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in Kim Lab

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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:BLMH-ABCA9 (FusionGDB2 ID:HG642TG10350)

Fusion Gene Summary for BLMH-ABCA9

check button Fusion gene summary
Fusion gene informationFusion gene name: BLMH-ABCA9
Fusion gene ID: hg642tg10350
HgeneTgene
Gene symbol

BLMH

ABCA9

Gene ID

642

10350

Gene namebleomycin hydrolaseATP binding cassette subfamily A member 9
SynonymsBH|BMHEST640918
Cytomap('BLMH')('ABCA9')

17q11.2

17q24.2

Type of geneprotein-codingprotein-coding
Descriptionbleomycin hydrolaseBLM hydrolaseATP-binding cassette sub-family A member 9ATP-binding cassette A9ATP-binding cassette, sub-family A (ABC1), member 9
Modification date2020031320200313
UniProtAcc

Q13867

Q8IUA7

Ensembl transtripts involved in fusion geneENST00000261714, ENST00000394819, 
ENST00000582669, 
Fusion gene scores* DoF score5 X 5 X 3=756 X 5 X 4=120
# samples 56
** MAII scorelog2(5/75*10)=-0.584962500721156
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(6/120*10)=-1
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: BLMH [Title/Abstract] AND ABCA9 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointBLMH(28612406)-ABCA9(66992155), # samples:3
Anticipated loss of major functional domain due to fusion event.BLMH-ABCA9 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
BLMH-ABCA9 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
BLMH-ABCA9 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
BLMH-ABCA9 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
BLMH-ABCA9 seems lost the major protein functional domain in Tgene partner, which is a IUPHAR drug target due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check buttonFusion gene breakpoints across BLMH (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure
check buttonFusion gene breakpoints across ABCA9 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4SARCTCGA-QQ-A5VA-01ABLMHchr17

28612406

-ABCA9chr17

66992155

-


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Fusion Gene ORF analysis for BLMH-ABCA9

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-intronENST00000261714ENST00000482072BLMHchr17

28612406

-ABCA9chr17

66992155

-
5CDS-intronENST00000261714ENST00000495634BLMHchr17

28612406

-ABCA9chr17

66992155

-
5CDS-intronENST00000394819ENST00000482072BLMHchr17

28612406

-ABCA9chr17

66992155

-
5CDS-intronENST00000394819ENST00000495634BLMHchr17

28612406

-ABCA9chr17

66992155

-
5UTR-3CDSENST00000582669ENST00000340001BLMHchr17

28612406

-ABCA9chr17

66992155

-
5UTR-3CDSENST00000582669ENST00000370732BLMHchr17

28612406

-ABCA9chr17

66992155

-
5UTR-3CDSENST00000582669ENST00000453985BLMHchr17

28612406

-ABCA9chr17

66992155

-
5UTR-intronENST00000582669ENST00000482072BLMHchr17

28612406

-ABCA9chr17

66992155

-
5UTR-intronENST00000582669ENST00000495634BLMHchr17

28612406

-ABCA9chr17

66992155

-
Frame-shiftENST00000394819ENST00000340001BLMHchr17

28612406

-ABCA9chr17

66992155

-
Frame-shiftENST00000394819ENST00000370732BLMHchr17

28612406

-ABCA9chr17

66992155

-
Frame-shiftENST00000394819ENST00000453985BLMHchr17

28612406

-ABCA9chr17

66992155

-
In-frameENST00000261714ENST00000340001BLMHchr17

28612406

-ABCA9chr17

66992155

-
In-frameENST00000261714ENST00000370732BLMHchr17

28612406

-ABCA9chr17

66992155

-
In-frameENST00000261714ENST00000453985BLMHchr17

28612406

-ABCA9chr17

66992155

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000261714BLMHchr1728612406-ENST00000340001ABCA9chr1766992155-36878201362259707
ENST00000261714BLMHchr1728612406-ENST00000453985ABCA9chr1766992155-35438201362259707
ENST00000261714BLMHchr1728612406-ENST00000370732ABCA9chr1766992155-34478201361692518

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000261714ENST00000340001BLMHchr1728612406-ABCA9chr1766992155-0.0013193850.99868065
ENST00000261714ENST00000453985BLMHchr1728612406-ABCA9chr1766992155-0.0016255840.99837434
ENST00000261714ENST00000370732BLMHchr1728612406-ABCA9chr1766992155-0.0012614880.9987386

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Fusion Genomic Features for BLMH-ABCA9


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

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Fusion Protein Features for BLMH-ABCA9


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr17:28612406/chr17:66992155)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
BLMH

