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Fusion Protein:ZNF227-AKAP9 |
Fusion Gene and Fusion Protein Summary |
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Fusion partner gene information | Fusion gene name: ZNF227-AKAP9 | FusionPDB ID: 101651 | FusionGDB2.0 ID: 101651 | Hgene | Tgene | Gene symbol | ZNF227 | AKAP9 | Gene ID | 7770 | 10142 |
Gene name | zinc finger protein 227 | A-kinase anchoring protein 9 | |
Synonyms | - | AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO | |
Cytomap | 19q13.31 | 7q21.2 | |
Type of gene | protein-coding | protein-coding | |
Description | zinc finger protein 227 | A-kinase anchor protein 9A kinase (PRKA) anchor protein (yotiao) 9A kinase (PRKA) anchor protein 9A-kinase anchor protein 350 kDaA-kinase anchor protein 450 kDaAKAP 120-like proteinAKAP9-BRAF fusion proteincentrosome- and Golgi-localized PKN-associ | |
Modification date | 20200313 | 20200328 | |
UniProtAcc | . | Q99996 Main function of 5'-partner protein: FUNCTION: Scaffolding protein that assembles several protein kinases and phosphatases on the centrosome and Golgi apparatus. Required to maintain the integrity of the Golgi apparatus (PubMed:10202149, PubMed:15047863). Required for microtubule nucleation at the cis-side of the Golgi apparatus (PubMed:15047863, PubMed:19242490). Required for association of the centrosomes with the poles of the bipolar mitotic spindle during metaphase (PubMed:25657325). In complex with PDE4DIP isoform 13/MMG8/SMYLE, recruits CAMSAP2 to the Golgi apparatus and tethers non-centrosomal minus-end microtubules to the Golgi, an important step for polarized cell movement (PubMed:27666745, PubMed:28814570). In complex with PDE4DIP isoform 13/MMG8/SMYLE, EB1/MAPRE1 and CDK5RAP2, contributes to microtubules nucleation and extension also from the centrosome to the cell periphery (PubMed:29162697). {ECO:0000269|PubMed:10202149, ECO:0000269|PubMed:15047863, ECO:0000269|PubMed:19242490, ECO:0000269|PubMed:25657325, ECO:0000269|PubMed:27666745, ECO:0000269|PubMed:28814570, ECO:0000269|PubMed:29162697}.; FUNCTION: [Isoform 4]: Associated with the N-methyl-D-aspartate receptor and is specifically found in the neuromuscular junction (NMJ) as well as in neuronal synapses, suggesting a role in the organization of postsynaptic specializations. {ECO:0000269|PubMed:9482789}. | |
Ensembl transtripts involved in fusion gene | ENST ids | ENST00000313040, ENST00000586228, ENST00000391961, ENST00000589005, ENST00000589237, ENST00000589707, | ENST00000394564, ENST00000491695, ENST00000356239, ENST00000358100, ENST00000359028, |
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 4 X 6 X 4=96 | 11 X 17 X 7=1309 |
# samples | 7 | 15 | |
** MAII score | log2(7/96*10)=-0.45567948377619 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(15/1309*10)=-3.12543069144936 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Fusion gene context | PubMed: ZNF227 [Title/Abstract] AND AKAP9 [Title/Abstract] AND fusion [Title/Abstract] | ||
Fusion neoantigen context | PubMed: ZNF227 [Title/Abstract] AND AKAP9 [Title/Abstract] AND neoantigen [Title/Abstract] | ||
Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | ZNF227(44722005)-AKAP9(91671981), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. | ZNF227-AKAP9 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. ZNF227-AKAP9 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. ZNF227-AKAP9 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. ZNF227-AKAP9 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | AKAP9 | GO:0098962 | regulation of postsynaptic neurotransmitter receptor activity | 10390370 |
Tgene | AKAP9 | GO:1903358 | regulation of Golgi organization | 27666745 |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr19:44722005/chr7:91671981) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Fusion Amino Acid Sequences |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000586228 | ZNF227 | chr19 | 44722005 | + | ENST00000356239 | AKAP9 | chr7 | 91671981 | + | 7445 | 265 | 118 | 6930 | 2270 |
ENST00000586228 | ZNF227 | chr19 | 44722005 | + | ENST00000358100 | AKAP9 | chr7 | 91671981 | + | 7259 | 265 | 118 | 6744 | 2208 |
ENST00000586228 | ZNF227 | chr19 | 44722005 | + | ENST00000359028 | AKAP9 | chr7 | 91671981 | + | 7421 | 265 | 118 | 6906 | 2262 |
ENST00000313040 | ZNF227 | chr19 | 44722005 | + | ENST00000356239 | AKAP9 | chr7 | 91671981 | + | 7445 | 265 | 118 | 6930 | 2270 |
ENST00000313040 | ZNF227 | chr19 | 44722005 | + | ENST00000358100 | AKAP9 | chr7 | 91671981 | + | 7259 | 265 | 118 | 6744 | 2208 |
ENST00000313040 | ZNF227 | chr19 | 44722005 | + | ENST00000359028 | AKAP9 | chr7 | 91671981 | + | 7421 | 265 | 118 | 6906 | 2262 |
ENST00000586228 | ZNF227 | chr19 | 44722005 | + | ENST00000356239 | AKAP9 | chr7 | 91671360 | + | 7586 | 265 | 118 | 7071 | 2317 |
ENST00000586228 | ZNF227 | chr19 | 44722005 | + | ENST00000358100 | AKAP9 | chr7 | 91671360 | + | 7400 | 265 | 118 | 6885 | 2255 |
ENST00000586228 | ZNF227 | chr19 | 44722005 | + | ENST00000359028 | AKAP9 | chr7 | 91671360 | + | 7562 | 265 | 118 | 7047 | 2309 |
ENST00000313040 | ZNF227 | chr19 | 44722005 | + | ENST00000356239 | AKAP9 | chr7 | 91671360 | + | 7586 | 265 | 118 | 7071 | 2317 |
ENST00000313040 | ZNF227 | chr19 | 44722005 | + | ENST00000358100 | AKAP9 | chr7 | 91671360 | + | 7400 | 265 | 118 | 6885 | 2255 |
ENST00000313040 | ZNF227 | chr19 | 44722005 | + | ENST00000359028 | AKAP9 | chr7 | 91671360 | + | 7562 | 265 | 118 | 7047 | 2309 |
ENST00000586228 | ZNF227 | chr19 | 44722005 | + | ENST00000356239 | AKAP9 | chr7 | 91671982 | + | 7445 | 265 | 118 | 6930 | 2270 |
ENST00000586228 | ZNF227 | chr19 | 44722005 | + | ENST00000358100 | AKAP9 | chr7 | 91671982 | + | 7259 | 265 | 118 | 6744 | 2208 |
ENST00000586228 | ZNF227 | chr19 | 44722005 | + | ENST00000359028 | AKAP9 | chr7 | 91671982 | + | 7421 | 265 | 118 | 6906 | 2262 |
ENST00000313040 | ZNF227 | chr19 | 44722005 | + | ENST00000356239 | AKAP9 | chr7 | 91671982 | + | 7445 | 265 | 118 | 6930 | 2270 |
ENST00000313040 | ZNF227 | chr19 | 44722005 | + | ENST00000358100 | AKAP9 | chr7 | 91671982 | + | 7259 | 265 | 118 | 6744 | 2208 |
ENST00000313040 | ZNF227 | chr19 | 44722005 | + | ENST00000359028 | AKAP9 | chr7 | 91671982 | + | 7421 | 265 | 118 | 6906 | 2262 |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000586228 | ENST00000356239 | ZNF227 | chr19 | 44722005 | + | AKAP9 | chr7 | 91671981 | + | 0.002639875 | 0.99736017 |
ENST00000586228 | ENST00000358100 | ZNF227 | chr19 | 44722005 | + | AKAP9 | chr7 | 91671981 | + | 0.002644765 | 0.9973552 |
ENST00000586228 | ENST00000359028 | ZNF227 | chr19 | 44722005 | + | AKAP9 | chr7 | 91671981 | + | 0.002349238 | 0.9976508 |
ENST00000313040 | ENST00000356239 | ZNF227 | chr19 | 44722005 | + | AKAP9 | chr7 | 91671981 | + | 0.002639875 | 0.99736017 |
ENST00000313040 | ENST00000358100 | ZNF227 | chr19 | 44722005 | + | AKAP9 | chr7 | 91671981 | + | 0.002644765 | 0.9973552 |
ENST00000313040 | ENST00000359028 | ZNF227 | chr19 | 44722005 | + | AKAP9 | chr7 | 91671981 | + | 0.002349238 | 0.9976508 |
ENST00000586228 | ENST00000356239 | ZNF227 | chr19 | 44722005 | + | AKAP9 | chr7 | 91671360 | + | 0.002561775 | 0.9974382 |
ENST00000586228 | ENST00000358100 | ZNF227 | chr19 | 44722005 | + | AKAP9 | chr7 | 91671360 | + | 0.002557734 | 0.99744225 |
ENST00000586228 | ENST00000359028 | ZNF227 | chr19 | 44722005 | + | AKAP9 | chr7 | 91671360 | + | 0.002265673 | 0.9977343 |
ENST00000313040 | ENST00000356239 | ZNF227 | chr19 | 44722005 | + | AKAP9 | chr7 | 91671360 | + | 0.002561775 | 0.9974382 |
ENST00000313040 | ENST00000358100 | ZNF227 | chr19 | 44722005 | + | AKAP9 | chr7 | 91671360 | + | 0.002557734 | 0.99744225 |
ENST00000313040 | ENST00000359028 | ZNF227 | chr19 | 44722005 | + | AKAP9 | chr7 | 91671360 | + | 0.002265673 | 0.9977343 |
ENST00000586228 | ENST00000356239 | ZNF227 | chr19 | 44722005 | + | AKAP9 | chr7 | 91671982 | + | 0.002639875 | 0.99736017 |
ENST00000586228 | ENST00000358100 | ZNF227 | chr19 | 44722005 | + | AKAP9 | chr7 | 91671982 | + | 0.002644765 | 0.9973552 |
ENST00000586228 | ENST00000359028 | ZNF227 | chr19 | 44722005 | + | AKAP9 | chr7 | 91671982 | + | 0.002349238 | 0.9976508 |
ENST00000313040 | ENST00000356239 | ZNF227 | chr19 | 44722005 | + | AKAP9 | chr7 | 91671982 | + | 0.002639875 | 0.99736017 |
ENST00000313040 | ENST00000358100 | ZNF227 | chr19 | 44722005 | + | AKAP9 | chr7 | 91671982 | + | 0.002644765 | 0.9973552 |
ENST00000313040 | ENST00000359028 | ZNF227 | chr19 | 44722005 | + | AKAP9 | chr7 | 91671982 | + | 0.002349238 | 0.9976508 |
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Get the fusion protein sequences from here. |
Fusion protein sequence information is available in the fasta format. >FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP |
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Fusion Protein Breakpoint Sequences for ZNF227-AKAP9 |
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Hgene | Hchr | Hbp | Tgene | Tchr | Tbp | Length(fusion protein) | BP in fusion protein | Peptide |
ZNF227 | chr19 | 44722005 | AKAP9 | chr7 | 91671360 | 265 | 49 | LPQKKQEKMTKFQRSSIDNENLVSER |
ZNF227 | chr19 | 44722005 | AKAP9 | chr7 | 91671981 | 265 | 48 | DLPQKKQEKMTKFQNGNENQGEVEEQ |
ZNF227 | chr19 | 44722005 | AKAP9 | chr7 | 91671982 | 265 | 48 | DLPQKKQEKMTKFQNGNENQGEVEEQ |
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Potential FusionNeoAntigen Information of ZNF227-AKAP9 in HLA I |
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ZNF227-AKAP9_44722005_91671360.msa |
![]() * We used NetMHCpan v4.1 (%rank<0.5) and deepHLApan v1.1 (immunogenic score>0.5) |
Fusion gene | Hchr | Hbp | Tgene | Tchr | Tbp | HLA I | FusionNeoAntigen peptide | Binding score | Immunogenic score | Neoantigen start (at BP 13) | Neoantigen end (at BP 13) |
ZNF227-AKAP9 | chr19 | 44722005 | chr7 | 91671360 | 265 | HLA-A30:08 | MTKFQRSSI | 0.9806 | 0.5254 | 8 | 17 |
ZNF227-AKAP9 | chr19 | 44722005 | chr7 | 91671360 | 265 | HLA-B38:02 | QRSSIDNENL | 0.9849 | 0.9352 | 12 | 22 |
ZNF227-AKAP9 | chr19 | 44722005 | chr7 | 91671360 | 265 | HLA-B27:09 | QRSSIDNENL | 0.9988 | 0.8404 | 12 | 22 |
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Potential FusionNeoAntigen Information of ZNF227-AKAP9 in HLA II |
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ZNF227-AKAP9_44722005_91671360.msa |
![]() * We used NetMHCIIpan v4.1 (%rank<0.5). |
Fusion gene | Hchr | Hbp | Tgene | Tchr | Tbp | HLA II | FusionNeoAntigen peptide | Neoantigen start (at BP 13) | Neoantigen end (at BP 13) |
ZNF227-AKAP9 | chr19 | 44722005 | chr7 | 91671360 | 265 | DRB1-1343 | QEKMTKFQRSSIDNE | 5 | 20 |
ZNF227-AKAP9 | chr19 | 44722005 | chr7 | 91671360 | 265 | DRB1-1354 | QEKMTKFQRSSIDNE | 5 | 20 |
ZNF227-AKAP9 | chr19 | 44722005 | chr7 | 91671360 | 265 | DRB1-1416 | QEKMTKFQRSSIDNE | 5 | 20 |
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Fusion breakpoint peptide structures of ZNF227-AKAP9 |
![]() * The minimum length of the amino acid sequence in RoseTTAFold is 14AA. Here, we predicted the 14AA fusion protein breakpoint sequence not the fusion neoantigen peptide, which is shorter than 14 AA. |
File name | BPseq | Hgene | Tgene | Hchr | Hbp | Tchr | Tbp | AAlen |
1850 | EKMTKFQRSSIDNE | ZNF227 | AKAP9 | chr19 | 44722005 | chr7 | 91671360 | 265 |
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Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D of ZNF227-AKAP9 |
![]() * We used Glide to predict the interaction between HLAs and neoantigens. |
HLA allele | PDB ID | File name | BPseq | Docking score | Glide score |
HLA-B14:02 | 3BVN | 1850 | EKMTKFQRSSIDNE | -7.9962 | -8.1096 |
HLA-B14:02 | 3BVN | 1850 | EKMTKFQRSSIDNE | -5.70842 | -6.74372 |
HLA-B52:01 | 3W39 | 1850 | EKMTKFQRSSIDNE | -6.83737 | -6.95077 |
HLA-B52:01 | 3W39 | 1850 | EKMTKFQRSSIDNE | -4.4836 | -5.5189 |
HLA-A11:01 | 4UQ2 | 1850 | EKMTKFQRSSIDNE | -10.0067 | -10.1201 |
HLA-A11:01 | 4UQ2 | 1850 | EKMTKFQRSSIDNE | -9.03915 | -10.0745 |
HLA-A24:02 | 5HGA | 1850 | EKMTKFQRSSIDNE | -6.56204 | -6.67544 |
HLA-A24:02 | 5HGA | 1850 | EKMTKFQRSSIDNE | -5.42271 | -6.45801 |
HLA-B44:05 | 3DX8 | 1850 | EKMTKFQRSSIDNE | -7.85648 | -8.89178 |
HLA-B44:05 | 3DX8 | 1850 | EKMTKFQRSSIDNE | -5.3978 | -5.5112 |
HLA-A02:01 | 6TDR | 1850 | EKMTKFQRSSIDNE | -3.37154 | -4.40684 |
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Vaccine Design for the FusionNeoAntigens of ZNF227-AKAP9 |
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Fusion gene | Hchr | Hbp | Tchr | Tbp | Start in +/-13AA | End in +/-13AA | FusionNeoAntigen peptide sequence | FusionNeoAntigen RNA sequence |
ZNF227-AKAP9 | chr19 | 44722005 | chr7 | 91671360 | 12 | 22 | QRSSIDNENL | CAGAGATCCTCCATAGATAATGAAAACCTG |
ZNF227-AKAP9 | chr19 | 44722005 | chr7 | 91671360 | 8 | 17 | MTKFQRSSI | ATGACCAAGTTTCAGAGATCCTCCATA |
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Fusion gene | Hchr | Hbp | Tchr | Tbp | Start in +/-13AA | End in +/-13AA | FusionNeoAntigen peptide | FusionNEoAntigen RNA sequence |
ZNF227-AKAP9 | chr19 | 44722005 | chr7 | 91671360 | 5 | 20 | QEKMTKFQRSSIDNE | CAGGAGAAAATGACCAAGTTTCAGAGATCCTCCATAGATAATGAA |
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Information of the samples that have these potential fusion neoantigens of ZNF227-AKAP9 |
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Cancer type | Fusion gene | Hchr | Hbp | Henst | Tchr | Tbp | Tenst | Sample |
STAD | ZNF227-AKAP9 | chr19 | 44722005 | ENST00000313040 | chr7 | 91671360 | ENST00000356239 | TCGA-BR-A4PD-01A |
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Potential target of CAR-T therapy development for ZNF227-AKAP9 |
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![]() * Minus value of BPloci means that the break point is located before the CDS. |
- In-frame and retained 'Transmembrane'. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
![]() * We used DeepLoc 1.0. The order of the X-axis of the barplot is as follows: Entry_ID, Localization, Type, Nucleus, Cytoplasm, Extracellular, Mitochondrion, Cell_membrane, Endoplasmic_reticulum, Plastid, Golgi.apparatus, Lysosome.Vacuole, Peroxisome. Y-axis is the output score of DeepLoc. Clicking the image will open a new tab with a large image. |
Hgene | Hchr | Hbp | Henst | Tgene | Tchr | Tbp | Tenst | DeepLoc result |
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Related Drugs to ZNF227-AKAP9 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Drug | Source | PMID |
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Related Diseases to ZNF227-AKAP9 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Disease | Source | PMID |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | AKAP9 | C2678483 | Long Qt Syndrome 11 | 4 | CLINGEN;CTD_human;GENOMICS_ENGLAND;UNIPROT |
Tgene | AKAP9 | C0035828 | Romano-Ward Syndrome | 1 | ORPHANET |
Tgene | AKAP9 | C0037274 | Dermatologic disorders | 1 | CTD_human |
Tgene | AKAP9 | C0274861 | Arsenic Poisoning, Inorganic | 1 | CTD_human |
Tgene | AKAP9 | C0274862 | Nervous System, Organic Arsenic Poisoning | 1 | CTD_human |
Tgene | AKAP9 | C0311375 | Arsenic Poisoning | 1 | CTD_human |
Tgene | AKAP9 | C0751851 | Arsenic Encephalopathy | 1 | CTD_human |
Tgene | AKAP9 | C0751852 | Arsenic Induced Polyneuropathy | 1 | CTD_human |
Tgene | AKAP9 | C1142166 | Brugada Syndrome (disorder) | 1 | ORPHANET |