![]() |
|||||||
|
Fusion Protein:CIRBP-PKNOX1 |
Fusion Gene and Fusion Protein Summary |
![]() |
Fusion partner gene information | Fusion gene name: CIRBP-PKNOX1 | FusionPDB ID: 16835 | FusionGDB2.0 ID: 16835 | Hgene | Tgene | Gene symbol | CIRBP | PKNOX1 | Gene ID | 1153 | 5316 |
Gene name | cold inducible RNA binding protein | PBX/knotted 1 homeobox 1 | |
Synonyms | CIRP | PREP1|pkonx1c | |
Cytomap | 19p13.3 | 21q22.3 | |
Type of gene | protein-coding | protein-coding | |
Description | cold-inducible RNA-binding proteinA18 hnRNPglycine-rich RNA binding proteintesticular tissue protein Li 39 | homeobox protein PKNOX1PBX/knotted homeobox 1Pbx regulating protein-1homeobox protein PREP-1human homeobox-containing protein | |
Modification date | 20200327 | 20200313 | |
UniProtAcc | Q14011 Main function of 5'-partner protein: FUNCTION: Cold-inducible mRNA binding protein that plays a protective role in the genotoxic stress response by stabilizing transcripts of genes involved in cell survival. Acts as a translational activator. Seems to play an essential role in cold-induced suppression of cell proliferation. Binds specifically to the 3'-untranslated regions (3'-UTRs) of stress-responsive transcripts RPA2 and TXN. Acts as a translational repressor (By similarity). Promotes assembly of stress granules (SGs), when overexpressed. {ECO:0000250, ECO:0000269|PubMed:11574538, ECO:0000269|PubMed:16513844}. | . | |
Ensembl transtripts involved in fusion gene | ENST ids | ENST00000320936, ENST00000444172, ENST00000585630, ENST00000586472, ENST00000586773, ENST00000587323, ENST00000587896, ENST00000588030, ENST00000588090, ENST00000588230, ENST00000589235, ENST00000589660, ENST00000589686, ENST00000589710, ENST00000591935, ENST00000413636, ENST00000590188, | ENST00000607150, ENST00000291547, ENST00000432907, |
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 12 X 7 X 6=504 | 13 X 10 X 6=780 |
# samples | 13 | 15 | |
** MAII score | log2(13/504*10)=-1.95491211047146 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(15/780*10)=-2.37851162325373 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Fusion gene context | PubMed: CIRBP [Title/Abstract] AND PKNOX1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Fusion neoantigen context | PubMed: CIRBP [Title/Abstract] AND PKNOX1 [Title/Abstract] AND neoantigen [Title/Abstract] | ||
Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | CIRBP(1271411)-PKNOX1(44450156), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | CIRBP-PKNOX1 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. CIRBP-PKNOX1 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. CIRBP-PKNOX1 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. CIRBP-PKNOX1 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. CIRBP-PKNOX1 seems lost the major protein functional domain in Tgene partner, which is a transcription factor due to the frame-shifted ORF. CIRBP-PKNOX1 seems lost the major protein functional domain in Tgene partner, which is a tumor suppressor due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
![]() |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | CIRBP | GO:0009411 | response to UV | 11574538 |
Hgene | CIRBP | GO:0045727 | positive regulation of translation | 11574538 |
Hgene | CIRBP | GO:0048255 | mRNA stabilization | 11574538 |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr19:1271411/chr21:44450156) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
![]() |
![]() |
![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
![]() |
![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
![]() |
Top |
Fusion Amino Acid Sequences |
![]() |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000588030 | CIRBP | chr19 | 1271411 | + | ENST00000432907 | PKNOX1 | chr21 | 44450156 | + | 810 | 525 | 26 | 601 | 191 |
ENST00000589660 | CIRBP | chr19 | 1271411 | + | ENST00000432907 | PKNOX1 | chr21 | 44450156 | + | 605 | 320 | 55 | 396 | 113 |
ENST00000588090 | CIRBP | chr19 | 1271411 | + | ENST00000432907 | PKNOX1 | chr21 | 44450156 | + | 761 | 476 | 118 | 552 | 144 |
ENST00000591935 | CIRBP | chr19 | 1271411 | + | ENST00000432907 | PKNOX1 | chr21 | 44450156 | + | 620 | 335 | 46 | 411 | 121 |
ENST00000589710 | CIRBP | chr19 | 1271411 | + | ENST00000432907 | PKNOX1 | chr21 | 44450156 | + | 697 | 412 | 132 | 488 | 118 |
ENST00000588230 | CIRBP | chr19 | 1271411 | + | ENST00000432907 | PKNOX1 | chr21 | 44450156 | + | 635 | 350 | 64 | 426 | 120 |
ENST00000586472 | CIRBP | chr19 | 1271411 | + | ENST00000432907 | PKNOX1 | chr21 | 44450156 | + | 635 | 350 | 64 | 426 | 120 |
ENST00000589686 | CIRBP | chr19 | 1271411 | + | ENST00000432907 | PKNOX1 | chr21 | 44450156 | + | 696 | 411 | 131 | 487 | 118 |
ENST00000444172 | CIRBP | chr19 | 1271411 | + | ENST00000432907 | PKNOX1 | chr21 | 44450156 | + | 525 | 240 | 125 | 316 | 63 |
ENST00000587323 | CIRBP | chr19 | 1271411 | + | ENST00000432907 | PKNOX1 | chr21 | 44450156 | + | 630 | 345 | 59 | 421 | 120 |
ENST00000320936 | CIRBP | chr19 | 1271411 | + | ENST00000432907 | PKNOX1 | chr21 | 44450156 | + | 630 | 345 | 59 | 421 | 120 |
ENST00000587896 | CIRBP | chr19 | 1271411 | + | ENST00000432907 | PKNOX1 | chr21 | 44450156 | + | 621 | 336 | 11 | 412 | 133 |
ENST00000589235 | CIRBP | chr19 | 1271411 | + | ENST00000432907 | PKNOX1 | chr21 | 44450156 | + | 617 | 332 | 46 | 408 | 120 |
ENST00000585630 | CIRBP | chr19 | 1271411 | + | ENST00000432907 | PKNOX1 | chr21 | 44450156 | + | 618 | 333 | 53 | 409 | 118 |
ENST00000586773 | CIRBP | chr19 | 1271411 | + | ENST00000432907 | PKNOX1 | chr21 | 44450156 | + | 599 | 314 | 34 | 390 | 118 |
![]() |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000588030 | ENST00000432907 | CIRBP | chr19 | 1271411 | + | PKNOX1 | chr21 | 44450156 | + | 0.46627837 | 0.5337217 |
ENST00000589660 | ENST00000432907 | CIRBP | chr19 | 1271411 | + | PKNOX1 | chr21 | 44450156 | + | 0.3026048 | 0.6973952 |
ENST00000588090 | ENST00000432907 | CIRBP | chr19 | 1271411 | + | PKNOX1 | chr21 | 44450156 | + | 0.52368414 | 0.47631583 |
ENST00000591935 | ENST00000432907 | CIRBP | chr19 | 1271411 | + | PKNOX1 | chr21 | 44450156 | + | 0.5232948 | 0.4767052 |
ENST00000589710 | ENST00000432907 | CIRBP | chr19 | 1271411 | + | PKNOX1 | chr21 | 44450156 | + | 0.46131095 | 0.538689 |
ENST00000588230 | ENST00000432907 | CIRBP | chr19 | 1271411 | + | PKNOX1 | chr21 | 44450156 | + | 0.4540677 | 0.5459323 |
ENST00000586472 | ENST00000432907 | CIRBP | chr19 | 1271411 | + | PKNOX1 | chr21 | 44450156 | + | 0.4540677 | 0.5459323 |
ENST00000589686 | ENST00000432907 | CIRBP | chr19 | 1271411 | + | PKNOX1 | chr21 | 44450156 | + | 0.43979123 | 0.5602088 |
ENST00000444172 | ENST00000432907 | CIRBP | chr19 | 1271411 | + | PKNOX1 | chr21 | 44450156 | + | 0.882474 | 0.11752604 |
ENST00000587323 | ENST00000432907 | CIRBP | chr19 | 1271411 | + | PKNOX1 | chr21 | 44450156 | + | 0.45305884 | 0.54694116 |
ENST00000320936 | ENST00000432907 | CIRBP | chr19 | 1271411 | + | PKNOX1 | chr21 | 44450156 | + | 0.45305884 | 0.54694116 |
ENST00000587896 | ENST00000432907 | CIRBP | chr19 | 1271411 | + | PKNOX1 | chr21 | 44450156 | + | 0.4769931 | 0.5230069 |
ENST00000589235 | ENST00000432907 | CIRBP | chr19 | 1271411 | + | PKNOX1 | chr21 | 44450156 | + | 0.43894953 | 0.5610505 |
ENST00000585630 | ENST00000432907 | CIRBP | chr19 | 1271411 | + | PKNOX1 | chr21 | 44450156 | + | 0.3642256 | 0.6357744 |
ENST00000586773 | ENST00000432907 | CIRBP | chr19 | 1271411 | + | PKNOX1 | chr21 | 44450156 | + | 0.36507106 | 0.63492894 |
![]() |
Get the fusion protein sequences from here. |
Fusion protein sequence information is available in the fasta format. >FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP |
Top |
Fusion Protein Breakpoint Sequences for CIRBP-PKNOX1 |
![]() |
Hgene | Hchr | Hbp | Tgene | Tchr | Tbp | Length(fusion protein) | BP in fusion protein | Peptide |
CIRBP | chr19 | 1271411 | PKNOX1 | chr21 | 44450156 | 240 | 39 | RGGRGRGRGFSRGPLPTSAGWSWRTV |
CIRBP | chr19 | 1271411 | PKNOX1 | chr21 | 44450156 | 314 | 94 | RGGRGRGRGFSRGPLPTSAGWSWRTV |
CIRBP | chr19 | 1271411 | PKNOX1 | chr21 | 44450156 | 320 | 89 | RGGRGRGRGFSRGPLPTSAGWSWRTV |
CIRBP | chr19 | 1271411 | PKNOX1 | chr21 | 44450156 | 332 | 96 | RGGRGRGRGFSRGPLPTSAGWSWRTV |
CIRBP | chr19 | 1271411 | PKNOX1 | chr21 | 44450156 | 333 | 94 | RGGRGRGRGFSRGPLPTSAGWSWRTV |
CIRBP | chr19 | 1271411 | PKNOX1 | chr21 | 44450156 | 335 | 97 | RGGRGRGRGFSRGPLPTSAGWSWRTV |
CIRBP | chr19 | 1271411 | PKNOX1 | chr21 | 44450156 | 336 | 109 | RGGRGRGRGFSRGPLPTSAGWSWRTV |
CIRBP | chr19 | 1271411 | PKNOX1 | chr21 | 44450156 | 345 | 96 | RGGRGRGRGFSRGPLPTSAGWSWRTV |
CIRBP | chr19 | 1271411 | PKNOX1 | chr21 | 44450156 | 350 | 96 | RGGRGRGRGFSRGPLPTSAGWSWRTV |
CIRBP | chr19 | 1271411 | PKNOX1 | chr21 | 44450156 | 411 | 94 | RGGRGRGRGFSRGPLPTSAGWSWRTV |
CIRBP | chr19 | 1271411 | PKNOX1 | chr21 | 44450156 | 412 | 94 | RGGRGRGRGFSRGPLPTSAGWSWRTV |
CIRBP | chr19 | 1271411 | PKNOX1 | chr21 | 44450156 | 476 | 120 | RGGRGRGRGFSRGPLPTSAGWSWRTV |
CIRBP | chr19 | 1271411 | PKNOX1 | chr21 | 44450156 | 525 | 167 | RGGRGRGRGFSRGPLPTSAGWSWRTV |
Top |
Potential FusionNeoAntigen Information of CIRBP-PKNOX1 in HLA I |
![]() |
CIRBP-PKNOX1_1271411_44450156.msa |
![]() * We used NetMHCpan v4.1 (%rank<0.5) and deepHLApan v1.1 (immunogenic score>0.5) |
Fusion gene | Hchr | Hbp | Tgene | Tchr | Tbp | HLA I | FusionNeoAntigen peptide | Binding score | Immunogenic score | Neoantigen start (at BP 13) | Neoantigen end (at BP 13) |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 345 | HLA-B39:06 | SRGPLPTSA | 0.9976 | 0.9378 | 10 | 19 |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 345 | HLA-B39:24 | SRGPLPTSA | 0.997 | 0.7632 | 10 | 19 |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 345 | HLA-B53:01 | GPLPTSAGW | 0.9293 | 0.8803 | 12 | 21 |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 345 | HLA-B07:10 | SRGPLPTSA | 0.0279 | 0.6486 | 10 | 19 |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 345 | HLA-B57:01 | RGPLPTSAGW | 0.999 | 0.9716 | 11 | 21 |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 345 | HLA-B58:02 | RGPLPTSAGW | 0.9971 | 0.9747 | 11 | 21 |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 345 | HLA-B58:01 | RGPLPTSAGW | 0.9927 | 0.968 | 11 | 21 |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 345 | HLA-B57:03 | RGPLPTSAGW | 0.9619 | 0.9939 | 11 | 21 |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 345 | HLA-B39:06 | FSRGPLPTSA | 0.9063 | 0.9228 | 9 | 19 |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 345 | HLA-B53:01 | RGPLPTSAGW | 0.7628 | 0.8407 | 11 | 21 |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 345 | HLA-B53:01 | SRGPLPTSAGW | 0.9772 | 0.6268 | 10 | 21 |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 345 | HLA-B53:01 | GPLPTSAGWSW | 0.9751 | 0.8403 | 12 | 23 |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 345 | HLA-B73:01 | SRGPLPTSA | 0.995 | 0.947 | 10 | 19 |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 345 | HLA-B39:12 | SRGPLPTSA | 0.9947 | 0.8875 | 10 | 19 |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 345 | HLA-B44:06 | GPLPTSAGW | 0.1052 | 0.6732 | 12 | 21 |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 345 | HLA-B73:01 | FSRGPLPTSA | 0.9656 | 0.9468 | 9 | 19 |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 345 | HLA-B44:06 | RGPLPTSAGW | 0.6472 | 0.5801 | 11 | 21 |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 345 | HLA-B27:03 | SRGPLPTSAGW | 0.9979 | 0.5169 | 10 | 21 |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 345 | HLA-B44:06 | SRGPLPTSAGW | 0.9821 | 0.5499 | 10 | 21 |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 345 | HLA-B44:06 | GPLPTSAGWSW | 0.8943 | 0.5452 | 12 | 23 |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 345 | HLA-B39:31 | SRGPLPTSA | 0.9954 | 0.8852 | 10 | 19 |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 345 | HLA-B07:09 | GPLPTSAGW | 0.9553 | 0.5715 | 12 | 21 |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 345 | HLA-B15:13 | GPLPTSAGW | 0.8335 | 0.9896 | 12 | 21 |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 345 | HLA-B53:02 | GPLPTSAGW | 0.8232 | 0.8966 | 12 | 21 |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 345 | HLA-B51:06 | GPLPTSAGW | 0.0324 | 0.9708 | 12 | 21 |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 345 | HLA-B57:10 | RGPLPTSAGW | 0.999 | 0.9716 | 11 | 21 |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 345 | HLA-B57:02 | RGPLPTSAGW | 0.9385 | 0.9762 | 11 | 21 |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 345 | HLA-B53:02 | RGPLPTSAGW | 0.5071 | 0.8293 | 11 | 21 |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 345 | HLA-B53:02 | GPLPTSAGWSW | 0.9542 | 0.8137 | 12 | 23 |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 345 | HLA-B53:02 | SRGPLPTSAGW | 0.8889 | 0.6467 | 10 | 21 |
Top |
Potential FusionNeoAntigen Information of CIRBP-PKNOX1 in HLA II |
![]() |
![]() * We used NetMHCIIpan v4.1 (%rank<0.5). |
Fusion gene | Hchr | Hbp | Tgene | Tchr | Tbp | HLA II | FusionNeoAntigen peptide | Neoantigen start (at BP 13) | Neoantigen end (at BP 13) |
Top |
Fusion breakpoint peptide structures of CIRBP-PKNOX1 |
![]() * The minimum length of the amino acid sequence in RoseTTAFold is 14AA. Here, we predicted the 14AA fusion protein breakpoint sequence not the fusion neoantigen peptide, which is shorter than 14 AA. |
File name | BPseq | Hgene | Tgene | Hchr | Hbp | Tchr | Tbp | AAlen |
3079 | GRGFSRGPLPTSAG | CIRBP | PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 345 |
Top |
Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D of CIRBP-PKNOX1 |
![]() * We used Glide to predict the interaction between HLAs and neoantigens. |
HLA allele | PDB ID | File name | BPseq | Docking score | Glide score |
HLA-B14:02 | 3BVN | 3079 | GRGFSRGPLPTSAG | -5.16857 | -5.28197 |
HLA-B14:02 | 3BVN | 3079 | GRGFSRGPLPTSAG | -4.21097 | -5.24627 |
HLA-B52:01 | 3W39 | 3079 | GRGFSRGPLPTSAG | -4.32839 | -4.44179 |
HLA-B52:01 | 3W39 | 3079 | GRGFSRGPLPTSAG | -4.10962 | -5.14492 |
HLA-A24:02 | 5HGA | 3079 | GRGFSRGPLPTSAG | -6.03661 | -6.15001 |
HLA-A24:02 | 5HGA | 3079 | GRGFSRGPLPTSAG | -5.99594 | -7.03124 |
HLA-B44:05 | 3DX8 | 3079 | GRGFSRGPLPTSAG | -6.27779 | -6.39119 |
HLA-B44:05 | 3DX8 | 3079 | GRGFSRGPLPTSAG | -4.76488 | -5.80018 |
Top |
Vaccine Design for the FusionNeoAntigens of CIRBP-PKNOX1 |
![]() |
Fusion gene | Hchr | Hbp | Tchr | Tbp | Start in +/-13AA | End in +/-13AA | FusionNeoAntigen peptide sequence | FusionNeoAntigen RNA sequence |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 10 | 19 | SRGPLPTSA | TCTCTAGAGGGCCCCTGCCCACATCAG |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 10 | 21 | SRGPLPTSAGW | TCTCTAGAGGGCCCCTGCCCACATCAGCGGGCT |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 11 | 21 | RGPLPTSAGW | CTAGAGGGCCCCTGCCCACATCAGCGGGCT |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 12 | 21 | GPLPTSAGW | GAGGGCCCCTGCCCACATCAGCGGGCT |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 12 | 23 | GPLPTSAGWSW | GAGGGCCCCTGCCCACATCAGCGGGCTGGTCTT |
CIRBP-PKNOX1 | chr19 | 1271411 | chr21 | 44450156 | 9 | 19 | FSRGPLPTSA | GGTTCTCTAGAGGGCCCCTGCCCACATCAG |
![]() |
Fusion gene | Hchr | Hbp | Tchr | Tbp | Start in +/-13AA | End in +/-13AA | FusionNeoAntigen peptide | FusionNEoAntigen RNA sequence |
Top |
Information of the samples that have these potential fusion neoantigens of CIRBP-PKNOX1 |
![]() |
Cancer type | Fusion gene | Hchr | Hbp | Henst | Tchr | Tbp | Tenst | Sample |
N/A | CIRBP-PKNOX1 | chr19 | 1271411 | ENST00000320936 | chr21 | 44450156 | ENST00000432907 | DA500684 |
Top |
Potential target of CAR-T therapy development for CIRBP-PKNOX1 |
![]() |
![]() * Minus value of BPloci means that the break point is located before the CDS. |
- In-frame and retained 'Transmembrane'. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
![]() * We used DeepLoc 1.0. The order of the X-axis of the barplot is as follows: Entry_ID, Localization, Type, Nucleus, Cytoplasm, Extracellular, Mitochondrion, Cell_membrane, Endoplasmic_reticulum, Plastid, Golgi.apparatus, Lysosome.Vacuole, Peroxisome. Y-axis is the output score of DeepLoc. Clicking the image will open a new tab with a large image. |
Hgene | Hchr | Hbp | Henst | Tgene | Tchr | Tbp | Tenst | DeepLoc result |
Top |
Related Drugs to CIRBP-PKNOX1 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Drug | Source | PMID |
Top |
Related Diseases to CIRBP-PKNOX1 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Disease | Source | PMID |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |