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Center for Computational Systems Medicine
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Fusion Gene and Fusion Protein Summary

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Fusion Amino Acid Sequences (multiple BPs and multiple gene isoforms)

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Fusion Protein Breakpoint Sequences - (for the Screening of the FusionNeoAntigens)

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Potential FusionNeoAntigens in HLA I - (netMHCpan v4.1 + deepHLApan v1.1)

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Potential FusionNeoAntigens in HLA II - (netMHCIIpan v4.1)

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Fusion Breakpoint 14 AA Peptide Structure - (RoseTTAFold)

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Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D - (Glide)

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Vaccine Design for the FusionNeoAntigens (RNA/protein sequences)

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Potential target of CAR-T therapy development

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Information on the samples that have these potential fusion neoantigens

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Fusion Protein Targeting Drugs - (Manual Curation)

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Fusion Protein Related diseases - (Manual Curation)

Fusion Protein:STAU1-CYP26B1

Fusion Gene and Fusion Protein Summary

check button Fusion gene summary
Fusion partner gene informationFusion gene name: STAU1-CYP26B1
FusionPDB ID: 87300
FusionGDB2.0 ID: 87300
HgeneTgene
Gene symbol

STAU1

CYP26B1

Gene ID

6780

56603

Gene namestaufen double-stranded RNA binding protein 1cytochrome P450 family 26 subfamily B member 1
SynonymsPPP1R150|STAUCYP26A2|P450RAI-2|P450RAI2|RHFCA
Cytomap

20q13.13

2p13.2

Type of geneprotein-codingprotein-coding
Descriptiondouble-stranded RNA-binding protein Staufen homolog 1protein phosphatase 1, regulatory subunit 150staufen, RNA binding protein, homolog 1cytochrome P450 26B1cytochrome P450 family 26 subfamily A member 1cytochrome P450 retinoic acid-inactivating 2cytochrome P450 retinoid metabolizing proteincytochrome P450, family 26, subfamily B, polypeptide 1cytochrome P450, subfamily XXVIB, polypep
Modification date2020032220200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST idsENST00000340954, ENST00000347458, 
ENST00000360426, ENST00000371792, 
ENST00000371802, ENST00000371828, 
ENST00000371856, 
ENST00000412253, 
ENST00000546307, ENST00000001146, 
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)* DoF score28 X 24 X 9=60482 X 2 X 2=8
# samples 312
** MAII scorelog2(31/6048*10)=-4.28611801894684
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(2/8*10)=1.32192809488736
Fusion gene context

PubMed: STAU1 [Title/Abstract] AND CYP26B1 [Title/Abstract] AND fusion [Title/Abstract]

Fusion neoantigen context

PubMed: STAU1 [Title/Abstract] AND CYP26B1 [Title/Abstract] AND neoantigen [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)STAU1(47768119)-CYP26B1(72362548), # samples:2
Anticipated loss of major functional domain due to fusion event.STAU1-CYP26B1 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
STAU1-CYP26B1 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
STAU1-CYP26B1 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
STAU1-CYP26B1 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
STAU1-CYP26B1 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
STAU1-CYP26B1 seems lost the major protein functional domain in Tgene partner, which is a IUPHAR drug target due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneCYP26B1

GO:0006805

xenobiotic metabolic process

26937021

TgeneCYP26B1

GO:0034653

retinoic acid catabolic process

10823918

TgeneCYP26B1

GO:0042573

retinoic acid metabolic process

22020119

TgeneCYP26B1

GO:0055114

oxidation-reduction process

10823918



check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr20:47768119/chr2:72362548)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonRetention analysis results of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features, are available here.

check buttonFusion gene breakpoints across STAU1 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across CYP26B1 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


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Fusion Amino Acid Sequences


check buttonFusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000371828STAU1chr2047768119-ENST00000001146CYP26B1chr272362548-48547554191864481
ENST00000371802STAU1chr2047768119-ENST00000001146CYP26B1chr272362548-465655751666553
ENST00000347458STAU1chr2047768119-ENST00000001146CYP26B1chr272362548-465655751666553
ENST00000340954STAU1chr2047768119-ENST00000001146CYP26B1chr272362548-48547554191864481
ENST00000371792STAU1chr2047768119-ENST00000001146CYP26B1chr272362548-465655751666553
ENST00000360426STAU1chr2047768119-ENST00000001146CYP26B1chr272362548-47316322961741481

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000371828ENST00000001146STAU1chr2047768119-CYP26B1chr272362548-0.0015055870.9984944
ENST00000371802ENST00000001146STAU1chr2047768119-CYP26B1chr272362548-0.0014719060.9985281
ENST00000347458ENST00000001146STAU1chr2047768119-CYP26B1chr272362548-0.0014719060.9985281
ENST00000340954ENST00000001146STAU1chr2047768119-CYP26B1chr272362548-0.0015055870.9984944
ENST00000371792ENST00000001146STAU1chr2047768119-CYP26B1chr272362548-0.0014719060.9985281
ENST00000360426ENST00000001146STAU1chr2047768119-CYP26B1chr272362548-0.001442040.998558

check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.

