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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:ARID4B-IGFN1 (FusionGDB2 ID:HG51742TG91156)

Fusion Gene Summary for ARID4B-IGFN1

check button Fusion gene summary
Fusion gene informationFusion gene name: ARID4B-IGFN1
Fusion gene ID: hg51742tg91156
HgeneTgene
Gene symbol

ARID4B

IGFN1

Gene ID

51742

91156

Gene nameAT-rich interaction domain 4Bimmunoglobulin like and fibronectin type III domain containing 1
SynonymsBCAA|BRCAA1|RBBP1L1|RBP1L1|SAP180EEF1A2BP1
Cytomap('ARID4B')('IGFN1')

1q42.3

1q32.1

Type of geneprotein-codingprotein-coding
DescriptionAT-rich interactive domain-containing protein 4B180 kDa Sin3-associated polypeptideARID domain-containing protein 4BAT rich interactive domain 4B (RBP1-like)Rb-binding protein homologSIN3A-associated protein 180breast cancer-associated antigen 1breimmunoglobulin-like and fibronectin type III domain-containing protein 1EEF1A2-binding protein 1KY-interacting protein 1eEF1A2 binding protein
Modification date2020032020200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000264183, ENST00000349213, 
ENST00000366603, ENST00000494543, 
Fusion gene scores* DoF score23 X 20 X 9=41404 X 5 X 4=80
# samples 294
** MAII scorelog2(29/4140*10)=-3.83550596237175
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(4/80*10)=-1
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: ARID4B [Title/Abstract] AND IGFN1 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointARID4B(235491084)-IGFN1(201194952), # samples:3
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID


check button Fusion gene information
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4SKCMTCGA-QB-AA9O-06AARID4Bchr1

235491084

-IGFN1chr1

201191867

+
ChimerDB4SKCMTCGA-QB-AA9O-06AARID4Bchr1

235491084

-IGFN1chr1

201194952

+


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Fusion Gene ORF analysis for ARID4B-IGFN1

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5UTR-3CDSENST00000264183ENST00000295591ARID4Bchr1

235491084

-IGFN1chr1

201191867

+
5UTR-3CDSENST00000264183ENST00000295591ARID4Bchr1

235491084

-IGFN1chr1

201194952

+
5UTR-3CDSENST00000264183ENST00000335211ARID4Bchr1

235491084

-IGFN1chr1

201191867

+
5UTR-3CDSENST00000264183ENST00000335211ARID4Bchr1

235491084

-IGFN1chr1

201194952

+
5UTR-3CDSENST00000349213ENST00000295591ARID4Bchr1

235491084

-IGFN1chr1

201191867

+
5UTR-3CDSENST00000349213ENST00000295591ARID4Bchr1

235491084

-IGFN1chr1

201194952

+
5UTR-3CDSENST00000349213ENST00000335211ARID4Bchr1

235491084

-IGFN1chr1

201191867

+
5UTR-3CDSENST00000349213ENST00000335211ARID4Bchr1

235491084

-IGFN1chr1

201194952

+
5UTR-intronENST00000264183ENST00000451870ARID4Bchr1

235491084

-IGFN1chr1

201191867

+
5UTR-intronENST00000264183ENST00000451870ARID4Bchr1

235491084

-IGFN1chr1

201194952

+
5UTR-intronENST00000349213ENST00000451870ARID4Bchr1

235491084

-IGFN1chr1

201191867

+
5UTR-intronENST00000349213ENST00000451870ARID4Bchr1

235491084

-IGFN1chr1

201194952

+
intron-3CDSENST00000366603ENST00000295591ARID4Bchr1

235491084

-IGFN1chr1

201191867

+
intron-3CDSENST00000366603ENST00000295591ARID4Bchr1

235491084

-IGFN1chr1

201194952

+
intron-3CDSENST00000366603ENST00000335211ARID4Bchr1

235491084

-IGFN1chr1

201191867

+
intron-3CDSENST00000366603ENST00000335211ARID4Bchr1

235491084

-IGFN1chr1

201194952

+
intron-3CDSENST00000494543ENST00000295591ARID4Bchr1

235491084

-IGFN1chr1

201191867

+
intron-3CDSENST00000494543ENST00000295591ARID4Bchr1

235491084

-IGFN1chr1

201194952

+
intron-3CDSENST00000494543ENST00000335211ARID4Bchr1

235491084

-IGFN1chr1

201191867

+
intron-3CDSENST00000494543ENST00000335211ARID4Bchr1

235491084

-IGFN1chr1

201194952

+
intron-intronENST00000366603ENST00000451870ARID4Bchr1

235491084

-IGFN1chr1

201191867

+
intron-intronENST00000366603ENST00000451870ARID4Bchr1

235491084

-IGFN1chr1

201194952

+
intron-intronENST00000494543ENST00000451870ARID4Bchr1

235491084

-IGFN1chr1

201191867

+
intron-intronENST00000494543ENST00000451870ARID4Bchr1

235491084

-IGFN1chr1

201194952

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for ARID4B-IGFN1


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
ARID4Bchr1235491083-IGFN1chr1201191866+7.80E-050.99992204
ARID4Bchr1235491083-IGFN1chr1201194951+4.48E-050.9999553
ARID4Bchr1235491083-IGFN1chr1201191866+7.80E-050.99992204
ARID4Bchr1235491083-IGFN1chr1201194951+4.48E-050.9999553


check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

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Fusion Protein Features for ARID4B-IGFN1


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:235491084/:201194952)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for ARID4B-IGFN1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for ARID4B-IGFN1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for ARID4B-IGFN1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for ARID4B-IGFN1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneARID4BC0010606Adenoid Cystic Carcinoma1CTD_human