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![]() | Fusion Gene Summary |
![]() | Fusion Gene ORF analysis |
![]() | Fusion Genomic Features |
![]() | Fusion Protein Features |
![]() | Fusion Gene Sequence |
![]() | Fusion Gene PPI analysis |
![]() | Related Drugs |
![]() | Related Diseases |
Fusion gene:ATP5I-PSMC2 (FusionGDB2 ID:HG521TG5701) |
Fusion Gene Summary for ATP5I-PSMC2 |
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Fusion gene information | Fusion gene name: ATP5I-PSMC2 | Fusion gene ID: hg521tg5701 | Hgene | Tgene | Gene symbol | ATP5I | PSMC2 | Gene ID | 521 | 5701 |
Gene name | ATP synthase membrane subunit e | proteasome 26S subunit, ATPase 2 | |
Synonyms | ATP5I|ATP5K | MSS1|Nbla10058|S7 | |
Cytomap | ('ATP5I')('PSMC2') 4p16.3 | 7q22.1 | |
Type of gene | protein-coding | protein-coding | |
Description | ATP synthase subunit e, mitochondrialATP synthase e chain, mitochondrialATP synthase, H+ transporting, mitochondrial F0 complex, subunit EATP synthase, H+ transporting, mitochondrial Fo complex subunit EATPase subunit eF1F0-ATP synthase, murine e sub | 26S proteasome regulatory subunit 726S protease regulatory subunit 726S proteasome AAA-ATPase subunit RPT1mammalian suppressor of sgv-1 of yeastprotease 26S subunit 7proteasome (prosome, macropain) 26S subunit, ATPase, 2putative protein product of N | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000304312, ENST00000506525, | ||
Fusion gene scores | * DoF score | 9 X 9 X 4=324 | 5 X 6 X 3=90 |
# samples | 12 | 6 | |
** MAII score | log2(12/324*10)=-1.43295940727611 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(6/90*10)=-0.584962500721156 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: ATP5I [Title/Abstract] AND PSMC2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | ATP5I(667092)-PSMC2(102994368), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | ATP5I | GO:0042776 | mitochondrial ATP synthesis coupled proton transport | 12110673 |
Tgene | PSMC2 | GO:0006511 | ubiquitin-dependent protein catabolic process | 9295362 |
![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | STAD | TCGA-HU-A4GN-01A | ATP5I | chr4 | 667092 | - | PSMC2 | chr7 | 102994368 | + |
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Fusion Gene ORF analysis for ATP5I-PSMC2 |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-5UTR | ENST00000304312 | ENST00000544811 | ATP5I | chr4 | 667092 | - | PSMC2 | chr7 | 102994368 | + |
5UTR-3CDS | ENST00000506525 | ENST00000292644 | ATP5I | chr4 | 667092 | - | PSMC2 | chr7 | 102994368 | + |
5UTR-3CDS | ENST00000506525 | ENST00000435765 | ATP5I | chr4 | 667092 | - | PSMC2 | chr7 | 102994368 | + |
5UTR-5UTR | ENST00000506525 | ENST00000544811 | ATP5I | chr4 | 667092 | - | PSMC2 | chr7 | 102994368 | + |
In-frame | ENST00000304312 | ENST00000292644 | ATP5I | chr4 | 667092 | - | PSMC2 | chr7 | 102994368 | + |
In-frame | ENST00000304312 | ENST00000435765 | ATP5I | chr4 | 667092 | - | PSMC2 | chr7 | 102994368 | + |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000304312 | ATP5I | chr4 | 667092 | - | ENST00000435765 | PSMC2 | chr7 | 102994368 | + | 2854 | 281 | 10 | 1512 | 500 |
ENST00000304312 | ATP5I | chr4 | 667092 | - | ENST00000292644 | PSMC2 | chr7 | 102994368 | + | 1667 | 281 | 10 | 1512 | 500 |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000304312 | ENST00000435765 | ATP5I | chr4 | 667092 | - | PSMC2 | chr7 | 102994368 | + | 0.000697361 | 0.9993026 |
ENST00000304312 | ENST00000292644 | ATP5I | chr4 | 667092 | - | PSMC2 | chr7 | 102994368 | + | 0.002494343 | 0.9975057 |
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Fusion Genomic Features for ATP5I-PSMC2 |
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Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
ATP5I | chr4 | 667091 | - | PSMC2 | chr7 | 102994367 | + | 0.00419917 | 0.9958008 |
ATP5I | chr4 | 667091 | - | PSMC2 | chr7 | 102994367 | + | 0.00419917 | 0.9958008 |
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Fusion Protein Features for ATP5I-PSMC2 |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr4:667092/chr7:102994368) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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Hgene | Tgene |
. | . |
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | PSMC2 | chr4:667092 | chr7:102994368 | ENST00000292644 | 0 | 12 | 216_223 | 23 | 434.0 | Nucleotide binding | ATP | |
Tgene | PSMC2 | chr4:667092 | chr7:102994368 | ENST00000435765 | 1 | 13 | 216_223 | 23 | 434.0 | Nucleotide binding | ATP |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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Fusion Gene Sequence for ATP5I-PSMC2 |
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>8004_8004_1_ATP5I-PSMC2_ATP5I_chr4_667092_ENST00000304312_PSMC2_chr7_102994368_ENST00000292644_length(transcript)=1667nt_BP=281nt AGCTCCGCCTTTGCCTCCAAGGCTTTGCTGGCTTGTGCGGCATCCTGCTCCGTCTGCAGGTTGTGCTTCCGGTGCGGAGGTCAGGGACAA GATGGTGCCACCGGTGCAGGTCTCTCCGCTCATCAAGCTCGGCCGCTACTCCGCCCTGTTCCTCGGTGTGGCCTACGGAGCCACGCGCTA CAATTACCTAAAACCTCGGGCAGAAGAGGAGAGGAGGATAGCAGCAGAAGAGAAGAAGAAGCAGGATGAACTGAAACGGATTGCCAGAGA ATTGGCAGAAGCTCTGGATGAGGGGGATATTGCCTTGTTGAAAACTTATGGTCAGAGCACTTACTCTAGGCAGATCAAGCAAGTTGAAGA TGACATTCAGCAACTTCTCAAGAAAATTAATGAGCTCACTGGTATTAAAGAATCTGACACTGGCCTGGCCCCACCAGCACTCTGGGATTT GGCTGCAGATAAGCAGACACTCCAGAGTGAACAGCCTTTACAGGTTGCCAGGTGTACAAAGATAATCAATGCTGATTCGGAGGACCCAAA ATACATTATCAACGTAAAGCAGTTTGCCAAGTTTGTGGTGGACCTTAGTGATCAGGTGGCACCTACTGACATTGAAGAAGGGATGAGAGT GGGCGTGGATAGAAATAAATATCAAATTCACATTCCATTGCCTCCTAAGATTGACCCAACAGTTACCATGATGCAGGTGGAAGAGAAACC TGATGTCACATACAGTGATGTTGGTGGCTGTAAGGAACAGATTGAGAAACTGCGAGAAGTAGTTGAAACCCCATTACTTCATCCAGAGAG GTTTGTGAACCTTGGCATTGAGCCTCCCAAGGGCGTGCTGCTCTTTGGTCCACCCGGTACAGGCAAGACACTCTGTGCGCGGGCAGTTGC TAATCGGACTGATGCGTGCTTCATTCGAGTTATTGGATCTGAGCTTGTACAGAAATACGTCGGTGAGGGGGCTCGAATGGTTCGTGAACT CTTTGAAATGGCCAGAACAAAAAAAGCCTGCCTTATCTTCTTTGATGAAATTGATGCTATTGGAGGGGCTCGTTTTGATGATGGTGCTGG AGGTGACAATGAAGTGCAGAGAACAATGTTGGAACTGATCAATCAGCTTGATGGTTTTGATCCTAGAGGCAATATTAAAGTGCTGATGGC CACTAACAGACCTGATACTTTGGATCCAGCACTGATGAGGCCAGGGAGATTGGATAGAAAAATTGAATTTAGCTTGCCCGATCTAGAGGG TCGGACCCACATATTTAAGATTCACGCTCGTTCAATGAGTGTTGAAAGAGATATCAGATTTGAACTGTTAGCACGACTGTGTCCAAATAG CACTGGTGCTGAGATTAGAAGCGTCTGCACAGAGGCTGGTATGTTTGCCATCAGAGCACGGCGAAAAATTGCTACCGAGAAGGATTTCTT GGAAGCTGTAAATAAGGTCATTAAGTCTTATGCCAAATTCAGTGCTACTCCTCGTTACATGACATACAACTGAACCCTGAAGGCTTTCAA GTGAAAACTTTAAATTGGAATCCTAACCTTATATAGACTTGTTAATAACCAATTCATAAACAAATAAATGGCTTCAAAATTGTATGCTTT TTTCCATATCTCTTCTTGTAATATAATAAAAGGTGATTTCTAATGTT >8004_8004_1_ATP5I-PSMC2_ATP5I_chr4_667092_ENST00000304312_PSMC2_chr7_102994368_ENST00000292644_length(amino acids)=500AA_BP=90 MPPRLCWLVRHPAPSAGCASGAEVRDKMVPPVQVSPLIKLGRYSALFLGVAYGATRYNYLKPRAEEERRIAAEEKKKQDELKRIARELAE ALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYII NVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVN LGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDN EVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGA EIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIKSYAKFSATPRYMTYN -------------------------------------------------------------- >8004_8004_2_ATP5I-PSMC2_ATP5I_chr4_667092_ENST00000304312_PSMC2_chr7_102994368_ENST00000435765_length(transcript)=2854nt_BP=281nt AGCTCCGCCTTTGCCTCCAAGGCTTTGCTGGCTTGTGCGGCATCCTGCTCCGTCTGCAGGTTGTGCTTCCGGTGCGGAGGTCAGGGACAA GATGGTGCCACCGGTGCAGGTCTCTCCGCTCATCAAGCTCGGCCGCTACTCCGCCCTGTTCCTCGGTGTGGCCTACGGAGCCACGCGCTA CAATTACCTAAAACCTCGGGCAGAAGAGGAGAGGAGGATAGCAGCAGAAGAGAAGAAGAAGCAGGATGAACTGAAACGGATTGCCAGAGA ATTGGCAGAAGCTCTGGATGAGGGGGATATTGCCTTGTTGAAAACTTATGGTCAGAGCACTTACTCTAGGCAGATCAAGCAAGTTGAAGA TGACATTCAGCAACTTCTCAAGAAAATTAATGAGCTCACTGGTATTAAAGAATCTGACACTGGCCTGGCCCCACCAGCACTCTGGGATTT GGCTGCAGATAAGCAGACACTCCAGAGTGAACAGCCTTTACAGGTTGCCAGGTGTACAAAGATAATCAATGCTGATTCGGAGGACCCAAA ATACATTATCAACGTAAAGCAGTTTGCCAAGTTTGTGGTGGACCTTAGTGATCAGGTGGCACCTACTGACATTGAAGAAGGGATGAGAGT GGGCGTGGATAGAAATAAATATCAAATTCACATTCCATTGCCTCCTAAGATTGACCCAACAGTTACCATGATGCAGGTGGAAGAGAAACC TGATGTCACATACAGTGATGTTGGTGGCTGTAAGGAACAGATTGAGAAACTGCGAGAAGTAGTTGAAACCCCATTACTTCATCCAGAGAG GTTTGTGAACCTTGGCATTGAGCCTCCCAAGGGCGTGCTGCTCTTTGGTCCACCCGGTACAGGCAAGACACTCTGTGCGCGGGCAGTTGC TAATCGGACTGATGCGTGCTTCATTCGAGTTATTGGATCTGAGCTTGTACAGAAATACGTCGGTGAGGGGGCTCGAATGGTTCGTGAACT CTTTGAAATGGCCAGAACAAAAAAAGCCTGCCTTATCTTCTTTGATGAAATTGATGCTATTGGAGGGGCTCGTTTTGATGATGGTGCTGG AGGTGACAATGAAGTGCAGAGAACAATGTTGGAACTGATCAATCAGCTTGATGGTTTTGATCCTAGAGGCAATATTAAAGTGCTGATGGC CACTAACAGACCTGATACTTTGGATCCAGCACTGATGAGGCCAGGGAGATTGGATAGAAAAATTGAATTTAGCTTGCCCGATCTAGAGGG TCGGACCCACATATTTAAGATTCACGCTCGTTCAATGAGTGTTGAAAGAGATATCAGATTTGAACTGTTAGCACGACTGTGTCCAAATAG CACTGGTGCTGAGATTAGAAGCGTCTGCACAGAGGCTGGTATGTTTGCCATCAGAGCACGGCGAAAAATTGCTACCGAGAAGGATTTCTT GGAAGCTGTAAATAAGGTCATTAAGTCTTATGCCAAATTCAGTGCTACTCCTCGTTACATGACATACAACTGAACCCTGAAGGCTTTCAA GTGAAAACTTTAAATTGGAATCCTAACCTTATATAGACTTGTTAATAACCAATTCATAAACAAATAAATGGCTTCAAAATTGTATGCTTT TTTCCATATCTCTTCTTGTAATATAATAAAAGGTGATTTCTAATGTTATTAGGCAGAAAAGCTTGTTAGAATATATTTTGACTATTTTTT TGACCCACACCCGTTTAAGGATTTCACATCATACAAAGCGCTTGCTTAGATGGCTTCTATCCTAGGCATATGCTGGCCGGGTGCTCTACA TATAAATTCTCATTGTATCCTCCCATCTGTCCACTGAGGAAGATTATCAAATGGATCTTCATCCAATGGATGCATAAACTTTCCTACTTA CTTGTAGTGGCAAAGCTGGCTTTCAAGTACAAGTTTGTTGGCTCCATTACCTATGCTCCTATTATCCGCTTCTGTCCCGCAACAAAGTAG CTCACTTAGGCGTATGACCACATGCATTATGATAGTTTCCCACCACCATATTGAATAATAAAAGCTTTGGCCAAAGCTTTTTTAAAGTAG GAGAAACATTGGATGTATATGTTTTGCATTGCCATTTGATTTCAAATTAATCAGGAAGAATTAGTGATTTTAATGAGCAGTAAAGTGGTG CAATAAAGCAGAAAGAAAAATGTTCAGCCAGAAGTGAAAGACTAGTAAAAAAAGAAAAAAAAATATTTGTACATATGATCTAATTTAGAA AGTCCAGAATTGGCTTCATACAGAAAAGTGATTACTTTCATTTTACAAATTACTTTAAAATTTTGGTAAAGTTTCTGTTAGGCTTCTGGT CTACAGTGAGGTATTTTAAAAATAAAGGTTATATTAGAATCCTCAACATCTCTTTAAAATTACCTCCTGTGTAACCACCACCAAATCCTA TCTTCTACCACAATTACCCCTTCCCCCAATGCCAAGACCAAAGCACAATAATGAATATTTTTATTGAAGTTCGATATTCATAAATAAGTT GCAAAATAAGAGTTGGATATATTTTTAATTCACAATAGAAAAAGTTGACAACATAGAAAATGCTGCTTTGCACTGAAATACTTAAAATTA TGAAAGTTTTCAAGTAAAGAAATTAAAGCCTTTTATAAAATCCAACCAACATTCTTGATTTTTCATTTTTATGAACTTGATCAGAAAAAT TCATCTTTTTTAACCCTGCCCTAATTTTTCTTGAGGAATTAAATAGAGCAAACTATTTTCAGGTTATGCTTACAATAAAATATACTTAAG AAAATGACTGAAGATGTATGTTTTTGAATGTTTTGATTAAATAAATGTACACATTTAGAACACA >8004_8004_2_ATP5I-PSMC2_ATP5I_chr4_667092_ENST00000304312_PSMC2_chr7_102994368_ENST00000435765_length(amino acids)=500AA_BP=90 MPPRLCWLVRHPAPSAGCASGAEVRDKMVPPVQVSPLIKLGRYSALFLGVAYGATRYNYLKPRAEEERRIAAEEKKKQDELKRIARELAE ALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYII NVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVN LGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDN EVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGA EIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIKSYAKFSATPRYMTYN -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for ATP5I-PSMC2 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for ATP5I-PSMC2 |
![]() (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for ATP5I-PSMC2 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |