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![]() | Fusion Gene Summary |
![]() | Fusion Gene ORF analysis |
![]() | Fusion Genomic Features |
![]() | Fusion Protein Features |
![]() | Fusion Gene Sequence |
![]() | Fusion Gene PPI analysis |
![]() | Related Drugs |
![]() | Related Diseases |
Fusion gene:SKIV2L-ABCA8 (FusionGDB2 ID:HG6499TG10351) |
Fusion Gene Summary for SKIV2L-ABCA8 |
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Fusion gene information | Fusion gene name: SKIV2L-ABCA8 | Fusion gene ID: hg6499tg10351 | Hgene | Tgene | Gene symbol | SKIV2L | ABCA8 | Gene ID | 6499 | 10351 |
Gene name | Ski2 like RNA helicase | ATP binding cassette subfamily A member 8 | |
Synonyms | 170A|DDX13|HLP|SKI2|SKI2W|SKIV2|SKIV2L1|THES2 | - | |
Cytomap | ('SKIV2L')('ABCA8') 6p21.33 | 17q24.2 | |
Type of gene | protein-coding | protein-coding | |
Description | helicase SKI2WSKI2 homolog, superkiller viralicidic activity 2-likehelicase-like proteinsuperkiller viralicidic activity 2-like | ATP-binding cassette sub-family A member 8ATP-binding cassette, sub-family A (ABC1), member 8 | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000375394, ENST00000544581, ENST00000383336, ENST00000412823, ENST00000421789, ENST00000429465, ENST00000448219, ENST00000461360, ENST00000466463, ENST00000471547, ENST00000476338, ENST00000480914, ENST00000488648, | ||
Fusion gene scores | * DoF score | 6 X 5 X 5=150 | 3 X 2 X 2=12 |
# samples | 6 | 3 | |
** MAII score | log2(6/150*10)=-1.32192809488736 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/12*10)=1.32192809488736 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: SKIV2L [Title/Abstract] AND ABCA8 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | SKIV2L(31934591)-ABCA8(66864316), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | SKIV2L-ABCA8 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. SKIV2L-ABCA8 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. SKIV2L-ABCA8 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. SKIV2L-ABCA8 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. SKIV2L-ABCA8 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. SKIV2L-ABCA8 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF. SKIV2L-ABCA8 seems lost the major protein functional domain in Tgene partner, which is a IUPHAR drug target due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
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Fusion Gene ORF analysis for SKIV2L-ABCA8 |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000375394 | ENST00000269080 | SKIV2L | chr6 | 31934591 | + | ABCA8 | chr17 | 66864316 | - | 0.001092714 | 0.9989073 |
ENST00000544581 | ENST00000269080 | SKIV2L | chr6 | 31934591 | + | ABCA8 | chr17 | 66864316 | - | 0.001945909 | 0.99805415 |
