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Center for Computational Systems Medicine
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Fusion Gene and Fusion Protein Summary

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Fusion Amino Acid Sequences (multiple BPs and multiple gene isoforms)

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Fusion Protein Breakpoint Sequences - (for the Screening of the FusionNeoAntigens)

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Potential FusionNeoAntigens in HLA I - (netMHCpan v4.1 + deepHLApan v1.1)

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Potential FusionNeoAntigens in HLA II - (netMHCIIpan v4.1)

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Fusion Breakpoint 14 AA Peptide Structure - (RoseTTAFold)

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Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D - (Glide)

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Vaccine Design for the FusionNeoAntigens (RNA/protein sequences)

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Potential target of CAR-T therapy development

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Information on the samples that have these potential fusion neoantigens

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Fusion Protein Targeting Drugs - (Manual Curation)

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Fusion Protein Related diseases - (Manual Curation)

Fusion Protein:CREBBP-TCEB2

Fusion Gene and Fusion Protein Summary

check button Fusion gene summary
Fusion partner gene informationFusion gene name: CREBBP-TCEB2
FusionPDB ID: 19385
FusionGDB2.0 ID: 19385
HgeneTgene
Gene symbol

CREBBP

TCEB2

Gene ID

1387

6923

Gene nameCREB binding proteinelongin B
SynonymsCBP|KAT3A|MKHK1|RSTS|RSTS1SIII|TCEB2
Cytomap

16p13.3

16p13.3

Type of geneprotein-codingprotein-coding
DescriptionCREB-binding proteinhistone lysine acetyltransferase CREBBPprotein-lysine acetyltransferase CREBBPelongin-BRNA polymerase II transcription factor SIII p18 subunitRNA polymerase II transcription factor SIII subunit BSIII p18elongin 18 kDa subunitelongin, 18-kD subunitepididymis secretory sperm binding proteintranscription elongation factor B (SI
Modification date2020032920200313
UniProtAcc

Q92793

Main function of 5'-partner protein: FUNCTION: Acetylates histones, giving a specific tag for transcriptional activation (PubMed:24616510). Also acetylates non-histone proteins, like DDX21, FBL, IRF2, MAFG, NCOA3, POLR1E/PAF53 and FOXO1 (PubMed:10490106, PubMed:11154691, PubMed:12738767, PubMed:12929931, PubMed:9707565, PubMed:24207024, PubMed:28790157, PubMed:30540930). Binds specifically to phosphorylated CREB and enhances its transcriptional activity toward cAMP-responsive genes. Acts as a coactivator of ALX1. Acts as a circadian transcriptional coactivator which enhances the activity of the circadian transcriptional activators: NPAS2-ARNTL/BMAL1 and CLOCK-ARNTL/BMAL1 heterodimers (PubMed:14645221). Acetylates PCNA; acetylation promotes removal of chromatin-bound PCNA and its degradation during nucleotide excision repair (NER) (PubMed:24939902). Acetylates POLR1E/PAF53, leading to decreased association of RNA polymerase I with the rDNA promoter region and coding region (PubMed:24207024). Acetylates DDX21, thereby inhibiting DDX21 helicase activity (PubMed:28790157). Acetylates FBL, preventing methylation of 'Gln-105' of histone H2A (H2AQ104me) (PubMed:30540930). Functions as a transcriptional coactivator for SMAD4 in the TGF-beta signaling pathway (PubMed:25514493). {ECO:0000269|PubMed:10490106, ECO:0000269|PubMed:11154691, ECO:0000269|PubMed:12738767, ECO:0000269|PubMed:12929931, ECO:0000269|PubMed:14645221, ECO:0000269|PubMed:24207024, ECO:0000269|PubMed:24616510, ECO:0000269|PubMed:24939902, ECO:0000269|PubMed:25514493, ECO:0000269|PubMed:28790157, ECO:0000269|PubMed:30540930, ECO:0000269|PubMed:9707565}.
.
Ensembl transtripts involved in fusion geneENST idsENST00000262367, ENST00000382070, 
ENST00000409477, ENST00000572954, 
ENST00000262306, ENST00000409906, 
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)* DoF score43 X 38 X 17=277785 X 4 X 5=100
# samples 617
** MAII scorelog2(61/27778*10)=-5.50898967694577
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(7/100*10)=-0.514573172829758
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Fusion gene context