Q13867

ABCA9

Q8IUA7

FUNCTION: The normal physiological role of BLM hydrolase is unknown, but it catalyzes the inactivation of the antitumor drug BLM (a glycopeptide) by hydrolyzing the carboxamide bond of its B-aminoalaninamide moiety thus protecting normal and malignant cells from BLM toxicity. {ECO:0000250}.FUNCTION: Transporter that may play a role in monocyte differentiation and lipid transport and homeostasis. {ECO:0000305|PubMed:12150964}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneABCA9chr17:28612406chr17:66992155ENST0000034000124391288_152111451625.0DomainABC transporter 2
TgeneABCA9chr17:28612406chr17:66992155ENST0000037073224381288_152111451790.0DomainABC transporter 2
TgeneABCA9chr17:28612406chr17:66992155ENST00000495634061288_15210268.0DomainABC transporter 2
TgeneABCA9chr17:28612406chr17:66992155ENST0000049563406481_7160268.0DomainABC transporter 1
TgeneABCA9chr17:28612406chr17:66992155ENST0000034000124391326_133311451625.0Nucleotide bindingATP 2
TgeneABCA9chr17:28612406chr17:66992155ENST0000037073224381326_133311451790.0Nucleotide bindingATP 2
TgeneABCA9chr17:28612406chr17:66992155ENST00000495634061326_13330268.0Nucleotide bindingATP 2
TgeneABCA9chr17:28612406chr17:66992155ENST0000049563406517_5240268.0Nucleotide bindingATP 1
TgeneABCA9chr17:28612406chr17:66992155ENST0000034000124391163_118311451625.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST0000034000124391200_122011451625.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST0000037073224381163_118311451790.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST0000037073224381200_122011451790.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST00000495634061026_10460268.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST00000495634061065_10850268.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST00000495634061108_11280268.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST00000495634061136_11560268.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST00000495634061163_11830268.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST00000495634061200_12200268.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST0000049563406221_2430268.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST0000049563406269_2890268.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST0000049563406300_3200268.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST000004956340631_510268.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST0000049563406329_3490268.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST0000049563406354_3740268.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST0000049563406398_4180268.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST0000049563406864_8840268.0TransmembraneHelical

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneABCA9chr17:28612406chr17:66992155ENST000003400012439481_71611451625.0DomainABC transporter 1
TgeneABCA9chr17:28612406chr17:66992155ENST000003707322438481_71611451790.0DomainABC transporter 1
TgeneABCA9chr17:28612406chr17:66992155ENST000003400012439517_52411451625.0Nucleotide bindingATP 1
TgeneABCA9chr17:28612406chr17:66992155ENST000003707322438517_52411451790.0Nucleotide bindingATP 1
TgeneABCA9chr17:28612406chr17:66992155ENST0000034000124391026_104611451625.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST0000034000124391065_108511451625.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST0000034000124391108_112811451625.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST0000034000124391136_115611451625.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST000003400012439221_24311451625.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST000003400012439269_28911451625.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST000003400012439300_32011451625.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST00000340001243931_5111451625.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST000003400012439329_34911451625.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST000003400012439354_37411451625.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST000003400012439398_41811451625.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST000003400012439864_88411451625.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST0000037073224381026_104611451790.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST0000037073224381065_108511451790.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST0000037073224381108_112811451790.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST0000037073224381136_115611451790.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST000003707322438221_24311451790.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST000003707322438269_28911451790.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST000003707322438300_32011451790.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST00000370732243831_5111451790.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST000003707322438329_34911451790.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST000003707322438354_37411451790.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST000003707322438398_41811451790.0TransmembraneHelical
TgeneABCA9chr17:28612406chr17:66992155ENST000003707322438864_88411451790.0TransmembraneHelical


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Fusion Gene Sequence for BLMH-ABCA9


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>9798_9798_1_BLMH-ABCA9_BLMH_chr17_28612406_ENST00000261714_ABCA9_chr17_66992155_ENST00000340001_length(transcript)=3687nt_BP=820nt
AGCCTCAGCCTCCCCGCCGCCGCCGCCGCCGCCGCCGCCGAGCCGGTTTCCTTTTTCCGGCGCTCCGGGTGCGAGAGACAGGTCGGGCCC
CCTAGGCAGCGAGCCGCAGCGCAATCCCGGCGCTCGCCCAAGGACCCTGGAAGCTACCGTTACCCCGCCGGGCAGCGTGGGCGCCATGAG
CAGCTCGGGACTGAATTCGGAGAAGGTAGCTGCTCTGATACAGAAACTGAATTCCGACCCCCAGTTCGTACTTGCCCAGAATGTCGGGAC
CACCCACGACCTGCTGGACATCTGTCTGAAGCGGGCCACGGTGCAGCGCGCGCAGCATGTGTTCCAGCACGCCGTGCCCCAGGAGGGCAA
GCCAATCACCAACCAGAAGAGCTCAGGGCGATGCTGGATCTTTTCTTGTCTGAATGTTATGAGGCTTCCATTCATGAAAAAGTTAAATAT
TGAAGAATTTGAGTTTAGCCAATCTTACCTGTTTTTTTGGGACAAGGTTGAACGCTGTTATTTCTTCTTGAGTGCTTTTGTGGACACAGC
CCAGAGAAAGGAGCCTGAGGATGGGAGGCTGGTGCAGTTTTTGCTTATGAACCCTGCAAATGATGGTGGCCAATGGGATATGCTTGTTAA
TATTGTTGAAAAATATGGTGTTATCCCTAAGAAATGCTTCCCTGAATCTTATACAACAGAGGCAACCAGAAGGATGAATGATATTCTGAA
TCACAAGATGAGAGAATTCTGTATACGACTGCGGAACCTGGTACACAGTGGAGCAACCAAAGGAGAAATCTCGGCCACACAGGACGTCAT
GATGGAGGAGGTGGTCATCTTCTCGATAGTTGCTACTGATCTAAATGAATATGGATTTCTAGGGCTATTTTTTGGCACCATGTTAATACC
TCCCTTCACATTGATTGGCTCTCTATTCATTTTTTCTGAGATTTCTCCTGATTCCATGGATTACTTAGGAGCTTCAGAATCTGAAATTGT
ATACCTGGCACTGCTAATACCTTACCTTCATTTTCTCATTTTTCTTTTCATTCTGCGATGCCTAGAAATGAACTGCAGGAAGAAACTAAT
GAGAAAGGATCCTGTGTTCAGAATTTCTCCAAGAAGCAACGCTATTTTTCCAAACCCAGAAGAGCCTGAAGGAGAGGAGGAAGATATCCA
GATGGAAAGAATGAGAACAGTGAATGCTATGGCTGTGCGAGACTTTGATGAGACACCCGTCATCATTGCCAGCTGTCTACGGAAGGAATA
TGCAGGCAAAAAGAAAAATTGCTTTTCTAAAAGGAAGAAAAAAATTGCCACAAGAAATGTCTCTTTTTGTGTTAAAAAAGGTGAAGTTAT
AGGACTGTTAGGACACAATGGAGCTGGTAAAAGTACAACTATTAAGATGATAACTGGAGACACAAAACCAACTGCAGGACAGGTGATTTT
GAAAGGGAGCGGTGGAGGGGAACCCCTGGGCTTCCTGGGGTACTGCCCTCAGGAGAATGCGCTGTGGCCCAACCTGACAGTGAGGCAGCA
CCTGGAGGTGTACGCTGCCGTGAAAGGTCTCAGGAAAGGGGACGCAATGATCGCCATCACACGGTTAGTGGATGCGCTCAAGCTGCAGGA
CCAGCTGAAGGCTCCCGTGAAGACCTTGTCAGAGGGAATAAAGCGAAAGCTGTGCTTTGTGCTGAGCATCCTGGGGAACCCGTCAGTGGT
GCTTCTGGATGAGCCGTCGACCGGGATGGACCCCGAGGGGCAGCAGCAAATGTGGCAGGTGATTCGGGCCACCTTTAGAAACACGGAGAG
GGGCGCCCTCCTGACCACCCACTACATGGCAGAGGCTGAGGCGGTGTGTGACCGAGTGGCCATCATGGTGTCAGGAAGGCTGAGATGTAT
TGGTTCCATCCAACACCTGAAAAGCAAATTTGGCAAAGACTACCTGCTGGAGATGAAGCTGAAGAACCTGGCACAAATGGAGCCCCTCCA
TGCAGAGATCCTGAGGCTTTTCCCCCAGGCTGCTCAGCAGGAAAGGTTCTCCTCCCTGATGGTCTATAAGTTGCCTGTTGAGGATGTGCG
ACCTTTATCACAGGCTTTCTTCAAATTAGAGATAGTTAAACAGAGTTTCGACCTGGAGGAGTACAGCCTCTCACAGTCTACCCTGGAGCA
GGTTTTCCTGGAGCTCTCCAAGGAGCAGGAGCTGGGTGATCTTGAAGAGGACTTTGATCCCTCGGTGAAGTGGAAACTCCTCCTGCAGGA
AGAGCCTTAAAGCTCCAAATACCCTATATCTTTCTTTAATCCTGTGACTCTTTTAAAGATAATATTTTATAGCCTTAATATGCCTTATAT
CAGAGGTGGTACAAAATGCATTTGAAACTCATGCAATAATTATCCTCAGTAGTATTTCTTACAGTGAGACAACAGGCGATGTCAGTGAGG
GCGATCATAGGGCATAAGCCTAAGCCATACCATGCAGCCTTTGTGCCAGCAACCAAATCCCATGTTTCCTACTGTGTTAAGTTTAAAAAT
GCATTTATTATAGAATTGTCTACATTTCTGAGGATGTCATGGAGAATGCTTAATTTTCTTTCTCTGAACTTCAAAATATTAAATATTTTC
TTATTTATTTTTTTGATTAAAGTATAAATTAAGACACCCTATTGACTTCCGGGTAAGGGGAGTCAATTGATTACCCAGCAGCACAGTATT
TGCTTTTTATAATTCCCTTTTTAAATACTTGTTCTTAATTCACTGGTTTTCCTTTTCTGTCATTTTTCAGAGTTTAGATTGTGAGTCCAT
GTTTTGTCTGTTGTGCCTATAAAGGAAATTTGAAATCTGTATCATTCTACTATAAAGACACATGCACACGTATGTTTATTGCAGCACTGT
TTACAATAGCAAAGACTTGGAACCAACCAAAATACCCACAAATGATAGACCGGATAAAGAAAACGTGACACATATACACCATGGAATACT
ATGCAGCCATAGAAAAGGATGAGTTCATATTCTTCACAGGGACATGGATGAAGCTGGAAACCATCATCCTCAGCAAACTAACACAGGAAC
AGAAAACCAAACACCGCATGTTCTCACTCATAAGTGGGAATTGAACAATGAGAATACATGGACACAGGGAGGGGAACACCACACCCTGGG
GCCTGTTGGGGGGATGGGGGCTAGGGGAGGGATAGCATTAGGAGAAATACCTGATGTAGATGATGGGTTGATGGGTGCAGCAAAGTACCA
TGGCACATGTATACCTGTGTAACAAACCTGCACATTCAGCACATGTATCCCAGAACTTAAAGTATAATAAAAATAAATAAATAATTTCAG
TAAGAACCTGATCAAGTTGAACATGTATATATATGTTATACACAAGTTTGAAACATATTTCTGTTTTTATATGTTTTCTTATGATGCAAG
GGCATACTCTTATGCAAATAATTAAAACTTCATAGGTCTTAATTTCCCATATCTCTATATATTATTATGACCTATCCAACTGGTAACCCT
ATGAACACCTTAAAATAAACTTGTATACTCTTATTTAGGTGAGTTTTTCTTGTTAATACTATTATTATTGCTATCTAATTGAATACTTGA

>9798_9798_1_BLMH-ABCA9_BLMH_chr17_28612406_ENST00000261714_ABCA9_chr17_66992155_ENST00000340001_length(amino acids)=707AA_BP=228
MEATVTPPGSVGAMSSSGLNSEKVAALIQKLNSDPQFVLAQNVGTTHDLLDICLKRATVQRAQHVFQHAVPQEGKPITNQKSSGRCWIFS
CLNVMRLPFMKKLNIEEFEFSQSYLFFWDKVERCYFFLSAFVDTAQRKEPEDGRLVQFLLMNPANDGGQWDMLVNIVEKYGVIPKKCFPE
SYTTEATRRMNDILNHKMREFCIRLRNLVHSGATKGEISATQDVMMEEVVIFSIVATDLNEYGFLGLFFGTMLIPPFTLIGSLFIFSEIS
PDSMDYLGASESEIVYLALLIPYLHFLIFLFILRCLEMNCRKKLMRKDPVFRISPRSNAIFPNPEEPEGEEEDIQMERMRTVNAMAVRDF
DETPVIIASCLRKEYAGKKKNCFSKRKKKIATRNVSFCVKKGEVIGLLGHNGAGKSTTIKMITGDTKPTAGQVILKGSGGGEPLGFLGYC
PQENALWPNLTVRQHLEVYAAVKGLRKGDAMIAITRLVDALKLQDQLKAPVKTLSEGIKRKLCFVLSILGNPSVVLLDEPSTGMDPEGQQ
QMWQVIRATFRNTERGALLTTHYMAEAEAVCDRVAIMVSGRLRCIGSIQHLKSKFGKDYLLEMKLKNLAQMEPLHAEILRLFPQAAQQER

--------------------------------------------------------------
>9798_9798_2_BLMH-ABCA9_BLMH_chr17_28612406_ENST00000261714_ABCA9_chr17_66992155_ENST00000370732_length(transcript)=3447nt_BP=820nt
AGCCTCAGCCTCCCCGCCGCCGCCGCCGCCGCCGCCGCCGAGCCGGTTTCCTTTTTCCGGCGCTCCGGGTGCGAGAGACAGGTCGGGCCC
CCTAGGCAGCGAGCCGCAGCGCAATCCCGGCGCTCGCCCAAGGACCCTGGAAGCTACCGTTACCCCGCCGGGCAGCGTGGGCGCCATGAG
CAGCTCGGGACTGAATTCGGAGAAGGTAGCTGCTCTGATACAGAAACTGAATTCCGACCCCCAGTTCGTACTTGCCCAGAATGTCGGGAC
CACCCACGACCTGCTGGACATCTGTCTGAAGCGGGCCACGGTGCAGCGCGCGCAGCATGTGTTCCAGCACGCCGTGCCCCAGGAGGGCAA
GCCAATCACCAACCAGAAGAGCTCAGGGCGATGCTGGATCTTTTCTTGTCTGAATGTTATGAGGCTTCCATTCATGAAAAAGTTAAATAT
TGAAGAATTTGAGTTTAGCCAATCTTACCTGTTTTTTTGGGACAAGGTTGAACGCTGTTATTTCTTCTTGAGTGCTTTTGTGGACACAGC
CCAGAGAAAGGAGCCTGAGGATGGGAGGCTGGTGCAGTTTTTGCTTATGAACCCTGCAAATGATGGTGGCCAATGGGATATGCTTGTTAA
TATTGTTGAAAAATATGGTGTTATCCCTAAGAAATGCTTCCCTGAATCTTATACAACAGAGGCAACCAGAAGGATGAATGATATTCTGAA
TCACAAGATGAGAGAATTCTGTATACGACTGCGGAACCTGGTACACAGTGGAGCAACCAAAGGAGAAATCTCGGCCACACAGGACGTCAT
GATGGAGGAGGTGGTCATCTTCTCGATAGTTGCTACTGATCTAAATGAATATGGATTTCTAGGGCTATTTTTTGGCACCATGTTAATACC
TCCCTTCACATTGATTGGCTCTCTATTCATTTTTTCTGAGATTTCTCCTGATTCCATGGATTACTTAGGAGCTTCAGAATCTGAAATTGT
ATACCTGGCACTGCTAATACCTTACCTTCATTTTCTCATTTTTCTTTTCATTCTGCGATGCCTAGAAATGAACTGCAGGAAGAAACTAAT
GAGAAAGGATCCTGTGTTCAGAATTTCTCCAAGAAGCAACGCTATTTTTCCAAACCCAGAAGAGCCTGAAGGAGAGGAGGAAGATATCCA
GATGGAAAGAATGAGAACAGTGAATGCTATGGCTGTGCGAGACTTTGATGAGACACCCGTCATCATTGCCAGCTGTCTACGGAAGGAATA
TGCAGGCAAAAAGAAAAATTGCTTTTCTAAAAGGAAGAAAAAAATTGCCACAAGAAATGTCTCTTTTTGTGTTAAAAAAGGTGAAGTTAT
AGGACTGTTAGGACACAATGGAGCTGGTAAAAGTACAACTATTAAGATGATAACTGGAGACACAAAACCAACTGCAGGACAGGTGATTTT
GAAAGGGAGCGGTGGAGGGGAACCCCTGGGCTTCCTGGGGTACTGCCCTCAGGAGAATGCGCTGTGGCCCAACCTGACAGTGAGGCAGCA
CCTGGAGGTGTACGCTGCCGTGAAAGGTCTCAGGAAAGGGGACGCAATGATCGCCATCACACGGTTAGTGGATGCGCTCAAGCTGCAGGA
CCAGCTGAAGGCTCCCGTGAAGACCTTGTCAGAGGGAATAAAGCGAAAGGCAGGTGATTCGGGCCACCTTTAGAAACACGGAGAGGGGCG
CCCTCCTGACCACCCACTACATGGCAGAGGCTGAGGCGGTGTGTGACCGAGTGGCCATCATGGTGTCAGGAAGGCTGAGATGTATTGGTT
CCATCCAACACCTGAAAAGCAAATTTGGCAAAGACTACCTGCTGGAGATGAAGCTGAAGAACCTGGCACAAATGGAGCCCCTCCATGCAG
AGATCCTGAGGCTTTTCCCCCAGGCTGCTCAGCAGGAAAGGTTCTCCTCCCTGATGGTCTATAAGTTGCCTGTTGAGGATGTGCGACCTT
TATCACAGGCTTTCTTCAAATTAGAGATAGTTAAACAGAGTTTCGACCTGGAGGAGTACAGCCTCTCACAGTCTACCCTGGAGCAGGTTT
TCCTGGAGCTCTCCAAGGAGCAGGAGCTGGGTGATCTTGAAGAGGACTTTGATCCCTCGGTGAAGTGGAAACTCCTCCTGCAGGAAGAGC
CTTAAAGCTCCAAATACCCTATATCTTTCTTTAATCCTGTGACTCTTTTAAAGATAATATTTTATAGCCTTAATATGCCTTATATCAGAG
GTGGTACAAAATGCATTTGAAACTCATGCAATAATTATCCTCAGTAGTATTTCTTACAGTGAGACAACAGGCGATGTCAGTGAGGGCGAT
CATAGGGCATAAGCCTAAGCCATACCATGCAGCCTTTGTGCCAGCAACCAAATCCCATGTTTCCTACTGTGTTAAGTTTAAAAATGCATT
TATTATAGAATTGTCTACATTTCTGAGGATGTCATGGAGAATGCTTAATTTTCTTTCTCTGAACTTCAAAATATTAAATATTTTCTTATT
TATTTTTTTGATTAAAGTATAAATTAAGACACCCTATTGACTTCCGGGTAAGGGGAGTCAATTGATTACCCAGCAGCACAGTATTTGCTT
TTTATAATTCCCTTTTTAAATACTTGTTCTTAATTCACTGGTTTTCCTTTTCTGTCATTTTTCAGAGTTTAGATTGTGAGTCCATGTTTT
GTCTGTTGTGCCTATAAAGGAAATTTGAAATCTGTATCATTCTACTATAAAGACACATGCACACGTATGTTTATTGCAGCACTGTTTACA
ATAGCAAAGACTTGGAACCAACCAAAATACCCACAAATGATAGACCGGATAAAGAAAACGTGACACATATACACCATGGAATACTATGCA
GCCATAGAAAAGGATGAGTTCATATTCTTCACAGGGACATGGATGAAGCTGGAAACCATCATCCTCAGCAAACTAACACAGGAACAGAAA
ACCAAACACCGCATGTTCTCACTCATAAGTGGGAATTGAACAATGAGAATACATGGACACAGGGAGGGGAACACCACACCCTGGGGCCTG
TTGGGGGGATGGGGGCTAGGGGAGGGATAGCATTAGGAGAAATACCTGATGTAGATGATGGGTTGATGGGTGCAGCAAAGTACCATGGCA
CATGTATACCTGTGTAACAAACCTGCACATTCAGCACATGTATCCCAGAACTTAAAGTATAATAAAAATAAATAAATAATTTCAGTAAGA
ACCTGATCAAGTTGAACATGTATATATATGTTATACACAAGTTTGAAACATATTTCTGTTTTTATATGTTTTCTTATGATGCAAGGGCAT
ACTCTTATGCAAATAATTAAAACTTCATAGGTCTTAATTTCCCATATCTCTATATATTATTATGACCTATCCAACTGGTAACCCTATGAA

>9798_9798_2_BLMH-ABCA9_BLMH_chr17_28612406_ENST00000261714_ABCA9_chr17_66992155_ENST00000370732_length(amino acids)=518AA_BP=228
MEATVTPPGSVGAMSSSGLNSEKVAALIQKLNSDPQFVLAQNVGTTHDLLDICLKRATVQRAQHVFQHAVPQEGKPITNQKSSGRCWIFS
CLNVMRLPFMKKLNIEEFEFSQSYLFFWDKVERCYFFLSAFVDTAQRKEPEDGRLVQFLLMNPANDGGQWDMLVNIVEKYGVIPKKCFPE
SYTTEATRRMNDILNHKMREFCIRLRNLVHSGATKGEISATQDVMMEEVVIFSIVATDLNEYGFLGLFFGTMLIPPFTLIGSLFIFSEIS
PDSMDYLGASESEIVYLALLIPYLHFLIFLFILRCLEMNCRKKLMRKDPVFRISPRSNAIFPNPEEPEGEEEDIQMERMRTVNAMAVRDF
DETPVIIASCLRKEYAGKKKNCFSKRKKKIATRNVSFCVKKGEVIGLLGHNGAGKSTTIKMITGDTKPTAGQVILKGSGGGEPLGFLGYC

--------------------------------------------------------------
>9798_9798_3_BLMH-ABCA9_BLMH_chr17_28612406_ENST00000261714_ABCA9_chr17_66992155_ENST00000453985_length(transcript)=3543nt_BP=820nt
AGCCTCAGCCTCCCCGCCGCCGCCGCCGCCGCCGCCGCCGAGCCGGTTTCCTTTTTCCGGCGCTCCGGGTGCGAGAGACAGGTCGGGCCC
CCTAGGCAGCGAGCCGCAGCGCAATCCCGGCGCTCGCCCAAGGACCCTGGAAGCTACCGTTACCCCGCCGGGCAGCGTGGGCGCCATGAG
CAGCTCGGGACTGAATTCGGAGAAGGTAGCTGCTCTGATACAGAAACTGAATTCCGACCCCCAGTTCGTACTTGCCCAGAATGTCGGGAC
CACCCACGACCTGCTGGACATCTGTCTGAAGCGGGCCACGGTGCAGCGCGCGCAGCATGTGTTCCAGCACGCCGTGCCCCAGGAGGGCAA
GCCAATCACCAACCAGAAGAGCTCAGGGCGATGCTGGATCTTTTCTTGTCTGAATGTTATGAGGCTTCCATTCATGAAAAAGTTAAATAT
TGAAGAATTTGAGTTTAGCCAATCTTACCTGTTTTTTTGGGACAAGGTTGAACGCTGTTATTTCTTCTTGAGTGCTTTTGTGGACACAGC
CCAGAGAAAGGAGCCTGAGGATGGGAGGCTGGTGCAGTTTTTGCTTATGAACCCTGCAAATGATGGTGGCCAATGGGATATGCTTGTTAA
TATTGTTGAAAAATATGGTGTTATCCCTAAGAAATGCTTCCCTGAATCTTATACAACAGAGGCAACCAGAAGGATGAATGATATTCTGAA
TCACAAGATGAGAGAATTCTGTATACGACTGCGGAACCTGGTACACAGTGGAGCAACCAAAGGAGAAATCTCGGCCACACAGGACGTCAT
GATGGAGGAGGTGGTCATCTTCTCGATAGTTGCTACTGATCTAAATGAATATGGATTTCTAGGGCTATTTTTTGGCACCATGTTAATACC
TCCCTTCACATTGATTGGCTCTCTATTCATTTTTTCTGAGATTTCTCCTGATTCCATGGATTACTTAGGAGCTTCAGAATCTGAAATTGT
ATACCTGGCACTGCTAATACCTTACCTTCATTTTCTCATTTTTCTTTTCATTCTGCGATGCCTAGAAATGAACTGCAGGAAGAAACTAAT
GAGAAAGGATCCTGTGTTCAGAATTTCTCCAAGAAGCAACGCTATTTTTCCAAACCCAGAAGAGCCTGAAGGAGAGGAGGAAGATATCCA
GATGGAAAGAATGAGAACAGTGAATGCTATGGCTGTGCGAGACTTTGATGAGACACCCGTCATCATTGCCAGCTGTCTACGGAAGGAATA
TGCAGGCAAAAAGAAAAATTGCTTTTCTAAAAGGAAGAAAAAAATTGCCACAAGAAATGTCTCTTTTTGTGTTAAAAAAGGTGAAGTTAT
AGGACTGTTAGGACACAATGGAGCTGGTAAAAGTACAACTATTAAGATGATAACTGGAGACACAAAACCAACTGCAGGACAGGTGATTTT
GAAAGGGAGCGGTGGAGGGGAACCCCTGGGCTTCCTGGGGTACTGCCCTCAGGAGAATGCGCTGTGGCCCAACCTGACAGTGAGGCAGCA
CCTGGAGGTGTACGCTGCCGTGAAAGGTCTCAGGAAAGGGGACGCAATGATCGCCATCACACGGTTAGTGGATGCGCTCAAGCTGCAGGA
CCAGCTGAAGGCTCCCGTGAAGACCTTGTCAGAGGGAATAAAGCGAAAGCTGTGCTTTGTGCTGAGCATCCTGGGGAACCCGTCAGTGGT
GCTTCTGGATGAGCCGTCGACCGGGATGGACCCCGAGGGGCAGCAGCAAATGTGGCAGGTGATTCGGGCCACCTTTAGAAACACGGAGAG
GGGCGCCCTCCTGACCACCCACTACATGGCAGAGGCTGAGGCGGTGTGTGACCGAGTGGCCATCATGGTGTCAGGAAGGCTGAGATGTAT
TGGTTCCATCCAACACCTGAAAAGCAAATTTGGCAAAGACTACCTGCTGGAGATGAAGCTGAAGAACCTGGCACAAATGGAGCCCCTCCA
TGCAGAGATCCTGAGGCTTTTCCCCCAGGCTGCTCAGCAGGAAAGGTTCTCCTCCCTGATGGTCTATAAGTTGCCTGTTGAGGATGTGCG
ACCTTTATCACAGGCTTTCTTCAAATTAGAGATAGTTAAACAGAGTTTCGACCTGGAGGAGTACAGCCTCTCACAGTCTACCCTGGAGCA
GGTTTTCCTGGAGCTCTCCAAGGAGCAGGAGCTGGGTGATCTTGAAGAGGACTTTGATCCCTCGGTGAAGTGGAAACTCCTCCTGCAGGA
AGAGCCTTAAAGCTCCAAATACCCTATATCTTTCTTTAATCCTGTGACTCTTTTAAAGATAATATTTTATAGCCTTAATATGCCTTATAT
CAGAGGTGGTACAAAATGCATTTGAAACTCATGCAATAATTATCCTCAGTAGTATTTCTTACAGTGAGACAACAGGCGATGTCAGTGAGG
GCGATCATAGGGCATAAGCCTAAGCCATACCATGCAGCCTTTGTGCCAGCAACCAAATCCCATGTTTCCTACTGTGTTAAGTTTAAAAAT
GCATTTATTATAGAATTGTCTACATTTCTGAGGATGTCATGGAGAATGCTTAATTTTCTTTCTCTGAACTTCAAAATATTAAATATTTTC
TTATTTATTTTTTTGATTAAAGTATAAATTAAGACACCCTATTGACTTCCGGGTAAGGGGAGTCAATTGATTACCCAGCAGCACAGTATT
TGCTTTTTATAATTCCCTTTTTAAATACTTGTTCTTAATTCACTGGTTTTCCTTTTCTGTCATTTTTCAGAGTTTAGATTGTGAGTCCAT
GTTTTGTCTGTTGTGCCTATAAAGGAAATTTGAAATCTGTATCATTCTACTATAAAGACACATGCACACGTATGTTTATTGCAGCACTGT
TTACAATAGCAAAGACTTGGAACCAACCAAAATACCCACAAATGATAGACCGGATAAAGAAAACGTGACACATATACACCATGGAATACT
ATGCAGCCATAGAAAAGGATGAGTTCATATTCTTCACAGGGACATGGATGAAGCTGGAAACCATCATCCTCAGCAAACTAACACAGGAAC
AGAAAACCAAACACCGCATGTTCTCACTCATAAGTGGGAATTGAACAATGAGAATACATGGACACAGGGAGGGGAACACCACACCCTGGG
GCCTGTTGGGGGGATGGGGGCTAGGGGAGGGATAGCATTAGGAGAAATACCTGATGTAGATGATGGGTTGATGGGTGCAGCAAAGTACCA
TGGCACATGTATACCTGTGTAACAAACCTGCACATTCAGCACATGTATCCCAGAACTTAAAGTATAATAAAAATAAATAAATAATTTCAG
TAAGAACCTGATCAAGTTGAACATGTATATATATGTTATACACAAGTTTGAAACATATTTCTGTTTTTATATGTTTTCTTATGATGCAAG
GGCATACTCTTATGCAAATAATTAAAACTTCATAGGTCTTAATTTCCCATATCTCTATATATTATTATGACCTATCCAACTGGTAACCCT

>9798_9798_3_BLMH-ABCA9_BLMH_chr17_28612406_ENST00000261714_ABCA9_chr17_66992155_ENST00000453985_length(amino acids)=707AA_BP=228
MEATVTPPGSVGAMSSSGLNSEKVAALIQKLNSDPQFVLAQNVGTTHDLLDICLKRATVQRAQHVFQHAVPQEGKPITNQKSSGRCWIFS
CLNVMRLPFMKKLNIEEFEFSQSYLFFWDKVERCYFFLSAFVDTAQRKEPEDGRLVQFLLMNPANDGGQWDMLVNIVEKYGVIPKKCFPE
SYTTEATRRMNDILNHKMREFCIRLRNLVHSGATKGEISATQDVMMEEVVIFSIVATDLNEYGFLGLFFGTMLIPPFTLIGSLFIFSEIS
PDSMDYLGASESEIVYLALLIPYLHFLIFLFILRCLEMNCRKKLMRKDPVFRISPRSNAIFPNPEEPEGEEEDIQMERMRTVNAMAVRDF
DETPVIIASCLRKEYAGKKKNCFSKRKKKIATRNVSFCVKKGEVIGLLGHNGAGKSTTIKMITGDTKPTAGQVILKGSGGGEPLGFLGYC
PQENALWPNLTVRQHLEVYAAVKGLRKGDAMIAITRLVDALKLQDQLKAPVKTLSEGIKRKLCFVLSILGNPSVVLLDEPSTGMDPEGQQ
QMWQVIRATFRNTERGALLTTHYMAEAEAVCDRVAIMVSGRLRCIGSIQHLKSKFGKDYLLEMKLKNLAQMEPLHAEILRLFPQAAQQER

--------------------------------------------------------------

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Fusion Gene PPI Analysis for BLMH-ABCA9


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for BLMH-ABCA9


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for BLMH-ABCA9


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneC0009402Colorectal Carcinoma1CTD_human
TgeneC0009404Colorectal Neoplasms1CTD_human