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Fusion Genomic Features for SKIV2L-ABCA8 |
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Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
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Fusion Protein Features for SKIV2L-ABCA8 |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr6:31934591/chr17:66864316) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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Hgene | Tgene |
. | . |
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000269080 | 0 | 38 | 1285_1518 | 0 | 1582.0 | Domain | ABC transporter 2 | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000269080 | 0 | 38 | 480_715 | 0 | 1582.0 | Domain | ABC transporter 1 | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000430352 | 0 | 38 | 1285_1518 | 0 | 1622.0 | Domain | ABC transporter 2 | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000430352 | 0 | 38 | 480_715 | 0 | 1622.0 | Domain | ABC transporter 1 | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000269080 | 0 | 38 | 1323_1330 | 0 | 1582.0 | Nucleotide binding | ATP 2 | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000269080 | 0 | 38 | 516_523 | 0 | 1582.0 | Nucleotide binding | ATP 1 | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000430352 | 0 | 38 | 1323_1330 | 0 | 1622.0 | Nucleotide binding | ATP 2 | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000430352 | 0 | 38 | 516_523 | 0 | 1622.0 | Nucleotide binding | ATP 1 | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000269080 | 0 | 38 | 1019_1039 | 0 | 1582.0 | Transmembrane | Helical | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000269080 | 0 | 38 | 1070_1090 | 0 | 1582.0 | Transmembrane | Helical | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000269080 | 0 | 38 | 1106_1126 | 0 | 1582.0 | Transmembrane | Helical | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000269080 | 0 | 38 | 1136_1156 | 0 | 1582.0 | Transmembrane | Helical | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000269080 | 0 | 38 | 1161_1181 | 0 | 1582.0 | Transmembrane | Helical | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000269080 | 0 | 38 | 1197_1217 | 0 | 1582.0 | Transmembrane | Helical | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000269080 | 0 | 38 | 220_240 | 0 | 1582.0 | Transmembrane | Helical | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000269080 | 0 | 38 | 268_288 | 0 | 1582.0 | Transmembrane | Helical | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000269080 | 0 | 38 | 299_319 | 0 | 1582.0 | Transmembrane | Helical | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000269080 | 0 | 38 | 30_50 | 0 | 1582.0 | Transmembrane | Helical | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000269080 | 0 | 38 | 327_347 | 0 | 1582.0 | Transmembrane | Helical | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000269080 | 0 | 38 | 359_379 | 0 | 1582.0 | Transmembrane | Helical | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000269080 | 0 | 38 | 397_417 | 0 | 1582.0 | Transmembrane | Helical | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000269080 | 0 | 38 | 864_884 | 0 | 1582.0 | Transmembrane | Helical | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000430352 | 0 | 38 | 1019_1039 | 0 | 1622.0 | Transmembrane | Helical | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000430352 | 0 | 38 | 1070_1090 | 0 | 1622.0 | Transmembrane | Helical | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000430352 | 0 | 38 | 1106_1126 | 0 | 1622.0 | Transmembrane | Helical | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000430352 | 0 | 38 | 1136_1156 | 0 | 1622.0 | Transmembrane | Helical | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000430352 | 0 | 38 | 1161_1181 | 0 | 1622.0 | Transmembrane | Helical | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000430352 | 0 | 38 | 1197_1217 | 0 | 1622.0 | Transmembrane | Helical | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000430352 | 0 | 38 | 220_240 | 0 | 1622.0 | Transmembrane | Helical | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000430352 | 0 | 38 | 268_288 | 0 | 1622.0 | Transmembrane | Helical | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000430352 | 0 | 38 | 299_319 | 0 | 1622.0 | Transmembrane | Helical | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000430352 | 0 | 38 | 30_50 | 0 | 1622.0 | Transmembrane | Helical | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000430352 | 0 | 38 | 327_347 | 0 | 1622.0 | Transmembrane | Helical | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000430352 | 0 | 38 | 359_379 | 0 | 1622.0 | Transmembrane | Helical | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000430352 | 0 | 38 | 397_417 | 0 | 1622.0 | Transmembrane | Helical | |
Tgene | ABCA8 | chr6:31934591 | chr17:66864316 | ENST00000430352 | 0 | 38 | 864_884 | 0 | 1622.0 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | SKIV2L | chr6:31934591 | chr17:66864316 | ENST00000375394 | + | 1 | 28 | 319_475 | 0 | 1247.0 | Domain | Helicase ATP-binding |
Hgene | SKIV2L | chr6:31934591 | chr17:66864316 | ENST00000375394 | + | 1 | 28 | 585_755 | 0 | 1247.0 | Domain | Helicase C-terminal |
Hgene | SKIV2L | chr6:31934591 | chr17:66864316 | ENST00000383336 | + | 1 | 28 | 319_475 | 0 | 1247.0 | Domain | Helicase ATP-binding |
Hgene | SKIV2L | chr6:31934591 | chr17:66864316 | ENST00000383336 | + | 1 | 28 | 585_755 | 0 | 1247.0 | Domain | Helicase C-terminal |
Hgene | SKIV2L | chr6:31934591 | chr17:66864316 | ENST00000412823 | + | 1 | 28 | 319_475 | 0 | 1247.0 | Domain | Helicase ATP-binding |
Hgene | SKIV2L | chr6:31934591 | chr17:66864316 | ENST00000412823 | + | 1 | 28 | 585_755 | 0 | 1247.0 | Domain | Helicase C-terminal |
Hgene | SKIV2L | chr6:31934591 | chr17:66864316 | ENST00000421789 | + | 1 | 28 | 319_475 | 0 | 1247.0 | Domain | Helicase ATP-binding |
Hgene | SKIV2L | chr6:31934591 | chr17:66864316 | ENST00000421789 | + | 1 | 28 | 585_755 | 0 | 1247.0 | Domain | Helicase C-terminal |
Hgene | SKIV2L | chr6:31934591 | chr17:66864316 | ENST00000429465 | + | 1 | 28 | 319_475 | 0 | 1247.0 | Domain | Helicase ATP-binding |
Hgene | SKIV2L | chr6:31934591 | chr17:66864316 | ENST00000429465 | + | 1 | 28 | 585_755 | 0 | 1247.0 | Domain | Helicase C-terminal |
Hgene | SKIV2L | chr6:31934591 | chr17:66864316 | ENST00000448219 | + | 1 | 28 | 319_475 | 0 | 1247.0 | Domain | Helicase ATP-binding |
Hgene | SKIV2L | chr6:31934591 | chr17:66864316 | ENST00000448219 | + | 1 | 28 | 585_755 | 0 | 1247.0 | Domain | Helicase C-terminal |
Hgene | SKIV2L | chr6:31934591 | chr17:66864316 | ENST00000375394 | + | 1 | 28 | 423_426 | 0 | 1247.0 | Motif | Note=DEVH box |
Hgene | SKIV2L | chr6:31934591 | chr17:66864316 | ENST00000383336 | + | 1 | 28 | 423_426 | 0 | 1247.0 | Motif | Note=DEVH box |
Hgene | SKIV2L | chr6:31934591 | chr17:66864316 | ENST00000412823 | + | 1 | 28 | 423_426 | 0 | 1247.0 | Motif | Note=DEVH box |
Hgene | SKIV2L | chr6:31934591 | chr17:66864316 | ENST00000421789 | + | 1 | 28 | 423_426 | 0 | 1247.0 | Motif | Note=DEVH box |
Hgene | SKIV2L | chr6:31934591 | chr17:66864316 | ENST00000429465 | + | 1 | 28 | 423_426 | 0 | 1247.0 | Motif | Note=DEVH box |
Hgene | SKIV2L | chr6:31934591 | chr17:66864316 | ENST00000448219 | + | 1 | 28 | 423_426 | 0 | 1247.0 | Motif | Note=DEVH box |
Hgene | SKIV2L | chr6:31934591 | chr17:66864316 | ENST00000375394 | + | 1 | 28 | 332_339 | 0 | 1247.0 | Nucleotide binding | ATP |
Hgene | SKIV2L | chr6:31934591 | chr17:66864316 | ENST00000383336 | + | 1 | 28 | 332_339 | 0 | 1247.0 | Nucleotide binding | ATP |
Hgene | SKIV2L | chr6:31934591 | chr17:66864316 | ENST00000412823 | + | 1 | 28 | 332_339 | 0 | 1247.0 | Nucleotide binding | ATP |
Hgene | SKIV2L | chr6:31934591 | chr17:66864316 | ENST00000421789 | + | 1 | 28 | 332_339 | 0 | 1247.0 | Nucleotide binding | ATP |
Hgene | SKIV2L | chr6:31934591 | chr17:66864316 | ENST00000429465 | + | 1 | 28 | 332_339 | 0 | 1247.0 | Nucleotide binding | ATP |
Hgene | SKIV2L | chr6:31934591 | chr17:66864316 | ENST00000448219 | + | 1 | 28 | 332_339 | 0 | 1247.0 | Nucleotide binding | ATP |
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Fusion Gene Sequence for SKIV2L-ABCA8 |
