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![]() | Fusion Gene Summary |
![]() | Fusion Gene ORF analysis |
![]() | Fusion Genomic Features |
![]() | Fusion Protein Features |
![]() | Fusion Gene Sequence |
![]() | Fusion Gene PPI analysis |
![]() | Related Drugs |
![]() | Related Diseases |
Fusion gene:CHMP4C-ITGB1 (FusionGDB2 ID:HG92421TG3688) |
Fusion Gene Summary for CHMP4C-ITGB1 |
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Fusion gene information | Fusion gene name: CHMP4C-ITGB1 | Fusion gene ID: hg92421tg3688 | Hgene | Tgene | Gene symbol | CHMP4C | ITGB1 | Gene ID | 92421 | 3688 |
Gene name | charged multivesicular body protein 4C | integrin subunit beta 1 | |
Synonyms | SNF7-3|Shax3|VPS32C | CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB | |
Cytomap | ('CHMP4C')('ITGB1') 8q21.13 | 10p11.22 | |
Type of gene | protein-coding | protein-coding | |
Description | charged multivesicular body protein 4cSNF7 homolog associated with Alix 3Snf7 homologue associated with Alix 3chromatin modifying protein 4Cchromatin-modifying protein 4chSnf7-3hVps32-3vacuolar protein sorting-associated protein 32-3vps32-3 | integrin beta-1glycoprotein IIaintegrin VLA-4 beta subunitintegrin beta 1integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)very late activation protein, beta polypeptide | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000297265, | ||
Fusion gene scores | * DoF score | 2 X 1 X 2=4 | 6 X 7 X 3=126 |
# samples | 2 | 7 | |
** MAII score | log2(2/4*10)=2.32192809488736 | log2(7/126*10)=-0.84799690655495 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: CHMP4C [Title/Abstract] AND ITGB1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | CHMP4C(82645051)-ITGB1(33190563), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | ITGB1 | GO:0007155 | cell adhesion | 19703720 |
Tgene | ITGB1 | GO:0007159 | leukocyte cell-cell adhesion | 1715889 |
Tgene | ITGB1 | GO:0007229 | integrin-mediated signaling pathway | 31331973 |
Tgene | ITGB1 | GO:0010710 | regulation of collagen catabolic process | 10455171 |
Tgene | ITGB1 | GO:0010763 | positive regulation of fibroblast migration | 26763945 |
Tgene | ITGB1 | GO:0023035 | CD40 signaling pathway | 31331973 |
Tgene | ITGB1 | GO:0033627 | cell adhesion mediated by integrin | 12807887|17158881 |
Tgene | ITGB1 | GO:0051897 | positive regulation of protein kinase B signaling | 24044949 |
Tgene | ITGB1 | GO:0090303 | positive regulation of wound healing | 26763945 |
Tgene | ITGB1 | GO:1903078 | positive regulation of protein localization to plasma membrane | 10455171 |
Tgene | ITGB1 | GO:2000273 | positive regulation of signaling receptor activity | 24044949 |
![]() * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | BLCA | TCGA-4Z-AA7Q-01A | CHMP4C | chr8 | 82645051 | + | ITGB1 | chr10 | 33190563 | - |
ChimerDB4 | BLCA | TCGA-4Z-AA7Q | CHMP4C | chr8 | 82645051 | + | ITGB1 | chr10 | 33190563 | - |
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Fusion Gene ORF analysis for CHMP4C-ITGB1 |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-3UTR | ENST00000297265 | ENST00000302278 | CHMP4C | chr8 | 82645051 | + | ITGB1 | chr10 | 33190563 | - |
5CDS-3UTR | ENST00000297265 | ENST00000374956 | CHMP4C | chr8 | 82645051 | + | ITGB1 | chr10 | 33190563 | - |
5CDS-3UTR | ENST00000297265 | ENST00000396033 | CHMP4C | chr8 | 82645051 | + | ITGB1 | chr10 | 33190563 | - |
5CDS-3UTR | ENST00000297265 | ENST00000423113 | CHMP4C | chr8 | 82645051 | + | ITGB1 | chr10 | 33190563 | - |
5CDS-intron | ENST00000297265 | ENST00000484088 | CHMP4C | chr8 | 82645051 | + | ITGB1 | chr10 | 33190563 | - |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
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Fusion Genomic Features for CHMP4C-ITGB1 |
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Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
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Fusion Protein Features for CHMP4C-ITGB1 |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:82645051/:33190563) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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Hgene | Tgene |
. | . |
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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Fusion Gene Sequence for CHMP4C-ITGB1 |
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Fusion Gene PPI Analysis for CHMP4C-ITGB1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for CHMP4C-ITGB1 |
![]() (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for CHMP4C-ITGB1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | CHMP4C | C0919267 | ovarian neoplasm | 2 | CTD_human |
Hgene | CHMP4C | C1140680 | Malignant neoplasm of ovary | 2 | CTD_human |
Tgene | C0006663 | Calcinosis | 1 | CTD_human | |
Tgene | C0007131 | Non-Small Cell Lung Carcinoma | 1 | CTD_human | |
Tgene | C0007137 | Squamous cell carcinoma | 1 | CTD_human | |
Tgene | C0007193 | Cardiomyopathy, Dilated | 1 | CTD_human | |
Tgene | C0014175 | Endometriosis | 1 | CTD_human | |
Tgene | C0017639 | Gliosis | 1 | CTD_human | |
Tgene | C0018801 | Heart failure | 1 | CTD_human | |
Tgene | C0018802 | Congestive heart failure | 1 | CTD_human | |
Tgene | C0023212 | Left-Sided Heart Failure | 1 | CTD_human | |
Tgene | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human | |
Tgene | C0027626 | Neoplasm Invasiveness | 1 | CTD_human | |
Tgene | C0027627 | Neoplasm Metastasis | 1 | CTD_human | |
Tgene | C0033141 | Cardiomyopathies, Primary | 1 | CTD_human | |
Tgene | C0036529 | Myocardial Diseases, Secondary | 1 | CTD_human | |
Tgene | C0235527 | Heart Failure, Right-Sided | 1 | CTD_human | |
Tgene | C0263628 | Tumoral calcinosis | 1 | CTD_human | |
Tgene | C0269102 | Endometrioma | 1 | CTD_human | |
Tgene | C0521174 | Microcalcification | 1 | CTD_human | |
Tgene | C0878544 | Cardiomyopathies | 1 | CTD_human | |
Tgene | C1449563 | Cardiomyopathy, Familial Idiopathic | 1 | CTD_human | |
Tgene | C1959583 | Myocardial Failure | 1 | CTD_human | |
Tgene | C1961112 | Heart Decompensation | 1 | CTD_human | |
Tgene | C3887640 | Astrocytosis | 1 | CTD_human |