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Fusion Protein:NRBF2-CYP26A1 |
Fusion Gene and Fusion Protein Summary |
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Fusion partner gene information | Fusion gene name: NRBF2-CYP26A1 | FusionPDB ID: 60196 | FusionGDB2.0 ID: 60196 | Hgene | Tgene | Gene symbol | NRBF2 | CYP26A1 | Gene ID | 29982 | 1592 |
Gene name | nuclear receptor binding factor 2 | cytochrome P450 family 26 subfamily A member 1 | |
Synonyms | COPR|COPR1|COPR2|NRBF-2 | CP26|CYP26|P450RAI|P450RAI1 | |
Cytomap | 10q21.3 | 10q23.33 | |
Type of gene | protein-coding | protein-coding | |
Description | nuclear receptor-binding factor 2comodulator of PPAR and RXR 1comodulator of PPAR and RXR 2 | cytochrome P450 26A1P450, retinoic acid-inactivating, 1cytochrome P450 retinoic acid-inactivating 1cytochrome P450, family 26, subfamily A, polypeptide 1cytochrome P450, subfamily XXVIA, polypeptide 1cytochrome P450RAIhP450RAIretinoic acid 4-hydrox | |
Modification date | 20200313 | 20200329 | |
UniProtAcc | Q96F24 Main function of 5'-partner protein: FUNCTION: May modulate transcriptional activation by target nuclear receptors. Can act as transcriptional activator (in vitro). {ECO:0000269|PubMed:15610520}.; FUNCTION: Involved in starvation-induced autophagy probably by its association with PI3K complex I (PI3KC3-C1). However, effects has been described variably. Involved in the induction of starvation-induced autophagy (PubMed:24785657). Stabilzes PI3KC3-C1 assembly and enhances ATG14-linked lipid kinase activity of PIK3C3 (By similarity). Proposed to negatively regulate basal and starvation-induced autophagy and to inhibit PIK3C3 activity by modulating interactions in PI3KC3-C1 (PubMed:25086043). May be involved in autophagosome biogenesis (PubMed:25086043). May play a role in neural progenitor cell survival during differentiation (By similarity). {ECO:0000250|UniProtKB:Q8VCQ3, ECO:0000269|PubMed:24785657, ECO:0000269|PubMed:25086043}. | O43174 Main function of 5'-partner protein: FUNCTION: A cytochrome P450 monooxygenase involved in the metabolism of all-trans retinoic acid (atRA), a signaling molecule that binds to retinoic acid receptors and regulates gene transcription. Mechanistically, uses molecular oxygen inserting one oxygen atom into a substrate, and reducing the second into a water molecule, with two electrons provided by NADPH via cytochrome P450 reductase (CPR; NADPH-ferrihemoprotein reductase). Catalyzes the hydroxylation of carbon hydrogen bonds of atRA primarily at C-4 and C-18. Has no activity toward 9-cis and 13-cis retinoic acid stereoisomers (PubMed:22020119, PubMed:9228017, PubMed:9716180). May play a role in the oxidative metabolism of xenobiotics such as tazarotenic acid (PubMed:26937021). {ECO:0000269|PubMed:22020119, ECO:0000269|PubMed:26937021, ECO:0000269|PubMed:9228017, ECO:0000269|PubMed:9716180}. | |
Ensembl transtripts involved in fusion gene | ENST ids | ENST00000435510, ENST00000277746, | ENST00000224356, ENST00000371531, ENST00000394139, |
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 9 X 6 X 5=270 | 3 X 3 X 3=27 |
# samples | 10 | 4 | |
** MAII score | log2(10/270*10)=-1.43295940727611 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(4/27*10)=0.567040592723894 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Fusion gene context | PubMed: NRBF2 [Title/Abstract] AND CYP26A1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Fusion neoantigen context | PubMed: NRBF2 [Title/Abstract] AND CYP26A1 [Title/Abstract] AND neoantigen [Title/Abstract] | ||
Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | NRBF2(64893260)-CYP26A1(94835583), # samples:3 | ||
Anticipated loss of major functional domain due to fusion event. | NRBF2-CYP26A1 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. NRBF2-CYP26A1 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. NRBF2-CYP26A1 seems lost the major protein functional domain in Tgene partner, which is a IUPHAR drug target due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | CYP26A1 | GO:0006805 | xenobiotic metabolic process | 26937021 |
Tgene | CYP26A1 | GO:0034653 | retinoic acid catabolic process | 10823918 |
Tgene | CYP26A1 | GO:0042573 | retinoic acid metabolic process | 9716180|22020119 |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr10:64893260/chr10:94835583) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Fusion Amino Acid Sequences |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000277746 | NRBF2 | chr10 | 64893260 | + | ENST00000371531 | CYP26A1 | chr10 | 94835583 | + | 1421 | 211 | 64 | 840 | 258 |
ENST00000277746 | NRBF2 | chr10 | 64893260 | + | ENST00000224356 | CYP26A1 | chr10 | 94835583 | + | 1427 | 211 | 64 | 840 | 258 |
ENST00000277746 | NRBF2 | chr10 | 64893260 | + | ENST00000394139 | CYP26A1 | chr10 | 94835583 | + | 1427 | 211 | 64 | 840 | 258 |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000277746 | ENST00000371531 | NRBF2 | chr10 | 64893260 | + | CYP26A1 | chr10 | 94835583 | + | 0.000805217 | 0.9991948 |
ENST00000277746 | ENST00000224356 | NRBF2 | chr10 | 64893260 | + | CYP26A1 | chr10 | 94835583 | + | 0.000818856 | 0.9991811 |
ENST00000277746 | ENST00000394139 | NRBF2 | chr10 | 64893260 | + | CYP26A1 | chr10 | 94835583 | + | 0.000818856 | 0.9991811 |
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Get the fusion protein sequences from here. |
Fusion protein sequence information is available in the fasta format. >FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP |
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Fusion Protein Breakpoint Sequences for NRBF2-CYP26A1 |
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Hgene | Hchr | Hbp | Tgene | Tchr | Tbp | Length(fusion protein) | BP in fusion protein | Peptide |
NRBF2 | chr10 | 64893260 | CYP26A1 | chr10 | 94835583 | 211 | 49 | PGSMEVMEGPLNLALKQSSTELLFGG |
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Potential FusionNeoAntigen Information of NRBF2-CYP26A1 in HLA I |
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NRBF2-CYP26A1_64893260_94835583.msa |
![]() * We used NetMHCpan v4.1 (%rank<0.5) and deepHLApan v1.1 (immunogenic score>0.5) |
Fusion gene | Hchr | Hbp | Tgene | Tchr | Tbp | HLA I | FusionNeoAntigen peptide | Binding score | Immunogenic score | Neoantigen start (at BP 13) | Neoantigen end (at BP 13) |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B50:01 | MEGPLNLA | 0.983 | 0.7917 | 6 | 14 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B13:01 | MEGPLNLAL | 0.9972 | 0.8821 | 6 | 15 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B44:03 | MEGPLNLAL | 0.9718 | 0.9456 | 6 | 15 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B47:01 | MEGPLNLAL | 0.9637 | 0.5225 | 6 | 15 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B18:01 | MEGPLNLAL | 0.9512 | 0.8228 | 6 | 15 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B39:13 | MEGPLNLAL | 0.8247 | 0.9693 | 6 | 15 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B39:01 | MEGPLNLAL | 0.8185 | 0.9341 | 6 | 15 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B38:02 | MEGPLNLAL | 0.7978 | 0.9728 | 6 | 15 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B41:01 | MEGPLNLAL | 0.5227 | 0.9639 | 6 | 15 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B40:06 | MEGPLNLAL | 0.9995 | 0.5207 | 6 | 15 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B39:09 | MEGPLNLAL | 0.8391 | 0.7331 | 6 | 15 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B39:08 | MEGPLNLAL | 0.8375 | 0.9048 | 6 | 15 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B39:05 | MEGPLNLAL | 0.8153 | 0.9213 | 6 | 15 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B50:04 | MEGPLNLA | 0.983 | 0.7917 | 6 | 14 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B50:05 | MEGPLNLA | 0.983 | 0.7917 | 6 | 14 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B40:04 | MEGPLNLAL | 0.9995 | 0.6853 | 6 | 15 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B18:04 | MEGPLNLAL | 0.9746 | 0.8378 | 6 | 15 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B44:26 | MEGPLNLAL | 0.9718 | 0.9456 | 6 | 15 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B44:07 | MEGPLNLAL | 0.9718 | 0.9456 | 6 | 15 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B44:13 | MEGPLNLAL | 0.9718 | 0.9456 | 6 | 15 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B18:07 | MEGPLNLAL | 0.9596 | 0.7839 | 6 | 15 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B18:05 | MEGPLNLAL | 0.9512 | 0.8228 | 6 | 15 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B18:08 | MEGPLNLAL | 0.9502 | 0.7723 | 6 | 15 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B18:03 | MEGPLNLAL | 0.9442 | 0.8081 | 6 | 15 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B18:06 | MEGPLNLAL | 0.9438 | 0.8364 | 6 | 15 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B18:11 | MEGPLNLAL | 0.9209 | 0.7817 | 6 | 15 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B39:11 | MEGPLNLAL | 0.8481 | 0.8732 | 6 | 15 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B39:31 | MEGPLNLAL | 0.8294 | 0.9317 | 6 | 15 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B39:02 | MEGPLNLAL | 0.8254 | 0.9705 | 6 | 15 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B48:02 | MEGPLNLAL | 0.7043 | 0.8773 | 6 | 15 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B41:03 | MEGPLNLAL | 0.6665 | 0.7082 | 6 | 15 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B15:09 | MEGPLNLAL | 0.6066 | 0.7151 | 6 | 15 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-A68:02 | EVMEGPLNLA | 0.9957 | 0.7029 | 4 | 14 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-A69:01 | EVMEGPLNLA | 0.9887 | 0.6859 | 4 | 14 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B15:73 | LALKQSSTEL | 0.9355 | 0.9562 | 12 | 22 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-B15:30 | LALKQSSTEL | 0.9211 | 0.9321 | 12 | 22 |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 | HLA-A69:01 | EVMEGPLNLAL | 0.9979 | 0.5785 | 4 | 15 |
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Potential FusionNeoAntigen Information of NRBF2-CYP26A1 in HLA II |
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![]() * We used NetMHCIIpan v4.1 (%rank<0.5). |
Fusion gene | Hchr | Hbp | Tgene | Tchr | Tbp | HLA II | FusionNeoAntigen peptide | Neoantigen start (at BP 13) | Neoantigen end (at BP 13) |
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Fusion breakpoint peptide structures of NRBF2-CYP26A1 |
![]() * The minimum length of the amino acid sequence in RoseTTAFold is 14AA. Here, we predicted the 14AA fusion protein breakpoint sequence not the fusion neoantigen peptide, which is shorter than 14 AA. |
File name | BPseq | Hgene | Tgene | Hchr | Hbp | Tchr | Tbp | AAlen |
5882 | MEGPLNLALKQSST | NRBF2 | CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 211 |
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Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D of NRBF2-CYP26A1 |
![]() * We used Glide to predict the interaction between HLAs and neoantigens. |
HLA allele | PDB ID | File name | BPseq | Docking score | Glide score |
HLA-B14:02 | 3BVN | 5882 | MEGPLNLALKQSST | -7.15543 | -7.26883 |
HLA-B14:02 | 3BVN | 5882 | MEGPLNLALKQSST | -4.77435 | -5.80965 |
HLA-B52:01 | 3W39 | 5882 | MEGPLNLALKQSST | -6.80875 | -6.92215 |
HLA-B52:01 | 3W39 | 5882 | MEGPLNLALKQSST | -4.20386 | -5.23916 |
HLA-A11:01 | 4UQ2 | 5882 | MEGPLNLALKQSST | -7.5194 | -8.5547 |
HLA-A11:01 | 4UQ2 | 5882 | MEGPLNLALKQSST | -6.9601 | -7.0735 |
HLA-A24:02 | 5HGA | 5882 | MEGPLNLALKQSST | -7.52403 | -7.63743 |
HLA-A24:02 | 5HGA | 5882 | MEGPLNLALKQSST | -5.82433 | -6.85963 |
HLA-B27:05 | 6PYJ | 5882 | MEGPLNLALKQSST | -3.28285 | -4.31815 |
HLA-B44:05 | 3DX8 | 5882 | MEGPLNLALKQSST | -5.91172 | -6.94702 |
HLA-B44:05 | 3DX8 | 5882 | MEGPLNLALKQSST | -4.24346 | -4.35686 |
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Vaccine Design for the FusionNeoAntigens of NRBF2-CYP26A1 |
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Fusion gene | Hchr | Hbp | Tchr | Tbp | Start in +/-13AA | End in +/-13AA | FusionNeoAntigen peptide sequence | FusionNeoAntigen RNA sequence |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 12 | 22 | LALKQSSTEL | CTGGCACTAAAGCAATCTTCAACCGAACTC |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 4 | 14 | EVMEGPLNLA | GAAGTAATGGAAGGACCCCTCAACCTGGCA |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 4 | 15 | EVMEGPLNLAL | GAAGTAATGGAAGGACCCCTCAACCTGGCACTA |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 6 | 14 | MEGPLNLA | ATGGAAGGACCCCTCAACCTGGCA |
NRBF2-CYP26A1 | chr10 | 64893260 | chr10 | 94835583 | 6 | 15 | MEGPLNLAL | ATGGAAGGACCCCTCAACCTGGCACTA |
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Fusion gene | Hchr | Hbp | Tchr | Tbp | Start in +/-13AA | End in +/-13AA | FusionNeoAntigen peptide | FusionNEoAntigen RNA sequence |
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Information of the samples that have these potential fusion neoantigens of NRBF2-CYP26A1 |
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Cancer type | Fusion gene | Hchr | Hbp | Henst | Tchr | Tbp | Tenst | Sample |
BRCA | NRBF2-CYP26A1 | chr10 | 64893260 | ENST00000277746 | chr10 | 94835583 | ENST00000224356 | TCGA-E2-A576-01A |
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Potential target of CAR-T therapy development for NRBF2-CYP26A1 |
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![]() * Minus value of BPloci means that the break point is located before the CDS. |
- In-frame and retained 'Transmembrane'. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
![]() * We used DeepLoc 1.0. The order of the X-axis of the barplot is as follows: Entry_ID, Localization, Type, Nucleus, Cytoplasm, Extracellular, Mitochondrion, Cell_membrane, Endoplasmic_reticulum, Plastid, Golgi.apparatus, Lysosome.Vacuole, Peroxisome. Y-axis is the output score of DeepLoc. Clicking the image will open a new tab with a large image. |
Hgene | Hchr | Hbp | Henst | Tgene | Tchr | Tbp | Tenst | DeepLoc result |
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Related Drugs to NRBF2-CYP26A1 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Drug | Source | PMID |
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Related Diseases to NRBF2-CYP26A1 |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Disease | Source | PMID |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |