197_203 | 6 | 992.0 | Compositional bias | Note=Poly-Ser |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000080059 | - | 1 | 26 | 368_373 | 6 | 992.0 | Compositional bias | Note=Poly-Pro |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000354334 | - | 1 | 25 | 197_203 | 6 | 955.0 | Compositional bias | Note=Poly-Ser |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000354334 | - | 1 | 25 | 368_373 | 6 | 955.0 | Compositional bias | Note=Poly-Pro |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000427332 | - | 1 | 26 | 197_203 | 0 | 953.0 | Compositional bias | Note=Poly-Ser |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000427332 | - | 1 | 26 | 368_373 | 0 | 953.0 | Compositional bias | Note=Poly-Pro |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000552960 | - | 1 | 25 | 197_203 | 6 | 975.0 | Compositional bias | Note=Poly-Ser |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000552960 | - | 1 | 25 | 368_373 | 6 | 975.0 | Compositional bias | Note=Poly-Pro |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000080059 | - | 1 | 26 | 918_952 | 6 | 992.0 | Motif | Nuclear export signal |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000354334 | - | 1 | 25 | 918_952 | 6 | 955.0 | Motif | Nuclear export signal |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000427332 | - | 1 | 26 | 918_952 | 0 | 953.0 | Motif | Nuclear export signal |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000552960 | - | 1 | 25 | 918_952 | 6 | 975.0 | Motif | Nuclear export signal |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000080059 | - | 1 | 26 | 1_268 | 6 | 992.0 | Region | Transcription repression 1 |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000080059 | - | 1 | 26 | 218_546 | 6 | 992.0 | Region | Transcription repression 2 |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000080059 | - | 1 | 26 | 518_865 | 6 | 992.0 | Region | Note=Histone deacetylase |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000354334 | - | 1 | 25 | 1_268 | 6 | 955.0 | Region | Transcription repression 1 |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000354334 | - | 1 | 25 | 218_546 | 6 | 955.0 | Region | Transcription repression 2 |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000354334 | - | 1 | 25 | 518_865 | 6 | 955.0 | Region | Note=Histone deacetylase |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000427332 | - | 1 | 26 | 1_268 | 0 | 953.0 | Region | Transcription repression 1 |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000427332 | - | 1 | 26 | 218_546 | 0 | 953.0 | Region | Transcription repression 2 |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000427332 | - | 1 | 26 | 518_865 | 0 | 953.0 | Region | Note=Histone deacetylase |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000552960 | - | 1 | 25 | 1_268 | 6 | 975.0 | Region | Transcription repression 1 |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000552960 | - | 1 | 25 | 218_546 | 6 | 975.0 | Region | Transcription repression 2 |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000552960 | - | 1 | 25 | 518_865 | 6 | 975.0 | Region | Note=Histone deacetylase |
| Tgene | CHUK | chr12:48213550 | chr10:101969547 | ENST00000370397 | 8 | 21 | 15_302 | 311 | 746.0 | Domain | Protein kinase | |
| Tgene | CHUK | chr12:48213550 | chr10:101969547 | ENST00000370397 | 8 | 21 | 21_29 | 311 | 746.0 | Nucleotide binding | ATP |
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Fusion Gene Sequence for HDAC7-CHUK |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
| >35857_35857_1_HDAC7-CHUK_HDAC7_chr12_48213550_ENST00000080059_CHUK_chr10_101969547_ENST00000370397_length(transcript)=2624nt_BP=19nt ATGCACAGCCCCGGCGCTGATAGTACACATCCTAAATATGACTTCTGCAAAGATAATTTCTTTTCTGTTACCACCTGATGAAAGTCTTCA TTCACTACAGTCTCGTATTGAGCGTGAAACTGGAATAAATACTGGTTCTCAAGAACTTCTTTCAGAGACAGGAATTTCTCTGGATCCTCG GAAACCAGCCTCTCAATGTGTTCTAGATGGAGTTAGAGGCTGTGATAGCTATATGGTTTATTTGTTTGATAAAAGTAAAACTGTATATGA AGGGCCATTTGCTTCCAGAAGTTTATCTGATTGTGTAAATTATATTGTACAGGACAGCAAAATACAGCTTCCAATTATACAGCTGCGTAA AGTGTGGGCTGAAGCAGTGCACTATGTGTCTGGACTAAAAGAAGACTATAGCAGGCTCTTTCAGGGACAAAGGGCAGCAATGTTAAGTCT TCTTAGATATAATGCTAACTTAACAAAAATGAAGAACACTTTGATCTCAGCATCACAACAACTGAAAGCTAAATTGGAGTTTTTTCACAA AAGCATTCAGCTTGACTTGGAGAGATACAGCGAGCAGATGACGTATGGGATATCTTCAGAAAAAATGCTAAAAGCATGGAAAGAAATGGA AGAAAAGGCCATCCACTATGCTGAGGTTGGTGTCATTGGATACCTGGAGGATCAGATTATGTCTTTGCATGCTGAAATCATGGAGCTACA GAAGAGCCCCTATGGAAGACGTCAGGGAGACTTGATGGAATCTCTGGAACAGCGTGCCATTGATCTATATAAGCAGTTAAAACACAGACC TTCAGATCACTCCTACAGTGACAGCACAGAGATGGTGAAAATCATTGTGCACACTGTGCAGAGTCAGGACCGTGTGCTCAAGGAGCTGTT TGGTCATTTGAGCAAGTTGTTGGGCTGTAAGCAGAAGATTATTGATCTACTCCCTAAGGTGGAAGTGGCCCTCAGTAATATCAAAGAAGC TGACAATACTGTCATGTTCATGCAGGGAAAAAGGCAGAAAGAAATATGGCATCTCCTTAAAATTGCCTGTACACAGAGTTCTGCCCGGTC CCTTGTAGGATCCAGTCTAGAAGGTGCAGTAACCCCTCAGACATCAGCATGGCTGCCCCCGACTTCAGCAGAACATGATCATTCTCTGTC ATGTGTGGTAACTCCTCAAGATGGGGAGACTTCAGCACAAATGATAGAAGAAAATTTGAACTGCCTTGGCCATTTAAGCACTATTATTCA TGAGGCAAATGAGGAACAGGGCAATAGTATGATGAATCTTGATTGGAGTTGGTTAACAGAATGAGTTGTCACTTGTTCACTGTCCCCAAA CCTATGGAAGTTGTTGCTATACATGTTGGAAATGTGTTTTTCCCCCATGAAACCATTCTTCAGACATCAGTCAATGGAAGAAATGGCTAT GAACAGAAACTACATTTCTACTATGATCAGAAGAACATGATTTTACAAGTATAACAGTTTTGAGTAATTCAAGCCTCTAAACAGACAGGA ATTTAGAAAAAGTCAATGTACTTGTTTGAATATTTGTTTTAATACCACAGCTATTTAGAAGCATCATCACGACACATTTGCCTTCAGTCT TGGTAAAACATTACTTATTTAACTGATTAAAAATACCTTCTATGTATTAGTGTCAACTTTTAACTTTTGGGCGTAAGACCAAATGTAGTT TTGTATACAGAGAAGAAAACCTCAAGTAATAGGCATTTTAAGTAAAAGTCTACCTGTGTTTTTTTCTAAAAAGGCTGCTCACAAGTTCTA TTTCTTGAAGAATAAATTCTACCTCCTTGTGTTGCACTGAACAGGTTCTCTTCCTGGCATCATAAGGAGTTGGTGTAATCATTTTAAATT CCACTGAAAATTTAACAGTATCCCCTTCTCATCGAAGGGATTGTGTATCTGTGCTTCTAATATTAGTTGGCTTTCATAAATCATGTTGTT GTGTGTATATGTATTTAAGATGTACATTTAATAATATCAAAGAGAAGATGCCTGTTAATTTATAATGTATTTGAAAATTACATGTTTTTT CATTTGTAAAAATGAGTCATTTGTTTAAACAATCTTTCATGTCTTGTCATACAAATTTATAAAGGTCTGCACTCCTTTATCTGTAATTGT AATTCCAAAATCCAAAAAGCTCTGAAAACAAGGTTTCCATAAGCTTGGTGACAAAATTCATTTGCTTGCAATCTAATCTGAACTGACCTT GAATCTTTTTATCCCATTTAGTGTGAATATTCCTTTATTTTGCTGCTTGATGATGAGAGGGAGGGCTGCTGCCACAGACTGTGGTGAGGG CTGGTTAATGTAGTATGGTATATGCACAAAACTACTTTTCTAAAATCTAAAATTTCATAATTCTGAAACAACTTGCCCCAAGGGTTTCAG AGAAAGGACTGTGGACCTCTATCATCTGCTAAGTAATTTAGAAGATATTATTTGTCTTAAAAAATGTGAAATGCTTTTATATTCTAATAG TTTTTCACTTTGTGTATTAAATGGTTTTTAAATTACTTTCTTGATCTCTATTCATTATAAAAATCAGATTATAATAAAACAGTTGAATAT GGCTTAGGAAAATA >35857_35857_1_HDAC7-CHUK_HDAC7_chr12_48213550_ENST00000080059_CHUK_chr10_101969547_ENST00000370397_length(amino acids)=435AA_BP=1 MIVHILNMTSAKIISFLLPPDESLHSLQSRIERETGINTGSQELLSETGISLDPRKPASQCVLDGVRGCDSYMVYLFDKSKTVYEGPFAS RSLSDCVNYIVQDSKIQLPIIQLRKVWAEAVHYVSGLKEDYSRLFQGQRAAMLSLLRYNANLTKMKNTLISASQQLKAKLEFFHKSIQLD LERYSEQMTYGISSEKMLKAWKEMEEKAIHYAEVGVIGYLEDQIMSLHAEIMELQKSPYGRRQGDLMESLEQRAIDLYKQLKHRPSDHSY SDSTEMVKIIVHTVQSQDRVLKELFGHLSKLLGCKQKIIDLLPKVEVALSNIKEADNTVMFMQGKRQKEIWHLLKIACTQSSARSLVGSS LEGAVTPQTSAWLPPTSAEHDHSLSCVVTPQDGETSAQMIEENLNCLGHLSTIIHEANEEQGNSMMNLDWSWLTE -------------------------------------------------------------- >35857_35857_2_HDAC7-CHUK_HDAC7_chr12_48213550_ENST00000354334_CHUK_chr10_101969547_ENST00000370397_length(transcript)=2705nt_BP=100nt GGCGACTGGGGGGATGTGAGGCCGGCGCCCCAGCCCCCCGCCCCGCCATGAGCCCCCCGCTCTGAGGGCCCCGGCCCCTGGATGCACAGC CCCGGCGCTGATAGTACACATCCTAAATATGACTTCTGCAAAGATAATTTCTTTTCTGTTACCACCTGATGAAAGTCTTCATTCACTACA GTCTCGTATTGAGCGTGAAACTGGAATAAATACTGGTTCTCAAGAACTTCTTTCAGAGACAGGAATTTCTCTGGATCCTCGGAAACCAGC CTCTCAATGTGTTCTAGATGGAGTTAGAGGCTGTGATAGCTATATGGTTTATTTGTTTGATAAAAGTAAAACTGTATATGAAGGGCCATT TGCTTCCAGAAGTTTATCTGATTGTGTAAATTATATTGTACAGGACAGCAAAATACAGCTTCCAATTATACAGCTGCGTAAAGTGTGGGC TGAAGCAGTGCACTATGTGTCTGGACTAAAAGAAGACTATAGCAGGCTCTTTCAGGGACAAAGGGCAGCAATGTTAAGTCTTCTTAGATA TAATGCTAACTTAACAAAAATGAAGAACACTTTGATCTCAGCATCACAACAACTGAAAGCTAAATTGGAGTTTTTTCACAAAAGCATTCA GCTTGACTTGGAGAGATACAGCGAGCAGATGACGTATGGGATATCTTCAGAAAAAATGCTAAAAGCATGGAAAGAAATGGAAGAAAAGGC CATCCACTATGCTGAGGTTGGTGTCATTGGATACCTGGAGGATCAGATTATGTCTTTGCATGCTGAAATCATGGAGCTACAGAAGAGCCC CTATGGAAGACGTCAGGGAGACTTGATGGAATCTCTGGAACAGCGTGCCATTGATCTATATAAGCAGTTAAAACACAGACCTTCAGATCA CTCCTACAGTGACAGCACAGAGATGGTGAAAATCATTGTGCACACTGTGCAGAGTCAGGACCGTGTGCTCAAGGAGCTGTTTGGTCATTT GAGCAAGTTGTTGGGCTGTAAGCAGAAGATTATTGATCTACTCCCTAAGGTGGAAGTGGCCCTCAGTAATATCAAAGAAGCTGACAATAC TGTCATGTTCATGCAGGGAAAAAGGCAGAAAGAAATATGGCATCTCCTTAAAATTGCCTGTACACAGAGTTCTGCCCGGTCCCTTGTAGG ATCCAGTCTAGAAGGTGCAGTAACCCCTCAGACATCAGCATGGCTGCCCCCGACTTCAGCAGAACATGATCATTCTCTGTCATGTGTGGT AACTCCTCAAGATGGGGAGACTTCAGCACAAATGATAGAAGAAAATTTGAACTGCCTTGGCCATTTAAGCACTATTATTCATGAGGCAAA TGAGGAACAGGGCAATAGTATGATGAATCTTGATTGGAGTTGGTTAACAGAATGAGTTGTCACTTGTTCACTGTCCCCAAACCTATGGAA GTTGTTGCTATACATGTTGGAAATGTGTTTTTCCCCCATGAAACCATTCTTCAGACATCAGTCAATGGAAGAAATGGCTATGAACAGAAA CTACATTTCTACTATGATCAGAAGAACATGATTTTACAAGTATAACAGTTTTGAGTAATTCAAGCCTCTAAACAGACAGGAATTTAGAAA AAGTCAATGTACTTGTTTGAATATTTGTTTTAATACCACAGCTATTTAGAAGCATCATCACGACACATTTGCCTTCAGTCTTGGTAAAAC ATTACTTATTTAACTGATTAAAAATACCTTCTATGTATTAGTGTCAACTTTTAACTTTTGGGCGTAAGACCAAATGTAGTTTTGTATACA GAGAAGAAAACCTCAAGTAATAGGCATTTTAAGTAAAAGTCTACCTGTGTTTTTTTCTAAAAAGGCTGCTCACAAGTTCTATTTCTTGAA GAATAAATTCTACCTCCTTGTGTTGCACTGAACAGGTTCTCTTCCTGGCATCATAAGGAGTTGGTGTAATCATTTTAAATTCCACTGAAA ATTTAACAGTATCCCCTTCTCATCGAAGGGATTGTGTATCTGTGCTTCTAATATTAGTTGGCTTTCATAAATCATGTTGTTGTGTGTATA TGTATTTAAGATGTACATTTAATAATATCAAAGAGAAGATGCCTGTTAATTTATAATGTATTTGAAAATTACATGTTTTTTCATTTGTAA AAATGAGTCATTTGTTTAAACAATCTTTCATGTCTTGTCATACAAATTTATAAAGGTCTGCACTCCTTTATCTGTAATTGTAATTCCAAA ATCCAAAAAGCTCTGAAAACAAGGTTTCCATAAGCTTGGTGACAAAATTCATTTGCTTGCAATCTAATCTGAACTGACCTTGAATCTTTT TATCCCATTTAGTGTGAATATTCCTTTATTTTGCTGCTTGATGATGAGAGGGAGGGCTGCTGCCACAGACTGTGGTGAGGGCTGGTTAAT GTAGTATGGTATATGCACAAAACTACTTTTCTAAAATCTAAAATTTCATAATTCTGAAACAACTTGCCCCAAGGGTTTCAGAGAAAGGAC TGTGGACCTCTATCATCTGCTAAGTAATTTAGAAGATATTATTTGTCTTAAAAAATGTGAAATGCTTTTATATTCTAATAGTTTTTCACT TTGTGTATTAAATGGTTTTTAAATTACTTTCTTGATCTCTATTCATTATAAAAATCAGATTATAATAAAACAGTTGAATATGGCTTAGGA AAATA >35857_35857_2_HDAC7-CHUK_HDAC7_chr12_48213550_ENST00000354334_CHUK_chr10_101969547_ENST00000370397_length(amino acids)=447AA_BP=13 MRAPAPGCTAPALIVHILNMTSAKIISFLLPPDESLHSLQSRIERETGINTGSQELLSETGISLDPRKPASQCVLDGVRGCDSYMVYLFD KSKTVYEGPFASRSLSDCVNYIVQDSKIQLPIIQLRKVWAEAVHYVSGLKEDYSRLFQGQRAAMLSLLRYNANLTKMKNTLISASQQLKA KLEFFHKSIQLDLERYSEQMTYGISSEKMLKAWKEMEEKAIHYAEVGVIGYLEDQIMSLHAEIMELQKSPYGRRQGDLMESLEQRAIDLY KQLKHRPSDHSYSDSTEMVKIIVHTVQSQDRVLKELFGHLSKLLGCKQKIIDLLPKVEVALSNIKEADNTVMFMQGKRQKEIWHLLKIAC TQSSARSLVGSSLEGAVTPQTSAWLPPTSAEHDHSLSCVVTPQDGETSAQMIEENLNCLGHLSTIIHEANEEQGNSMMNLDWSWLTE -------------------------------------------------------------- >35857_35857_3_HDAC7-CHUK_HDAC7_chr12_48213550_ENST00000552960_CHUK_chr10_101969547_ENST00000370397_length(transcript)=2725nt_BP=120nt ACAGTCGCTCTGCAGCCTCCGGCGACTGGGGGGATGTGAGGCCGGCGCCCCAGCCCCCCGCCCCGCCATGAGCCCCCCGCTCTGAGGGCC CCGGCCCCTGGATGCACAGCCCCGGCGCTGATAGTACACATCCTAAATATGACTTCTGCAAAGATAATTTCTTTTCTGTTACCACCTGAT GAAAGTCTTCATTCACTACAGTCTCGTATTGAGCGTGAAACTGGAATAAATACTGGTTCTCAAGAACTTCTTTCAGAGACAGGAATTTCT CTGGATCCTCGGAAACCAGCCTCTCAATGTGTTCTAGATGGAGTTAGAGGCTGTGATAGCTATATGGTTTATTTGTTTGATAAAAGTAAA ACTGTATATGAAGGGCCATTTGCTTCCAGAAGTTTATCTGATTGTGTAAATTATATTGTACAGGACAGCAAAATACAGCTTCCAATTATA CAGCTGCGTAAAGTGTGGGCTGAAGCAGTGCACTATGTGTCTGGACTAAAAGAAGACTATAGCAGGCTCTTTCAGGGACAAAGGGCAGCA ATGTTAAGTCTTCTTAGATATAATGCTAACTTAACAAAAATGAAGAACACTTTGATCTCAGCATCACAACAACTGAAAGCTAAATTGGAG TTTTTTCACAAAAGCATTCAGCTTGACTTGGAGAGATACAGCGAGCAGATGACGTATGGGATATCTTCAGAAAAAATGCTAAAAGCATGG AAAGAAATGGAAGAAAAGGCCATCCACTATGCTGAGGTTGGTGTCATTGGATACCTGGAGGATCAGATTATGTCTTTGCATGCTGAAATC ATGGAGCTACAGAAGAGCCCCTATGGAAGACGTCAGGGAGACTTGATGGAATCTCTGGAACAGCGTGCCATTGATCTATATAAGCAGTTA AAACACAGACCTTCAGATCACTCCTACAGTGACAGCACAGAGATGGTGAAAATCATTGTGCACACTGTGCAGAGTCAGGACCGTGTGCTC AAGGAGCTGTTTGGTCATTTGAGCAAGTTGTTGGGCTGTAAGCAGAAGATTATTGATCTACTCCCTAAGGTGGAAGTGGCCCTCAGTAAT ATCAAAGAAGCTGACAATACTGTCATGTTCATGCAGGGAAAAAGGCAGAAAGAAATATGGCATCTCCTTAAAATTGCCTGTACACAGAGT TCTGCCCGGTCCCTTGTAGGATCCAGTCTAGAAGGTGCAGTAACCCCTCAGACATCAGCATGGCTGCCCCCGACTTCAGCAGAACATGAT CATTCTCTGTCATGTGTGGTAACTCCTCAAGATGGGGAGACTTCAGCACAAATGATAGAAGAAAATTTGAACTGCCTTGGCCATTTAAGC ACTATTATTCATGAGGCAAATGAGGAACAGGGCAATAGTATGATGAATCTTGATTGGAGTTGGTTAACAGAATGAGTTGTCACTTGTTCA CTGTCCCCAAACCTATGGAAGTTGTTGCTATACATGTTGGAAATGTGTTTTTCCCCCATGAAACCATTCTTCAGACATCAGTCAATGGAA GAAATGGCTATGAACAGAAACTACATTTCTACTATGATCAGAAGAACATGATTTTACAAGTATAACAGTTTTGAGTAATTCAAGCCTCTA AACAGACAGGAATTTAGAAAAAGTCAATGTACTTGTTTGAATATTTGTTTTAATACCACAGCTATTTAGAAGCATCATCACGACACATTT GCCTTCAGTCTTGGTAAAACATTACTTATTTAACTGATTAAAAATACCTTCTATGTATTAGTGTCAACTTTTAACTTTTGGGCGTAAGAC CAAATGTAGTTTTGTATACAGAGAAGAAAACCTCAAGTAATAGGCATTTTAAGTAAAAGTCTACCTGTGTTTTTTTCTAAAAAGGCTGCT CACAAGTTCTATTTCTTGAAGAATAAATTCTACCTCCTTGTGTTGCACTGAACAGGTTCTCTTCCTGGCATCATAAGGAGTTGGTGTAAT CATTTTAAATTCCACTGAAAATTTAACAGTATCCCCTTCTCATCGAAGGGATTGTGTATCTGTGCTTCTAATATTAGTTGGCTTTCATAA ATCATGTTGTTGTGTGTATATGTATTTAAGATGTACATTTAATAATATCAAAGAGAAGATGCCTGTTAATTTATAATGTATTTGAAAATT ACATGTTTTTTCATTTGTAAAAATGAGTCATTTGTTTAAACAATCTTTCATGTCTTGTCATACAAATTTATAAAGGTCTGCACTCCTTTA TCTGTAATTGTAATTCCAAAATCCAAAAAGCTCTGAAAACAAGGTTTCCATAAGCTTGGTGACAAAATTCATTTGCTTGCAATCTAATCT GAACTGACCTTGAATCTTTTTATCCCATTTAGTGTGAATATTCCTTTATTTTGCTGCTTGATGATGAGAGGGAGGGCTGCTGCCACAGAC TGTGGTGAGGGCTGGTTAATGTAGTATGGTATATGCACAAAACTACTTTTCTAAAATCTAAAATTTCATAATTCTGAAACAACTTGCCCC AAGGGTTTCAGAGAAAGGACTGTGGACCTCTATCATCTGCTAAGTAATTTAGAAGATATTATTTGTCTTAAAAAATGTGAAATGCTTTTA TATTCTAATAGTTTTTCACTTTGTGTATTAAATGGTTTTTAAATTACTTTCTTGATCTCTATTCATTATAAAAATCAGATTATAATAAAA CAGTTGAATATGGCTTAGGAAAATA >35857_35857_3_HDAC7-CHUK_HDAC7_chr12_48213550_ENST00000552960_CHUK_chr10_101969547_ENST00000370397_length(amino acids)=447AA_BP=13 MRAPAPGCTAPALIVHILNMTSAKIISFLLPPDESLHSLQSRIERETGINTGSQELLSETGISLDPRKPASQCVLDGVRGCDSYMVYLFD KSKTVYEGPFASRSLSDCVNYIVQDSKIQLPIIQLRKVWAEAVHYVSGLKEDYSRLFQGQRAAMLSLLRYNANLTKMKNTLISASQQLKA KLEFFHKSIQLDLERYSEQMTYGISSEKMLKAWKEMEEKAIHYAEVGVIGYLEDQIMSLHAEIMELQKSPYGRRQGDLMESLEQRAIDLY KQLKHRPSDHSYSDSTEMVKIIVHTVQSQDRVLKELFGHLSKLLGCKQKIIDLLPKVEVALSNIKEADNTVMFMQGKRQKEIWHLLKIAC TQSSARSLVGSSLEGAVTPQTSAWLPPTSAEHDHSLSCVVTPQDGETSAQMIEENLNCLGHLSTIIHEANEEQGNSMMNLDWSWLTE -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for HDAC7-CHUK |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000080059 | - | 1 | 26 | 49_149 | 6.333333333333333 | 992.0 | MEF2A |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000354334 | - | 1 | 25 | 49_149 | 6.333333333333333 | 955.0 | MEF2A |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000427332 | - | 1 | 26 | 49_149 | 0 | 953.0 | MEF2A |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000552960 | - | 1 | 25 | 49_149 | 6.333333333333333 | 975.0 | MEF2A |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000080059 | - | 1 | 26 | 1_98 | 6.333333333333333 | 992.0 | MEF2C |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000354334 | - | 1 | 25 | 1_98 | 6.333333333333333 | 955.0 | MEF2C |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000427332 | - | 1 | 26 | 1_98 | 0 | 953.0 | MEF2C |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000552960 | - | 1 | 25 | 1_98 | 6.333333333333333 | 975.0 | MEF2C |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000080059 | - | 1 | 26 | 877_952 | 6.333333333333333 | 992.0 | SIN3A |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000354334 | - | 1 | 25 | 877_952 | 6.333333333333333 | 955.0 | SIN3A |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000427332 | - | 1 | 26 | 877_952 | 0 | 953.0 | SIN3A |
| Hgene | HDAC7 | chr12:48213550 | chr10:101969547 | ENST00000552960 | - | 1 | 25 | 877_952 | 6.333333333333333 | 975.0 | SIN3A |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for HDAC7-CHUK |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for HDAC7-CHUK |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | C0013949 | Embryopathies | 4 | CTD_human | |
| Tgene | C0015929 | Fetal Diseases | 4 | CTD_human | |
| Tgene | C0206762 | Limb Deformities, Congenital | 4 | CTD_human | |
| Tgene | C0037268 | Skin Abnormalities | 3 | CTD_human | |
| Tgene | C0000772 | Multiple congenital anomalies | 1 | CTD_human | |
| Tgene | C0005941 | Bone Diseases, Developmental | 1 | CTD_human | |
| Tgene | C0008925 | Cleft Palate | 1 | CTD_human | |
| Tgene | C1837218 | Cleft palate, isolated | 1 | CTD_human | |
| Tgene | C3150891 | COCOON SYNDROME | 1 | CTD_human;GENOMICS_ENGLAND;ORPHANET |
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