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Fusion Protein:C19orf10-MAP2K3 |
Fusion Gene and Fusion Protein Summary |
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Fusion partner gene information | Fusion gene name: C19orf10-MAP2K3 | FusionPDB ID: 11155 | FusionGDB2.0 ID: 56252 | Hgene | Tgene | Gene symbol | C19orf10 | MAP2K3 | Gene ID | 56005 | 5606 |
Gene name | myeloid derived growth factor | mitogen-activated protein kinase kinase 3 | |
Synonyms | C19orf10|EUROIMAGE1875335|IL25|IL27|IL27w|R33729_1|SF20 | MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2 | |
Cytomap | 19p13.3 | 17p11.2 | |
Type of gene | protein-coding | protein-coding | |
Description | myeloid-derived growth factorUPF0556 protein C19orf10interleukin 27 working designationinterleukin-25stromal cell-derived growth factor SF20 | dual specificity mitogen-activated protein kinase kinase 3MAP kinase kinase 3MAPK/ERK kinase 3MAPKK 3MEK 3SAPK kinase 2stress-activated protein kinase kinase 2 | |
Modification date | 20200313 | 20200327 | |
UniProtAcc | . | P46734 Main function of 5'-partner protein: FUNCTION: Dual specificity kinase. Is activated by cytokines and environmental stress in vivo. Catalyzes the concomitant phosphorylation of a threonine and a tyrosine residue in the MAP kinase p38. Part of a signaling cascade that begins with the activation of the adrenergic receptor ADRA1B and leads to the activation of MAPK14. {ECO:0000269|PubMed:21224381, ECO:0000269|PubMed:8622669}. | |
Ensembl transtripts involved in fusion gene | ENST ids | ENST00000262947, ENST00000599630, | ENST00000316920, ENST00000361818, ENST00000534743, ENST00000342679, |
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 4 X 4 X 4=64 | 5 X 5 X 3=75 |
# samples | 5 | 5 | |
** MAII score | log2(5/64*10)=-0.356143810225275 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(5/75*10)=-0.584962500721156 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Fusion gene context | PubMed: C19orf10 [Title/Abstract] AND MAP2K3 [Title/Abstract] AND fusion [Title/Abstract] | ||
Fusion neoantigen context | PubMed: C19orf10 [Title/Abstract] AND MAP2K3 [Title/Abstract] AND neoantigen [Title/Abstract] | ||
Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | C19orf10(4659942)-MAP2K3(21201724), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | C19orf10-MAP2K3 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. C19orf10-MAP2K3 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | C19orf10 | GO:0001938 | positive regulation of endothelial cell proliferation | 25581518 |
Hgene | C19orf10 | GO:0045766 | positive regulation of angiogenesis | 25581518 |
Tgene | MAP2K3 | GO:0045860 | positive regulation of protein kinase activity | 11980910 |
Tgene | MAP2K3 | GO:0045893 | positive regulation of transcription, DNA-templated | 11980910 |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr19:4659942/chr17:21201724) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Fusion Amino Acid Sequences |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000262947 | C19orf10 | chr19 | 4659942 | - | ENST00000342679 | MAP2K3 | chr17 | 21201724 | + | 2483 | 478 | 36 | 1472 | 478 |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000262947 | ENST00000342679 | C19orf10 | chr19 | 4659942 | - | MAP2K3 | chr17 | 21201724 | + | 0.003555243 | 0.99644476 |
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Get the fusion protein sequences from here. |
Fusion protein sequence information is available in the fasta format. >FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP |
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Fusion Protein Breakpoint Sequences for C19orf10-MAP2K3 |
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Hgene | Hchr | Hbp | Tgene | Tchr | Tbp | Length(fusion protein) | BP in fusion protein | Peptide |
C19orf10 | chr19 | 4659942 | MAP2K3 | chr17 | 21201724 | 478 | 147 | PLKTEEFEVTKTAGKSKRKKDLRISC |
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Potential FusionNeoAntigen Information of C19orf10-MAP2K3 in HLA I |
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C19orf10-MAP2K3_4659942_21201724.msa |
![]() * We used NetMHCpan v4.1 (%rank<0.5) and deepHLApan v1.1 (immunogenic score>0.5) |
Fusion gene | Hchr | Hbp | Tgene | Tchr | Tbp | HLA I | FusionNeoAntigen peptide | Binding score | Immunogenic score | Neoantigen start (at BP 13) | Neoantigen end (at BP 13) |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | HLA-A30:08 | KTAGKSKRK | 0.9947 | 0.749 | 10 | 19 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | HLA-A30:08 | VTKTAGKSK | 0.9885 | 0.8405 | 8 | 17 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | HLA-A74:09 | KTAGKSKRK | 0.9532 | 0.5032 | 10 | 19 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | HLA-A74:11 | KTAGKSKRK | 0.9532 | 0.5032 | 10 | 19 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | HLA-A74:03 | KTAGKSKRK | 0.9532 | 0.5032 | 10 | 19 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | HLA-A30:08 | KTAGKSKRKK | 0.9907 | 0.7712 | 10 | 20 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | HLA-A66:01 | EVTKTAGKSK | 0.9768 | 0.654 | 7 | 17 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | HLA-B50:02 | EEFEVTKTAG | 0.8436 | 0.6819 | 4 | 14 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | HLA-A30:01 | KTAGKSKRK | 0.9951 | 0.8196 | 10 | 19 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | HLA-A30:01 | VTKTAGKSK | 0.9875 | 0.911 | 8 | 17 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | HLA-A74:01 | KTAGKSKRK | 0.9532 | 0.5032 | 10 | 19 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | HLA-A30:01 | KTAGKSKRKK | 0.9908 | 0.8484 | 10 | 20 |
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Potential FusionNeoAntigen Information of C19orf10-MAP2K3 in HLA II |
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C19orf10-MAP2K3_4659942_21201724.msa |
![]() * We used NetMHCIIpan v4.1 (%rank<0.5). |
Fusion gene | Hchr | Hbp | Tgene | Tchr | Tbp | HLA II | FusionNeoAntigen peptide | Neoantigen start (at BP 13) | Neoantigen end (at BP 13) |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB1-0435 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB1-0813 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB1-0815 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB1-0830 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB1-0902 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB1-0902 | KTEEFEVTKTAGKSK | 2 | 17 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB1-1130 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB1-1367 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB1-1385 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB1-1386 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB1-1402 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB1-1402 | KTEEFEVTKTAGKSK | 2 | 17 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB1-1403 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB1-1409 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB1-1419 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB1-1424 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB1-1440 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB1-1441 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB1-1441 | KTEEFEVTKTAGKSK | 2 | 17 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB1-1446 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB1-1446 | KTEEFEVTKTAGKSK | 2 | 17 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB1-1447 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB1-1451 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB1-1451 | KTEEFEVTKTAGKSK | 2 | 17 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB1-1467 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB1-1477 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB1-1489 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB1-1489 | KTEEFEVTKTAGKSK | 2 | 17 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB1-1494 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB1-1494 | KTEEFEVTKTAGKSK | 2 | 17 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB1-1498 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0101 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0101 | KTEEFEVTKTAGKSK | 2 | 17 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0101 | EEFEVTKTAGKSKRK | 4 | 19 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0101 | LKTEEFEVTKTAGKS | 1 | 16 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0102 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0102 | KTEEFEVTKTAGKSK | 2 | 17 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0102 | EEFEVTKTAGKSKRK | 4 | 19 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0102 | LKTEEFEVTKTAGKS | 1 | 16 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0103 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0103 | KTEEFEVTKTAGKSK | 2 | 17 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0103 | EEFEVTKTAGKSKRK | 4 | 19 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0103 | LKTEEFEVTKTAGKS | 1 | 16 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0104 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0104 | KTEEFEVTKTAGKSK | 2 | 17 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0104 | EEFEVTKTAGKSKRK | 4 | 19 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0104 | LKTEEFEVTKTAGKS | 1 | 16 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0105 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0105 | KTEEFEVTKTAGKSK | 2 | 17 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0105 | EEFEVTKTAGKSKRK | 4 | 19 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0105 | LKTEEFEVTKTAGKS | 1 | 16 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0108N | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0108N | KTEEFEVTKTAGKSK | 2 | 17 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0108N | EEFEVTKTAGKSKRK | 4 | 19 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0108N | LKTEEFEVTKTAGKS | 1 | 16 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0111 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0111 | KTEEFEVTKTAGKSK | 2 | 17 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0111 | EEFEVTKTAGKSKRK | 4 | 19 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0111 | LKTEEFEVTKTAGKS | 1 | 16 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0112 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0112 | KTEEFEVTKTAGKSK | 2 | 17 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0112 | EEFEVTKTAGKSKRK | 4 | 19 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0112 | LKTEEFEVTKTAGKS | 1 | 16 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0113 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0113 | KTEEFEVTKTAGKSK | 2 | 17 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0113 | EEFEVTKTAGKSKRK | 4 | 19 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0113 | LKTEEFEVTKTAGKS | 1 | 16 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0114 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0114 | KTEEFEVTKTAGKSK | 2 | 17 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0114 | EEFEVTKTAGKSKRK | 4 | 19 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0114 | LKTEEFEVTKTAGKS | 1 | 16 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0203 | TEEFEVTKTAGKSKR | 3 | 18 |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 | DRB5-0203 | KTEEFEVTKTAGKSK | 2 | 17 |
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Fusion breakpoint peptide structures of C19orf10-MAP2K3 |
![]() * The minimum length of the amino acid sequence in RoseTTAFold is 14AA. Here, we predicted the 14AA fusion protein breakpoint sequence not the fusion neoantigen peptide, which is shorter than 14 AA. |
File name | BPseq | Hgene | Tgene | Hchr | Hbp | Tchr | Tbp | AAlen |
2353 | FEVTKTAGKSKRKK | C19orf10 | MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 478 |
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Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D of C19orf10-MAP2K3 |
![]() * We used Glide to predict the interaction between HLAs and neoantigens. |
HLA allele | PDB ID | File name | BPseq | Docking score | Glide score |
HLA-B14:02 | 3BVN | 2353 | FEVTKTAGKSKRKK | -8.55667 | -8.74867 |
HLA-B14:02 | 3BVN | 2353 | FEVTKTAGKSKRKK | -3.49457 | -4.25557 |
HLA-B52:01 | 3W39 | 2353 | FEVTKTAGKSKRKK | -7.26725 | -7.45925 |
HLA-B52:01 | 3W39 | 2353 | FEVTKTAGKSKRKK | -4.01461 | -4.77561 |
HLA-A24:02 | 5HGA | 2353 | FEVTKTAGKSKRKK | -7.65911 | -8.42011 |
HLA-A24:02 | 5HGA | 2353 | FEVTKTAGKSKRKK | -7.10204 | -7.29404 |
HLA-B44:05 | 3DX8 | 2353 | FEVTKTAGKSKRKK | -7.5556 | -8.3166 |
HLA-B44:05 | 3DX8 | 2353 | FEVTKTAGKSKRKK | -2.76159 | -2.95359 |
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Vaccine Design for the FusionNeoAntigens of C19orf10-MAP2K3 |
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Fusion gene | Hchr | Hbp | Tchr | Tbp | Start in +/-13AA | End in +/-13AA | FusionNeoAntigen peptide sequence | FusionNeoAntigen RNA sequence |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 10 | 19 | KTAGKSKRK | AAACAGCAGGAAAATCCAAGAGGAAGA |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 10 | 20 | KTAGKSKRKK | AAACAGCAGGAAAATCCAAGAGGAAGAAGG |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 4 | 14 | EEFEVTKTAG | AGGAATTTGAAGTGACCAAAACAGCAGGAA |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 7 | 17 | EVTKTAGKSK | AAGTGACCAAAACAGCAGGAAAATCCAAGA |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 8 | 17 | VTKTAGKSK | TGACCAAAACAGCAGGAAAATCCAAGA |
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Fusion gene | Hchr | Hbp | Tchr | Tbp | Start in +/-13AA | End in +/-13AA | FusionNeoAntigen peptide | FusionNEoAntigen RNA sequence |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 1 | 16 | LKTEEFEVTKTAGKS | TGAAAACTGAGGAATTTGAAGTGACCAAAACAGCAGGAAAATCCA |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 2 | 17 | KTEEFEVTKTAGKSK | AAACTGAGGAATTTGAAGTGACCAAAACAGCAGGAAAATCCAAGA |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 3 | 18 | TEEFEVTKTAGKSKR | CTGAGGAATTTGAAGTGACCAAAACAGCAGGAAAATCCAAGAGGA |
C19orf10-MAP2K3 | chr19 | 4659942 | chr17 | 21201724 | 4 | 19 | EEFEVTKTAGKSKRK | AGGAATTTGAAGTGACCAAAACAGCAGGAAAATCCAAGAGGAAGA |
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Information of the samples that have these potential fusion neoantigens of C19orf10-MAP2K3 |
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Cancer type | Fusion gene | Hchr | Hbp | Henst | Tchr | Tbp | Tenst | Sample |
SARC | C19orf10-MAP2K3 | chr19 | 4659942 | ENST00000262947 | chr17 | 21201724 | ENST00000342679 | TCGA-FX-A3TO |
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Potential target of CAR-T therapy development for C19orf10-MAP2K3 |
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![]() * Minus value of BPloci means that the break point is located before the CDS. |
- In-frame and retained 'Transmembrane'. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
![]() * We used DeepLoc 1.0. The order of the X-axis of the barplot is as follows: Entry_ID, Localization, Type, Nucleus, Cytoplasm, Extracellular, Mitochondrion, Cell_membrane, Endoplasmic_reticulum, Plastid, Golgi.apparatus, Lysosome.Vacuole, Peroxisome. Y-axis is the output score of DeepLoc. Clicking the image will open a new tab with a large image. |
Hgene | Hchr | Hbp | Henst | Tgene | Tchr | Tbp | Tenst | DeepLoc result |
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Related Drugs to C19orf10-MAP2K3 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Drug | Source | PMID |
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Related Diseases to C19orf10-MAP2K3 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Disease | Source | PMID |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |