FusionNeoAntigen Logo

Home

Download

Statistics

Examples

Help

Contact

Terms of Use

Center for Computational Systems Medicine
leaf

Fusion Gene and Fusion Protein Summary

leaf

Fusion Amino Acid Sequences (multiple BPs and multiple gene isoforms)

leaf

Fusion Protein Breakpoint Sequences - (for the Screening of the FusionNeoAntigens)

leaf

Potential FusionNeoAntigens in HLA I - (netMHCpan v4.1 + deepHLApan v1.1)

leaf

Potential FusionNeoAntigens in HLA II - (netMHCIIpan v4.1)

leaf

Fusion Breakpoint 14 AA Peptide Structure - (RoseTTAFold)

leaf

Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D - (Glide)

leaf

Vaccine Design for the FusionNeoAntigens (RNA/protein sequences)

leaf

Potential target of CAR-T therapy development

leaf

Information on the samples that have these potential fusion neoantigens

leaf

Fusion Protein Targeting Drugs - (Manual Curation)

leaf

Fusion Protein Related diseases - (Manual Curation)

Fusion Protein:ZNF562-HK2

Fusion Gene and Fusion Protein Summary

check button Fusion gene summary
Fusion partner gene informationFusion gene name: ZNF562-HK2
FusionPDB ID: 102376
FusionGDB2.0 ID: 102376
HgeneTgene
Gene symbol

ZNF562

HK2

Gene ID

54811

29911

Gene namezinc finger protein 562hook microtubule tethering protein 2
Synonyms-HK2
Cytomap

19p13.2

19p13.13

Type of geneprotein-codingprotein-coding
Descriptionzinc finger protein 562protein Hook homolog 2h-hook2hHK2hook homolog 2
Modification date2020031320200327
UniProtAcc.

P52789

Main function of 5'-partner protein: FUNCTION: Catalyzes the phosphorylation of hexose, such as D-glucose and D-fructose, to hexose 6-phosphate (D-glucose 6-phosphate and D-fructose 6-phosphate, respectively) (PubMed:23185017, PubMed:26985301, PubMed:29298880). Mediates the initial step of glycolysis by catalyzing phosphorylation of D-glucose to D-glucose 6-phosphate (PubMed:29298880). Plays a key role in maintaining the integrity of the outer mitochondrial membrane by preventing the release of apoptogenic molecules from the intermembrane space and subsequent apoptosis (PubMed:18350175). {ECO:0000269|PubMed:18350175, ECO:0000269|PubMed:23185017, ECO:0000269|PubMed:26985301, ECO:0000269|PubMed:29298880}.
Ensembl transtripts involved in fusion geneENST idsENST00000448622, ENST00000453372, 
ENST00000453792, ENST00000541032, 
ENST00000587392, ENST00000590155, 
ENST00000293648, ENST00000537617, 
ENST00000290573, ENST00000409174, 
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)* DoF score7 X 6 X 5=2103 X 3 X 3=27
# samples 63
** MAII scorelog2(6/210*10)=-1.8073549220576
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(3/27*10)=0.15200309344505
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
Fusion gene context

PubMed: ZNF562 [Title/Abstract] AND HK2 [Title/Abstract] AND fusion [Title/Abstract]

Fusion neoantigen context

PubMed: ZNF562 [Title/Abstract] AND HK2 [Title/Abstract] AND neoantigen [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)ZNF562(9768685)-HK2(75099427), # samples:1
Anticipated loss of major functional domain due to fusion event.ZNF562-HK2 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
ZNF562-HK2 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
ZNF562-HK2 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
ZNF562-HK2 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
ZNF562-HK2 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
ZNF562-HK2 seems lost the major protein functional domain in Hgene partner, which is a transcription factor due to the frame-shifted ORF.
ZNF562-HK2 seems lost the major protein functional domain in Tgene partner, which is a cell metabolism gene due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr19:9768685/chr2:75099427)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonRetention analysis results of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features, are available here.

check buttonFusion gene breakpoints across ZNF562 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across HK2 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


Top

Fusion Amino Acid Sequences


check buttonFusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000453372ZNF562chr199768685-ENST00000290573HK2chr275099427+51984013952779794
ENST00000453372ZNF562chr199768685-ENST00000409174HK2chr275099427+51984013952779794
ENST00000541032ZNF562chr199768685-ENST00000290573HK2chr275099427+51513543482732794
ENST00000541032ZNF562chr199768685-ENST00000409174HK2chr275099427+51513543482732794
ENST00000590155ZNF562chr199768685-ENST00000290573HK2chr275099427+52364394332817794
ENST00000590155ZNF562chr199768685-ENST00000409174HK2chr275099427+52364394332817794
ENST00000453792ZNF562chr199768685-ENST00000290573HK2chr275099427+50102132072591794
ENST00000453792ZNF562chr199768685-ENST00000409174HK2chr275099427+50102132072591794
ENST00000587392ZNF562chr199768685-ENST00000290573HK2chr275099427+52064094032787794
ENST00000587392ZNF562chr199768685-ENST00000409174HK2chr275099427+52064094032787794

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000453372ENST00000290573ZNF562chr199768685-HK2chr275099427+0.0004453890.9995546
ENST00000453372ENST00000409174ZNF562chr199768685-HK2chr275099427+0.0004453890.9995546
ENST00000541032ENST00000290573ZNF562chr199768685-HK2chr275099427+0.0004529870.99954695
ENST00000541032ENST00000409174ZNF562chr199768685-HK2chr275099427+0.0004529870.99954695
ENST00000590155ENST00000290573ZNF562chr199768685-HK2chr275099427+0.0004476960.9995523
ENST00000590155ENST00000409174ZNF562chr199768685-HK2chr275099427+0.0004476960.9995523
ENST00000453792ENST00000290573ZNF562chr199768685-HK2chr275099427+0.0004218680.9995782
ENST00000453792ENST00000409174ZNF562chr199768685-HK2chr275099427+0.0004218680.9995782
ENST00000587392ENST00000290573ZNF562chr199768685-HK2chr275099427+0.0004343730.99956566
ENST00000587392ENST00000409174ZNF562chr199768685-HK2chr275099427+0.0004343730.99956566

check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.

Get the fusion protein sequences from here.

Fusion protein sequence information is available in the fasta format.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

Top

Fusion Protein Breakpoint Sequences for ZNF562-HK2

check button +/-13 AA sequence from the breakpoints of the fusion protein sequences.
HgeneHchrHbpTgeneTchrTbpLength(fusion protein)BP in fusion proteinPeptide
ZNF562chr199768685HK2chr275099427213400MLPTYVCATPDGTEKGDFLALDLGGT
ZNF562chr199768685HK2chr275099427354400MLPTYVCATPDGTEKGDFLALDLGGT
ZNF562chr199768685HK2chr275099427401400MLPTYVCATPDGTEKGDFLALDLGGT
ZNF562chr199768685HK2chr275099427409400MLPTYVCATPDGTEKGDFLALDLGGT
ZNF562chr199768685HK2chr275099427439400MLPTYVCATPDGTEKGDFLALDLGGT

Top

Potential FusionNeoAntigen Information of ZNF562-HK2 in HLA I

check button Multiple sequence alignments of the potential FusionNeoAntigens per fusion breakpoints. If the MSA is empty, then it means that there were predicted fusion neoantigens in this fusion breakpoint, but those predicted fusion neoantigens were not across the breakpoint, which is not fusion-specific.
ZNF562-HK2_9768685_75099427.msa

check button Potential FusionNeoAntigen Information
* We used NetMHCpan v4.1 (%rank<0.5) and deepHLApan v1.1 (immunogenic score>0.5)
Fusion geneHchrHbpTgeneTchrTbpHLA IFusionNeoAntigen peptideBinding scoreImmunogenic scoreNeoantigen start (at BP 13)Neoantigen end (at BP 13)
ZNF562-HK2chr199768685chr275099427401HLA-B50:02TEKGDFLAL0.98670.73851221
ZNF562-HK2chr199768685chr275099427401HLA-B47:01TEKGDFLAL0.97290.71171221
ZNF562-HK2chr199768685chr275099427401HLA-B44:03TEKGDFLAL0.95690.97391221
ZNF562-HK2chr199768685chr275099427401HLA-B18:01TEKGDFLAL0.88830.89311221
ZNF562-HK2chr199768685chr275099427401HLA-B45:01TEKGDFLAL0.88290.94381221
ZNF562-HK2chr199768685chr275099427401HLA-B39:13TEKGDFLAL0.5520.96781221
ZNF562-HK2chr199768685chr275099427401HLA-B41:01TEKGDFLAL0.53320.93311221
ZNF562-HK2chr199768685chr275099427401HLA-B50:01TEKGDFLAL0.37420.79021221
ZNF562-HK2chr199768685chr275099427401HLA-B15:37TEKGDFLAL0.33780.65421221
ZNF562-HK2chr199768685chr275099427401HLA-B35:08TPDGTEKGDF0.91480.7485818
ZNF562-HK2chr199768685chr275099427401HLA-B40:01GTEKGDFLAL0.58780.61931121
ZNF562-HK2chr199768685chr275099427401HLA-B35:03TPDGTEKGDFL0.98450.7774819
ZNF562-HK2chr199768685chr275099427401HLA-B35:04TPDGTEKGDFL0.96650.9646819
ZNF562-HK2chr199768685chr275099427401HLA-B35:02TPDGTEKGDFL0.96650.9646819
ZNF562-HK2chr199768685chr275099427401HLA-B40:06TEKGDFLAL0.99940.65291221
ZNF562-HK2chr199768685chr275099427401HLA-B44:10TEKGDFLAL0.99390.57051221
ZNF562-HK2chr199768685chr275099427401HLA-B39:08TEKGDFLAL0.71550.93111221
ZNF562-HK2chr199768685chr275099427401HLA-B39:09TEKGDFLAL0.62820.87731221
ZNF562-HK2chr199768685chr275099427401HLA-B39:05TEKGDFLAL0.52910.96881221
ZNF562-HK2chr199768685chr275099427401HLA-B39:12TEKGDFLAL0.51930.97481221
ZNF562-HK2chr199768685chr275099427401HLA-B40:03GTEKGDFLAL0.8170.54221121
ZNF562-HK2chr199768685chr275099427401HLA-B35:12TPDGTEKGDFL0.96650.9646819
ZNF562-HK2chr199768685chr275099427401HLA-B39:10TPDGTEKGDFL0.93670.9183819
ZNF562-HK2chr199768685chr275099427401HLA-B40:04TEKGDFLAL0.99940.7621221
ZNF562-HK2chr199768685chr275099427401HLA-B44:26TEKGDFLAL0.95690.97391221
ZNF562-HK2chr199768685chr275099427401HLA-B44:13TEKGDFLAL0.95690.97391221
ZNF562-HK2chr199768685chr275099427401HLA-B44:07TEKGDFLAL0.95690.97391221
ZNF562-HK2chr199768685chr275099427401HLA-B18:07TEKGDFLAL0.91170.80081221
ZNF562-HK2chr199768685chr275099427401HLA-B18:04TEKGDFLAL0.90410.89151221
ZNF562-HK2chr199768685chr275099427401HLA-B18:05TEKGDFLAL0.88830.89311221
ZNF562-HK2chr199768685chr275099427401HLA-B18:06TEKGDFLAL0.88370.91481221
ZNF562-HK2chr199768685chr275099427401HLA-B18:08TEKGDFLAL0.87440.92031221
ZNF562-HK2chr199768685chr275099427401HLA-B18:03TEKGDFLAL0.87290.88481221
ZNF562-HK2chr199768685chr275099427401HLA-B41:03TEKGDFLAL0.84350.65511221
ZNF562-HK2chr199768685chr275099427401HLA-B18:11TEKGDFLAL0.73250.89161221
ZNF562-HK2chr199768685chr275099427401HLA-B39:11TEKGDFLAL0.68780.91051221
ZNF562-HK2chr199768685chr275099427401HLA-B39:31TEKGDFLAL0.6090.97311221
ZNF562-HK2chr199768685chr275099427401HLA-B39:02TEKGDFLAL0.58560.97091221
ZNF562-HK2chr199768685chr275099427401HLA-B50:05TEKGDFLAL0.37420.79021221
ZNF562-HK2chr199768685chr275099427401HLA-B50:04TEKGDFLAL0.37420.79021221
ZNF562-HK2chr199768685chr275099427401HLA-B48:02TEKGDFLAL0.32750.90861221
ZNF562-HK2chr199768685chr275099427401HLA-B15:54TEKGDFLAL0.27680.83531221
ZNF562-HK2chr199768685chr275099427401HLA-B15:53TEKGDFLAL0.16140.84261221
ZNF562-HK2chr199768685chr275099427401HLA-B40:04GTEKGDFLAL0.6650.78791121
ZNF562-HK2chr199768685chr275099427401HLA-B40:49GTEKGDFLAL0.62060.6421121
ZNF562-HK2chr199768685chr275099427401HLA-B40:36GTEKGDFLAL0.5760.60331121
ZNF562-HK2chr199768685chr275099427401HLA-B41:03GTEKGDFLAL0.47840.73191121
ZNF562-HK2chr199768685chr275099427401HLA-B35:09TPDGTEKGDFL0.96650.9646819
ZNF562-HK2chr199768685chr275099427401HLA-B18:03DGTEKGDFLAL0.94470.83241021

Top

Potential FusionNeoAntigen Information of ZNF562-HK2 in HLA II

check button Multiple sequence alignments of the potential FusionNeoAntigens per fusion breakpoints. If the MSA is empty, then it means that there were predicted fusion neoantigens in this fusion breakpoint, but those predicted fusion neoantigens were not across the breakpoint, which is not fusion-specific.

check button Potential FusionNeoAntigen Information
* We used NetMHCIIpan v4.1 (%rank<0.5).
Fusion geneHchrHbpTgeneTchrTbpHLA IIFusionNeoAntigen peptideNeoantigen start (at BP 13)Neoantigen end (at BP 13)

Top

Fusion breakpoint peptide structures of ZNF562-HK2

check button3D structures of the fusion breakpoint peptide of 14AA sequence that have potential fusion neoantigens
* The minimum length of the amino acid sequence in RoseTTAFold is 14AA. Here, we predicted the 14AA fusion protein breakpoint sequence not the fusion neoantigen peptide, which is shorter than 14 AA.
File nameBPseqHgeneTgeneHchrHbpTchrTbpAAlen
769CATPDGTEKGDFLAZNF562HK2chr199768685chr275099427401

Top

Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D of ZNF562-HK2

check buttonVirtual screening between 25 HLAs (from PDB) and FusionNeoAntigens
* We used Glide to predict the interaction between HLAs and neoantigens.
HLA allelePDB IDFile nameBPseqDocking scoreGlide score
HLA-B14:023BVN769CATPDGTEKGDFLA-7.9962-8.1096
HLA-B14:023BVN769CATPDGTEKGDFLA-5.70842-6.74372
HLA-B52:013W39769CATPDGTEKGDFLA-6.83737-6.95077
HLA-B52:013W39769CATPDGTEKGDFLA-4.4836-5.5189
HLA-A11:014UQ2769CATPDGTEKGDFLA-10.0067-10.1201
HLA-A11:014UQ2769CATPDGTEKGDFLA-9.03915-10.0745
HLA-A24:025HGA769CATPDGTEKGDFLA-6.56204-6.67544
HLA-A24:025HGA769CATPDGTEKGDFLA-5.42271-6.45801
HLA-B44:053DX8769CATPDGTEKGDFLA-7.85648-8.89178
HLA-B44:053DX8769CATPDGTEKGDFLA-5.3978-5.5112
HLA-A02:016TDR769CATPDGTEKGDFLA-3.37154-4.40684

Top

Vaccine Design for the FusionNeoAntigens of ZNF562-HK2

check button mRNA and peptide sequences of FusionNeoAntigens that have potential interaction with HLA-Is.
Fusion geneHchrHbpTchrTbpStart in +/-13AAEnd in +/-13AAFusionNeoAntigen peptide sequenceFusionNeoAntigen RNA sequence
ZNF562-HK2chr199768685chr2750994271021DGTEKGDFLALCCTCTGTGGCTGTTTGACCACATTGCCGAATGC
ZNF562-HK2chr199768685chr2750994271121GTEKGDFLALCTGTGGCTGTTTGACCACATTGCCGAATGC
ZNF562-HK2chr199768685chr2750994271221TEKGDFLALTGGCTGTTTGACCACATTGCCGAATGC
ZNF562-HK2chr199768685chr275099427818TPDGTEKGDFACCTGGCCTCTGTGGCTGTTTGACCACATT
ZNF562-HK2chr199768685chr275099427819TPDGTEKGDFLACCTGGCCTCTGTGGCTGTTTGACCACATTGCC

check button mRNA and peptide sequences of FusionNeoAntigens that have potential interaction with HLA-IIs.
Fusion geneHchrHbpTchrTbpStart in +/-13AAEnd in +/-13AAFusionNeoAntigen peptideFusionNEoAntigen RNA sequence

Top

Information of the samples that have these potential fusion neoantigens of ZNF562-HK2

check button These samples were reported as having these fusion breakpoints. For individual breakpoints, we checked the open reading frames considering multiple gene isoforms and chose the in-frame fusion genes only. Then, we made fusion protein sequences and predicted the fusion neoantigens. These fusion-positive samples may have these potential fusion neoantigens.
Cancer typeFusion geneHchrHbpHenstTchrTbpTenstSample
ESCAZNF562-HK2chr199768685ENST00000453372chr275099427ENST00000290573TCGA-L5-A891

Top

Potential target of CAR-T therapy development for ZNF562-HK2

check button Predicted 3D structure. We used RoseTTAFold.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, to provide the retention of the transmembrane domain, we only show the protein feature retention information of those transmembrane features


* Minus value of BPloci means that the break point is located before the CDS.
- In-frame and retained 'Transmembrane'.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

check button Subcellular localization prediction of the transmembrane domain retained fusion proteins
* We used DeepLoc 1.0. The order of the X-axis of the barplot is as follows: Entry_ID, Localization, Type, Nucleus, Cytoplasm, Extracellular, Mitochondrion, Cell_membrane, Endoplasmic_reticulum, Plastid, Golgi.apparatus, Lysosome.Vacuole, Peroxisome. Y-axis is the output score of DeepLoc. Clicking the image will open a new tab with a large image.
HgeneHchrHbpHenstTgeneTchrTbpTenstDeepLoc result

Top

Related Drugs to ZNF562-HK2

check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

Top

Related Diseases to ZNF562-HK2

check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource