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 | Fusion Gene Summary |
| Fusion Gene ORF analysis |
| Fusion Genomic Features |
| Fusion Protein Features |
| Fusion Gene Sequence |
| Fusion Gene PPI analysis |
| Related Drugs |
| Related Diseases |
Fusion gene:DDX21-CUTA (FusionGDB2 ID:HG9188TG51596) |
Fusion Gene Summary for DDX21-CUTA |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: DDX21-CUTA | Fusion gene ID: hg9188tg51596 | Hgene | Tgene | Gene symbol | DDX21 | CUTA | Gene ID | 9188 | 51596 |
| Gene name | DExD-box helicase 21 | cutA divalent cation tolerance homolog | |
| Synonyms | GUA|GURDB|RH-II/GU|RH-II/GuA | ACHAP|C6orf82 | |
| Cytomap | ('DDX21')('CUTA') 10q22.1 | 6p21.32 | |
| Type of gene | protein-coding | protein-coding | |
| Description | nucleolar RNA helicase 2DEAD (Asp-Glu-Ala-Asp) box helicase 21DEAD (Asp-Glu-Ala-Asp) box polypeptide 21DEAD box protein 21DEAD-box helicase 21DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 21Gu proteinRH II/GuRNA helicase II/Gu alphagu-alphanucleo | protein CutAacetylcholinesterase-associated proteinbrain acetylcholinesterase putative membrane anchordivalent cation tolerant protein CUTA | |
| Modification date | 20200313 | 20200320 | |
| UniProtAcc | Q9NR30 | . | |
| Ensembl transtripts involved in fusion gene | ENST00000354185, | ||
| Fusion gene scores | * DoF score | 11 X 11 X 2=242 | 3 X 3 X 2=18 |
| # samples | 12 | 3 | |
| ** MAII score | log2(12/242*10)=-1.01197264166608 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: DDX21 [Title/Abstract] AND CUTA [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint | DDX21(70742480)-CUTA(33385402), # samples:1 | ||
| Anticipated loss of major functional domain due to fusion event. | DDX21-CUTA seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. DDX21-CUTA seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. DDX21-CUTA seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. DDX21-CUTA seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. DDX21-CUTA seems lost the major protein functional domain in Hgene partner, which is a epigenetic factor due to the frame-shifted ORF. DDX21-CUTA seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. | ||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Tgene | CUTA | GO:0008104 | protein localization | 10800960 |
| Fusion gene breakpoints across DDX21 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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| Fusion gene breakpoints across CUTA (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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| Fusion gene information * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
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Fusion Gene ORF analysis for DDX21-CUTA |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
| ENST00000354185 | ENST00000494751 | DDX21 | chr10 | 70742480 | + | CUTA | chr6 | 33385402 | - | 0.000188878 | 0.9998111 |
| ENST00000354185 | ENST00000374496 | DDX21 | chr10 | 70742480 | + | CUTA | chr6 | 33385402 | - | 0.000192961 | 0.99980706 |
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Fusion Genomic Features for DDX21-CUTA |
| FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
| Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
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Fusion Protein Features for DDX21-CUTA |
| Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr10:70742480/chr6:33385402) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| DDX21 | . |
| FUNCTION: RNA helicase that acts as a sensor of the transcriptional status of both RNA polymerase (Pol) I and II: promotes ribosomal RNA (rRNA) processing and transcription from polymerase II (Pol II) (PubMed:25470060, PubMed:28790157). Binds various RNAs, such as rRNAs, snoRNAs, 7SK and, at lower extent, mRNAs (PubMed:25470060). In the nucleolus, localizes to rDNA locus, where it directly binds rRNAs and snoRNAs, and promotes rRNA transcription, processing and modification. Required for rRNA 2'-O-methylation, possibly by promoting the recruitment of late-acting snoRNAs SNORD56 and SNORD58 with pre-ribosomal complexes (PubMed:25470060, PubMed:25477391). In the nucleoplasm, binds 7SK RNA and is recruited to the promoters of Pol II-transcribed genes: acts by facilitating the release of P-TEFb from inhibitory 7SK snRNP in a manner that is dependent on its helicase activity, thereby promoting transcription of its target genes (PubMed:25470060). Functions as cofactor for JUN-activated transcription: required for phosphorylation of JUN at 'Ser-77' (PubMed:11823437, PubMed:25260534). Can unwind double-stranded RNA (helicase) and can fold or introduce a secondary structure to a single-stranded RNA (foldase) (PubMed:9461305). Together with SIRT7, required to prevent R-loop-associated DNA damage and transcription-associated genomic instability: deacetylation by SIRT7 activates the helicase activity, thereby overcoming R-loop-mediated stalling of RNA polymerases (PubMed:28790157). Involved in rRNA processing (PubMed:14559904, PubMed:18180292). May bind to specific miRNA hairpins (PubMed:28431233). Component of a multi-helicase-TICAM1 complex that acts as a cytoplasmic sensor of viral double-stranded RNA (dsRNA) and plays a role in the activation of a cascade of antiviral responses including the induction of proinflammatory cytokines via the adapter molecule TICAM1 (By similarity). {ECO:0000250|UniProtKB:Q9JIK5, ECO:0000269|PubMed:11823437, ECO:0000269|PubMed:14559904, ECO:0000269|PubMed:18180292, ECO:0000269|PubMed:25260534, ECO:0000269|PubMed:25470060, ECO:0000269|PubMed:25477391, ECO:0000269|PubMed:28431233, ECO:0000269|PubMed:28790157, ECO:0000269|PubMed:9461305}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | CUTA | chr10:70742480 | chr6:33385402 | ENST00000374496 | 0 | 6 | 34_37 | 0 | 157.0 | Compositional bias | Note=Poly-Leu | |
| Tgene | CUTA | chr10:70742480 | chr6:33385402 | ENST00000374500 | 0 | 6 | 34_37 | 0 | 199.0 | Compositional bias | Note=Poly-Leu | |
| Tgene | CUTA | chr10:70742480 | chr6:33385402 | ENST00000435267 | 0 | 6 | 34_37 | 0 | 199.0 | Compositional bias | Note=Poly-Leu | |
| Tgene | CUTA | chr10:70742480 | chr6:33385402 | ENST00000440279 | 0 | 5 | 34_37 | 0 | 157.0 | Compositional bias | Note=Poly-Leu | |
| Tgene | CUTA | chr10:70742480 | chr6:33385402 | ENST00000440930 | 0 | 6 | 34_37 | 0 | 180.0 | Compositional bias | Note=Poly-Leu | |
| Tgene | CUTA | chr10:70742480 | chr6:33385402 | ENST00000487148 | 0 | 5 | 34_37 | 0 | 157.0 | Compositional bias | Note=Poly-Leu | |
| Tgene | CUTA | chr10:70742480 | chr6:33385402 | ENST00000488034 | 0 | 6 | 34_37 | 0 | 180.0 | Compositional bias | Note=Poly-Leu | |
| Tgene | CUTA | chr10:70742480 | chr6:33385402 | ENST00000607266 | 0 | 6 | 34_37 | 0 | 157.0 | Compositional bias | Note=Poly-Leu | |
| Tgene | CUTA | chr10:70742480 | chr6:33385402 | ENST00000374496 | 0 | 6 | 168_176 | 0 | 157.0 | Region | Note=O-glycosylated at one site | |
| Tgene | CUTA | chr10:70742480 | chr6:33385402 | ENST00000374500 | 0 | 6 | 168_176 | 0 | 199.0 | Region | Note=O-glycosylated at one site | |
| Tgene | CUTA | chr10:70742480 | chr6:33385402 | ENST00000435267 | 0 | 6 | 168_176 | 0 | 199.0 | Region | Note=O-glycosylated at one site | |
| Tgene | CUTA | chr10:70742480 | chr6:33385402 | ENST00000440279 | 0 | 5 | 168_176 | 0 | 157.0 | Region | Note=O-glycosylated at one site | |
| Tgene | CUTA | chr10:70742480 | chr6:33385402 | ENST00000440930 | 0 | 6 | 168_176 | 0 | 180.0 | Region | Note=O-glycosylated at one site | |
| Tgene | CUTA | chr10:70742480 | chr6:33385402 | ENST00000487148 | 0 | 5 | 168_176 | 0 | 157.0 | Region | Note=O-glycosylated at one site | |
| Tgene | CUTA | chr10:70742480 | chr6:33385402 | ENST00000488034 | 0 | 6 | 168_176 | 0 | 180.0 | Region | Note=O-glycosylated at one site | |
| Tgene | CUTA | chr10:70742480 | chr6:33385402 | ENST00000607266 | 0 | 6 | 168_176 | 0 | 157.0 | Region | Note=O-glycosylated at one site |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | DDX21 | chr10:70742480 | chr6:33385402 | ENST00000354185 | + | 1 | 15 | 217_396 | 0 | 784.0 | Domain | Helicase ATP-binding |
| Hgene | DDX21 | chr10:70742480 | chr6:33385402 | ENST00000354185 | + | 1 | 15 | 429_573 | 0 | 784.0 | Domain | Helicase C-terminal |
| Hgene | DDX21 | chr10:70742480 | chr6:33385402 | ENST00000354185 | + | 1 | 15 | 186_214 | 0 | 784.0 | Motif | Q motif |
| Hgene | DDX21 | chr10:70742480 | chr6:33385402 | ENST00000354185 | + | 1 | 15 | 339_342 | 0 | 784.0 | Motif | DEAD box |
| Hgene | DDX21 | chr10:70742480 | chr6:33385402 | ENST00000354185 | + | 1 | 15 | 230_237 | 0 | 784.0 | Nucleotide binding | ATP |
| Hgene | DDX21 | chr10:70742480 | chr6:33385402 | ENST00000354185 | + | 1 | 15 | 724_748 | 0 | 784.0 | Region | Note=3 X 5 AA repeats |
| Hgene | DDX21 | chr10:70742480 | chr6:33385402 | ENST00000354185 | + | 1 | 15 | 724_728 | 0 | 784.0 | Repeat | Note=1 |
| Hgene | DDX21 | chr10:70742480 | chr6:33385402 | ENST00000354185 | + | 1 | 15 | 734_738 | 0 | 784.0 | Repeat | Note=2 |
| Hgene | DDX21 | chr10:70742480 | chr6:33385402 | ENST00000354185 | + | 1 | 15 | 744_748 | 0 | 784.0 | Repeat | Note=3 |
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Fusion Gene Sequence for DDX21-CUTA |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
| >21930_21930_1_DDX21-CUTA_DDX21_chr10_70742480_ENST00000354185_CUTA_chr6_33385402_ENST00000374496_length(transcript)=4988nt_BP=4529nt GGGAAGTGACGAGAGCCGGGTGGACCCAGGGTGGGGAACTACCTCTTCCTCTCCACGCGGTTGAGAAGACCGGTCGGCCTGGGCAACCTG CGCTGAAGATGCCGGGAAAACTCCGTAGTGACGCTGGTTTGGAATCAGACACCGCAATGAAAAAAGGGGAGACACTGCGAAAGCAAACCG AGGAGAAAGAGAAAAAAGAGAAGCCAAAATCTGATAAGACTGAAGAGATAGCAGAAGAGGAAGAAACTGTTTTCCCCAAAGCTAAACAAG TTAAAAAGAAAGCAGAGCCTTCTGAAGTTGACATGAATTCTCCTAAATCCAAAAAGGCAAAAAAGAAAGAGGAGCCATCTCAAAATGACA TTTCTCCTAAAACCAAAAGTTTGAGAAAGAAAAAGGAGCCCATTGAAAAGAAAGTGGTTTCTTCTAAAACCAAAAAAGTGACAAAAAATG AGGAGCCTTCTGAGGAAGAAATAGATGCTCCTAAGCCCAAGAAGATGAAGAAAGAAAAGGAAATGAATGGAGAAACTAGAGAGAAAAGCC CCAAACTGAAGAATGGATTTCCTCATCCTGAACCGGACTGTAACCCCAGTGAAGCTGCCAGTGAAGAAAGTAACAGTGAGATAGAGCAGG AAATACCTGTGGAACAAAAAGAAGGCGCTTTCTCTAATTTTCCCATATCTGAAGAAACTATTAAACTTCTCAAAGGCCGAGGAGTGACCT TCCTATTTCCTATACAAGCAAAGACATTCCATCATGTTTACAGCGGGAAGGACTTAATTGCACAGGCACGGACAGGAACTGGGAAGACAT TCTCCTTTGCCATCCCTTTGATTGAGAAACTTCATGGGGAACTGCAAGACAGGAAGAGAGGCCGTGCCCCTCAGGTACTGGTTCTTGCAC CTACAAGAGAGTTGGCAAATCAAGTAAGCAAAGACTTCAGTGACATCACAAAAAAGCTGTCAGTGGCTTGTTTTTATGGTGGAACTCCCT ATGGAGGTCAATTTGAACGCATGAGGAATGGGATTGATATCCTGGTTGGAACACCAGGTCGTATCAAAGACCACATACAGAATGGCAAAC TAGATCTCACCAAACTTAAGCATGTTGTCCTGGATGAAGTGGACCAGATGTTGGATATGGGATTTGCTGATCAAGTGGAAGAGATTTTAA GTGTGGCATACAAGAAAGATTCTGAAGACAATCCCCAAACATTGCTTTTTTCTGCAACTTGCCCTCATTGGGTATTTAATGTTGCCAAGA AATACATGAAATCTACATATGAACAGGTGGACCTGATTGGTAAAAAGACTCAGAAAACGGCAATAACTGTGGAGCATCTGGCTATTAAGT GCCACTGGACTCAGAGGGCAGCAGTTATTGGGGATGTCATCCGAGTATATAGTGGTCATCAAGGACGCACTATCATCTTTTGTGAAACCA AGAAAGAAGCCCAGGAGCTGTCCCAGAATTCAGCTATAAAGCAGGATGCTCAGTCCTTGCATGGAGACATTCCACAGAAGCAAAGGGAAA TCACCCTGAAAGGTTTTAGAAATGGTAGTTTTGGAGTTTTGGTGGCAACCAATGTTGCTGCACGTGGGTTAGACATCCCTGAGGTTGATT TGGTTATACAAAGCTCTCCACCAAAGGATGTAGAGTCCTACATTCATCGATCCGGGCGGACAGGCAGAGCTGGAAGGACGGGGGTGTGCA TCTGCTTTTATCAGCACAAGGAAGAATATCAGTTAGTACAAGTGGAGCAAAAAGCGGGAATTAAGTTCAAACGAATAGGTGTTCCTTCTG CAACAGAAATAATAAAAGCTTCCAGCAAAGATGCCATCAGGCTTTTGGATTCCGTGCCTCCCACTGCCATTAGTCACTTCAAACAATCAG CTGAGAAGCTGATAGAGGAGAAGGGAGCTGTGGAAGCTCTGGCAGCAGCACTGGCCCATATTTCAGGTGCCACGTCCGTAGACCAGCGCT CCTTGATCAACTCAAATGTGGGTTTTGTGACCATGATCTTGCAGTGCTCAATTGAAATGCCAAATATTAGTTATGCTTGGAAAGAACTTA AAGAGCAGCTGGGCGAGGAGATTGATTCCAAAGTGAAGGGAATGGTTTTTCTCAAAGGAAAGCTGGGTGTTTGCTTTGATGTACCTACCG CATCAGTAACAGAAATACAGAGGACAGCGATCAGGAGGTGGCAACAAAAGTAACAGATCCCAAAACAAAGGCCAGAAGCGGAGTTTCAGT AAAGCATTTGGTCAATAATTAGAAATAGAAGATTTATATAGCAAAAAGAGAATGATGTTTGGCAATATAGAACTGAACATTATTTTTCAT GCAAAGTTAAAAGCACATTGTGCCTCCTTTTGACCACTTGCCAAGTCCCTGTCTCTTTCAGACACAGACAAGCTTCATTTAAATTATTTC ATCTGATCATTATCATTTATAACTTTATTGTTACTTCTTCATCAGTTTTTCCTTTTGAAAGGTGTATGAATTCATTACATTTTTATTCTA ATGTATTATCTGTAGATTAGAAGATAAAATCAAGCATGTATCTGCCTATACTTTGTGAGTTCACCTGTCTTTATACTCAAAAGTGTCCCT TAATAGTGTCCTTCCCTGAAATAAATACCTAAGGGAGTGTAACAGTCTCTGGAGGACCACTTTGAGCCTTTGGAAGTTAAGGTTTCCTCA GCCACCTGCCGAACAGTTTCTCATGTGGTCCTATTATTTGTCTACTGAGACTTAATACTGAGCAATGTTTTGAAACAAGATTTCAAACTA ATCTGGGTTGTAATACAGTTTATACCAGTGTATGCTCTAGACTTGGAAGATGTAGTATGTTTGATGTGGATTACCTATACTTATGTTCGT TTTGATACATTTTTAGCTTCTCATTATAAGGTGATTCATGCTTTAGTGAATTCTTCATAGATAGTATATATAAAAGTACATTTTAATAGA AAGCCAGGGTTTTAAGGAATTTCACATGTATAAGGTGGCTCCATAGCTTTATTTGTAAGTAGGCTGGATAAATGGTGCTTAAATGGTAAT GTACTCCACTTCTTCCTATTGGAAGATTAACATTATTTACCAAGAAGGACTTAAGGGAGTAGGGGGCGCAGATTAGCATTGCTCAAGAGT ATGTAAAAAAAAAAAAAAAAAAAAAGAACCAAACCACTGGAAATAATCAAATGCAAAAAGGTAACAAATTCATAACTGGAAAGCAAAGAG AAGAACAAGTATGATTTGGATGATAAAGCATTGTTTTAATGGTGAAAACTTCACAGATCACTAATGTTTCTAGAGGTTAACTTCAAGTGG GCAAGCTGGGGTTTTTAGGTAGTCAGTGGCCTAGTTCCTAAAGCCACAGTATAGGATCTGTTAAACTGAATGTCTGTTGAAAGTTTGTTT TAGCTGCTTGGAGGCTTCCTTTTAAGACAAACTGTATGTGATTAAGTTGTTTTGAGGGAACTGAAGAACCTGATGTAGCCCCTGGCCAGA TAACTGCCTGATTTCTCAGATATTATTTCTCTGGGAAACATTCTACATAGCACAGGAGCTTAAGAGTGGCATTATCTTCTCGCCTTAATT TCCAGAGATTATTTCTGTACTGAGAATCCTGGAACTACTATGCTAGGAAATTTAAAGCTGCATGGTCTGTCTTGTTTTCATTTAATTATT GTGAATACCTAGAATCTTTCTTGGTCCTGATTTCTCTTGCTTAATCCAGTCTTTATCTCTAACTGCCCCTTATTTGATCACCATGTACTA GGAGCTCTGATAGCCAGCTCAGCTCCTAATCCTTGAGGCAACATTCTTTTTCTATTTGAACTTCAGTTCTGTCCTTGAATCCCGACTAGA TATTTCTTGCCCTCTGGTCTCAGAATTCTCTTGGCTTTTATTCCTTGATCCACTTGCCAGTTTTATCACTTTACCCTTGTTCCTCATGGC TTCCCATCAAGCCATGGGTATTAGGTGACAGTGTAATTTATTAGATTCTGGTTTTGCCCAAATACTGGGCATGCTTTAATAATAACTGAA CCATTTCATTATTTGGATAGGCATGGGTACCTTATCAAGCAGATTAAAAGGATATGGTACCCGTCCTTTAGAAAAGAACAGCTAAAACCT TGTTGTGGATTATGGATTTAGCCTAAAGAAAAATAATCTGGCATAAATTAAGAGTAAGAGAGAAGATTAATAGAAATTTCACTTCACATA ACTTAAAACATGGCTATTTCAATAAAGGACTAAAGTTTCTCCTGGATCCCAGAATTCAACCTGTATTTATAAATGTATAATGTATTTAGC TACTTTTTGGTTTAAATGAACTTGTTGGGTTAGCTTGGTAAATGTTATAATTTTTACTATTTTCTACAAAGAAAATATTTTCTAATTTAA GTTGGAGCTATCTGTGCAGCAGTTTCTCTACAGTTGTGCATAAATGTTTTTACTATAAAATGAGCTAATGTATAAAATACTGCTGTATAC CATAATAAAGATAGTAATACTTGATTTTATTCTGTGCACCCTTACGAAGTGGCCGAGGTAATTGCATTGCCTGTGGAACAGGGGAACTTT CCGTACCTGCAGTGGGTGCGCCAGGTCACAGAGTCAGTTTCTGACTCTATCACAGTCCTGCCATGATGAGCCCTGTTCCTGCTCATCATG AAGATCCATGATTAAAACCCAAAGTTCCTTGGTCCCAGCTTTGACAGATTTTGTTCGCTATGAGTGGAAAGGGAAGATCGAGGAAGACAG TGAGGTGCTGATGGGCCGTGGTGGAGAAGCGCCTAGCAGCCTGCGTCAACCTCATCCCTCAGATTACATCCATCCCGAGTCTTGCTGACC ATGGCCTCTGGAAGCCCTCCGACCCAGCCCTCGCCGGCCTCGGATTCCGGCTCTGGCTACGTTCCGGGCTCGGTCTCTGCAGCCTTTGTT >21930_21930_1_DDX21-CUTA_DDX21_chr10_70742480_ENST00000354185_CUTA_chr6_33385402_ENST00000374496_length(amino acids)=706AA_BP= MKMPGKLRSDAGLESDTAMKKGETLRKQTEEKEKKEKPKSDKTEEIAEEEETVFPKAKQVKKKAEPSEVDMNSPKSKKAKKKEEPSQNDI SPKTKSLRKKKEPIEKKVVSSKTKKVTKNEEPSEEEIDAPKPKKMKKEKEMNGETREKSPKLKNGFPHPEPDCNPSEAASEESNSEIEQE IPVEQKEGAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLHGELQDRKRGRAPQVLVLAP TRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILS VAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETK KEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCI CFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATSVDQRS -------------------------------------------------------------- >21930_21930_2_DDX21-CUTA_DDX21_chr10_70742480_ENST00000354185_CUTA_chr6_33385402_ENST00000494751_length(transcript)=4969nt_BP=4529nt GGGAAGTGACGAGAGCCGGGTGGACCCAGGGTGGGGAACTACCTCTTCCTCTCCACGCGGTTGAGAAGACCGGTCGGCCTGGGCAACCTG CGCTGAAGATGCCGGGAAAACTCCGTAGTGACGCTGGTTTGGAATCAGACACCGCAATGAAAAAAGGGGAGACACTGCGAAAGCAAACCG AGGAGAAAGAGAAAAAAGAGAAGCCAAAATCTGATAAGACTGAAGAGATAGCAGAAGAGGAAGAAACTGTTTTCCCCAAAGCTAAACAAG TTAAAAAGAAAGCAGAGCCTTCTGAAGTTGACATGAATTCTCCTAAATCCAAAAAGGCAAAAAAGAAAGAGGAGCCATCTCAAAATGACA TTTCTCCTAAAACCAAAAGTTTGAGAAAGAAAAAGGAGCCCATTGAAAAGAAAGTGGTTTCTTCTAAAACCAAAAAAGTGACAAAAAATG AGGAGCCTTCTGAGGAAGAAATAGATGCTCCTAAGCCCAAGAAGATGAAGAAAGAAAAGGAAATGAATGGAGAAACTAGAGAGAAAAGCC CCAAACTGAAGAATGGATTTCCTCATCCTGAACCGGACTGTAACCCCAGTGAAGCTGCCAGTGAAGAAAGTAACAGTGAGATAGAGCAGG AAATACCTGTGGAACAAAAAGAAGGCGCTTTCTCTAATTTTCCCATATCTGAAGAAACTATTAAACTTCTCAAAGGCCGAGGAGTGACCT TCCTATTTCCTATACAAGCAAAGACATTCCATCATGTTTACAGCGGGAAGGACTTAATTGCACAGGCACGGACAGGAACTGGGAAGACAT TCTCCTTTGCCATCCCTTTGATTGAGAAACTTCATGGGGAACTGCAAGACAGGAAGAGAGGCCGTGCCCCTCAGGTACTGGTTCTTGCAC CTACAAGAGAGTTGGCAAATCAAGTAAGCAAAGACTTCAGTGACATCACAAAAAAGCTGTCAGTGGCTTGTTTTTATGGTGGAACTCCCT ATGGAGGTCAATTTGAACGCATGAGGAATGGGATTGATATCCTGGTTGGAACACCAGGTCGTATCAAAGACCACATACAGAATGGCAAAC TAGATCTCACCAAACTTAAGCATGTTGTCCTGGATGAAGTGGACCAGATGTTGGATATGGGATTTGCTGATCAAGTGGAAGAGATTTTAA GTGTGGCATACAAGAAAGATTCTGAAGACAATCCCCAAACATTGCTTTTTTCTGCAACTTGCCCTCATTGGGTATTTAATGTTGCCAAGA AATACATGAAATCTACATATGAACAGGTGGACCTGATTGGTAAAAAGACTCAGAAAACGGCAATAACTGTGGAGCATCTGGCTATTAAGT GCCACTGGACTCAGAGGGCAGCAGTTATTGGGGATGTCATCCGAGTATATAGTGGTCATCAAGGACGCACTATCATCTTTTGTGAAACCA AGAAAGAAGCCCAGGAGCTGTCCCAGAATTCAGCTATAAAGCAGGATGCTCAGTCCTTGCATGGAGACATTCCACAGAAGCAAAGGGAAA TCACCCTGAAAGGTTTTAGAAATGGTAGTTTTGGAGTTTTGGTGGCAACCAATGTTGCTGCACGTGGGTTAGACATCCCTGAGGTTGATT TGGTTATACAAAGCTCTCCACCAAAGGATGTAGAGTCCTACATTCATCGATCCGGGCGGACAGGCAGAGCTGGAAGGACGGGGGTGTGCA TCTGCTTTTATCAGCACAAGGAAGAATATCAGTTAGTACAAGTGGAGCAAAAAGCGGGAATTAAGTTCAAACGAATAGGTGTTCCTTCTG CAACAGAAATAATAAAAGCTTCCAGCAAAGATGCCATCAGGCTTTTGGATTCCGTGCCTCCCACTGCCATTAGTCACTTCAAACAATCAG CTGAGAAGCTGATAGAGGAGAAGGGAGCTGTGGAAGCTCTGGCAGCAGCACTGGCCCATATTTCAGGTGCCACGTCCGTAGACCAGCGCT CCTTGATCAACTCAAATGTGGGTTTTGTGACCATGATCTTGCAGTGCTCAATTGAAATGCCAAATATTAGTTATGCTTGGAAAGAACTTA AAGAGCAGCTGGGCGAGGAGATTGATTCCAAAGTGAAGGGAATGGTTTTTCTCAAAGGAAAGCTGGGTGTTTGCTTTGATGTACCTACCG CATCAGTAACAGAAATACAGAGGACAGCGATCAGGAGGTGGCAACAAAAGTAACAGATCCCAAAACAAAGGCCAGAAGCGGAGTTTCAGT AAAGCATTTGGTCAATAATTAGAAATAGAAGATTTATATAGCAAAAAGAGAATGATGTTTGGCAATATAGAACTGAACATTATTTTTCAT GCAAAGTTAAAAGCACATTGTGCCTCCTTTTGACCACTTGCCAAGTCCCTGTCTCTTTCAGACACAGACAAGCTTCATTTAAATTATTTC ATCTGATCATTATCATTTATAACTTTATTGTTACTTCTTCATCAGTTTTTCCTTTTGAAAGGTGTATGAATTCATTACATTTTTATTCTA ATGTATTATCTGTAGATTAGAAGATAAAATCAAGCATGTATCTGCCTATACTTTGTGAGTTCACCTGTCTTTATACTCAAAAGTGTCCCT TAATAGTGTCCTTCCCTGAAATAAATACCTAAGGGAGTGTAACAGTCTCTGGAGGACCACTTTGAGCCTTTGGAAGTTAAGGTTTCCTCA GCCACCTGCCGAACAGTTTCTCATGTGGTCCTATTATTTGTCTACTGAGACTTAATACTGAGCAATGTTTTGAAACAAGATTTCAAACTA ATCTGGGTTGTAATACAGTTTATACCAGTGTATGCTCTAGACTTGGAAGATGTAGTATGTTTGATGTGGATTACCTATACTTATGTTCGT TTTGATACATTTTTAGCTTCTCATTATAAGGTGATTCATGCTTTAGTGAATTCTTCATAGATAGTATATATAAAAGTACATTTTAATAGA AAGCCAGGGTTTTAAGGAATTTCACATGTATAAGGTGGCTCCATAGCTTTATTTGTAAGTAGGCTGGATAAATGGTGCTTAAATGGTAAT GTACTCCACTTCTTCCTATTGGAAGATTAACATTATTTACCAAGAAGGACTTAAGGGAGTAGGGGGCGCAGATTAGCATTGCTCAAGAGT ATGTAAAAAAAAAAAAAAAAAAAAAGAACCAAACCACTGGAAATAATCAAATGCAAAAAGGTAACAAATTCATAACTGGAAAGCAAAGAG AAGAACAAGTATGATTTGGATGATAAAGCATTGTTTTAATGGTGAAAACTTCACAGATCACTAATGTTTCTAGAGGTTAACTTCAAGTGG GCAAGCTGGGGTTTTTAGGTAGTCAGTGGCCTAGTTCCTAAAGCCACAGTATAGGATCTGTTAAACTGAATGTCTGTTGAAAGTTTGTTT TAGCTGCTTGGAGGCTTCCTTTTAAGACAAACTGTATGTGATTAAGTTGTTTTGAGGGAACTGAAGAACCTGATGTAGCCCCTGGCCAGA TAACTGCCTGATTTCTCAGATATTATTTCTCTGGGAAACATTCTACATAGCACAGGAGCTTAAGAGTGGCATTATCTTCTCGCCTTAATT TCCAGAGATTATTTCTGTACTGAGAATCCTGGAACTACTATGCTAGGAAATTTAAAGCTGCATGGTCTGTCTTGTTTTCATTTAATTATT GTGAATACCTAGAATCTTTCTTGGTCCTGATTTCTCTTGCTTAATCCAGTCTTTATCTCTAACTGCCCCTTATTTGATCACCATGTACTA GGAGCTCTGATAGCCAGCTCAGCTCCTAATCCTTGAGGCAACATTCTTTTTCTATTTGAACTTCAGTTCTGTCCTTGAATCCCGACTAGA TATTTCTTGCCCTCTGGTCTCAGAATTCTCTTGGCTTTTATTCCTTGATCCACTTGCCAGTTTTATCACTTTACCCTTGTTCCTCATGGC TTCCCATCAAGCCATGGGTATTAGGTGACAGTGTAATTTATTAGATTCTGGTTTTGCCCAAATACTGGGCATGCTTTAATAATAACTGAA CCATTTCATTATTTGGATAGGCATGGGTACCTTATCAAGCAGATTAAAAGGATATGGTACCCGTCCTTTAGAAAAGAACAGCTAAAACCT TGTTGTGGATTATGGATTTAGCCTAAAGAAAAATAATCTGGCATAAATTAAGAGTAAGAGAGAAGATTAATAGAAATTTCACTTCACATA ACTTAAAACATGGCTATTTCAATAAAGGACTAAAGTTTCTCCTGGATCCCAGAATTCAACCTGTATTTATAAATGTATAATGTATTTAGC TACTTTTTGGTTTAAATGAACTTGTTGGGTTAGCTTGGTAAATGTTATAATTTTTACTATTTTCTACAAAGAAAATATTTTCTAATTTAA GTTGGAGCTATCTGTGCAGCAGTTTCTCTACAGTTGTGCATAAATGTTTTTACTATAAAATGAGCTAATGTATAAAATACTGCTGTATAC CATAATAAAGATAGTAATACTTGATTTTATCCTGCCATGATGAGCCCTGTTCCTGCTCATCATGAAGATCCCCGCGATACTTCAACGCCT TCTGACTTCCAGGTGATGACTGGGCCCCCAATAAATCCCGTCTTTGGGTCTTCTGTGCACCCTTACGAAGTGGCCGAGATGATTAAAACC CAAAGTTCCTTGGTCCCAGCTTTGACAGATTTTGTTCGCTATGAGTGGAAAGGGAAGATCGAGGAAGACAGTGAGGTGCTGATGGGCCGT GGTGGAGAAGCGCCTAGCAGCCTGCGTCAACCTCATCCCTCAGATTACATCCATCCCGAGTCTTGCTGACCATGGCCTCTGGAAGCCCTC CGACCCAGCCCTCGCCGGCCTCGGATTCCGGCTCTGGCTACGTTCCGGGCTCGGTCTCTGCAGCCTTTGTTACTTGCCCCAACGAGAAGG >21930_21930_2_DDX21-CUTA_DDX21_chr10_70742480_ENST00000354185_CUTA_chr6_33385402_ENST00000494751_length(amino acids)=706AA_BP= MKMPGKLRSDAGLESDTAMKKGETLRKQTEEKEKKEKPKSDKTEEIAEEEETVFPKAKQVKKKAEPSEVDMNSPKSKKAKKKEEPSQNDI SPKTKSLRKKKEPIEKKVVSSKTKKVTKNEEPSEEEIDAPKPKKMKKEKEMNGETREKSPKLKNGFPHPEPDCNPSEAASEESNSEIEQE IPVEQKEGAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLHGELQDRKRGRAPQVLVLAP TRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILS VAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETK KEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCI CFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATSVDQRS -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for DDX21-CUTA |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for DDX21-CUTA |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for DDX21-CUTA |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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