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![]() | Fusion Gene Summary |
![]() | Fusion Gene ORF analysis |
![]() | Fusion Genomic Features |
![]() | Fusion Protein Features |
![]() | Fusion Gene Sequence |
![]() | Fusion Gene PPI analysis |
![]() | Related Drugs |
![]() | Related Diseases |
Fusion gene:CALM2-PSPC1 (FusionGDB2 ID:HG805TG55269) |
Fusion Gene Summary for CALM2-PSPC1 |
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Fusion gene information | Fusion gene name: CALM2-PSPC1 | Fusion gene ID: hg805tg55269 | Hgene | Tgene | Gene symbol | CALM2 | PSPC1 | Gene ID | 805 | 55269 |
Gene name | calmodulin 2 | paraspeckle component 1 | |
Synonyms | CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM | PSP1 | |
Cytomap | ('CALM2')('PSPC1') 2p21 | 13q12.11 | |
Type of gene | protein-coding | protein-coding | |
Description | calmodulin-2Calmodulin-1Calmodulin-3LP7057 proteincalmodulin 2 (phosphorylase kinase, delta)phosphorylase kinase deltaphosphorylase kinase subunit deltaprepro-calmodulin 2 | paraspeckle component 1paraspeckle protein 1 | |
Modification date | 20200320 | 20200313 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000272298, ENST00000409563, ENST00000484408, | ||
Fusion gene scores | * DoF score | 17 X 13 X 4=884 | 24 X 15 X 13=4680 |
# samples | 17 | 26 | |
** MAII score | log2(17/884*10)=-2.37851162325373 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(26/4680*10)=-4.16992500144231 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: CALM2 [Title/Abstract] AND PSPC1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | CALM2(47403580)-PSPC1(20283739), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | CALM2-PSPC1 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. CALM2-PSPC1 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. CALM2-PSPC1 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. CALM2-PSPC1 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | CALM2 | GO:0010880 | regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum | 20226167 |
Hgene | CALM2 | GO:0032516 | positive regulation of phosphoprotein phosphatase activity | 8631777 |
Hgene | CALM2 | GO:0035307 | positive regulation of protein dephosphorylation | 8631777 |
Hgene | CALM2 | GO:0051343 | positive regulation of cyclic-nucleotide phosphodiesterase activity | 8631777 |
Hgene | CALM2 | GO:0051592 | response to calcium ion | 7607248 |
Hgene | CALM2 | GO:0060315 | negative regulation of ryanodine-sensitive calcium-release channel activity | 26164367 |
Hgene | CALM2 | GO:0060316 | positive regulation of ryanodine-sensitive calcium-release channel activity | 20226167 |
Tgene | PSPC1 | GO:0002218 | activation of innate immune response | 28712728 |
![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | Non-Cancer | TCGA-IP-7968-11A | CALM2 | chr2 | 47403580 | - | PSPC1 | chr13 | 20283739 | - |
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Fusion Gene ORF analysis for CALM2-PSPC1 |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-intron | ENST00000272298 | ENST00000497722 | CALM2 | chr2 | 47403580 | - | PSPC1 | chr13 | 20283739 | - |
5UTR-3CDS | ENST00000409563 | ENST00000338910 | CALM2 | chr2 | 47403580 | - | PSPC1 | chr13 | 20283739 | - |
5UTR-intron | ENST00000409563 | ENST00000497722 | CALM2 | chr2 | 47403580 | - | PSPC1 | chr13 | 20283739 | - |
In-frame | ENST00000272298 | ENST00000338910 | CALM2 | chr2 | 47403580 | - | PSPC1 | chr13 | 20283739 | - |
intron-3CDS | ENST00000484408 | ENST00000338910 | CALM2 | chr2 | 47403580 | - | PSPC1 | chr13 | 20283739 | - |
intron-intron | ENST00000484408 | ENST00000497722 | CALM2 | chr2 | 47403580 | - | PSPC1 | chr13 | 20283739 | - |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000272298 | CALM2 | chr2 | 47403580 | - | ENST00000338910 | PSPC1 | chr13 | 20283739 | - | 1250 | 161 | 119 | 574 | 151 |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000272298 | ENST00000338910 | CALM2 | chr2 | 47403580 | - | PSPC1 | chr13 | 20283739 | - | 0.015560197 | 0.98443973 |
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Fusion Genomic Features for CALM2-PSPC1 |
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Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
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Fusion Protein Features for CALM2-PSPC1 |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr2:47403580/chr13:20283739) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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Hgene | Tgene |
. | . |
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | PSPC1 | chr2:47403580 | chr13:20283739 | ENST00000338910 | 5 | 9 | 394_516 | 386 | 524.0 | Compositional bias | Note=Gly-rich |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | PSPC1 | chr2:47403580 | chr13:20283739 | ENST00000338910 | 5 | 9 | 283_377 | 386 | 524.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | PSPC1 | chr2:47403580 | chr13:20283739 | ENST00000338910 | 5 | 9 | 156_237 | 386 | 524.0 | Domain | RRM 2 | |
Tgene | PSPC1 | chr2:47403580 | chr13:20283739 | ENST00000338910 | 5 | 9 | 82_154 | 386 | 524.0 | Domain | RRM 1 | |
Tgene | PSPC1 | chr2:47403580 | chr13:20283739 | ENST00000338910 | 5 | 9 | 125_358 | 386 | 524.0 | Region | Note=Sufficient for paraspeckles localization |
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Fusion Gene Sequence for CALM2-PSPC1 |
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>12555_12555_1_CALM2-PSPC1_CALM2_chr2_47403580_ENST00000272298_PSPC1_chr13_20283739_ENST00000338910_length(transcript)=1250nt_BP=161nt CTCGTTTGCGATGTTCCGTTATCTGGATGCGGCGGAGGGATCTGGCGGAGGGAGGTGTTTATGAGGCGCTGGGGGCGGAGGAGGCGAATT AGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCGTCTCGGAAACCGGTAGCGCTTGCAGCATGAGAGAACAGGAAATGAGAA TGGGTGATATGGGTCCCCGTGGAGCAATAAACATGGGAGATGCGTTTAGCCCAGCCCCTGCTGGTAACCAAGGTCCTCCTCCAATGATGG GTATGAATATGAACAACAGAGCAACTATACCTGGCCCACCAATGGGTCCTGGTCCTGCCATGGGACCAGAAGGAGCCGCAAATATGGGAA CTCCAATGATGCCAGATAATGGAGCAGTGCACAATGACAGATTTCCTCAAGGACCACCATCTCAGATGGGTTCACCTATGGGGAGTAGAA CAGGTTCTGAAACCCCTCAAGCACCAATGAGTGGTGTAGGTCCTGTGAGTGGTGGTCCTGGTGGCTTTGGTAGAGGAAGTCAAGGGGGCA ACTTTGAAGGCCCTAATAAGCGTCGTAGATATTAAACATTCGTTCATTCCTGGCTATCTAGAAAAAAAAAAGTCAGTGGTATGCCTTTAT ACTTTTACCTGTTATCTGGAAGAAATGGTTTTATTGTTAATGTATGTAGACTTAAAAGTTTTTTTTTTTTTGTAAAACTTGAGGTTTTTG TATTTTTCTTTATTCATGAGCTTTGTAGATTAGAATGGTAATGATGCTCATCATTTTGAATGTTGAAATGTGTTTGTGACTTTAGCTAAA TATAAGTATTCCATAGTACTGTGAAATCTATGTAGTTAATCTCAATAAAGAAATCATTTTGGATAATTTAAAACTGTTATTAGTGGTATT CTCTTACGGTCTTACTAAACTTTGCTGTAACAGTAATGCTTTGGTTGCTTTAACTAATCCTATCATTAAAAATGAAAATGATTTTGCTTT TTAATTTGCGCAAGTAGCACTAAAGATAGAAGCTTAATTAATGAAAGCTAATGTCAATAAGGGGTAGATAGAGTAGTATATGTGGGGGTG GGAGGGTATGGGAGTTTAATTTGTATAAACCACTGATGTTCTGTGAAATCGGAATTTCCAGCTACATTTCATATAGCTTCTGAATATTCA >12555_12555_1_CALM2-PSPC1_CALM2_chr2_47403580_ENST00000272298_PSPC1_chr13_20283739_ENST00000338910_length(amino acids)=151AA_BP=14 MCGRVSETGSACSMREQEMRMGDMGPRGAINMGDAFSPAPAGNQGPPPMMGMNMNNRATIPGPPMGPGPAMGPEGAANMGTPMMPDNGAV -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for CALM2-PSPC1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for CALM2-PSPC1 |
![]() (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for CALM2-PSPC1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | CALM2 | C4015695 | LONG QT SYNDROME 15 | 6 | CTD_human;GENOMICS_ENGLAND;UNIPROT |
Hgene | CALM2 | C0011570 | Mental Depression | 5 | PSYGENET |
Hgene | CALM2 | C0011581 | Depressive disorder | 5 | PSYGENET |
Hgene | CALM2 | C0005586 | Bipolar Disorder | 2 | PSYGENET |
Hgene | CALM2 | C0035828 | Romano-Ward Syndrome | 2 | ORPHANET |
Hgene | CALM2 | C0006868 | Cannabis Abuse | 1 | CTD_human |
Hgene | CALM2 | C0006870 | Cannabis Dependence | 1 | CTD_human |
Hgene | CALM2 | C0009171 | Cocaine Abuse | 1 | CTD_human |
Hgene | CALM2 | C0018614 | Hashish Abuse | 1 | CTD_human |
Hgene | CALM2 | C0024809 | Marijuana Abuse | 1 | CTD_human |
Hgene | CALM2 | C0031391 | Phencyclidine Abuse | 1 | CTD_human |
Hgene | CALM2 | C0236735 | Cannabis-Related Disorder | 1 | CTD_human |
Hgene | CALM2 | C0236736 | Cocaine-Related Disorders | 1 | CTD_human |
Hgene | CALM2 | C0236742 | Phencyclidine-Related Disorders | 1 | CTD_human |
Hgene | CALM2 | C0588008 | Severe depression | 1 | PSYGENET |
Hgene | CALM2 | C0600427 | Cocaine Dependence | 1 | CTD_human |
Hgene | CALM2 | C1142166 | Brugada Syndrome (disorder) | 1 | ORPHANET |
Hgene | CALM2 | C1631597 | VENTRICULAR TACHYCARDIA, CATECHOLAMINERGIC POLYMORPHIC, 1 (disorder) | 1 | ORPHANET |