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>82142_82142_1_SKIV2L-ABCA8_SKIV2L_chr6_31934591_ENST00000375394_ABCA8_chr17_66864316_ENST00000269080_length(transcript)=3231nt_BP=2347nt GGCGGGGCTGTACCGGAAGTTGCCTCTACTTCCGCCCGTTCCGGGGCGGGGCTTACTTCGCAGCGACTACTTGCCGCACTTCCGGGCTGC CAGGCAGCTGCTGTGGCTCCAGGATGATGGAGACAGAGCGACTTGTGCTACCCCCTCCAGATCCCCTGGACCTACCCCTTCGGGCCGTGG AGCTCGGATGCACGGGGCACTGGGAGCTGCTGAACTTGCCTGGAGCTCCAGAGAGTAGCCTTCCCCATGGCCTCCCTCCTTGTGCCCCAG ATCTGCAGCAAGAAGCAGAACAGTTGTTTCTGTCATCCCCAGCCTGGCTGCCTCTGCATGGTGTGGAGCACTCAGCCCGAAAATGGCAGA GGAAGACGGATCCCTGGTCTCTTTTGGCTGTCCTGGGAGCCCCAGTCCCATCCGACCTACAGGCCCAAAGACACCCAACCACAGGCCAGA TACTGGGTTACAAAGAGGTCTTGCTGGAGAACACAAATCTCTCGGCTACAACCTCCTTGTCTCTTCGCCGGCCTCCAGGGCCAGCCTCCC AGTCCTTATGGGGAAATCCAACTCAGTATCCCTTCTGGCCAGGGGGGATGGATGAACCCACCATAACAGATCTGAACACACGGGAGGAGG CTGAGGAGGAGATAGACTTTGAGAAAGATCTTCTTACTATTCCACCTGGTTTCAAGAAAGGCATGGACTTTGCACCAAAAGATTGTCCAA CTCCAGCTCCTGGACTACTAAGCCTTAGCTGTATGTTGGAGCCTCTGGATTTGGGTGGGGGTGACGAGGATGAGAATGAGGCAGTGGGAC AGCCAGGAGGTCCCAGAGGGGACACTGTTTCAGCCTCTCCCTGCAGTGCTCCCCTGGCCCGAGCAAGCAGCTTGGAAGACCTAGTGTTGA AGGAAGCGTCCACAGCTGTATCCACCCCAGAGGCCCCAGAGCCTCCATCTCAGGAGCAGTGGGCCATCCCTGTGGACGCCACCTCCCCTG TTGGTGATTTCTATCGCCTCATTCCCCAGCCAGCCTTCCAGTGGGCATTTGAGCCAGATGTGTTTCAGAAACAGGCCATCCTGCACTTGG AACGGCATGACTCTGTCTTTGTCGCAGCTCACACATCTGCAGGAAAAACAGTTGTGGCTGAATATGCCATTGCCCTGGCCCAGAAACACA TGACACGCACCATCTACACTTCGCCCATCAAGGCCCTGAGCAACCAGAAGTTCCGGGACTTCCGAAACACATTCGGGGATGTGGGGCTGC TCACCGGGGATGTACAGCTGCATCCGGAGGCCTCCTGCCTCATCATGACCACAGAGATCCTTCGCTCCATGCTGTACAGTGGCTCAGATG TTATTCGGGACCTGGAGTGGGTCATCTTTGATGAGGTTCACTATATCAACGATGTCGAGCGTGGGGTCGTGTGGGAGGAGGTGCTTATCA TGCTACCTGACCACGTTTCTATCATCCTTCTGAGTGCCACCGTCCCCAACGCCCTTGAGTTTGCTGACTGGATTGGGCGGCTGAAGCGTC GTCAGATCTATGTGATTAGCACTGTAACCCGCCCCGTGCCCCTGGAGCACTATCTTTTCACAGGGAACAGCTCCAAGACCCAGGGGGAGC TCTTTTTGTTGCTGGACTCCCGAGGAGCCTTCCATACAAAAGGGTACTATGCAGCTGTGGAGGCCAAGAAGGAGAGAATGAGCAAACACG CCCAGACCTTTGGGGCCAAGCAGCCCACACATCAGGGGGGCCCTGCACAGGACCGCGGAGTGTACCTGTCCCTCCTGGCCTCCCTCCGCA CACGTGCCCAGTTGCCCGTGGTGGTGTTCACCTTCTCCCGGGGCCGCTGTGATGAGCAGGCCTCAGGCCTCACCTCCCTTGACCTCACCA CCAGTTCGGAGAAGAGCGAGATCCACCTCTTCCTGCAGCGCTGCCTTGCTCGCCTCCGTGGCTCTGACCGCCAGCTGCCCCAGGTCCTGC ACATGTCAGAGCTCCTGAATCGCGGCCTGGGTGTGCACCATAGCGGCATCCTGCCCATCCTCAAGGAGATCGTGGAGATGCTCTTCAGCC GTGGCCTGGTCAAGGTCTTGTTTGCCACAGAGACCTTTGCCATGGGAGTAAACATGCCTGCTCGTACAGTAGTGTTTGACTCCATGCGCA AACACGATGGCTCCACCTTCCGGGACCTGCTCCCTGGGGAGTATGTGCAGATGGCAGGCCGGGCAGGGCGGAGGGGCCTGGACCCCACAG GCACCGTTATCCTGCTCTGCAAGGGCCGAGTGCCCGAGATGGCAGACCTGCACCGCATGATGATGTCTCTGAGTTTCCCTCCCGCAAAGA CAGCAAGGGAGCTCTCCAAGGAGCAGGAGCTGGGTGATTTTGAGGAGGATTTTGATCCCTCAGTGAAGTGGAAGCTCCTCCCCCAGGAAG AGCCTTAAAACCCCAAATTCTGTGTTCCTGTTTAAACCCGTGGTTTTTTTTAAATACATTTATTTTTATAGCAGCAATGTTCTATTTTTA GAAACTATATTATAAGTACAGAAATGGTTCTCCGTGTGGTGGGAGGAGGAGGTTCGGGTGCTGGGTAAGTGCCATGTCAGTGTGGACAGA GGCATTTGACTAAGCCAACCTCCTCTCACAGCCTCTGTATCTCTGCAGGCCATACTGGTTCCATTGTTCTGTATAATACTGAATAAATAA ATTTACTTTTACATGATCGTATAAGTTTCTAGATAAGATAAACAAATTTTGTTTAAATTTTTTTAATAAAAATCTTAAAACACTTTTTTT CTAACCTAGACTGAGAAATTCATGTTTACTTTTCTAGGTGTATGATACTTTGTAAAGTTGATACTTTCCTAAGAATTTAACATGTCATAT TTTTGAAATAGATTTAAGTGTGCTTCTTATTGCTAAAAATACTAAATGTCATGGGTCATAGTATCTGATATCAATATCGTTGATAACATA TCCACAGGTAACACCATGATGTAGGCATAAATGGAAAACAAAAACCCTACTATTTCAAATATATTGTACTTTTTTATTTCTGTAAGCCAA CTGTGTGCCATTTTCACTGGACTTTTAAATCTAGACTTTAGTGATGTCTACATTGTAAATGATCTTTTGTGGATATTTGTCACTTGGTTT >82142_82142_1_SKIV2L-ABCA8_SKIV2L_chr6_31934591_ENST00000375394_ABCA8_chr17_66864316_ENST00000269080_length(amino acids)=783AA_BP=754 MPGSCCGSRMMETERLVLPPPDPLDLPLRAVELGCTGHWELLNLPGAPESSLPHGLPPCAPDLQQEAEQLFLSSPAWLPLHGVEHSARKW QRKTDPWSLLAVLGAPVPSDLQAQRHPTTGQILGYKEVLLENTNLSATTSLSLRRPPGPASQSLWGNPTQYPFWPGGMDEPTITDLNTRE EAEEEIDFEKDLLTIPPGFKKGMDFAPKDCPTPAPGLLSLSCMLEPLDLGGGDEDENEAVGQPGGPRGDTVSASPCSAPLARASSLEDLV LKEASTAVSTPEAPEPPSQEQWAIPVDATSPVGDFYRLIPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQK HMTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFDEVHYINDVERGVVWEEVL IMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSK HAQTFGAKQPTHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQV LHMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDP -------------------------------------------------------------- >82142_82142_2_SKIV2L-ABCA8_SKIV2L_chr6_31934591_ENST00000544581_ABCA8_chr17_66864316_ENST00000269080_length(transcript)=2722nt_BP=1838nt AGGCAGCTGCTGTGGCTCCAGGATGATGGAGACAGAGCGACTTGTGCTACCCCCTCCAGATCCCCTGGACCTACCCCTTCGGGCCGTGGA GCTCGGATGCACGGGGCACTGGGAGCTGCTGAACTTGCCTGGAGCTCCAGAGAGTAGCATCTTCTTACTATTCCACCTGGTTTCAAGAAA GGCATGGACTTTGCACCAAAAGATTGTCCAACTCCAGCTCCTGGACTACTAAGCCTTAGCTGTATGTTGGAGCCTCTGGATTTGGGTGGG GGTGACGAGGATGAGAATGAGGCAGTGGGACAGCCAGGAGGTCCCAGAGGGGACACTGTTTCAGCCTCTCCCTGCAGTGCTCCCCTGGCC CGAGCAAGCAGCTTGGAAGACCTAGTGTTGAAGGAAGCGTCCACAGCTGTATCCACCCCAGAGGCCCCAGAGCCTCCATCTCAGGAGCAG TGGGCCATCCCTGTGGACGCCACCTCCCCTGTTGGTGATTTCTATCGCCTCATTCCCCAGCCAGCCTTCCAGTGGGCATTTGAGCCAGAT GTGTTTCAGAAACAGGCCATCCTGCACTTGGAACGGCATGACTCTGTCTTTGTCGCAGCTCACACATCTGCAGGAAAAACAGTTGTGGCT GAATATGCCATTGCCCTGGCCCAGAAACACATGACACGCACCATCTACACTTCGCCCATCAAGGCCCTGAGCAACCAGAAGTTCCGGGAC TTCCGAAACACATTCGGGGATGTGGGGCTGCTCACCGGGGATGTACAGCTGCATCCGGAGGCCTCCTGCCTCATCATGACCACAGAGATC CTTCGCTCCATGCTGTACAGTGGCTCAGATGTTATTCGGGACCTGGAGTGGGTCATCTTTGATGAGGTTCACTATATCAACGATGTCGAG CGTGGGGTCGTGTGGGAGGAGGTGCTTATCATGCTACCTGACCACGTTTCTATCATCCTTCTGAGTGCCACCGTCCCCAACGCCCTTGAG TTTGCTGACTGGATTGGGCGGCTGAAGCGTCGTCAGATCTATGTGATTAGCACTGTAACCCGCCCCGTGCCCCTGGAGCACTATCTTTTC ACAGGGAACAGCTCCAAGACCCAGGGGGAGCTCTTTTTGTTGCTGGACTCCCGAGGAGCCTTCCATACAAAAGGGTACTATGCAGCTGTG GAGGCCAAGAAGGAGAGAATGAGCAAACACGCCCAGACCTTTGGGGCCAAGCAGCCCACACATCAGGGGGGCCCTGCACAGGACCGCGGA GTGTACCTGTCCCTCCTGGCCTCCCTCCGCACACGTGCCCAGTTGCCCGTGGTGGTGTTCACCTTCTCCCGGGGCCGCTGTGATGAGCAG GCCTCAGGCCTCACCTCCCTTGACCTCACCACCAGTTCGGAGAAGAGCGAGATCCACCTCTTCCTGCAGCGCTGCCTTGCTCGCCTCCGT GGCTCTGACCGCCAGCTGCCCCAGGTCCTGCACATGTCAGAGCTCCTGAATCGCGGCCTGGGTGTGCACCATAGCGGCATCCTGCCCATC CTCAAGGAGATCGTGGAGATGCTCTTCAGCCGTGGCCTGGTCAAGGTCTTGTTTGCCACAGAGACCTTTGCCATGGGAGTAAACATGCCT GCTCGTACAGTAGTGTTTGACTCCATGCGCAAACACGATGGCTCCACCTTCCGGGACCTGCTCCCTGGGGAGTATGTGCAGATGGCAGGC CGGGCAGGGCGGAGGGGCCTGGACCCCACAGGCACCGTTATCCTGCTCTGCAAGGGCCGAGTGCCCGAGATGGCAGACCTGCACCGCATG ATGATGTCTCTGAGTTTCCCTCCCGCAAAGACAGCAAGGGAGCTCTCCAAGGAGCAGGAGCTGGGTGATTTTGAGGAGGATTTTGATCCC TCAGTGAAGTGGAAGCTCCTCCCCCAGGAAGAGCCTTAAAACCCCAAATTCTGTGTTCCTGTTTAAACCCGTGGTTTTTTTTAAATACAT TTATTTTTATAGCAGCAATGTTCTATTTTTAGAAACTATATTATAAGTACAGAAATGGTTCTCCGTGTGGTGGGAGGAGGAGGTTCGGGT GCTGGGTAAGTGCCATGTCAGTGTGGACAGAGGCATTTGACTAAGCCAACCTCCTCTCACAGCCTCTGTATCTCTGCAGGCCATACTGGT TCCATTGTTCTGTATAATACTGAATAAATAAATTTACTTTTACATGATCGTATAAGTTTCTAGATAAGATAAACAAATTTTGTTTAAATT TTTTTAATAAAAATCTTAAAACACTTTTTTTCTAACCTAGACTGAGAAATTCATGTTTACTTTTCTAGGTGTATGATACTTTGTAAAGTT GATACTTTCCTAAGAATTTAACATGTCATATTTTTGAAATAGATTTAAGTGTGCTTCTTATTGCTAAAAATACTAAATGTCATGGGTCAT AGTATCTGATATCAATATCGTTGATAACATATCCACAGGTAACACCATGATGTAGGCATAAATGGAAAACAAAAACCCTACTATTTCAAA TATATTGTACTTTTTTATTTCTGTAAGCCAACTGTGTGCCATTTTCACTGGACTTTTAAATCTAGACTTTAGTGATGTCTACATTGTAAA TGATCTTTTGTGGATATTTGTCACTTGGTTTCAGAAAGTTCACAAATGTAGCAACAGCTCACATGACTGAGTAGGTAGAAAATGTGAAAT >82142_82142_2_SKIV2L-ABCA8_SKIV2L_chr6_31934591_ENST00000544581_ABCA8_chr17_66864316_ENST00000269080_length(amino acids)=581AA_BP=552 MDFAPKDCPTPAPGLLSLSCMLEPLDLGGGDEDENEAVGQPGGPRGDTVSASPCSAPLARASSLEDLVLKEASTAVSTPEAPEPPSQEQW AIPVDATSPVGDFYRLIPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDF RNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEF ADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQPTHQGGPAQDRGV YLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPIL KEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMM -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for SKIV2L-ABCA8 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for SKIV2L-ABCA8 |
![]() (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for SKIV2L-ABCA8 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | SKIV2L | C1857276 | Trichohepatoenteric Syndrome | 3 | CTD_human;GENOMICS_ENGLAND;ORPHANET |
Hgene | SKIV2L | C3281289 | TRICHOHEPATOENTERIC SYNDROME 2 | 3 | GENOMICS_ENGLAND;UNIPROT |
Hgene | SKIV2L | C0021053 | Immune System Diseases | 1 | GENOMICS_ENGLAND |
Tgene | C0009402 | Colorectal Carcinoma | 1 | CTD_human | |
Tgene | C0009404 | Colorectal Neoplasms | 1 | CTD_human |