Get the fusion protein sequences from here.

Fusion protein sequence information is available in the fasta format.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

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Fusion Protein Breakpoint Sequences for STAU1-CYP26B1

check button +/-13 AA sequence from the breakpoints of the fusion protein sequences.
HgeneHchrHbpTgeneTchrTbpLength(fusion protein)BP in fusion proteinPeptide
STAU1chr2047768119CYP26B1chr272362548557179AAKALRILQNEPLPERLEVFSKIFSH
STAU1chr2047768119CYP26B1chr272362548632107AAKALRILQNEPLPERLEVFSKIFSH
STAU1chr2047768119CYP26B1chr272362548755107AAKALRILQNEPLPERLEVFSKIFSH

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Potential FusionNeoAntigen Information of STAU1-CYP26B1 in HLA I

check button Multiple sequence alignments of the potential FusionNeoAntigens per fusion breakpoints. If the MSA is empty, then it means that there were predicted fusion neoantigens in this fusion breakpoint, but those predicted fusion neoantigens were not across the breakpoint, which is not fusion-specific.
STAU1-CYP26B1_47768119_72362548.msa

check button Potential FusionNeoAntigen Information
* We used NetMHCpan v4.1 (%rank<0.5) and deepHLApan v1.1 (immunogenic score>0.5)
Fusion geneHchrHbpTgeneTchrTbpHLA IFusionNeoAntigen peptideBinding scoreImmunogenic scoreNeoantigen start (at BP 13)Neoantigen end (at BP 13)
STAU1-CYP26B1chr2047768119chr272362548755HLA-B35:01EPLPERLEVF0.98320.81221020
STAU1-CYP26B1chr2047768119chr272362548755HLA-B35:08EPLPERLEVF0.97510.7311020
STAU1-CYP26B1chr2047768119chr272362548755HLA-B35:03EPLPERLEVF0.94660.75181020
STAU1-CYP26B1chr2047768119chr272362548755HLA-B35:04EPLPERLEVF0.73240.73911020
STAU1-CYP26B1chr2047768119chr272362548755HLA-B35:02EPLPERLEVF0.73240.73911020
STAU1-CYP26B1chr2047768119chr272362548755HLA-C01:30PLPERLEVF0.14970.96461120
STAU1-CYP26B1chr2047768119chr272362548755HLA-B42:02EPLPERLEVF0.96080.64281020
STAU1-CYP26B1chr2047768119chr272362548755HLA-B39:10EPLPERLEVF0.79640.77391020
STAU1-CYP26B1chr2047768119chr272362548755HLA-B35:12EPLPERLEVF0.73240.73911020
STAU1-CYP26B1chr2047768119chr272362548755HLA-B35:77EPLPERLEVF0.98320.81221020
STAU1-CYP26B1chr2047768119chr272362548755HLA-B35:23EPLPERLEVF0.98150.80031020
STAU1-CYP26B1chr2047768119chr272362548755HLA-B15:11EPLPERLEVF0.97190.67141020
STAU1-CYP26B1chr2047768119chr272362548755HLA-B15:08EPLPERLEVF0.97110.69891020
STAU1-CYP26B1chr2047768119chr272362548755HLA-B35:43EPLPERLEVF0.97020.70171020
STAU1-CYP26B1chr2047768119chr272362548755HLA-B35:30EPLPERLEVF0.96250.63891020
STAU1-CYP26B1chr2047768119chr272362548755HLA-B35:17EPLPERLEVF0.96250.63891020
STAU1-CYP26B1chr2047768119chr272362548755HLA-B35:11EPLPERLEVF0.9390.77561020
STAU1-CYP26B1chr2047768119chr272362548755HLA-B35:24EPLPERLEVF0.93120.85941020
STAU1-CYP26B1chr2047768119chr272362548755HLA-B35:09EPLPERLEVF0.73240.73911020
STAU1-CYP26B1chr2047768119chr272362548755HLA-B18:07EPLPERLEVF0.39850.77561020

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Potential FusionNeoAntigen Information of STAU1-CYP26B1 in HLA II

check button Multiple sequence alignments of the potential FusionNeoAntigens per fusion breakpoints. If the MSA is empty, then it means that there were predicted fusion neoantigens in this fusion breakpoint, but those predicted fusion neoantigens were not across the breakpoint, which is not fusion-specific.
STAU1-CYP26B1_47768119_72362548.msa

check button Potential FusionNeoAntigen Information
* We used NetMHCIIpan v4.1 (%rank<0.5).
Fusion geneHchrHbpTgeneTchrTbpHLA IIFusionNeoAntigen peptideNeoantigen start (at BP 13)Neoantigen end (at BP 13)
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0101AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0101AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0102AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0102AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0102KALRILQNEPLPERL217
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0103AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0105AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0105AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0107AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0107AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0109AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0109AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0109KALRILQNEPLPERL217
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0111AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0111AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0111KALRILQNEPLPERL217
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0113AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0113AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0115AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0115AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0115KALRILQNEPLPERL217
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0117AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0117AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0119AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0119AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0121AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0121AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0123AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0123AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0123KALRILQNEPLPERL217
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0125AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0125AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0127AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0127AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0129AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0129AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0131AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0131AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0303ALRILQNEPLPERLE318
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0411AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0415AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0436AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0442AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0444AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0453AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0459AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0467AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0478AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0478AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0479AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0482AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0482AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0491AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0807AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0810AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0812AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0819AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0819AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0825AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0825AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0832AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0832AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0834AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-0834AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1002AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1002AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1192AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1201AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1201AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1201KALRILQNEPLPERL217
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1203AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1203AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1203KALRILQNEPLPERL217
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1204AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1204AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1204KALRILQNEPLPERL217
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1205AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1205AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1205KALRILQNEPLPERL217
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1206AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1206AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1206KALRILQNEPLPERL217
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1207AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1207AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1207KALRILQNEPLPERL217
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1208AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1208AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1208KALRILQNEPLPERL217
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1209AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1209AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1209KALRILQNEPLPERL217
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1210AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1210AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1210KALRILQNEPLPERL217
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1211AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1211AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1211KALRILQNEPLPERL217
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1212AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1212AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1212KALRILQNEPLPERL217
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1213AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1213AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1213KALRILQNEPLPERL217
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1214AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1214AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1214KALRILQNEPLPERL217
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1215AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1215AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1215KALRILQNEPLPERL217
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1216AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1216AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1216KALRILQNEPLPERL217
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STAU1-CYP26B1chr2047768119chr272362548755DRB1-1608AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1608KALRILQNEPLPERL217
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1609AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1609AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1609KALRILQNEPLPERL217
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1610AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1610AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1610KALRILQNEPLPERL217
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1611AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1611AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1611KALRILQNEPLPERL217
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1612AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1612AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1612KALRILQNEPLPERL217
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1614AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1614AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1614KALRILQNEPLPERL217
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1615AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1615AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1615KALRILQNEPLPERL217
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1616AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1616AAKALRILQNEPLPE015
STAU1-CYP26B1chr2047768119chr272362548755DRB1-1616KALRILQNEPLPERL217
STAU1-CYP26B1chr2047768119chr272362548755DRB3-0201ALRILQNEPLPERLE318
STAU1-CYP26B1chr2047768119chr272362548755DRB3-0201AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB3-0201KALRILQNEPLPERL217
STAU1-CYP26B1chr2047768119chr272362548755DRB3-0204ALRILQNEPLPERLE318
STAU1-CYP26B1chr2047768119chr272362548755DRB3-0204AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB3-0204KALRILQNEPLPERL217
STAU1-CYP26B1chr2047768119chr272362548755DRB3-0224ALRILQNEPLPERLE318
STAU1-CYP26B1chr2047768119chr272362548755DRB3-0224AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB3-0224KALRILQNEPLPERL217
STAU1-CYP26B1chr2047768119chr272362548755DRB5-0204AKALRILQNEPLPER116
STAU1-CYP26B1chr2047768119chr272362548755DRB5-0205AKALRILQNEPLPER116

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Fusion breakpoint peptide structures of STAU1-CYP26B1

check button3D structures of the fusion breakpoint peptide of 14AA sequence that have potential fusion neoantigens
* The minimum length of the amino acid sequence in RoseTTAFold is 14AA. Here, we predicted the 14AA fusion protein breakpoint sequence not the fusion neoantigen peptide, which is shorter than 14 AA.
File nameBPseqHgeneTgeneHchrHbpTchrTbpAAlen
3811ILQNEPLPERLEVFSTAU1CYP26B1chr2047768119chr272362548755

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Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D of STAU1-CYP26B1

check buttonVirtual screening between 25 HLAs (from PDB) and FusionNeoAntigens
* We used Glide to predict the interaction between HLAs and neoantigens.
HLA allelePDB IDFile nameBPseqDocking scoreGlide score
HLA-B14:023BVN3811ILQNEPLPERLEVF-7.9962-8.1096
HLA-B14:023BVN3811ILQNEPLPERLEVF-5.70842-6.74372
HLA-B52:013W393811ILQNEPLPERLEVF-6.83737-6.95077
HLA-B52:013W393811ILQNEPLPERLEVF-4.4836-5.5189
HLA-A11:014UQ23811ILQNEPLPERLEVF-10.0067-10.1201
HLA-A11:014UQ23811ILQNEPLPERLEVF-9.03915-10.0745
HLA-A24:025HGA3811ILQNEPLPERLEVF-6.56204-6.67544
HLA-A24:025HGA3811ILQNEPLPERLEVF-5.42271-6.45801
HLA-B44:053DX83811ILQNEPLPERLEVF-7.85648-8.89178
HLA-B44:053DX83811ILQNEPLPERLEVF-5.3978-5.5112
HLA-A02:016TDR3811ILQNEPLPERLEVF-3.37154-4.40684

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Vaccine Design for the FusionNeoAntigens of STAU1-CYP26B1

check button mRNA and peptide sequences of FusionNeoAntigens that have potential interaction with HLA-Is.
Fusion geneHchrHbpTchrTbpStart in +/-13AAEnd in +/-13AAFusionNeoAntigen peptide sequenceFusionNeoAntigen RNA sequence
STAU1-CYP26B1chr2047768119chr2723625481020EPLPERLEVFAGGCTGGAGGTCTTCTCCAAGATCTTCAGC
STAU1-CYP26B1chr2047768119chr2723625481120PLPERLEVFCTGGAGGTCTTCTCCAAGATCTTCAGC

check button mRNA and peptide sequences of FusionNeoAntigens that have potential interaction with HLA-IIs.
Fusion geneHchrHbpTchrTbpStart in +/-13AAEnd in +/-13AAFusionNeoAntigen peptideFusionNEoAntigen RNA sequence
STAU1-CYP26B1chr2047768119chr272362548015AAKALRILQNEPLPEAGGATCCTGCAGAATGAGCCCCTGCCAGAGAGGCTGGAGGTCTTC
STAU1-CYP26B1chr2047768119chr272362548116AKALRILQNEPLPERATCCTGCAGAATGAGCCCCTGCCAGAGAGGCTGGAGGTCTTCTCC
STAU1-CYP26B1chr2047768119chr272362548217KALRILQNEPLPERLCTGCAGAATGAGCCCCTGCCAGAGAGGCTGGAGGTCTTCTCCAAG
STAU1-CYP26B1chr2047768119chr272362548318ALRILQNEPLPERLECAGAATGAGCCCCTGCCAGAGAGGCTGGAGGTCTTCTCCAAGATC

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Information of the samples that have these potential fusion neoantigens of STAU1-CYP26B1

check button These samples were reported as having these fusion breakpoints. For individual breakpoints, we checked the open reading frames considering multiple gene isoforms and chose the in-frame fusion genes only. Then, we made fusion protein sequences and predicted the fusion neoantigens. These fusion-positive samples may have these potential fusion neoantigens.
Cancer typeFusion geneHchrHbpHenstTchrTbpTenstSample
PRADSTAU1-CYP26B1chr2047768119ENST00000340954chr272362548ENST00000001146TCGA-XJ-A9DI-01A

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Potential target of CAR-T therapy development for STAU1-CYP26B1

check button Predicted 3D structure. We used RoseTTAFold.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, to provide the retention of the transmembrane domain, we only show the protein feature retention information of those transmembrane features


* Minus value of BPloci means that the break point is located before the CDS.
- In-frame and retained 'Transmembrane'.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

check button Subcellular localization prediction of the transmembrane domain retained fusion proteins
* We used DeepLoc 1.0. The order of the X-axis of the barplot is as follows: Entry_ID, Localization, Type, Nucleus, Cytoplasm, Extracellular, Mitochondrion, Cell_membrane, Endoplasmic_reticulum, Plastid, Golgi.apparatus, Lysosome.Vacuole, Peroxisome. Y-axis is the output score of DeepLoc. Clicking the image will open a new tab with a large image.
HgeneHchrHbpHenstTgeneTchrTbpTenstDeepLoc result

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Related Drugs to STAU1-CYP26B1

check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

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Related Diseases to STAU1-CYP26B1

check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource