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Fusion Protein:CHST11-HSP90B1 |
Fusion Gene and Fusion Protein Summary |
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Fusion partner gene information | Fusion gene name: CHST11-HSP90B1 | FusionPDB ID: 16683 | FusionGDB2.0 ID: 16683 | Hgene | Tgene | Gene symbol | CHST11 | HSP90B1 | Gene ID | 50515 | 7184 |
Gene name | carbohydrate sulfotransferase 11 | heat shock protein 90 beta family member 1 | |
Synonyms | C4ST|C4ST-1|C4ST1|HSA269537|OCBMD | ECGP|GP96|GRP94|HEL-S-125m|HEL35|TRA1 | |
Cytomap | 12q23.3 | 12q23.3 | |
Type of gene | protein-coding | protein-coding | |
Description | carbohydrate sulfotransferase 11C4S-1IgH/CHST11 fusioncarbohydrate (chondroitin 4) sulfotransferase 11chondroitin 4-O-sulfotransferase 1 | endoplasmin94 kDa glucose-regulated proteinendothelial cell (HBMEC) glycoproteinepididymis luminal protein 35epididymis secretory sperm binding protein Li 125mheat shock protein 90 kDa beta member 1heat shock protein 90kDa beta (Grp94), member 1hea | |
Modification date | 20200313 | 20200320 | |
UniProtAcc | Q9NPF2 Main function of 5'-partner protein: FUNCTION: Catalyzes the transfer of sulfate to position 4 of the N-acetylgalactosamine (GalNAc) residue of chondroitin. Chondroitin sulfate constitutes the predominant proteoglycan present in cartilage and is distributed on the surfaces of many cells and extracellular matrices. Can also sulfate Gal residues in desulfated dermatan sulfate. Preferentially sulfates in GlcA->GalNAc unit than in IdoA->GalNAc unit. Does not form 4, 6-di-O-sulfated GalNAc when chondroitin sulfate C is used as an acceptor. | P14625 Main function of 5'-partner protein: FUNCTION: Molecular chaperone that functions in the processing and transport of secreted proteins (By similarity). When associated with CNPY3, required for proper folding of Toll-like receptors (By similarity). Functions in endoplasmic reticulum associated degradation (ERAD) (PubMed:18264092). Has ATPase activity (By similarity). May participate in the unfolding of cytosolic leaderless cargos (lacking the secretion signal sequence) such as the interleukin 1/IL-1 to facilitate their translocation into the ERGIC (endoplasmic reticulum-Golgi intermediate compartment) and secretion; the translocation process is mediated by the cargo receptor TMED10 (PubMed:32272059). {ECO:0000250|UniProtKB:P08113, ECO:0000269|PubMed:18264092, ECO:0000269|PubMed:32272059}. | |
Ensembl transtripts involved in fusion gene | ENST ids | ENST00000303694, ENST00000546689, ENST00000547956, ENST00000549260, ENST00000550711, | ENST00000299767, |
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 13 X 8 X 6=624 | 21 X 21 X 8=3528 |
# samples | 15 | 25 | |
** MAII score | log2(15/624*10)=-2.05658352836637 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(25/3528*10)=-3.81885056089543 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Fusion gene context | PubMed: CHST11 [Title/Abstract] AND HSP90B1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Fusion neoantigen context | PubMed: CHST11 [Title/Abstract] AND HSP90B1 [Title/Abstract] AND neoantigen [Title/Abstract] | ||
Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | CHST11(104995769)-HSP90B1(104333287), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. | CHST11-HSP90B1 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. CHST11-HSP90B1 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | CHST11 | GO:0030206 | chondroitin sulfate biosynthetic process | 11056388 |
Tgene | HSP90B1 | GO:0001666 | response to hypoxia | 15620698 |
Tgene | HSP90B1 | GO:0031247 | actin rod assembly | 19000834 |
Tgene | HSP90B1 | GO:0043666 | regulation of phosphoprotein phosphatase activity | 19000834 |
Tgene | HSP90B1 | GO:0071318 | cellular response to ATP | 19000834 |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr12:104995769/chr12:104333287) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Fusion Amino Acid Sequences |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000547956 | CHST11 | chr12 | 104995769 | + | ENST00000299767 | HSP90B1 | chr12 | 104333287 | + | 2551 | 850 | 814 | 2286 | 490 |
ENST00000549260 | CHST11 | chr12 | 104995769 | + | ENST00000299767 | HSP90B1 | chr12 | 104333287 | + | 2331 | 630 | 12 | 2066 | 684 |
ENST00000303694 | CHST11 | chr12 | 104995769 | + | ENST00000299767 | HSP90B1 | chr12 | 104333287 | + | 2344 | 643 | 10 | 2079 | 689 |
ENST00000546689 | CHST11 | chr12 | 104995769 | + | ENST00000299767 | HSP90B1 | chr12 | 104333287 | + | 2371 | 670 | 700 | 2106 | 468 |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000547956 | ENST00000299767 | CHST11 | chr12 | 104995769 | + | HSP90B1 | chr12 | 104333287 | + | 0.000506149 | 0.99949384 |
ENST00000549260 | ENST00000299767 | CHST11 | chr12 | 104995769 | + | HSP90B1 | chr12 | 104333287 | + | 0.001145799 | 0.99885416 |
ENST00000303694 | ENST00000299767 | CHST11 | chr12 | 104995769 | + | HSP90B1 | chr12 | 104333287 | + | 0.001691926 | 0.99830806 |
ENST00000546689 | ENST00000299767 | CHST11 | chr12 | 104995769 | + | HSP90B1 | chr12 | 104333287 | + | 0.000510725 | 0.9994893 |
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Get the fusion protein sequences from here. |
Fusion protein sequence information is available in the fasta format. >FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP |
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Fusion Protein Breakpoint Sequences for CHST11-HSP90B1 |
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Hgene | Hchr | Hbp | Tgene | Tchr | Tbp | Length(fusion protein) | BP in fusion protein | Peptide |
CHST11 | chr12 | 104995769 | HSP90B1 | chr12 | 104333287 | 630 | 205 | GSRSPLQELYNPIQVEKTVWDWELMN |
CHST11 | chr12 | 104995769 | HSP90B1 | chr12 | 104333287 | 643 | 210 | GSRSPLQELYNPIQVEKTVWDWELMN |
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Potential FusionNeoAntigen Information of CHST11-HSP90B1 in HLA I |
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CHST11-HSP90B1_104995769_104333287.msa |
![]() * We used NetMHCpan v4.1 (%rank<0.5) and deepHLApan v1.1 (immunogenic score>0.5) |
Fusion gene | Hchr | Hbp | Tgene | Tchr | Tbp | HLA I | FusionNeoAntigen peptide | Binding score | Immunogenic score | Neoantigen start (at BP 13) | Neoantigen end (at BP 13) |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B45:01 | QELYNPIQV | 0.9976 | 0.9498 | 6 | 15 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B50:02 | QELYNPIQV | 0.9975 | 0.5816 | 6 | 15 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B44:03 | QELYNPIQV | 0.9034 | 0.9773 | 6 | 15 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B47:01 | QELYNPIQV | 0.8632 | 0.6221 | 6 | 15 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B35:02 | NPIQVEKTV | 0.8502 | 0.9471 | 10 | 19 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B35:04 | NPIQVEKTV | 0.8502 | 0.9471 | 10 | 19 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B35:03 | NPIQVEKTV | 0.8124 | 0.8891 | 10 | 19 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B41:01 | QELYNPIQV | 0.7737 | 0.9771 | 6 | 15 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B50:01 | QELYNPIQV | 0.6844 | 0.7501 | 6 | 15 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B35:05 | NPIQVEKTV | 0.6309 | 0.6278 | 10 | 19 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B08:09 | NPIQVEKTV | 0.5815 | 0.7415 | 10 | 19 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B39:13 | QELYNPIQV | 0.4073 | 0.9811 | 6 | 15 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B53:01 | NPIQVEKTVW | 0.9735 | 0.6225 | 10 | 20 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B51:07 | ELYNPIQV | 0.9709 | 0.6364 | 7 | 15 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B40:06 | QELYNPIQV | 0.999 | 0.754 | 6 | 15 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B78:01 | NPIQVEKTV | 0.9471 | 0.5064 | 10 | 19 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B51:07 | NPIQVEKTV | 0.9462 | 0.7026 | 10 | 19 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B35:12 | NPIQVEKTV | 0.8502 | 0.9471 | 10 | 19 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B42:02 | NPIQVEKTV | 0.7081 | 0.7231 | 10 | 19 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B42:01 | NPIQVEKTV | 0.6522 | 0.7109 | 10 | 19 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B39:10 | NPIQVEKTV | 0.2396 | 0.9678 | 10 | 19 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B15:24 | IQVEKTVW | 0.9979 | 0.9155 | 12 | 20 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B40:04 | QELYNPIQV | 0.9939 | 0.7638 | 6 | 15 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B78:02 | NPIQVEKTV | 0.9574 | 0.635 | 10 | 19 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B44:26 | QELYNPIQV | 0.9034 | 0.9773 | 6 | 15 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B44:13 | QELYNPIQV | 0.9034 | 0.9773 | 6 | 15 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B44:07 | QELYNPIQV | 0.9034 | 0.9773 | 6 | 15 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-A30:01 | LYNPIQVEK | 0.8591 | 0.7346 | 8 | 17 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B35:09 | NPIQVEKTV | 0.8502 | 0.9471 | 10 | 19 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B41:03 | QELYNPIQV | 0.7934 | 0.8456 | 6 | 15 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B50:05 | QELYNPIQV | 0.6844 | 0.7501 | 6 | 15 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B50:04 | QELYNPIQV | 0.6844 | 0.7501 | 6 | 15 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B35:17 | NPIQVEKTV | 0.6262 | 0.8458 | 10 | 19 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B35:30 | NPIQVEKTV | 0.6262 | 0.8458 | 10 | 19 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B35:24 | NPIQVEKTV | 0.437 | 0.9143 | 10 | 19 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B67:01 | NPIQVEKTV | 0.4261 | 0.7743 | 10 | 19 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B18:07 | NPIQVEKTV | 0.0534 | 0.8333 | 10 | 19 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B15:24 | IQVEKTVWDW | 0.9939 | 0.958 | 12 | 22 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B15:13 | NPIQVEKTVW | 0.9621 | 0.7403 | 10 | 20 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B53:02 | NPIQVEKTVW | 0.8802 | 0.8194 | 10 | 20 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B51:06 | NPIQVEKTVW | 0.3026 | 0.7936 | 10 | 20 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | HLA-B53:02 | YNPIQVEKTVW | 0.996 | 0.7517 | 9 | 20 |
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Potential FusionNeoAntigen Information of CHST11-HSP90B1 in HLA II |
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CHST11-HSP90B1_104995769_104333287.msa |
![]() * We used NetMHCIIpan v4.1 (%rank<0.5). |
Fusion gene | Hchr | Hbp | Tgene | Tchr | Tbp | HLA II | FusionNeoAntigen peptide | Neoantigen start (at BP 13) | Neoantigen end (at BP 13) |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | DRB1-0411 | LYNPIQVEKTVWDWE | 8 | 23 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | DRB1-0440 | RSPLQELYNPIQVEK | 2 | 17 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | DRB1-0442 | RSPLQELYNPIQVEK | 2 | 17 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | DRB1-0456 | RSPLQELYNPIQVEK | 2 | 17 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | DRB1-0467 | LYNPIQVEKTVWDWE | 8 | 23 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | DRB1-0467 | YNPIQVEKTVWDWEL | 9 | 24 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | DRB1-0468 | RSPLQELYNPIQVEK | 2 | 17 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | DRB1-0470 | RSPLQELYNPIQVEK | 2 | 17 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | DRB1-0491 | LYNPIQVEKTVWDWE | 8 | 23 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | DRB1-1001 | QELYNPIQVEKTVWD | 6 | 21 |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 | DRB1-1003 | QELYNPIQVEKTVWD | 6 | 21 |
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Fusion breakpoint peptide structures of CHST11-HSP90B1 |
![]() * The minimum length of the amino acid sequence in RoseTTAFold is 14AA. Here, we predicted the 14AA fusion protein breakpoint sequence not the fusion neoantigen peptide, which is shorter than 14 AA. |
File name | BPseq | Hgene | Tgene | Hchr | Hbp | Tchr | Tbp | AAlen |
7233 | QELYNPIQVEKTVW | CHST11 | HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 643 |
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Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D of CHST11-HSP90B1 |
![]() * We used Glide to predict the interaction between HLAs and neoantigens. |
HLA allele | PDB ID | File name | BPseq | Docking score | Glide score |
HLA-B53:01 | 1A1O | 7233 | QELYNPIQVEKTVW | -1.20162 | -2.23692 |
HLA-B51:01 | 1E28 | 7233 | QELYNPIQVEKTVW | -4.67742 | -5.71272 |
HLA-B57:03 | 2BVO | 7233 | QELYNPIQVEKTVW | -3.57384 | -3.68724 |
HLA-A03:01 | 2XPG | 7233 | QELYNPIQVEKTVW | -2.81241 | -3.84771 |
HLA-A03:01 | 2XPG | 7233 | QELYNPIQVEKTVW | -2.75108 | -2.86448 |
HLA-B14:02 | 3BVN | 7233 | QELYNPIQVEKTVW | -6.6298 | -6.7432 |
HLA-B14:02 | 3BVN | 7233 | QELYNPIQVEKTVW | -5.03588 | -6.07118 |
HLA-B27:09 | 3CZF | 7233 | QELYNPIQVEKTVW | -2.72034 | -3.75564 |
HLA-B44:03 | 3DX7 | 7233 | QELYNPIQVEKTVW | -0.953592 | -1.98889 |
HLA-B52:01 | 3W39 | 7233 | QELYNPIQVEKTVW | -5.17052 | -5.28392 |
HLA-B52:01 | 3W39 | 7233 | QELYNPIQVEKTVW | -2.67174 | -3.70704 |
HLA-B18:01 | 4JQV | 7233 | QELYNPIQVEKTVW | -3.88279 | -3.99619 |
HLA-B18:01 | 4JQV | 7233 | QELYNPIQVEKTVW | -2.06796 | -3.10326 |
HLA-A11:01 | 4UQ2 | 7233 | QELYNPIQVEKTVW | -8.93359 | -9.04699 |
HLA-A11:01 | 4UQ2 | 7233 | QELYNPIQVEKTVW | -8.08854 | -9.12384 |
HLA-A24:02 | 5HGA | 7233 | QELYNPIQVEKTVW | -6.7667 | -6.8801 |
HLA-A24:02 | 5HGA | 7233 | QELYNPIQVEKTVW | -4.92764 | -5.96294 |
HLA-B57:01 | 5VUD | 7233 | QELYNPIQVEKTVW | -2.30317 | -3.33847 |
HLA-B27:05 | 6PYJ | 7233 | QELYNPIQVEKTVW | -4.30074 | -4.41414 |
HLA-B27:05 | 6PYJ | 7233 | QELYNPIQVEKTVW | -2.70769 | -3.74299 |
HLA-B27:03 | 6PZ5 | 7233 | QELYNPIQVEKTVW | -3.25646 | -4.29176 |
HLA-B27:03 | 6PZ5 | 7233 | QELYNPIQVEKTVW | -1.00133 | -1.11473 |
HLA-B44:05 | 3DX8 | 7233 | QELYNPIQVEKTVW | -5.00036 | -5.11376 |
HLA-B44:05 | 3DX8 | 7233 | QELYNPIQVEKTVW | -4.13613 | -5.17143 |
HLA-B07:02 | 5EO0 | 7233 | QELYNPIQVEKTVW | -1.03752 | -2.07282 |
HLA-A02:01 | 6TDR | 7233 | QELYNPIQVEKTVW | -5.74233 | -6.77763 |
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Vaccine Design for the FusionNeoAntigens of CHST11-HSP90B1 |
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Fusion gene | Hchr | Hbp | Tchr | Tbp | Start in +/-13AA | End in +/-13AA | FusionNeoAntigen peptide sequence | FusionNeoAntigen RNA sequence |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 10 | 19 | NPIQVEKTV | CCAATCCAGGTTGAAAAAACTGTCTGG |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 10 | 20 | NPIQVEKTVW | CCAATCCAGGTTGAAAAAACTGTCTGGGAC |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 12 | 20 | IQVEKTVW | CAGGTTGAAAAAACTGTCTGGGAC |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 12 | 22 | IQVEKTVWDW | CAGGTTGAAAAAACTGTCTGGGACTGGGAA |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 6 | 15 | QELYNPIQV | GAACTCTACAACCCAATCCAGGTTGAA |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 7 | 15 | ELYNPIQV | CTCTACAACCCAATCCAGGTTGAA |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 8 | 17 | LYNPIQVEK | TACAACCCAATCCAGGTTGAAAAAACT |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 9 | 20 | YNPIQVEKTVW | AACCCAATCCAGGTTGAAAAAACTGTCTGGGAC |
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Fusion gene | Hchr | Hbp | Tchr | Tbp | Start in +/-13AA | End in +/-13AA | FusionNeoAntigen peptide | FusionNEoAntigen RNA sequence |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 2 | 17 | RSPLQELYNPIQVEK | AGCCCCCTGCAGGAACTCTACAACCCAATCCAGGTTGAAAAAACT |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 6 | 21 | QELYNPIQVEKTVWD | GAACTCTACAACCCAATCCAGGTTGAAAAAACTGTCTGGGACTGG |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 8 | 23 | LYNPIQVEKTVWDWE | TACAACCCAATCCAGGTTGAAAAAACTGTCTGGGACTGGGAACTT |
CHST11-HSP90B1 | chr12 | 104995769 | chr12 | 104333287 | 9 | 24 | YNPIQVEKTVWDWEL | AACCCAATCCAGGTTGAAAAAACTGTCTGGGACTGGGAACTTATG |
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Information of the samples that have these potential fusion neoantigens of CHST11-HSP90B1 |
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Cancer type | Fusion gene | Hchr | Hbp | Henst | Tchr | Tbp | Tenst | Sample |
OV | CHST11-HSP90B1 | chr12 | 104995769 | ENST00000303694 | chr12 | 104333287 | ENST00000299767 | TCGA-23-1028-01A |
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Potential target of CAR-T therapy development for CHST11-HSP90B1 |
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![]() * Minus value of BPloci means that the break point is located before the CDS. |
- In-frame and retained 'Transmembrane'. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | CHST11 | chr12:104995769 | chr12:104333287 | ENST00000303694 | + | 2 | 3 | 17_37 | 68 | 353.0 | Transmembrane | Helical%3B Signal-anchor for type II membrane protein |
Hgene | CHST11 | chr12:104995769 | chr12:104333287 | ENST00000549260 | + | 2 | 3 | 17_37 | 63 | 348.0 | Transmembrane | Helical%3B Signal-anchor for type II membrane protein |
![]() * We used DeepLoc 1.0. The order of the X-axis of the barplot is as follows: Entry_ID, Localization, Type, Nucleus, Cytoplasm, Extracellular, Mitochondrion, Cell_membrane, Endoplasmic_reticulum, Plastid, Golgi.apparatus, Lysosome.Vacuole, Peroxisome. Y-axis is the output score of DeepLoc. Clicking the image will open a new tab with a large image. |
Hgene | Hchr | Hbp | Henst | Tgene | Tchr | Tbp | Tenst | DeepLoc result |
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Related Drugs to CHST11-HSP90B1 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Drug | Source | PMID |
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Related Diseases to CHST11-HSP90B1 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Disease | Source | PMID |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |