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![]() | Fusion Gene Summary |
![]() | Fusion Gene ORF analysis |
![]() | Fusion Genomic Features |
![]() | Fusion Protein Features |
![]() | Fusion Gene Sequence |
![]() | Fusion Gene PPI analysis |
![]() | Related Drugs |
![]() | Related Diseases |
Fusion gene:RBM38-DNAJC5B (FusionGDB2 ID:HG55544TG85479) |
Fusion Gene Summary for RBM38-DNAJC5B |
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Fusion gene information | Fusion gene name: RBM38-DNAJC5B | Fusion gene ID: hg55544tg85479 | Hgene | Tgene | Gene symbol | RBM38 | DNAJC5B | Gene ID | 55544 | 85479 |
Gene name | RNA binding motif protein 38 | DnaJ heat shock protein family (Hsp40) member C5 beta | |
Synonyms | HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2 | CSP-beta | |
Cytomap | ('RBM38')('DNAJC5B') 20q13.31 | 8q13.1 | |
Type of gene | protein-coding | protein-coding | |
Description | RNA-binding protein 38CLL-associated antigen KW-5RNA-binding region (RNP1, RRM) containing 1RNA-binding region-containing protein 1ssDNA-binding protein SEB4 | dnaJ homolog subfamily C member 5BDnaJ (Hsp40) homolog, subfamily C, member 5 betabeta cysteine string proteinbeta-CSPcysteine string protein betadnaJ homolog subfamily C member Xtesticular tissue protein Li 55 | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000356208, ENST00000371219, ENST00000440234, | ||
Fusion gene scores | * DoF score | 11 X 5 X 6=330 | 5 X 4 X 3=60 |
# samples | 10 | 5 | |
** MAII score | log2(10/330*10)=-1.72246602447109 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(5/60*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: RBM38 [Title/Abstract] AND DNAJC5B [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | RBM38(55968389)-DNAJC5B(66988895), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. | RBM38-DNAJC5B seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. RBM38-DNAJC5B seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. RBM38-DNAJC5B seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. RBM38-DNAJC5B seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | RBM38 | GO:0043484 | regulation of RNA splicing | 19285943 |
![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | BRCA | TCGA-3C-AALJ-01A | RBM38 | chr20 | 55968389 | + | DNAJC5B | chr8 | 66968701 | + |
ChimerDB4 | BRCA | TCGA-3C-AALJ-01A | RBM38 | chr20 | 55968389 | - | DNAJC5B | chr8 | 66988895 | + |
ChimerDB4 | BRCA | TCGA-3C-AALJ-01A | RBM38 | chr20 | 55968389 | + | DNAJC5B | chr8 | 66988895 | + |
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Fusion Gene ORF analysis for RBM38-DNAJC5B |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-3UTR | ENST00000356208 | ENST00000519330 | RBM38 | chr20 | 55968389 | + | DNAJC5B | chr8 | 66968701 | + |
5CDS-3UTR | ENST00000356208 | ENST00000519330 | RBM38 | chr20 | 55968389 | + | DNAJC5B | chr8 | 66988895 | + |
5CDS-3UTR | ENST00000371219 | ENST00000519330 | RBM38 | chr20 | 55968389 | + | DNAJC5B | chr8 | 66968701 | + |
5CDS-3UTR | ENST00000371219 | ENST00000519330 | RBM38 | chr20 | 55968389 | + | DNAJC5B | chr8 | 66988895 | + |
5CDS-intron | ENST00000356208 | ENST00000276570 | RBM38 | chr20 | 55968389 | + | DNAJC5B | chr8 | 66968701 | + |
5CDS-intron | ENST00000371219 | ENST00000276570 | RBM38 | chr20 | 55968389 | + | DNAJC5B | chr8 | 66968701 | + |
In-frame | ENST00000356208 | ENST00000276570 | RBM38 | chr20 | 55968389 | + | DNAJC5B | chr8 | 66988895 | + |
In-frame | ENST00000371219 | ENST00000276570 | RBM38 | chr20 | 55968389 | + | DNAJC5B | chr8 | 66988895 | + |
intron-3CDS | ENST00000440234 | ENST00000276570 | RBM38 | chr20 | 55968389 | + | DNAJC5B | chr8 | 66988895 | + |
intron-3UTR | ENST00000440234 | ENST00000519330 | RBM38 | chr20 | 55968389 | + | DNAJC5B | chr8 | 66968701 | + |
intron-3UTR | ENST00000440234 | ENST00000519330 | RBM38 | chr20 | 55968389 | + | DNAJC5B | chr8 | 66988895 | + |
intron-intron | ENST00000440234 | ENST00000276570 | RBM38 | chr20 | 55968389 | + | DNAJC5B | chr8 | 66968701 | + |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000356208 | RBM38 | chr20 | 55968389 | + | ENST00000276570 | DNAJC5B | chr8 | 66988895 | + | 1557 | 591 | 79 | 1071 | 330 |
ENST00000371219 | RBM38 | chr20 | 55968389 | + | ENST00000276570 | DNAJC5B | chr8 | 66988895 | + | 1408 | 442 | 101 | 922 | 273 |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000356208 | ENST00000276570 | RBM38 | chr20 | 55968389 | + | DNAJC5B | chr8 | 66988895 | + | 0.003810874 | 0.9961892 |
ENST00000371219 | ENST00000276570 | RBM38 | chr20 | 55968389 | + | DNAJC5B | chr8 | 66988895 | + | 0.00362961 | 0.99637043 |
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Fusion Genomic Features for RBM38-DNAJC5B |
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Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
RBM38 | chr20 | 55968389 | + | DNAJC5B | chr8 | 66968700 | + | 0.001597322 | 0.99840266 |
RBM38 | chr20 | 55968389 | + | DNAJC5B | chr8 | 66988894 | + | 5.07E-06 | 0.9999949 |
RBM38 | chr20 | 55968389 | + | DNAJC5B | chr8 | 66968700 | + | 0.001597322 | 0.99840266 |
RBM38 | chr20 | 55968389 | + | DNAJC5B | chr8 | 66988894 | + | 5.07E-06 | 0.9999949 |
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Fusion Protein Features for RBM38-DNAJC5B |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr20:55968389/chr8:66988895) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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Hgene | Tgene |
. | . |
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | RBM38 | chr20:55968389 | chr8:66988895 | ENST00000356208 | + | 3 | 4 | 34_111 | 138 | 240.0 | Domain | RRM |
Tgene | DNAJC5B | chr20:55968389 | chr8:66988895 | ENST00000276570 | 2 | 6 | 123_140 | 39 | 200.0 | Compositional bias | Note=Cys-rich | |
Tgene | DNAJC5B | chr20:55968389 | chr8:66988895 | ENST00000276570 | 2 | 6 | 126_137 | 39 | 200.0 | Compositional bias | Note=Poly-Cys |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | RBM38 | chr20:55968389 | chr8:66988895 | ENST00000440234 | + | 1 | 3 | 34_111 | 0 | 122.0 | Domain | RRM |
Tgene | DNAJC5B | chr20:55968389 | chr8:66988895 | ENST00000276570 | 2 | 6 | 19_84 | 39 | 200.0 | Domain | J |
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Fusion Gene Sequence for RBM38-DNAJC5B |
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>72865_72865_1_RBM38-DNAJC5B_RBM38_chr20_55968389_ENST00000356208_DNAJC5B_chr8_66988895_ENST00000276570_length(transcript)=1557nt_BP=591nt GCAGCGCCGGTCGGGAGCGCAGCGCGGCGCACGTCGGCGCGCACGGCGGGACGGGCGCCGGAGTGGTCGGGCCTGGCGGCTGGACGGGCG CCCCTCGCTGCCCCGCGCGCTCCCCGCCGCCCCCCATGAGCGCAGCCCCGCGCGGCCCGGGTCCGTAGGCGGCGGGGCGCCCCCCATGCT GCTGCAGCCCGCGCCGTGCGCCCCGAGCGCGGGCTTCCCGCGGCCCCTGGCCGCCCCCGGCGCCATGCACGGCTCGCAGAAGGACACCAC GTTCACCAAGATCTTCGTGGGCGGCCTGCCGTACCACACTACCGACGCCTCGCTCAGGAAGTACTTCGAGGGCTTCGGCGACATCGAGGA GGCCGTGGTCATCACCGACCGCCAGACGGGCAAGTCCCGCGGCTACGGCTTCGTGACCATGGCCGACCGGGCGGCAGCTGAGAGGGCTTG CAAAGACCCGAACCCCATCATCGACGGCCGCAAGGCCAACGTGAACCTGGCATATCTGGGCGCCAAGCCGCGGAGCCTCCAGACGGGCTT TGCCATTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGACTTACGGAAAATTGGCCCTGAAACACCATCCAGACAAGAATCCAGA TGATCCAGCTGCTACTGAGAAGTTTAAAGAAATCAACAACGCCCACGCAATACTTACCGACATTTCAAAGAGAAGCATATACGACAAGTA CGGATCGCTGGGACTCTACGTGGCCGAGCAGTTTGGAGACGAAAACGTTAACACCTACTTCATGCTGTCGAGCTGGTGGGCAAAGGCCCT GTTTGTCATCGTTGGCCTCTTGACGGGCTGCTACTTTTGCTGCTGCCTGTGCTGCTGCTGCAACTGCTGCTGTGGACACTGCCGGCCCGA GTCATCAGTGCCAGAAGAGGACTTCTATGTGTCCCCAGAGGATCTGGAGGAGCAGATCAAGTCTGACATGGAAAAAGATGTGGACTTTCC AGTTTTTCTCCAGCCTACAAATGCAAATGAGAAAACACAGCTAATCAAAGAAGGATCTCGAAGTTATTGCACAGACTCTTGATATTGAGC CCTCAGAGAGTCCACAGTCCCTCCTCTCAGTTCAGTCTTGTCTCCAGATGGTCGTAGGGGAGCGTGTGGGGCATAAAGTGCTGTGAACTT TTCCATCTTGTTGTTTTATTTTTGGGTTAGGAAAACATGATTGCTATATAATTTTCTCAGTATGCAGACTTTCTCTCTGAGTAGAATTTC TTATGAAACACATTCAATTTGGGTGAATAAAGGCCTGAAGAGTTATTTTACCCTCCTTGCCTGATGTAGGACAGTGGAATTGTACAGCCT TTATGAACCTGCCCTTTATGTGTGGCAGATCTGATTCCTAACTGACCAAAGTAATATTCCAGAACAAAAGCCACTTTTCTTACATTTAAC ACAATATTCATATCTACCACGAACATGATCATCAAAATATATGAGAACTTATAAAGAGTTTTTGTGTGTGGAGCCTCTTCCGTGTCAATA TTCAATAAAGTTATAGAAATGTTTCAA >72865_72865_1_RBM38-DNAJC5B_RBM38_chr20_55968389_ENST00000356208_DNAJC5B_chr8_66988895_ENST00000276570_length(amino acids)=330AA_BP=171 MDGRPSLPRALPAAPHERSPARPGSVGGGAPPMLLQPAPCAPSAGFPRPLAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFG DIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFAIGVQQLHPTLIQRTYGKLALKHHPD KNPDDPAATEKFKEINNAHAILTDISKRSIYDKYGSLGLYVAEQFGDENVNTYFMLSSWWAKALFVIVGLLTGCYFCCCLCCCCNCCCGH CRPESSVPEEDFYVSPEDLEEQIKSDMEKDVDFPVFLQPTNANEKTQLIKEGSRSYCTDS -------------------------------------------------------------- >72865_72865_2_RBM38-DNAJC5B_RBM38_chr20_55968389_ENST00000371219_DNAJC5B_chr8_66988895_ENST00000276570_length(transcript)=1408nt_BP=442nt ATAAACATCAGCTTAAGTAAAAACGTCTTGAAGACACTTTCCTGCTTACCTTCCAAGCATAGCGTCGCAAACTCCTTCTCAGAGGAAAGT CTCGGCCCTCACTGGTGGGCAAGTCCAGGCGGCCCCCCAAGCTCCCTTCGGGGTTCATTTTTGCCCTATCCCCGCAGGGGATTATTTTTG TCCTTGAAGGCCACATTTCCCAGGCCTTGAACTTTGACGGGAGGAGCTGGAATCCAGGAGGCATCTTTGTGGGAGAGCCCCAGGTGACCA TGGCCGACCGGGCGGCAGCTGAGAGGGCTTGCAAAGACCCGAACCCCATCATCGACGGCCGCAAGGCCAACGTGAACCTGGCATATCTGG GCGCCAAGCCGCGGAGCCTCCAGACGGGCTTTGCCATTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGACTTACGGAAAATTGG CCCTGAAACACCATCCAGACAAGAATCCAGATGATCCAGCTGCTACTGAGAAGTTTAAAGAAATCAACAACGCCCACGCAATACTTACCG ACATTTCAAAGAGAAGCATATACGACAAGTACGGATCGCTGGGACTCTACGTGGCCGAGCAGTTTGGAGACGAAAACGTTAACACCTACT TCATGCTGTCGAGCTGGTGGGCAAAGGCCCTGTTTGTCATCGTTGGCCTCTTGACGGGCTGCTACTTTTGCTGCTGCCTGTGCTGCTGCT GCAACTGCTGCTGTGGACACTGCCGGCCCGAGTCATCAGTGCCAGAAGAGGACTTCTATGTGTCCCCAGAGGATCTGGAGGAGCAGATCA AGTCTGACATGGAAAAAGATGTGGACTTTCCAGTTTTTCTCCAGCCTACAAATGCAAATGAGAAAACACAGCTAATCAAAGAAGGATCTC GAAGTTATTGCACAGACTCTTGATATTGAGCCCTCAGAGAGTCCACAGTCCCTCCTCTCAGTTCAGTCTTGTCTCCAGATGGTCGTAGGG GAGCGTGTGGGGCATAAAGTGCTGTGAACTTTTCCATCTTGTTGTTTTATTTTTGGGTTAGGAAAACATGATTGCTATATAATTTTCTCA GTATGCAGACTTTCTCTCTGAGTAGAATTTCTTATGAAACACATTCAATTTGGGTGAATAAAGGCCTGAAGAGTTATTTTACCCTCCTTG CCTGATGTAGGACAGTGGAATTGTACAGCCTTTATGAACCTGCCCTTTATGTGTGGCAGATCTGATTCCTAACTGACCAAAGTAATATTC CAGAACAAAAGCCACTTTTCTTACATTTAACACAATATTCATATCTACCACGAACATGATCATCAAAATATATGAGAACTTATAAAGAGT TTTTGTGTGTGGAGCCTCTTCCGTGTCAATATTCAATAAAGTTATAGAAATGTTTCAA >72865_72865_2_RBM38-DNAJC5B_RBM38_chr20_55968389_ENST00000371219_DNAJC5B_chr8_66988895_ENST00000276570_length(amino acids)=273AA_BP=114 MVGKSRRPPKLPSGFIFALSPQGIIFVLEGHISQALNFDGRSWNPGGIFVGEPQVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKP RSLQTGFAIGVQQLHPTLIQRTYGKLALKHHPDKNPDDPAATEKFKEINNAHAILTDISKRSIYDKYGSLGLYVAEQFGDENVNTYFMLS SWWAKALFVIVGLLTGCYFCCCLCCCCNCCCGHCRPESSVPEEDFYVSPEDLEEQIKSDMEKDVDFPVFLQPTNANEKTQLIKEGSRSYC TDS -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for RBM38-DNAJC5B |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for RBM38-DNAJC5B |
![]() (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for RBM38-DNAJC5B |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |