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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:CCDC92-FAM101A (FusionGDB2 ID:HG80212TG144347)

Fusion Gene Summary for CCDC92-FAM101A

check button Fusion gene summary
Fusion gene informationFusion gene name: CCDC92-FAM101A
Fusion gene ID: hg80212tg144347
HgeneTgene
Gene symbol

CCDC92

FAM101A

Gene ID

80212

144347

Gene namecoiled-coil domain containing 92refilin A
Synonyms-CFM2|FAM101A
Cytomap('CCDC92')('FAM101A')

12q24.31

12q24.31

Type of geneprotein-codingprotein-coding
Descriptioncoiled-coil domain-containing protein 92limkain beta 2refilin-Afamily with sequence similarity 101, member Afilamin-interacting protein FAM101Aprotein FAM101ArefilinAregulator of filamin protein A
Modification date2020031320200313
UniProtAcc

Q53HC0

.
Ensembl transtripts involved in fusion geneENST00000238156, ENST00000545891, 
ENST00000544798, ENST00000545135, 
Fusion gene scores* DoF score7 X 5 X 4=1405 X 3 X 4=60
# samples 65
** MAII scorelog2(6/140*10)=-1.22239242133645
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(5/60*10)=-0.263034405833794
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: CCDC92 [Title/Abstract] AND FAM101A [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointCCDC92(124457076)-FAM101A(124458433), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID


check button Fusion gene information
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4STADTCGA-BR-A4PE-01ACCDC92chr12

124457076

-FAM101Achr12

124458433

+


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Fusion Gene ORF analysis for CCDC92-FAM101A

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5UTR-3UTRENST00000238156ENST00000545615CCDC92chr12

124457076

-FAM101Achr12

124458433

+
5UTR-3UTRENST00000545891ENST00000545615CCDC92chr12

124457076

-FAM101Achr12

124458433

+
5UTR-intronENST00000238156ENST00000324038CCDC92chr12

124457076

-FAM101Achr12

124458433

+
5UTR-intronENST00000238156ENST00000338359CCDC92chr12

124457076

-FAM101Achr12

124458433

+
5UTR-intronENST00000238156ENST00000389727CCDC92chr12

124457076

-FAM101Achr12

124458433

+
5UTR-intronENST00000238156ENST00000546355CCDC92chr12

124457076

-FAM101Achr12

124458433

+
5UTR-intronENST00000545891ENST00000324038CCDC92chr12

124457076

-FAM101Achr12

124458433

+
5UTR-intronENST00000545891ENST00000338359CCDC92chr12

124457076

-FAM101Achr12

124458433

+
5UTR-intronENST00000545891ENST00000389727CCDC92chr12

124457076

-FAM101Achr12

124458433

+
5UTR-intronENST00000545891ENST00000546355CCDC92chr12

124457076

-FAM101Achr12

124458433

+
intron-3UTRENST00000544798ENST00000545615CCDC92chr12

124457076

-FAM101Achr12

124458433

+
intron-3UTRENST00000545135ENST00000545615CCDC92chr12

124457076

-FAM101Achr12

124458433

+
intron-intronENST00000544798ENST00000324038CCDC92chr12

124457076

-FAM101Achr12

124458433

+
intron-intronENST00000544798ENST00000338359CCDC92chr12

124457076

-FAM101Achr12

124458433

+
intron-intronENST00000544798ENST00000389727CCDC92chr12

124457076

-FAM101Achr12

124458433

+
intron-intronENST00000544798ENST00000546355CCDC92chr12

124457076

-FAM101Achr12

124458433

+
intron-intronENST00000545135ENST00000324038CCDC92chr12

124457076

-FAM101Achr12

124458433

+
intron-intronENST00000545135ENST00000338359CCDC92chr12

124457076

-FAM101Achr12

124458433

+
intron-intronENST00000545135ENST00000389727CCDC92chr12

124457076

-FAM101Achr12

124458433

+
intron-intronENST00000545135ENST00000546355CCDC92chr12

124457076

-FAM101Achr12

124458433

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for CCDC92-FAM101A


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
CCDC92chr12124457075-FAM101Achr12124458432+0.177143010.82285696
CCDC92chr12124457075-FAM101Achr12124458432+0.177143010.82285696


check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

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Fusion Protein Features for CCDC92-FAM101A


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:124457076/:124458433)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
CCDC92

Q53HC0

.
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for CCDC92-FAM101A


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for CCDC92-FAM101A


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for CCDC92-FAM101A


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for CCDC92-FAM101A


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneCCDC92C0010068Coronary heart disease1CTD_human
HgeneCCDC92C0011860Diabetes Mellitus, Non-Insulin-Dependent1CTD_human