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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:TMEM242-PREP (FusionGDB2 ID:HG729515TG5550)

Fusion Gene Summary for TMEM242-PREP

check button Fusion gene summary
Fusion gene informationFusion gene name: TMEM242-PREP
Fusion gene ID: hg729515tg5550
HgeneTgene
Gene symbol

TMEM242

PREP

Gene ID

729515

5550

Gene nametransmembrane protein 242prolyl endopeptidase
SynonymsBM033|C6orf35PE|PEP
Cytomap('C6orf35','TMEM242')('PREP','PREP')

6q25.3

6q21

Type of geneprotein-codingprotein-coding
Descriptiontransmembrane protein 242UPF0463 transmembrane protein C6orf35prolyl endopeptidasedJ355L5.1 (prolyl endopeptidase)post-proline cleaving enzymeprolyl oligopeptidase
Modification date2020031320200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000400788, ENST00000367144, 
Fusion gene scores* DoF score6 X 2 X 5=608 X 4 X 8=256
# samples 89
** MAII scorelog2(8/60*10)=0.415037499278844
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
log2(9/256*10)=-1.50814690367033
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: TMEM242 [Title/Abstract] AND PREP [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointC6orf35(157739814)-PREP(105845802), # samples:1
TMEM242(157739814)-PREP(105845802), # samples:2
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check buttonFusion gene breakpoints across TMEM242 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure
check buttonFusion gene breakpoints across PREP (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4THCATCGA-CE-A13K-01AC6orf35chr6

157739814

-PREPchr6

105845802

-
ChimerDB4THCATCGA-CE-A13K-01ATMEM242chr6

157739814

-PREPchr6

105845802

-
ChimerDB4THCATCGA-CE-A13KTMEM242chr6

157739813

-PREPchr6

105845802

-


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Fusion Gene ORF analysis for TMEM242-PREP

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000400788ENST00000369110TMEM242chr6

157739814

-PREPchr6

105845802

-
In-frameENST00000400788ENST00000369110TMEM242chr6

157739813

-PREPchr6

105845802

-
intron-3CDSENST00000367144ENST00000369110TMEM242chr6

157739814

-PREPchr6

105845802

-
intron-3CDSENST00000367144ENST00000369110TMEM242chr6

157739813

-PREPchr6

105845802

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000400788TMEM242chr6157739814-ENST00000369110PREPchr6105845802-30964291022516804
ENST00000400788TMEM242chr6157739813-ENST00000369110PREPchr6105845802-30964291022516804

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000400788ENST00000369110TMEM242chr6157739814-PREPchr6105845802-0.0003708270.99962914
ENST00000400788ENST00000369110TMEM242chr6157739813-PREPchr6105845802-0.0003708270.99962914

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Fusion Genomic Features for TMEM242-PREP


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

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Fusion Protein Features for TMEM242-PREP


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr6:157739814/chr6:105845802)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneTMEM242chr6:157739813chr6:105845802ENST00000400788-3430_50109142.0TransmembraneHelical
HgeneTMEM242chr6:157739813chr6:105845802ENST00000400788-3482_102109142.0TransmembraneHelical
HgeneTMEM242chr6:157739814chr6:105845802ENST00000400788-3430_50109142.0TransmembraneHelical
HgeneTMEM242chr6:157739814chr6:105845802ENST00000400788-3482_102109142.0TransmembraneHelical

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for TMEM242-PREP


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>91973_91973_1_TMEM242-PREP_TMEM242_chr6_157739813_ENST00000400788_PREP_chr6_105845802_ENST00000369110_length(transcript)=3096nt_BP=429nt
AGATTGCACAGGAGGAGGCGGTAGCGGAACCTTTCTCCTCCGCCTGGTTCTCGCTTCCACCCGGGCCCAGTTGGGGACGGACGCACTAGA
GGCGACCTAAACATGGAGACAGCGGGCGCTGCAACTGGGCAGCCGGCCTCTGGGCTGGAGGCTCCGGGGTCCACGAATGACCGGCTTTTC
CTGGTTAAAGGTGGAATTTTCCTTGGTACCGTTGCTGCAGCGGGAATGCTAGCTGGATTTATTACAACATTATCATTGGCTAAAAAGAAA
AGCCCTGAATGGTTCAATAAGGGAAGTATGGCCACGGCTGCATTACCGGAAAGCGGGTCTTCCCTTGCCTTGCGAGCTCTGGGCTGGGGC
TCCCTGTATGCATGGTGTGGGGTTGGTGTGATTAGCTTCGCAGTCTGGAAAGCTTTAGGAGTTCACAGTGTACAGGATTATCATGGTCAT
AAAATTTGTGACCCTTACGCCTGGCTTGAAGACCCCGACAGTGAACAGACTAAGGCCTTTGTGGAGGCCCAGAATAAGATTACTGTGCCA
TTTCTTGAGCAGTGTCCCATCAGAGGTTTATACAAAGAGAGAATGACTGAACTATATGATTATCCCAAGTATAGTTGCCACTTCAAGAAA
GGAAAACGGTATTTTTATTTTTACAATACAGGTTTGCAGAACCAGCGAGTATTATATGTACAGGATTCCTTAGAGGGTGAGGCCAGAGTG
TTCCTGGACCCCAACATACTGTCTGACGATGGCACAGTGGCACTCCGAGGTTATGCGTTCAGCGAAGATGGTGAATATTTTGCCTATGGT
CTGAGTGCCAGTGGCTCAGACTGGGTGACAATCAAGTTCATGAAAGTTGATGGTGCCAAAGAGCTTCCAGATGTGCTTGAAAGAGTCAAG
TTCAGCTGTATGGCCTGGACCCATGATGGGAAGGGAATGTTCTACAACTCATACCCTCAACAGGATGGAAAAAGTGATGGCACAGAGACA
TCTACCAATCTCCACCAAAAGCTCTACTACCATGTCTTGGGAACCGATCAGTCAGAAGATATTTTGTGTGCTGAGTTTCCTGATGAACCT
AAATGGATGGGTGGAGCTGAGTTATCTGATGATGGCCGCTATGTCTTGTTATCAATAAGGGAAGGATGTGATCCAGTAAACCGACTCTGG
TACTGTGACCTACAGCAGGAATCCAGTGGCATCGCGGGAATCCTGAAGTGGGTAAAACTGATTGACAACTTTGAAGGGGAATATGACTAC
GTGACCAATGAGGGGACGGTGTTCACATTCAAGACGAATCGCCAGTCTCCCAACTATCGCGTGATCAACATTGACTTCAGGGATCCTGAA
GAGTCTAAGTGGAAAGTACTTGTTCCTGAGCATGAGAAAGATGTCTTAGAATGGATAGCTTGTGTCAGGTCCAACTTCTTGGTCTTATGC
TACCTCCATGACGTCAAGAACATTCTGCAGCTCCATGACCTGACTACTGGTGCTCTCCTTAAGACCTTCCCGCTCGATGTCGGCAGCATT
GTAGGGTACAGCGGTCAGAAGAAGGACACTGAAATCTTCTATCAGTTTACTTCCTTTTTATCTCCAGGTATCATTTATCACTGTGATCTT
ACCAAAGAGGAGCTGGAGCCAAGAGTTTTCCGAGAGGTGACCGTAAAAGGAATTGATGCTTCTGATTACCAGACAGTCCAGATTTTCTAC
CCTAGCAAGGATGGTACGAAGATTCCAATGTTCATTGTGCATAAAAAAGGCATAAAATTGGATGGCTCTCATCCAGCTTTCTTATATGGC
TATGGCGGCTTCAACATATCCATCACACCCAACTACAGTGTTTCCAGGCTTATTTTTGTGAGACACATGGGTGGTATCCTGGCAGTGGCC
AACATCAGAGGAGGTGGCGAATATGGAGAGACGTGGCATAAAGGTGGTATCTTGGCCAACAAACAAAACTGCTTTGATGACTTTCAGTGT
GCTGCTGAGTATCTGATCAAGGAAGGTTACACATCTCCCAAGAGGCTGACTATTAATGGAGGTTCAAATGGAGGCCTCTTAGTGGCTGCT
TGTGCAAATCAGAGACCTGACCTCTTTGGTTGTGTTATTGCCCAAGTTGGAGTAATGGACATGCTGAAGTTTCATAAATATACCATCGGC
CATGCTTGGACCACTGATTATGGGTGCTCGGACAGCAAACAACACTTTGAATGGCTTGTCAAATACTCTCCATTGCATAATGTGAAGTTA
CCAGAAGCAGATGACATCCAGTACCCGTCCATGCTGCTCCTCACTGCTGACCATGATGACCGCGTGGTCCCGCTTCACTCCCTGAAGTTC
ATTGCCACCCTTCAGTACATCGTGGGCCGCAGCAGGAAGCAAAGCAACCCCCTGCTTATCCACGTGGACACCAAGGCGGGCCACGGGGCG
GGGAAGCCCACAGCCAAAGTGATAGAGGAAGTCTCAGACATGTTTGCGTTCATCGCGCGGTGCCTGAACGTCGACTGGATTCCATAAACA
GTTTTCGTGCTTCCTCCTGACAGCGACAGAAAACCTCAAGGGCTTTCCCACGTTGACACCAAGAAACCACTGGGCATAATGCTTCCCCAC
GGGAACATTATTCCTGCACTCACAGGCTACAGTTGAACAGAACTGCCGTGGGAATTTTATCTTTTTTAGGCTTCTCCTTTTTAGCAAGGC
CTTGGTGTTTCTTTTTCCACCCTGTCTAGGCACATGTGGTTTTTTGGTGTTTTTTTTAAGGGCATGTTGGGATAAATAGCTAAATGGCAA
CAAACACATTGTGAATATTAGATTGCTGAATTAAGGATCATAGTCGGGCATACTTATCTATATCCATAACCTCTATATCTTTAAATAAAT
GTGAGAACTGTTCTCATGGAGAAGACTTCTTTGCAACAATAATAAATGTTATTTAAGAATGACAGGCTTTTACTTCCGGTTTCTTCATAT
TGAGGGGCAACTCCAGAAGTGGAGTTTTCTGTGAGAATAAAGCATTTCACCTTTCTGCAACAAGTTAGTTTTCAAGCAGTTAAGTCATAG

>91973_91973_1_TMEM242-PREP_TMEM242_chr6_157739813_ENST00000400788_PREP_chr6_105845802_ENST00000369110_length(amino acids)=804AA_BP=109
METAGAATGQPASGLEAPGSTNDRLFLVKGGIFLGTVAAAGMLAGFITTLSLAKKKSPEWFNKGSMATAALPESGSSLALRALGWGSLYA
WCGVGVISFAVWKALGVHSVQDYHGHKICDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKERMTELYDYPKYSCHFKKGKRY
FYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCM
AWTHDGKGMFYNSYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDL
QQESSGIAGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRQSPNYRVINIDFRDPEESKWKVLVPEHEKDVLEWIACVRSNFLVLCYLHD
VKNILQLHDLTTGALLKTFPLDVGSIVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFREVTVKGIDASDYQTVQIFYPSKD
GTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGILAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEY
LIKEGYTSPKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLVKYSPLHNVKLPEAD

--------------------------------------------------------------
>91973_91973_2_TMEM242-PREP_TMEM242_chr6_157739814_ENST00000400788_PREP_chr6_105845802_ENST00000369110_length(transcript)=3096nt_BP=429nt
AGATTGCACAGGAGGAGGCGGTAGCGGAACCTTTCTCCTCCGCCTGGTTCTCGCTTCCACCCGGGCCCAGTTGGGGACGGACGCACTAGA
GGCGACCTAAACATGGAGACAGCGGGCGCTGCAACTGGGCAGCCGGCCTCTGGGCTGGAGGCTCCGGGGTCCACGAATGACCGGCTTTTC
CTGGTTAAAGGTGGAATTTTCCTTGGTACCGTTGCTGCAGCGGGAATGCTAGCTGGATTTATTACAACATTATCATTGGCTAAAAAGAAA
AGCCCTGAATGGTTCAATAAGGGAAGTATGGCCACGGCTGCATTACCGGAAAGCGGGTCTTCCCTTGCCTTGCGAGCTCTGGGCTGGGGC
TCCCTGTATGCATGGTGTGGGGTTGGTGTGATTAGCTTCGCAGTCTGGAAAGCTTTAGGAGTTCACAGTGTACAGGATTATCATGGTCAT
AAAATTTGTGACCCTTACGCCTGGCTTGAAGACCCCGACAGTGAACAGACTAAGGCCTTTGTGGAGGCCCAGAATAAGATTACTGTGCCA
TTTCTTGAGCAGTGTCCCATCAGAGGTTTATACAAAGAGAGAATGACTGAACTATATGATTATCCCAAGTATAGTTGCCACTTCAAGAAA
GGAAAACGGTATTTTTATTTTTACAATACAGGTTTGCAGAACCAGCGAGTATTATATGTACAGGATTCCTTAGAGGGTGAGGCCAGAGTG
TTCCTGGACCCCAACATACTGTCTGACGATGGCACAGTGGCACTCCGAGGTTATGCGTTCAGCGAAGATGGTGAATATTTTGCCTATGGT
CTGAGTGCCAGTGGCTCAGACTGGGTGACAATCAAGTTCATGAAAGTTGATGGTGCCAAAGAGCTTCCAGATGTGCTTGAAAGAGTCAAG
TTCAGCTGTATGGCCTGGACCCATGATGGGAAGGGAATGTTCTACAACTCATACCCTCAACAGGATGGAAAAAGTGATGGCACAGAGACA
TCTACCAATCTCCACCAAAAGCTCTACTACCATGTCTTGGGAACCGATCAGTCAGAAGATATTTTGTGTGCTGAGTTTCCTGATGAACCT
AAATGGATGGGTGGAGCTGAGTTATCTGATGATGGCCGCTATGTCTTGTTATCAATAAGGGAAGGATGTGATCCAGTAAACCGACTCTGG
TACTGTGACCTACAGCAGGAATCCAGTGGCATCGCGGGAATCCTGAAGTGGGTAAAACTGATTGACAACTTTGAAGGGGAATATGACTAC
GTGACCAATGAGGGGACGGTGTTCACATTCAAGACGAATCGCCAGTCTCCCAACTATCGCGTGATCAACATTGACTTCAGGGATCCTGAA
GAGTCTAAGTGGAAAGTACTTGTTCCTGAGCATGAGAAAGATGTCTTAGAATGGATAGCTTGTGTCAGGTCCAACTTCTTGGTCTTATGC
TACCTCCATGACGTCAAGAACATTCTGCAGCTCCATGACCTGACTACTGGTGCTCTCCTTAAGACCTTCCCGCTCGATGTCGGCAGCATT
GTAGGGTACAGCGGTCAGAAGAAGGACACTGAAATCTTCTATCAGTTTACTTCCTTTTTATCTCCAGGTATCATTTATCACTGTGATCTT
ACCAAAGAGGAGCTGGAGCCAAGAGTTTTCCGAGAGGTGACCGTAAAAGGAATTGATGCTTCTGATTACCAGACAGTCCAGATTTTCTAC
CCTAGCAAGGATGGTACGAAGATTCCAATGTTCATTGTGCATAAAAAAGGCATAAAATTGGATGGCTCTCATCCAGCTTTCTTATATGGC
TATGGCGGCTTCAACATATCCATCACACCCAACTACAGTGTTTCCAGGCTTATTTTTGTGAGACACATGGGTGGTATCCTGGCAGTGGCC
AACATCAGAGGAGGTGGCGAATATGGAGAGACGTGGCATAAAGGTGGTATCTTGGCCAACAAACAAAACTGCTTTGATGACTTTCAGTGT
GCTGCTGAGTATCTGATCAAGGAAGGTTACACATCTCCCAAGAGGCTGACTATTAATGGAGGTTCAAATGGAGGCCTCTTAGTGGCTGCT
TGTGCAAATCAGAGACCTGACCTCTTTGGTTGTGTTATTGCCCAAGTTGGAGTAATGGACATGCTGAAGTTTCATAAATATACCATCGGC
CATGCTTGGACCACTGATTATGGGTGCTCGGACAGCAAACAACACTTTGAATGGCTTGTCAAATACTCTCCATTGCATAATGTGAAGTTA
CCAGAAGCAGATGACATCCAGTACCCGTCCATGCTGCTCCTCACTGCTGACCATGATGACCGCGTGGTCCCGCTTCACTCCCTGAAGTTC
ATTGCCACCCTTCAGTACATCGTGGGCCGCAGCAGGAAGCAAAGCAACCCCCTGCTTATCCACGTGGACACCAAGGCGGGCCACGGGGCG
GGGAAGCCCACAGCCAAAGTGATAGAGGAAGTCTCAGACATGTTTGCGTTCATCGCGCGGTGCCTGAACGTCGACTGGATTCCATAAACA
GTTTTCGTGCTTCCTCCTGACAGCGACAGAAAACCTCAAGGGCTTTCCCACGTTGACACCAAGAAACCACTGGGCATAATGCTTCCCCAC
GGGAACATTATTCCTGCACTCACAGGCTACAGTTGAACAGAACTGCCGTGGGAATTTTATCTTTTTTAGGCTTCTCCTTTTTAGCAAGGC
CTTGGTGTTTCTTTTTCCACCCTGTCTAGGCACATGTGGTTTTTTGGTGTTTTTTTTAAGGGCATGTTGGGATAAATAGCTAAATGGCAA
CAAACACATTGTGAATATTAGATTGCTGAATTAAGGATCATAGTCGGGCATACTTATCTATATCCATAACCTCTATATCTTTAAATAAAT
GTGAGAACTGTTCTCATGGAGAAGACTTCTTTGCAACAATAATAAATGTTATTTAAGAATGACAGGCTTTTACTTCCGGTTTCTTCATAT
TGAGGGGCAACTCCAGAAGTGGAGTTTTCTGTGAGAATAAAGCATTTCACCTTTCTGCAACAAGTTAGTTTTCAAGCAGTTAAGTCATAG

>91973_91973_2_TMEM242-PREP_TMEM242_chr6_157739814_ENST00000400788_PREP_chr6_105845802_ENST00000369110_length(amino acids)=804AA_BP=109
METAGAATGQPASGLEAPGSTNDRLFLVKGGIFLGTVAAAGMLAGFITTLSLAKKKSPEWFNKGSMATAALPESGSSLALRALGWGSLYA
WCGVGVISFAVWKALGVHSVQDYHGHKICDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKERMTELYDYPKYSCHFKKGKRY
FYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCM
AWTHDGKGMFYNSYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDL
QQESSGIAGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRQSPNYRVINIDFRDPEESKWKVLVPEHEKDVLEWIACVRSNFLVLCYLHD
VKNILQLHDLTTGALLKTFPLDVGSIVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFREVTVKGIDASDYQTVQIFYPSKD
GTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGILAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEY
LIKEGYTSPKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLVKYSPLHNVKLPEAD

--------------------------------------------------------------

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Fusion Gene PPI Analysis for TMEM242-PREP


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for TMEM242-PREP


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for TMEM242-PREP


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneC0002622Amnesia1CTD_human
TgeneC0002624Retrograde amnesia1CTD_human
TgeneC0024623Malignant neoplasm of stomach1CTD_human
TgeneC0038356Stomach Neoplasms1CTD_human
TgeneC0233750Hysterical amnesia1CTD_human
TgeneC0233796Temporary Amnesia1CTD_human
TgeneC0235874Disease Exacerbation1CTD_human
TgeneC0236795Dissociative Amnesia1CTD_human
TgeneC0262497Global Amnesia1CTD_human
TgeneC0338831Manic1PSYGENET
TgeneC0750906Tactile Amnesia1CTD_human
TgeneC0750907Amnestic State1CTD_human
TgeneC0750908Pre-Ictal Amnesia1CTD_human
TgeneC0750909Retrograde Memory Loss1CTD_human
TgeneC0750910Pre-Ictal Memory Loss1CTD_human
TgeneC1708349Hereditary Diffuse Gastric Cancer1CTD_human