![]() |
||||||
|
![]() | Fusion Gene Summary |
![]() | Fusion Gene ORF analysis |
![]() | Fusion Genomic Features |
![]() | Fusion Protein Features |
![]() | Fusion Gene Sequence |
![]() | Fusion Gene PPI analysis |
![]() | Related Drugs |
![]() | Related Diseases |
Fusion gene:KNTC1-AARS (FusionGDB2 ID:HG9735TG16) |
Fusion Gene Summary for KNTC1-AARS |
![]() |
Fusion gene information | Fusion gene name: KNTC1-AARS | Fusion gene ID: hg9735tg16 | Hgene | Tgene | Gene symbol | KNTC1 | AARS | Gene ID | 9735 | 16 |
Gene name | kinetochore associated 1 | alanyl-tRNA synthetase 1 | |
Synonyms | ROD | AARS|CMT2N|EIEE29 | |
Cytomap | ('KNTC1')('AARS') 12q24.31 | 16q22.1 | |
Type of gene | protein-coding | protein-coding | |
Description | kinetochore-associated protein 1Rough Deal homolog, centromere/kinetochore protein | alanine--tRNA ligase, cytoplasmicalaRSalanine tRNA ligase 1, cytoplasmicalanyl-tRNA synthetase, cytoplasmicrenal carcinoma antigen NY-REN-42 | |
Modification date | 20200313 | 20200328 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000333479, ENST00000436959, ENST00000450485, ENST00000534995, ENST00000537348, ENST00000545065, | ||
Fusion gene scores | * DoF score | 10 X 9 X 7=630 | 12 X 12 X 5=720 |
# samples | 10 | 15 | |
** MAII score | log2(10/630*10)=-2.65535182861255 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(15/720*10)=-2.26303440583379 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: KNTC1 [Title/Abstract] AND AARS [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | KNTC1(123060446)-AARS(70293089), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
![]() |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | KNTC1 | GO:0007093 | mitotic cell cycle checkpoint | 11146660 |
Tgene | AARS | GO:0006419 | alanyl-tRNA aminoacylation | 27622773|28493438 |
![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
![]() |
![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
![]() |
![]() * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | GBM | TCGA-27-1834-01A | KNTC1 | chr12 | 123060446 | + | AARS | chr16 | 70293089 | - |
Top |
Fusion Gene ORF analysis for KNTC1-AARS |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-5UTR | ENST00000333479 | ENST00000564359 | KNTC1 | chr12 | 123060446 | + | AARS | chr16 | 70293089 | - |
In-frame | ENST00000333479 | ENST00000261772 | KNTC1 | chr12 | 123060446 | + | AARS | chr16 | 70293089 | - |
intron-3CDS | ENST00000436959 | ENST00000261772 | KNTC1 | chr12 | 123060446 | + | AARS | chr16 | 70293089 | - |
intron-3CDS | ENST00000450485 | ENST00000261772 | KNTC1 | chr12 | 123060446 | + | AARS | chr16 | 70293089 | - |
intron-3CDS | ENST00000534995 | ENST00000261772 | KNTC1 | chr12 | 123060446 | + | AARS | chr16 | 70293089 | - |
intron-3CDS | ENST00000537348 | ENST00000261772 | KNTC1 | chr12 | 123060446 | + | AARS | chr16 | 70293089 | - |
intron-3CDS | ENST00000545065 | ENST00000261772 | KNTC1 | chr12 | 123060446 | + | AARS | chr16 | 70293089 | - |
intron-5UTR | ENST00000436959 | ENST00000564359 | KNTC1 | chr12 | 123060446 | + | AARS | chr16 | 70293089 | - |
intron-5UTR | ENST00000450485 | ENST00000564359 | KNTC1 | chr12 | 123060446 | + | AARS | chr16 | 70293089 | - |
intron-5UTR | ENST00000534995 | ENST00000564359 | KNTC1 | chr12 | 123060446 | + | AARS | chr16 | 70293089 | - |
intron-5UTR | ENST00000537348 | ENST00000564359 | KNTC1 | chr12 | 123060446 | + | AARS | chr16 | 70293089 | - |
intron-5UTR | ENST00000545065 | ENST00000564359 | KNTC1 | chr12 | 123060446 | + | AARS | chr16 | 70293089 | - |
![]() |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000333479 | KNTC1 | chr12 | 123060446 | + | ENST00000261772 | AARS | chr16 | 70293089 | - | 4311 | 2763 | 150 | 3884 | 1244 |
![]() |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000333479 | ENST00000261772 | KNTC1 | chr12 | 123060446 | + | AARS | chr16 | 70293089 | - | 0.000754539 | 0.9992455 |
Top |
Fusion Genomic Features for KNTC1-AARS |
![]() |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
![]() |
![]() |
Top |
Fusion Protein Features for KNTC1-AARS |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr12:123060446/chr16:70293089) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
![]() |
![]() |
Hgene | Tgene |
. | . |
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | AARS | chr12:123060446 | chr16:70293089 | ENST00000261772 | 12 | 21 | 214_216 | 595 | 969.0 | Nucleotide binding | ATP |
Top |
Fusion Gene Sequence for KNTC1-AARS |
![]() |
>43339_43339_1_KNTC1-AARS_KNTC1_chr12_123060446_ENST00000333479_AARS_chr16_70293089_ENST00000261772_length(transcript)=4311nt_BP=2763nt CAATTTAAGCCTGTGGCATGGAACCTAAAGACTAGAGGCGGTTGTGTGAGTCAGGAAGAGGGGCCAGATATCTGAGTGTTCCTCTTTAGT TTCTTCAATTGCAGATAATATGGTGTCTAATTTTATGTTGTTCAGGAAAGACAGTGGTTCCTGACTCAGGAAGACAGTCTCAGAAACATG TGGAATGATATTGAGCTGCTAACAAATGATGATACCGGAAGTGGGTACCTGAGTGTCGGTTCAAGAAAAGAACATGGAACTGCTTTATAT CAAGTAGATTTGCTAGTGAAGATCTCTTCTGAAAAGGCCTCATTAAATCCAAAGATACAGGCATGCAGCTTAAGTGATGGGTTTATTATT GTAGCCGACCAATCAGTGATATTGCTTGACAGTATTTGTAGATCACTTCAATTGCATCTTGTCTTTGATACTGAAGTGGATGTAGTTGGC CTTTGTCAAGAAGGAAAGTTTCTTTTGGTTGGCGAGAGAAGTGGCAACCTACATCTTATTCATGTAACATCAAAACAAACACTACTCACT AATGCATTTGTTCAGAAAGCTAACGATGAAAATCGGCGGACTTACCAGAATCTTGTCATTGAGAAGGATGGTTCAAATGAAGGTACCTAT TATATGCTACTTCTTACATACAGTGGATTTTTTTGTATTACAAACCTTCAGCTTTTAAAAATTCAACAAGCAATTGAGAATGTAGACTTC AGTACAGCAAAAAAGTTACAAGGACAAATCAAGTCCAGTTTTATTTCTACTGAAAATTATCATACTCTTGGTTGTCTCAGTCTTGTGGCT GGAGATTTAGCAAGTGAAGTTCCTGTGATAATTGGGGGAACCGGTAATTGTGCATTCTCAAAATGGGAACCAGATTCTTCCAAGAAAGGA ATGACAGTTAAGAACCTTATTGATGCAGAGATTATTAAAGGTGCAAAGAAGTTCCAGCTGATAGACAATCTACTTTTTGTTCTTGATACT GATAACGTGCTGAGTTTATGGGATATTTACACTCTAACTCCTGTATGGAACTGGCCCTCTCTTCACGTAGAAGAGTTTCTTCTTACTACA GAAGCAGACTCTCCTTCATCAGTCACGTGGCAAGGAATTACAAATCTCAAATTAATAGCTCTGACAGCTTCAGCTAATAAGAAGATGAAA AACCTCATGGTTTATTCATTACCTACAATGGAAATACTATATTCTTTGGAAGTATCTAGTGTTTCTTCTCTGGTCCAAACAGGAATTAGC ACAGATACCATATACCTTTTAGAAGGAGTTTGCAAAAATGATCCAAAATTGTCTGAAGACTCAGTCTCTGTGTTAGTACTCAGATGTCTT ACGGAAGCTTTACCAGAAAACAGATTGAGTCGGTTACTTCACAAACACAGATTTGCTGAAGCTGAGAGTTTTGCCATTCAGTTTGGACTA GATGTTGAGCTTGTTTACAAGGTCAAGTCAAATCATATATTGGAGAAACTGGCATTGAGTTCTGTGGATGCCAGTGAACAGACCGAATGG CAACAACTTGTAGACGACGCTAAGGAAAATCTACATAAGATCCAGGATGATGAATTTGTGGTGAATTACTGCCTGAAAGCTCAGTGGATA ACCTATGAAACCACTCAAGAGATGCTGAATTATGCCAAAACCAGGCTTTTGAAGAAAGAAGATAAAACTGCTCTCATTTATTCTGATGGC TTGAAAGAGGTGCTAAGAGCTCATGCAAAATTGACTACTTTTTATGGAGCATTTGGACCAGAAAAATTCAGTGGCAGTTCTTGGATTGAA TTTCTAAATAATGAAGATGATCTTAAAGATATTTTTTTACAGCTAAAAGAAGGAAACCTTGTTTGTGCACAGTATCTTTGGCTTCGACAT CGGGCAAACTTTGAAAGCAGATTTGATGTGAAAATGCTGGAGAGCTTGCTCAACTCAATGTCTGCATCAGTCTCTTTGCAAAAGCTGTGT CCATGGTTTAAAAATGATGTGATTCCATTTGTAAGAAGGACTGTGCCTGAAGGACAGATAATTCTTGCAAAATGGTTGGAACAAGCAGCC AGGAACCTTGAATTAACTGATAAGGCAAATTGGCCAGAAAATGGACTTCAATTGGCAGAGATATTTTTTACAGCAGAAAAAACAGACGAG TTGGGATTGGCATCTTCCTGGCATTGGATTTCCTTGAAAGATTATCAGAACACAGAGGAAGTATGTCAGCTAAGGACTTTGGTAAATAAC TTGCGAGAGTTGATCACGTTGCATAGGAAGTACAACTGCAAATTAGCCCTCTCTGATTTTGAGAAGGAAAATACAACCACCATAGTGTTC CGAATGTTTGATAAAGTGCTGGCCCCAGAGCTTATTCCCTCCATCTTAGAGAAGTTTATAAGAGTTTACATGAGAGAACATGACTTGCAA GAGGAGGAACTTCTCTTGCTGTACATAGAGGATTTACTGAATAGATGCAGCTCAAAGTCCACATCACTCTTTGAAACAGCATGGGAAGCA AAGGCCATGGCAGTAATAGCGTGTTTATCTGACACGGACCTCATATTTGATGCCGTGCTCAAGATCATGTATGCGGCAGTGGTTCCTTGG AGTGCAGCTGTGGAGCAACTGGTGAAACAGCACCTGGAAATGGACCATCCCAAAGTCAAGTTATTACAGGAAAGTTACAAACTAATGGAG ATGAAAAAACTTTTACGAGGCTATGGAATAAGAGAGGTAAATCTCTTAAACAAGGAAATAATGCCCCGACGAAGACCCATCATGAGCAAC CACACAGCTACGCACATTCTGAACTTCGCCCTGCGCTCAGTGCTTGGGGAAGCTGACCAGAAAGGCTCATTGGTTGCTCCTGACCGCCTC AGATTTGACTTTACTGCCAAGGGAGCCATGTCCACCCAACAGATCAAGAAGGCTGAAGAGATTGCTAATGAGATGATTGAGGCAGCCAAG GCCGTCTATACCCAGGATTGCCCCCTGGCAGCAGCGAAAGCCATCCAGGGCCTACGGGCTGTGTTTGATGAGACCTATCCTGACCCTGTG CGAGTCGTCTCCATTGGGGTCCCGGTGTCCGAGTTGCTGGATGACCCCTCTGGGCCTGCTGGCTCCCTGACTTCTGTTGAGTTCTGTGGG GGAACGCACCTGCGGAACTCGAGTCATGCAGGAGCTTTTGTGATCGTGACGGAAGAAGCCATTGCCAAGGGTATCCGGAGGATTGTGGCT