PubMed: CREBBP [Title/Abstract] AND TCEB2 [Title/Abstract] AND fusion [Title/Abstract]

Fusion neoantigen context

PubMed: CREBBP [Title/Abstract] AND TCEB2 [Title/Abstract] AND neoantigen [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)CREBBP(3929832)-TCEB2(2827128), # samples:1
CREBBP(3929833)-TCEB2(2827128), # samples:1
CREBBP(3929832)-TCEB2(2827127), # samples:1
Anticipated loss of major functional domain due to fusion event.CREBBP-TCEB2 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
CREBBP-TCEB2 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
CREBBP-TCEB2 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
CREBBP-TCEB2 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneCREBBP

GO:0000122

negative regulation of transcription by RNA polymerase II

21539536

HgeneCREBBP

GO:0006355

regulation of transcription, DNA-templated

12169688

HgeneCREBBP

GO:0006473

protein acetylation

15273251|24207024|24939902|28790157|30540930

HgeneCREBBP

GO:0016573

histone acetylation

11742995

HgeneCREBBP

GO:0018076

N-terminal peptidyl-lysine acetylation

12435739

HgeneCREBBP

GO:0034644

cellular response to UV

24939902

HgeneCREBBP

GO:0045893

positive regulation of transcription, DNA-templated

11742995

HgeneCREBBP

GO:1990258

histone glutamine methylation

30540930



check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr16:3929832/chr16:2827128)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonRetention analysis results of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features, are available here.

check buttonFusion gene breakpoints across CREBBP (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across TCEB2 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


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Fusion Amino Acid Sequences


check buttonFusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000262367CREBBPchr163929832-ENST00000262306TCEB2chr162827128-14368957351245
ENST00000262367CREBBPchr163929832-ENST00000409906TCEB2chr162827128-18258957351245
ENST00000382070CREBBPchr163929832-ENST00000262306TCEB2chr162827128-830289208771187
ENST00000382070CREBBPchr163929832-ENST00000409906TCEB2chr162827128-1219289798253181
ENST00000262367CREBBPchr163929833-ENST00000262306TCEB2chr162827128-14368957351245
ENST00000262367CREBBPchr163929833-ENST00000409906TCEB2chr162827128-18258957351245
ENST00000382070CREBBPchr163929833-ENST00000262306TCEB2chr162827128-830289208771187
ENST00000382070CREBBPchr163929833-ENST00000409906TCEB2chr162827128-1219289798253181
ENST00000262367CREBBPchr163929832-ENST00000262306TCEB2chr162827127-14368957351245
ENST00000262367CREBBPchr163929832-ENST00000409906TCEB2chr162827127-18258957351245
ENST00000382070CREBBPchr163929832-ENST00000262306TCEB2chr162827127-830289208771187
ENST00000382070CREBBPchr163929832-ENST00000409906TCEB2chr162827127-1219289798253181

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000262367ENST00000262306CREBBPchr163929832-TCEB2chr162827128-0.0917551140.9082449
ENST00000262367ENST00000409906CREBBPchr163929832-TCEB2chr162827128-0.0592846420.9407153
ENST00000382070ENST00000262306CREBBPchr163929832-TCEB2chr162827128-0.104474870.89552516
ENST00000382070ENST00000409906CREBBPchr163929832-TCEB2chr162827128-0.0356881580.9643119
ENST00000262367ENST00000262306CREBBPchr163929833-TCEB2chr162827128-0.0917551140.9082449
ENST00000262367ENST00000409906CREBBPchr163929833-TCEB2chr162827128-0.0592846420.9407153
ENST00000382070ENST00000262306CREBBPchr163929833-TCEB2chr162827128-0.104474870.89552516
ENST00000382070ENST00000409906CREBBPchr163929833-TCEB2chr162827128-0.0356881580.9643119
ENST00000262367ENST00000262306CREBBPchr163929832-TCEB2chr162827127-0.0917551140.9082449
ENST00000262367ENST00000409906CREBBPchr163929832-TCEB2chr162827127-0.0592846420.9407153
ENST00000382070ENST00000262306CREBBPchr163929832-TCEB2chr162827127-0.104474870.89552516
ENST00000382070ENST00000409906CREBBPchr163929832-TCEB2chr162827127-0.0356881580.9643119

check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.

Get the fusion protein sequences from here.

Fusion protein sequence information is available in the fasta format.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

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Fusion Protein Breakpoint Sequences for CREBBP-TCEB2

check button +/-13 AA sequence from the breakpoints of the fusion protein sequences.
HgeneHchrHbpTgeneTchrTbpLength(fusion protein)BP in fusion proteinPeptide
CREBBPchr163929832TCEB2chr16282712728926PNSARPVSRRMTAQDVFLMIRRHKTT
CREBBPchr163929832TCEB2chr16282712789536GAGRVGEAAAKSQPQQQRPAALTARP
CREBBPchr163929832TCEB2chr16282712789548QPQQQRPAALTARPRPPPPPPAAAPS
CREBBPchr163929832TCEB2chr16282712789549PQQQRPAALTARPRPPPPPPAAAPSS
CREBBPchr163929832TCEB2chr16282712828926PNSARPVSRRMTAQDVFLMIRRHKTT
CREBBPchr163929832TCEB2chr16282712889536GAGRVGEAAAKSQPQQQRPAALTARP
CREBBPchr163929832TCEB2chr16282712889548QPQQQRPAALTARPRPPPPPPAAAPS
CREBBPchr163929832TCEB2chr16282712889549PQQQRPAALTARPRPPPPPPAAAPSS
CREBBPchr163929833TCEB2chr16282712828926PNSARPVSRRMTAQDVFLMIRRHKTT
CREBBPchr163929833TCEB2chr16282712889536GAGRVGEAAAKSQPQQQRPAALTARP
CREBBPchr163929833TCEB2chr16282712889548QPQQQRPAALTARPRPPPPPPAAAPS
CREBBPchr163929833TCEB2chr16282712889549PQQQRPAALTARPRPPPPPPAAAPSS

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Potential FusionNeoAntigen Information of CREBBP-TCEB2 in HLA I

check button Multiple sequence alignments of the potential FusionNeoAntigens per fusion breakpoints. If the MSA is empty, then it means that there were predicted fusion neoantigens in this fusion breakpoint, but those predicted fusion neoantigens were not across the breakpoint, which is not fusion-specific.
CREBBP-TCEB2_3929832_2827127.msa

check button Potential FusionNeoAntigen Information
* We used NetMHCpan v4.1 (%rank<0.5) and deepHLApan v1.1 (immunogenic score>0.5)
Fusion geneHchrHbpTgeneTchrTbpHLA IFusionNeoAntigen peptideBinding scoreImmunogenic scoreNeoantigen start (at BP 13)Neoantigen end (at BP 13)
CREBBP-TCEB2chr163929832chr162827127289HLA-B13:02AQDVFLMI0.99620.65471220
CREBBP-TCEB2chr163929832chr162827127289HLA-B52:01AQDVFLMI0.95180.91761220
CREBBP-TCEB2chr163929832chr162827127289HLA-B27:05RRMTAQDVF0.99960.5818817
CREBBP-TCEB2chr163929832chr162827127289HLA-B27:04RRMTAQDVF0.99950.5588817
CREBBP-TCEB2chr163929832chr162827127289HLA-B15:17MTAQDVFLM0.98940.90291019
CREBBP-TCEB2chr163929832chr162827127289HLA-B58:01MTAQDVFLM0.97980.9471019
CREBBP-TCEB2chr163929832chr162827127289HLA-B15:16MTAQDVFLM0.97880.82821019
CREBBP-TCEB2chr163929832chr162827127289HLA-B52:01TAQDVFLMI0.97280.96531120
CREBBP-TCEB2chr163929832chr162827127289HLA-B57:03MTAQDVFLM0.87150.97621019
CREBBP-TCEB2chr163929832chr162827127289HLA-B15:03RRMTAQDVF0.4150.6856817
CREBBP-TCEB2chr163929832chr162827127289HLA-B38:01RRMTAQDVF0.28710.813817
CREBBP-TCEB2chr163929832chr162827127289HLA-B38:02RRMTAQDVF0.26230.8197817
CREBBP-TCEB2chr163929832chr162827127289HLA-B15:18RRMTAQDVF0.24440.629817
CREBBP-TCEB2chr163929832chr162827127289HLA-B27:05RRMTAQDVFL0.99990.5973818
CREBBP-TCEB2chr163929832chr162827127289HLA-B27:04RRMTAQDVFL0.99980.6321818
CREBBP-TCEB2chr163929832chr162827127289HLA-B27:04RRMTAQDVFLM10.5888819
CREBBP-TCEB2chr163929832chr162827127289HLA-B27:05RRMTAQDVFLM10.5184819
CREBBP-TCEB2chr163929832chr162827127289HLA-B27:14RRMTAQDVF0.99960.5251817
CREBBP-TCEB2chr163929832chr162827127289HLA-C03:07TAQDVFLMI0.99930.96731120
CREBBP-TCEB2chr163929832chr162827127289HLA-C15:06TAQDVFLMI0.99850.86581120
CREBBP-TCEB2chr163929832chr162827127289HLA-C03:19TAQDVFLMI0.99660.98931120
CREBBP-TCEB2chr163929832chr162827127289HLA-C04:06TAQDVFLMI0.9950.72341120
CREBBP-TCEB2chr163929832chr162827127289HLA-C07:95RRMTAQDVF0.99270.6227817
CREBBP-TCEB2chr163929832chr162827127289HLA-B27:03RRMTAQDVF0.99130.6187817
CREBBP-TCEB2chr163929832chr162827127289HLA-C07:05RRMTAQDVF0.9880.9401817
CREBBP-TCEB2chr163929832chr162827127289HLA-B51:07TAQDVFLMI0.97390.86581120
CREBBP-TCEB2chr163929832chr162827127289HLA-C08:04TAQDVFLMI0.96480.96751120
CREBBP-TCEB2chr163929832chr162827127289HLA-C08:13TAQDVFLMI0.96480.96751120
CREBBP-TCEB2chr163929832chr162827127289HLA-C07:27RRMTAQDVF0.96190.9337817
CREBBP-TCEB2chr163929832chr162827127289HLA-C12:04TAQDVFLMI0.91850.99171120
CREBBP-TCEB2chr163929832chr162827127289HLA-C06:03TAQDVFLMI0.91490.99171120
CREBBP-TCEB2chr163929832chr162827127289HLA-C02:06TAQDVFLMI0.87450.90361120
CREBBP-TCEB2chr163929832chr162827127289HLA-C07:46RRMTAQDVF0.87340.7985817
CREBBP-TCEB2chr163929832chr162827127289HLA-C07:80RRMTAQDVF0.86740.9157817
CREBBP-TCEB2chr163929832chr162827127289HLA-C07:67RRMTAQDVF0.86740.9157817
CREBBP-TCEB2chr163929832chr162827127289HLA-C07:19RRMTAQDVF0.8650.6444817
CREBBP-TCEB2chr163929832chr162827127289HLA-C12:12TAQDVFLMI0.8340.93531120
CREBBP-TCEB2chr163929832chr162827127289HLA-C08:03TAQDVFLMI0.82510.98341120
CREBBP-TCEB2chr163929832chr162827127289HLA-C07:10RRMTAQDVF0.81330.9432817
CREBBP-TCEB2chr163929832chr162827127289HLA-B39:12RRMTAQDVF0.54250.7686817
CREBBP-TCEB2chr163929832chr162827127289HLA-C12:16RRMTAQDVF0.06430.9599817
CREBBP-TCEB2chr163929832chr162827127289HLA-B27:14RRMTAQDVFL0.99990.5539818
CREBBP-TCEB2chr163929832chr162827127289HLA-B27:03RRMTAQDVFL0.99730.6337818
CREBBP-TCEB2chr163929832chr162827127289HLA-B27:03RRMTAQDVFLM0.99960.5554819
CREBBP-TCEB2chr163929832chr162827127289HLA-B27:10RRMTAQDVF0.99950.729817
CREBBP-TCEB2chr163929832chr162827127289HLA-B27:06RRMTAQDVF0.99930.5204817
CREBBP-TCEB2chr163929832chr162827127289HLA-C15:05TAQDVFLMI0.99850.87921120
CREBBP-TCEB2chr163929832chr162827127289HLA-C15:02TAQDVFLMI0.99850.82691120
CREBBP-TCEB2chr163929832chr162827127289HLA-B27:09RRMTAQDVF0.99630.5729817
CREBBP-TCEB2chr163929832chr162827127289HLA-C07:01RRMTAQDVF0.99480.5563817
CREBBP-TCEB2chr163929832chr162827127289HLA-B57:04MTAQDVFLM0.98680.75491019
CREBBP-TCEB2chr163929832chr162827127289HLA-A68:02MTAQDVFLM0.97480.58551019
CREBBP-TCEB2chr163929832chr162827127289HLA-B57:02MTAQDVFLM0.97260.83331019
CREBBP-TCEB2chr163929832chr162827127289HLA-A25:01MTAQDVFLM0.97070.71481019
CREBBP-TCEB2chr163929832chr162827127289HLA-A69:01MTAQDVFLM0.9550.5551019
CREBBP-TCEB2chr163929832chr162827127289HLA-A69:01TAQDVFLMI0.94190.52561120
CREBBP-TCEB2chr163929832chr162827127289HLA-C16:02TAQDVFLMI0.92970.98441120
CREBBP-TCEB2chr163929832chr162827127289HLA-C16:04TAQDVFLMI0.90610.97251120
CREBBP-TCEB2chr163929832chr162827127289HLA-C17:01TAQDVFLMI0.89990.89571120
CREBBP-TCEB2chr163929832chr162827127289HLA-C07:02RRMTAQDVF0.86740.9157817
CREBBP-TCEB2chr163929832chr162827127289HLA-C12:03TAQDVFLMI0.85370.98011120
CREBBP-TCEB2chr163929832chr162827127289HLA-C08:01TAQDVFLMI0.82510.98341120
CREBBP-TCEB2chr163929832chr162827127289HLA-C07:22RRMTAQDVF0.79720.6789817
CREBBP-TCEB2chr163929832chr162827127289HLA-B39:31RRMTAQDVF0.46270.7673817
CREBBP-TCEB2chr163929832chr162827127289HLA-B38:05RRMTAQDVF0.28710.813817
CREBBP-TCEB2chr163929832chr162827127289HLA-B15:68RRMTAQDVF0.13050.5872817
CREBBP-TCEB2chr163929832chr162827127289HLA-B15:54RRMTAQDVF0.06850.771817
CREBBP-TCEB2chr163929832chr162827127289HLA-B27:10RRMTAQDVFL0.99980.7862818
CREBBP-TCEB2chr163929832chr162827127289HLA-B27:06RRMTAQDVFL0.99970.6211818
CREBBP-TCEB2chr163929832chr162827127289HLA-B27:09RRMTAQDVFL0.99940.5824818
CREBBP-TCEB2chr163929832chr162827127289HLA-A68:02MTAQDVFLMI0.9950.54221020
CREBBP-TCEB2chr163929832chr162827127289HLA-B27:06RRMTAQDVFLM10.5924819
CREBBP-TCEB2chr163929832chr162827127289HLA-B27:10RRMTAQDVFLM10.7447819
CREBBP-TCEB2chr163929832chr162827127289HLA-B27:09RRMTAQDVFLM0.99990.5192819

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Potential FusionNeoAntigen Information of CREBBP-TCEB2 in HLA II

check button Multiple sequence alignments of the potential FusionNeoAntigens per fusion breakpoints. If the MSA is empty, then it means that there were predicted fusion neoantigens in this fusion breakpoint, but those predicted fusion neoantigens were not across the breakpoint, which is not fusion-specific.
CREBBP-TCEB2_3929832_2827127.msa

check button Potential FusionNeoAntigen Information
* We used NetMHCIIpan v4.1 (%rank<0.5).
Fusion geneHchrHbpTgeneTchrTbpHLA IIFusionNeoAntigen peptideNeoantigen start (at BP 13)Neoantigen end (at BP 13)
CREBBP-TCEB2chr163929832chr162827127289DRB1-1101TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1105TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1108TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1109TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1110TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1111TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1112TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1115TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1119TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1124TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1127TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1128TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1129TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1131TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1132TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1133TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1139TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1145TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1149TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1151TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1161TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1162TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1164TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1166TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1172TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1174TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1175TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1180TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1181TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1187TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1190TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1191TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1193TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1194TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1195TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1196TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1305TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1314TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1326TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1347TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1350TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1356TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1362TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1363TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1382TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1403TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1427TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1440TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1467TAQDVFLMIRRHKTT1126
CREBBP-TCEB2chr163929832chr162827127289DRB1-1477TAQDVFLMIRRHKTT1126

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Fusion breakpoint peptide structures of CREBBP-TCEB2

check button3D structures of the fusion breakpoint peptide of 14AA sequence that have potential fusion neoantigens
* The minimum length of the amino acid sequence in RoseTTAFold is 14AA. Here, we predicted the 14AA fusion protein breakpoint sequence not the fusion neoantigen peptide, which is shorter than 14 AA.
File nameBPseqHgeneTgeneHchrHbpTchrTbpAAlen
10287VSRRMTAQDVFLMICREBBPTCEB2chr163929832chr162827127289

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Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D of CREBBP-TCEB2

check buttonVirtual screening between 25 HLAs (from PDB) and FusionNeoAntigens
* We used Glide to predict the interaction between HLAs and neoantigens.
HLA allelePDB IDFile nameBPseqDocking scoreGlide score
HLA-B14:023BVN10287VSRRMTAQDVFLMI-7.9962-8.1096
HLA-B14:023BVN10287VSRRMTAQDVFLMI-5.70842-6.74372
HLA-B52:013W3910287VSRRMTAQDVFLMI-6.83737-6.95077
HLA-B52:013W3910287VSRRMTAQDVFLMI-4.4836-5.5189
HLA-A11:014UQ210287VSRRMTAQDVFLMI-10.0067-10.1201
HLA-A11:014UQ210287VSRRMTAQDVFLMI-9.03915-10.0745
HLA-A24:025HGA10287VSRRMTAQDVFLMI-6.56204-6.67544
HLA-A24:025HGA10287VSRRMTAQDVFLMI-5.42271-6.45801
HLA-B44:053DX810287VSRRMTAQDVFLMI-7.85648-8.89178
HLA-B44:053DX810287VSRRMTAQDVFLMI-5.3978-5.5112
HLA-B35:011A1N10287VSRRMTAQDVFLMI-6.27422-6.38762
HLA-B35:011A1N10287VSRRMTAQDVFLMI-5.27424-6.30954
HLA-A02:016TDR10287VSRRMTAQDVFLMI-3.37154-4.40684

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Vaccine Design for the FusionNeoAntigens of CREBBP-TCEB2

check button mRNA and peptide sequences of FusionNeoAntigens that have potential interaction with HLA-Is.
Fusion geneHchrHbpTchrTbpStart in +/-13AAEnd in +/-13AAFusionNeoAntigen peptide sequenceFusionNeoAntigen RNA sequence
CREBBP-TCEB2chr163929832chr1628271271019MTAQDVFLMACAGCACAGGACGTGTTCCTCATGATC
CREBBP-TCEB2chr163929832chr1628271271020MTAQDVFLMIACAGCACAGGACGTGTTCCTCATGATCCGG
CREBBP-TCEB2chr163929832chr1628271271120TAQDVFLMIGCACAGGACGTGTTCCTCATGATCCGG
CREBBP-TCEB2chr163929832chr1628271271220AQDVFLMICAGGACGTGTTCCTCATGATCCGG
CREBBP-TCEB2chr163929832chr162827127817RRMTAQDVFCGAATGACAGCACAGGACGTGTTCCTC
CREBBP-TCEB2chr163929832chr162827127818RRMTAQDVFLCGAATGACAGCACAGGACGTGTTCCTCATG
CREBBP-TCEB2chr163929832chr162827127819RRMTAQDVFLMCGAATGACAGCACAGGACGTGTTCCTCATGATC

check button mRNA and peptide sequences of FusionNeoAntigens that have potential interaction with HLA-IIs.
Fusion geneHchrHbpTchrTbpStart in +/-13AAEnd in +/-13AAFusionNeoAntigen peptideFusionNEoAntigen RNA sequence
CREBBP-TCEB2chr163929832chr1628271271126TAQDVFLMIRRHKTTGCACAGGACGTGTTCCTCATGATCCGGCGCCACAAGACCACCATC

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Information of the samples that have these potential fusion neoantigens of CREBBP-TCEB2

check button These samples were reported as having these fusion breakpoints. For individual breakpoints, we checked the open reading frames considering multiple gene isoforms and chose the in-frame fusion genes only. Then, we made fusion protein sequences and predicted the fusion neoantigens. These fusion-positive samples may have these potential fusion neoantigens.
Cancer typeFusion geneHchrHbpHenstTchrTbpTenstSample
LUSCCREBBP-TCEB2chr163929832ENST00000382070chr162827127ENST00000262306TCGA-33-4587-01A

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Potential target of CAR-T therapy development for CREBBP-TCEB2

check button Predicted 3D structure. We used RoseTTAFold.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, to provide the retention of the transmembrane domain, we only show the protein feature retention information of those transmembrane features


* Minus value of BPloci means that the break point is located before the CDS.
- In-frame and retained 'Transmembrane'.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

check button Subcellular localization prediction of the transmembrane domain retained fusion proteins
* We used DeepLoc 1.0. The order of the X-axis of the barplot is as follows: Entry_ID, Localization, Type, Nucleus, Cytoplasm, Extracellular, Mitochondrion, Cell_membrane, Endoplasmic_reticulum, Plastid, Golgi.apparatus, Lysosome.Vacuole, Peroxisome. Y-axis is the output score of DeepLoc. Clicking the image will open a new tab with a large image.
HgeneHchrHbpHenstTgeneTchrTbpTenstDeepLoc result

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Related Drugs to CREBBP-TCEB2

check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

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Related Diseases to CREBBP-TCEB2

check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneCREBBPC4551859RUBINSTEIN-TAYBI SYNDROME 112CLINGEN;GENOMICS_ENGLAND;UNIPROT
HgeneCREBBPC0035934Rubinstein-Taybi Syndrome6CLINGEN;CTD_human
HgeneCREBBPC0033578Prostatic Neoplasms2CTD_human
HgeneCREBBPC0376358Malignant neoplasm of prostate2CTD_human
HgeneCREBBPC4511003Acute myeloid leukemia with t(8;16)(p11;p13) translocation2ORPHANET
HgeneCREBBPC0005684Malignant neoplasm of urinary bladder1CTD_human
HgeneCREBBPC0005695Bladder Neoplasm1CTD_human
HgeneCREBBPC0007137Squamous cell carcinoma1CTD_human
HgeneCREBBPC0007138Carcinoma, Transitional Cell1CTD_human
HgeneCREBBPC0010606Adenoid Cystic Carcinoma1CTD_human
HgeneCREBBPC0011573Endogenous depression1PSYGENET
HgeneCREBBPC0024301Lymphoma, Follicular1CTD_human
HgeneCREBBPC0036920Sezary Syndrome1CTD_human
HgeneCREBBPC0079745Lymphoma, Large-Cell, Follicular1CTD_human
HgeneCREBBPC0079758Lymphoma, Mixed-Cell, Follicular1CTD_human
HgeneCREBBPC0079765Lymphoma, Small Cleaved-Cell, Follicular1CTD_human
HgeneCREBBPC0149925Small cell carcinoma of lung1CTD_human
HgeneCREBBPC0152013Adenocarcinoma of lung (disorder)1CTD_human
HgeneCREBBPC0279626Squamous cell carcinoma of esophagus1CTD_human
HgeneCREBBPC1862939AMYOTROPHIC LATERAL SCLEROSIS 11CTD_human
HgeneCREBBPC1862941Amyotrophic Lateral Sclerosis, Sporadic1CTD_human
HgeneCREBBPC1956130Lymphoma, Follicular, Grade 11CTD_human
HgeneCREBBPC1956131Lymphoma, Follicular, Grade 31CTD_human
HgeneCREBBPC1956132Lymphoma, Follicular, Grade 21CTD_human
HgeneCREBBPC4551993Amyotrophic Lateral Sclerosis, Familial1CTD_human