GTCACAGGTGCCGAGGCCCAGAAGGCCCTCAGGAAAGCAGAGAGCTTGAAGAAATGTCTCTCTGTCATGGAAGCCAAAGTGAAGGCTCAG ACTGCTCCAAACAAGGATGTGCAGAGGGAGATCGCTGACCTTGGAGAGGCCCTGGCCACTGCAGTCATCCCCCAGTGGCAGAAGGATGAA TTGCGGGAGACTCTCAAATCCCTAAAGAAGGTCATGGATGACTTGGACCGAGCCAGCAAAGCCGATGTCCAGAAACGAGTGTTAGAGAAG ACGAAGCAGTTCATCGACAGCAACCCCAACCAGCCTCTTGTCATCCTGGAGATGGAGAGCGGCGCCTCAGCCAAGGCCCTGAATGAAGCC TTGAAGCTCTTCAAGATGCACTCCCCTCAGACTTCTGCCATGCTCTTCACGGTGGACAATGAGGCTGGCAAGATCACGTGCCTGTGTCAA GTTCCCCAGAATGCAGCCAATCGGGGCTTAAAAGCCAGCGAGTGGGTGCAGCAGGTGTCAGGCTTGATGGACGGTAAAGGTGGTGGCAAG GATGTGTCTGCACAGGCCACAGGCAAGAACGTTGGCTGCCTGCAGGAGGCGCTGCAGCTGGCCACTTCCTTCGCCCAGCTGCGCCTCGGG GATGTAAAGAACTGAGTGGGGAAGGAGGAGGCTCCCACTGGATCCATCCGTCCAGCCAAGAGCTCTTCATCTGCTACAAGAACATTTGAA TCTTGGGACCTTTAAAGAGCCCCTCCTAACCCAGCAGTAACTGGAACACACTTGGGAGCAGTCCTATGTCTCAGTGCCCCTTAAATTTCT GCCCTGAGCCCTCCACGTCAGTGCCATCGGTCTAGAACCACTAACCCCGCATTGCTGTTGATCGTCACGCTCGCATCTATAGATAACGGC TCTCCAGACCTGAGCTTTCCGCGTCAGCAAGTAGGAATCGTTTTTGCTGCAGAGAATAAAAGGACCACGTGCAATACTTAATGCCGCATG >43339_43339_1_KNTC1-AARS_KNTC1_chr12_123060446_ENST00000333479_AARS_chr16_70293089_ENST00000261772_length(amino acids)=1244AA_BP=871 MTQEDSLRNMWNDIELLTNDDTGSGYLSVGSRKEHGTALYQVDLLVKISSEKASLNPKIQACSLSDGFIIVADQSVILLDSICRSLQLHL VFDTEVDVVGLCQEGKFLLVGERSGNLHLIHVTSKQTLLTNAFVQKANDENRRTYQNLVIEKDGSNEGTYYMLLLTYSGFFCITNLQLLK IQQAIENVDFSTAKKLQGQIKSSFISTENYHTLGCLSLVAGDLASEVPVIIGGTGNCAFSKWEPDSSKKGMTVKNLIDAEIIKGAKKFQL IDNLLFVLDTDNVLSLWDIYTLTPVWNWPSLHVEEFLLTTEADSPSSVTWQGITNLKLIALTASANKKMKNLMVYSLPTMEILYSLEVSS VSSLVQTGISTDTIYLLEGVCKNDPKLSEDSVSVLVLRCLTEALPENRLSRLLHKHRFAEAESFAIQFGLDVELVYKVKSNHILEKLALS SVDASEQTEWQQLVDDAKENLHKIQDDEFVVNYCLKAQWITYETTQEMLNYAKTRLLKKEDKTALIYSDGLKEVLRAHAKLTTFYGAFGP EKFSGSSWIEFLNNEDDLKDIFLQLKEGNLVCAQYLWLRHRANFESRFDVKMLESLLNSMSASVSLQKLCPWFKNDVIPFVRRTVPEGQI ILAKWLEQAARNLELTDKANWPENGLQLAEIFFTAEKTDELGLASSWHWISLKDYQNTEEVCQLRTLVNNLRELITLHRKYNCKLALSDF EKENTTTIVFRMFDKVLAPELIPSILEKFIRVYMREHDLQEEELLLLYIEDLLNRCSSKSTSLFETAWEAKAMAVIACLSDTDLIFDAVL KIMYAAVVPWSAAVEQLVKQHLEMDHPKVKLLQESYKLMEMKKLLRGYGIREVNLLNKEIMPRRRPIMSNHTATHILNFALRSVLGEADQ KGSLVAPDRLRFDFTAKGAMSTQQIKKAEEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSGPA GSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAESLKKCLSVMEAKVKAQTAPNKDVQREIADLGEALAT AVIPQWQKDELRETLKSLKKVMDDLDRASKADVQKRVLEKTKQFIDSNPNQPLVILEMESGASAKALNEALKLFKMHSPQTSAMLFTVDN -------------------------------------------------------------- |
Top |
Fusion Gene PPI Analysis for KNTC1-AARS |
![]() |
![]() |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
Related Drugs for KNTC1-AARS |
![]() (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
Related Diseases for KNTC1-AARS |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |