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Fusion Protein:TTC21A-SALL2

Fusion Gene and Fusion Protein Summary

Fusion gene summary

Fusion partner gene information	Fusion gene name: TTC21A-SALL2
	FusionPDB ID: 94937
	FusionGDB2.0 ID: 94937
		Hgene	Tgene
	Gene symbol	TTC21A	SALL2
	Gene ID	199223	6297
	Gene name	tetratricopeptide repeat domain 21A	spalt like transcription factor 2
	Synonyms	IFT139A\|SPGF37\|STI2	COLB\|HSAL2\|Sal-2\|ZNF795\|p150(Sal2)
	Cytomap	3p22.2	14q11.2
	Type of gene	protein-coding	protein-coding
	Description	tetratricopeptide repeat protein 21ATPR domain containing STI2TPR repeat protein 21Astress-inducible protein 2testicular tissue protein Li 212	sal-like protein 2zinc finger protein 795zinc finger protein SALL2zinc finger protein Spalt-2
	Modification date	20200313	20200313
	UniProtAcc	.	.
Ensembl transtripts involved in fusion gene	ENST ids	ENST00000493856, ENST00000301819, ENST00000431162, ENST00000440121,	ENST00000317492, ENST00000327430, ENST00000450879, ENST00000538754,
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)	* DoF score	1 X 1 X 1=1	5 X 5 X 3=75
	# samples	1	5
	** MAII score	log2(1/1*10)=3.32192809488736	log2(5/75*10)=-0.584962500721156 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0
Fusion gene context	PubMed: TTC21A [Title/Abstract] AND SALL2 [Title/Abstract] AND fusion [Title/Abstract]
Fusion neoantigen context	PubMed: TTC21A [Title/Abstract] AND SALL2 [Title/Abstract] AND neoantigen [Title/Abstract]
Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)	TTC21A(39180277)-SALL2(21993571), # samples:1
Anticipated loss of major functional domain due to fusion event.	TTC21A-SALL2 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. TTC21A-SALL2 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.

* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Partner	Gene	GO ID	GO term	PubMed ID
Tgene	SALL2	GO:0001654	eye development	24412933

Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr3:39180277/chr14:21993571)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.

Retention analysis results of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features, are available here.

Fusion gene breakpoints across TTC21A (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

Fusion gene breakpoints across SALL2 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

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Fusion Amino Acid Sequences

Fusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.

Henst	Tenst	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand	Seq length (transcript)	BP loci (transcript)	Predicted start (transcript)	Predicted stop (transcript)	Seq length (amino acids)
ENST00000301819	TTC21A	chr3	39180277	-	ENST00000327430	SALL2	chr14	21993571	+	8522	4182	3	4493	1496
ENST00000301819	TTC21A	chr3	39180277	-	ENST00000317492	SALL2	chr14	21993571	+	5428	4182	3	4418	1471
ENST00000301819	TTC21A	chr3	39180277	-	ENST00000538754	SALL2	chr14	21993571	+	4989	4182	3	4418	1471
ENST00000301819	TTC21A	chr3	39180277	-	ENST00000450879	SALL2	chr14	21993571	+	6976	4182	3	4418	1471
ENST00000431162	TTC21A	chr3	39180277	-	ENST00000327430	SALL2	chr14	21993571	+	8473	4133	68	4444	1458
ENST00000431162	TTC21A	chr3	39180277	-	ENST00000317492	SALL2	chr14	21993571	+	5379	4133	68	4369	1433
ENST00000431162	TTC21A	chr3	39180277	-	ENST00000538754	SALL2	chr14	21993571	+	4940	4133	68	4369	1433
ENST00000431162	TTC21A	chr3	39180277	-	ENST00000450879	SALL2	chr14	21993571	+	6927	4133	68	4369	1433
ENST00000440121	TTC21A	chr3	39180277	-	ENST00000327430	SALL2	chr14	21993571	+	8205	3865	31	4176	1381
ENST00000440121	TTC21A	chr3	39180277	-	ENST00000317492	SALL2	chr14	21993571	+	5111	3865	31	4101	1356
ENST00000440121	TTC21A	chr3	39180277	-	ENST00000538754	SALL2	chr14	21993571	+	4672	3865	31	4101	1356
ENST00000440121	TTC21A	chr3	39180277	-	ENST00000450879	SALL2	chr14	21993571	+	6659	3865	31	4101	1356

DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.

Henst	Tenst	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand	No-coding score	Coding score
ENST00000301819	ENST00000327430	TTC21A	chr3	39180277	-	SALL2	chr14	21993571	+	0.003789065	0.99621093
ENST00000301819	ENST00000317492	TTC21A	chr3	39180277	-	SALL2	chr14	21993571	+	0.006154777	0.99384516
ENST00000301819	ENST00000538754	TTC21A	chr3	39180277	-	SALL2	chr14	21993571	+	0.007782867	0.99221706
ENST00000301819	ENST00000450879	TTC21A	chr3	39180277	-	SALL2	chr14	21993571	+	0.008753456	0.9912465
ENST00000431162	ENST00000327430	TTC21A	chr3	39180277	-	SALL2	chr14	21993571	+	0.003780494	0.9962196
ENST00000431162	ENST00000317492	TTC21A	chr3	39180277	-	SALL2	chr14	21993571	+	0.004828702	0.99517125
ENST00000431162	ENST00000538754	TTC21A	chr3	39180277	-	SALL2	chr14	21993571	+	0.006259447	0.9937405
ENST00000431162	ENST00000450879	TTC21A	chr3	39180277	-	SALL2	chr14	21993571	+	0.006921282	0.99307865
ENST00000440121	ENST00000327430	TTC21A	chr3	39180277	-	SALL2	chr14	21993571	+	0.004683081	0.995317
ENST00000440121	ENST00000317492	TTC21A	chr3	39180277	-	SALL2	chr14	21993571	+	0.004177048	0.9958229
ENST00000440121	ENST00000538754	TTC21A	chr3	39180277	-	SALL2	chr14	21993571	+	0.005559874	0.9944402
ENST00000440121	ENST00000450879	TTC21A	chr3	39180277	-	SALL2	chr14	21993571	+	0.006083753	0.9939162

Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.

Get the fusion protein sequences from here.

Fusion protein sequence information is available in the fasta format.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

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Fusion Protein Breakpoint Sequences for TTC21A-SALL2

+/-13 AA sequence from the breakpoints of the fusion protein sequences.

Hgene	Hchr	Hbp	Tgene	Tchr	Tbp	Length(fusion protein)	BP in fusion protein	Peptide
TTC21A	chr3	39180277	SALL2	chr14	21993571	3865	1278	WRDGKWVSGEGIQQPPRFWVLRAHGS
TTC21A	chr3	39180277	SALL2	chr14	21993571	4133	1355	SGEGIQKMTHSSPQPPRFWVLRAHGS
TTC21A	chr3	39180277	SALL2	chr14	21993571	4182	1393	GEGIQKMTHSSPFQPPRFWVLRAHGS

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Potential FusionNeoAntigen Information of TTC21A-SALL2 in HLA I

Multiple sequence alignments of the potential FusionNeoAntigens per fusion breakpoints. If the MSA is empty, then it means that there were predicted fusion neoantigens in this fusion breakpoint, but those predicted fusion neoantigens were not across the breakpoint, which is not fusion-specific.

TTC21A-SALL2_39180277_21993571.msa

Potential FusionNeoAntigen Information
* We used NetMHCpan v4.1 (%rank<0.5) and deepHLApan v1.1 (immunogenic score>0.5)

Fusion gene	Hchr	Hbp	Tgene	Tchr	Tbp	HLA I	FusionNeoAntigen peptide	Binding score	Immunogenic score	Neoantigen start (at BP 13)	Neoantigen end (at BP 13)
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B35:05	SPFQPPRF	0.9902	0.5138	10	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B53:01	PFQPPRFW	0.9306	0.5509	11	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B57:01	HSSPQPPRF	0.9993	0.9328	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B57:01	SSPQPPRFW	0.9993	0.9406	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B58:02	HSSPQPPRF	0.9989	0.9347	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B57:03	HSSPQPPRF	0.998	0.9506	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B15:17	HSSPQPPRF	0.998	0.8653	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B15:16	HSSPQPPRF	0.9975	0.6352	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B58:01	HSSPQPPRF	0.9967	0.8583	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B58:02	SSPQPPRFW	0.9967	0.9214	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B58:01	SSPQPPRFW	0.9963	0.9028	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A31:06	HSSPFQPPR	0.9931	0.5157	8	17
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A74:11	HSSPFQPPR	0.993	0.7442	8	17
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A74:03	HSSPFQPPR	0.993	0.7442	8	17
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A74:09	HSSPFQPPR	0.993	0.7442	8	17
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B39:06	THSSPFQPP	0.9917	0.8106	7	16
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B57:03	SSPQPPRFW	0.9895	0.9612	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B14:02	QQPPRFWVL	0.9893	0.9803	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B14:01	QQPPRFWVL	0.9893	0.9803	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B07:05	SPQPPRFWV	0.9888	0.6049	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B07:02	SPQPPRFWV	0.9885	0.7471	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B15:03	HSSPQPPRF	0.9869	0.6854	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A31:02	HSSPFQPPR	0.9867	0.7051	8	17
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B39:24	FQPPRFWVL	0.9851	0.8353	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B57:01	GIQQPPRFW	0.9834	0.9896	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B14:02	FQPPRFWVL	0.9825	0.9761	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B14:01	FQPPRFWVL	0.9825	0.9761	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B15:17	SSPQPPRFW	0.9797	0.8256	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B39:24	QQPPRFWVL	0.9714	0.8161	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B15:16	SSPQPPRFW	0.9696	0.6734	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B58:02	SSPFQPPRF	0.968	0.9221	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B15:16	SSPFQPPRF	0.9663	0.5394	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B08:01	FQPPRFWVL	0.9614	0.9285	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B08:01	QQPPRFWVL	0.9607	0.868	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A02:22	FQPPRFWVL	0.9589	0.9109	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B35:01	SPFQPPRFW	0.9528	0.8952	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B48:01	QQPPRFWVL	0.9456	0.8765	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A24:25	FQPPRFWVL	0.9407	0.6993	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A24:20	FQPPRFWVL	0.9348	0.6981	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A24:15	FQPPRFWVL	0.9328	0.7086	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A02:21	FQPPRFWVL	0.9322	0.9347	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B35:05	SPFQPPRFW	0.932	0.7122	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A02:60	FQPPRFWVL	0.9227	0.8991	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A02:24	FQPPRFWVL	0.9208	0.8994	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A02:30	FQPPRFWVL	0.9208	0.8994	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A02:67	FQPPRFWVL	0.9208	0.8994	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B39:01	FQPPRFWVL	0.9185	0.9955	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A24:31	FQPPRFWVL	0.9168	0.7076	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A02:04	FQPPRFWVL	0.9162	0.9532	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B48:01	FQPPRFWVL	0.9133	0.7557	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A02:17	FQPPRFWVL	0.9132	0.8632	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B58:01	GIQQPPRFW	0.9113	0.9827	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B56:01	SPQPPRFWV	0.9112	0.5552	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B08:09	FQPPRFWVL	0.9053	0.8658	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B58:02	SPFQPPRFW	0.9029	0.9735	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-A24:25	QQPPRFWVL	0.8895	0.6038	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-A24:20	QQPPRFWVL	0.8853	0.6032	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B08:09	QQPPRFWVL	0.8851	0.9443	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B58:02	GIQQPPRFW	0.8846	0.9774	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-A24:15	QQPPRFWVL	0.8756	0.607	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B39:01	QQPPRFWVL	0.8727	0.9914	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-A32:13	HSSPQPPRF	0.8645	0.9588	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-A32:13	SSPQPPRFW	0.8599	0.9517	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A02:29	FQPPRFWVL	0.8581	0.8943	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-A24:31	QQPPRFWVL	0.8423	0.6	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A24:14	FQPPRFWVL	0.8352	0.8344	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-A02:21	IQQPPRFWV	0.8251	0.9009	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A02:20	FQPPRFWVL	0.8184	0.9029	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B58:01	SPFQPPRFW	0.8171	0.9368	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B35:08	SPFQPPRFW	0.8105	0.846	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B39:13	FQPPRFWVL	0.8047	0.9972	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-A24:20	PQPPRFWVL	0.7953	0.6089	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B13:02	IQQPPRFWV	0.7946	0.9713	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-A24:15	PQPPRFWVL	0.7863	0.6382	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-A32:13	GIQQPPRFW	0.7811	0.9752	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-A24:25	PQPPRFWVL	0.7782	0.6139	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B38:01	FQPPRFWVL	0.77	0.9979	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A02:27	FQPPRFWVL	0.7659	0.8601	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B15:10	FQPPRFWVL	0.7563	0.9225	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B39:13	QQPPRFWVL	0.7251	0.9951	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-A24:31	PQPPRFWVL	0.7185	0.6022	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B38:01	QQPPRFWVL	0.7038	0.9975	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B38:02	QQPPRFWVL	0.6883	0.9974	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-A02:21	QQPPRFWVL	0.6878	0.8896	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-A24:14	QQPPRFWVL	0.6829	0.804	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B15:10	QQPPRFWVL	0.6442	0.8976	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-A02:17	QQPPRFWVL	0.6225	0.8678	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B15:37	QQPPRFWVL	0.6134	0.8834	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B13:02	QQPPRFWVL	0.5884	0.9855	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-A32:13	QQPPRFWVL	0.565	0.9796	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B13:01	QQPPRFWVL	0.56	0.9975	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B15:37	FQPPRFWVL	0.5578	0.8979	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B13:01	FQPPRFWVL	0.5464	0.9974	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-A24:14	PQPPRFWVL	0.5363	0.5984	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A02:19	FQPPRFWVL	0.5238	0.8428	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-A24:14	HSSPQPPRF	0.4873	0.5423	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B07:10	FQPPRFWVL	0.4375	0.6721	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B46:01	FQPPRFWVL	0.4129	0.7773	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B52:01	HSSPQPPRF	0.3869	0.9152	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B82:01	SPQPPRFWV	0.3311	0.6266	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B52:01	FQPPRFWVL	0.2467	0.9923	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B81:01	SPQPPRFWV	0.2418	0.7514	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B52:01	QQPPRFWVL	0.2391	0.9956	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B52:01	IQQPPRFWV	0.1662	0.9982	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B57:01	HSSPQPPRFW	1	0.9602	9	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B57:01	HSSPFQPPRF	0.9999	0.9248	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B57:01	SSPFQPPRFW	0.9998	0.9742	9	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B58:02	HSSPQPPRFW	0.9998	0.9164	9	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B58:02	HSSPFQPPRF	0.9998	0.9121	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B58:01	HSSPQPPRFW	0.9996	0.9269	9	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B57:03	HSSPFQPPRF	0.9996	0.9598	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B57:03	HSSPQPPRFW	0.9994	0.9734	9	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B15:17	HSSPFQPPRF	0.999	0.8636	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B15:16	HSSPFQPPRF	0.999	0.627	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B58:01	HSSPFQPPRF	0.999	0.8139	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B07:10	SPQPPRFWVL	0.9985	0.7396	11	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B58:02	SSPFQPPRFW	0.9983	0.9563	9	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B07:02	SPQPPRFWVL	0.9983	0.7078	11	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B07:05	SPQPPRFWVL	0.9983	0.5962	11	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B15:16	HSSPQPPRFW	0.9981	0.7677	9	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B15:17	HSSPQPPRFW	0.9978	0.8426	9	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B58:01	SSPFQPPRFW	0.997	0.9346	9	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B44:03	GEGIQQPPRF	0.9953	0.8735	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B47:01	GEGIQQPPRF	0.9934	0.5678	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B57:03	SSPFQPPRFW	0.9929	0.9873	9	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B15:18	THSSPQPPRF	0.9911	0.6981	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B38:01	THSSPQPPRF	0.9895	0.8724	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B38:02	THSSPQPPRF	0.9878	0.8691	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B15:10	THSSPQPPRF	0.9854	0.5619	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-A74:09	MTHSSPQPPR	0.9816	0.6471	7	17
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B15:16	SSPFQPPRFW	0.9816	0.7563	9	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-A74:03	MTHSSPQPPR	0.9816	0.6471	7	17
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-A74:11	MTHSSPQPPR	0.9816	0.6471	7	17
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B58:02	THSSPQPPRF	0.9755	0.9499	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B57:03	THSSPQPPRF	0.9738	0.9545	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B44:05	GEGIQQPPRF	0.9734	0.6655	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B48:01	IQQPPRFWVL	0.9718	0.6061	11	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B15:17	SSPFQPPRFW	0.9684	0.9532	9	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B15:37	THSSPQPPRF	0.9546	0.6172	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B08:01	SPQPPRFWVL	0.946	0.6105	11	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-A32:13	HSSPQPPRFW	0.9233	0.9763	9	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B08:09	SPQPPRFWVL	0.9208	0.7008	11	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A32:13	SSPFQPPRFW	0.8836	0.9638	9	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B56:01	SPFQPPRFWV	0.8234	0.7237	10	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B51:02	SPFQPPRFWV	0.8034	0.6654	10	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B35:03	SPQPPRFWVL	0.7731	0.7443	11	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B51:01	SPFQPPRFWV	0.7395	0.6739	10	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B55:01	SPFQPPRFWV	0.6972	0.6131	10	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B35:04	SPQPPRFWVL	0.6104	0.8919	11	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B35:02	SPQPPRFWVL	0.6104	0.8919	11	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B07:10	THSSPQPPRF	0.5756	0.5434	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B82:01	SPQPPRFWVL	0.5573	0.5917	11	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B81:01	SPFQPPRFWV	0.4673	0.8572	10	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B57:01	MTHSSPQPPRF	1	0.966	7	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B57:01	HSSPFQPPRFW	1	0.9757	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B57:01	THSSPQPPRFW	0.9999	0.9567	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B58:02	MTHSSPQPPRF	0.9999	0.9635	7	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B58:02	HSSPFQPPRFW	0.9999	0.9449	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B44:03	GEGIQQPPRFW	0.9998	0.9804	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B15:17	MTHSSPQPPRF	0.9998	0.8009	7	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B44:02	GEGIQQPPRFW	0.9998	0.7706	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B57:03	MTHSSPQPPRF	0.9997	0.9755	7	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B58:01	HSSPFQPPRFW	0.9997	0.95	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B57:03	HSSPFQPPRFW	0.9997	0.9893	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B15:16	MTHSSPQPPRF	0.9997	0.7996	7	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B58:02	THSSPQPPRFW	0.9995	0.9334	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B15:16	HSSPFQPPRFW	0.9995	0.829	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B07:02	SPFQPPRFWVL	0.9993	0.6798	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B58:01	MTHSSPQPPRF	0.9993	0.9522	7	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B07:05	SPFQPPRFWVL	0.9992	0.6022	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B38:01	THSSPFQPPRF	0.9992	0.8787	7	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B15:17	HSSPFQPPRFW	0.9992	0.9493	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B58:01	THSSPQPPRFW	0.9991	0.9381	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B07:10	SPFQPPRFWVL	0.9991	0.7146	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B44:05	GEGIQQPPRFW	0.9989	0.8633	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B38:02	THSSPFQPPRF	0.9989	0.8818	7	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B15:18	THSSPFQPPRF	0.9986	0.7166	7	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B53:01	HSSPFQPPRFW	0.9962	0.5122	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A32:13	HSSPFQPPRFW	0.9962	0.9803	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A74:11	MTHSSPFQPPR	0.9925	0.7177	6	17
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A74:09	MTHSSPFQPPR	0.9925	0.7177	6	17
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A74:03	MTHSSPFQPPR	0.9925	0.7177	6	17
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A31:02	MTHSSPFQPPR	0.9919	0.7279	6	17
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B57:01	HSSPQPPRFWV	0.9899	0.9705	9	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-A74:11	KMTHSSPQPPR	0.9887	0.8985	6	17
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-A74:09	KMTHSSPQPPR	0.9887	0.8985	6	17
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-A74:03	KMTHSSPQPPR	0.9887	0.8985	6	17
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-A31:02	IQQPPRFWVLR	0.9863	0.9514	11	22
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B58:02	HSSPQPPRFWV	0.9829	0.9379	9	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B07:02	SPQPPRFWVLR	0.9823	0.785	11	22
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B08:01	SPFQPPRFWVL	0.9807	0.8056	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-A74:03	IQQPPRFWVLR	0.9806	0.9562	11	22
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-A74:09	IQQPPRFWVLR	0.9806	0.9562	11	22
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-A74:11	IQQPPRFWVLR	0.9806	0.9562	11	22
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B38:01	THSSPQPPRFW	0.9803	0.9746	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B35:03	SPFQPPRFWVL	0.9629	0.9357	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-A31:06	IQQPPRFWVLR	0.9439	0.9033	11	22
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B35:05	SPFQPPRFWVL	0.9374	0.7406	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B81:01	SPFQPPRFWVL	0.9342	0.5622	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B07:02	SSPQPPRFWVL	0.8983	0.6766	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B35:02	SPFQPPRFWVL	0.8571	0.978	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B35:04	SPFQPPRFWVL	0.8571	0.978	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B82:01	SPFQPPRFWVL	0.7857	0.6688	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C01:17	SSPQPPRF	0.9972	0.9033	10	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C01:30	SSPQPPRF	0.9898	0.9249	10	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B51:07	SPFQPPRF	0.9649	0.7375	10	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C03:19	HSSPQPPRF	0.9959	0.9686	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C15:04	HSSPQPPRF	0.9958	0.8564	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C05:09	HSSPQPPRF	0.9951	0.91	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C12:12	FQPPRFWVL	0.9949	0.979	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B15:21	HSSPQPPRF	0.9939	0.8884	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C03:08	HSSPQPPRF	0.9938	0.832	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A31:01	HSSPFQPPR	0.9936	0.6739	8	17
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C06:03	FQPPRFWVL	0.9919	0.9984	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C12:04	FQPPRFWVL	0.9917	0.9983	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C03:07	HSSPQPPRF	0.9913	0.9685	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C15:06	HSSPQPPRF	0.9894	0.8486	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B07:12	SPQPPRFWV	0.984	0.7945	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C04:06	HSSPQPPRF	0.9777	0.9	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C07:10	HSSPQPPRF	0.9651	0.9239	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B39:05	THSSPFQPP	0.9649	0.878	7	16
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C07:19	HSSPQPPRF	0.9639	0.6842	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B15:04	FQPPRFWVL	0.9636	0.9927	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A02:05	FQPPRFWVL	0.9636	0.8466	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A02:02	FQPPRFWVL	0.9622	0.81	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C07:27	HSSPQPPRF	0.9556	0.9202	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B39:09	FQPPRFWVL	0.9503	0.9503	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C07:95	HSSPQPPRF	0.9465	0.6748	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C07:05	HSSPQPPRF	0.9393	0.9278	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A24:02	FQPPRFWVL	0.9348	0.6981	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C03:19	FQPPRFWVL	0.9331	0.9973	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C12:16	FQPPRFWVL	0.9307	0.9918	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C03:14	HSSPQPPRF	0.9283	0.97	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A02:07	FQPPRFWVL	0.9255	0.9141	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A02:01	FQPPRFWVL	0.9208	0.8994	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C04:14	HSSPQPPRF	0.9201	0.8364	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B39:12	QQPPRFWVL	0.9109	0.9922	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C04:14	FQPPRFWVL	0.9097	0.9732	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B39:12	FQPPRFWVL	0.9037	0.9958	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B78:01	SPQPPRFWV	0.8983	0.7552	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C08:13	FQPPRFWVL	0.8912	0.9958	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C08:04	FQPPRFWVL	0.8912	0.9958	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-C07:13	QQPPRFWVL	0.8905	0.9672	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B54:01	SPQPPRFWV	0.8879	0.7507	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-A24:02	QQPPRFWVL	0.8853	0.6032	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C04:06	FQPPRFWVL	0.885	0.9888	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B07:04	SPQPPRFWV	0.8825	0.6664	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B39:09	QQPPRFWVL	0.8772	0.9446	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-C07:05	QQPPRFWVL	0.876	0.9859	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C03:07	FQPPRFWVL	0.8717	0.9943	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C07:13	FQPPRFWVL	0.8661	0.9901	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C07:05	FQPPRFWVL	0.8642	0.9944	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-C07:29	QQPPRFWVL	0.8619	0.9838	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-C04:14	QQPPRFWVL	0.8615	0.9881	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-C07:10	QQPPRFWVL	0.8593	0.9884	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C08:04	HSSPQPPRF	0.856	0.9408	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C08:13	HSSPQPPRF	0.856	0.9408	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C07:10	FQPPRFWVL	0.8458	0.9952	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C07:29	FQPPRFWVL	0.8423	0.9912	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B51:08	SPQPPRFWV	0.8391	0.605	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B39:08	FQPPRFWVL	0.8375	0.9899	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C08:03	FQPPRFWVL	0.8346	0.9979	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-C07:80	QQPPRFWVL	0.8331	0.9872	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-C07:67	QQPPRFWVL	0.8331	0.9872	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C07:80	FQPPRFWVL	0.831	0.9935	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C07:67	FQPPRFWVL	0.831	0.9935	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B42:02	SPQPPRFWV	0.8243	0.6986	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C07:19	FQPPRFWVL	0.8147	0.9656	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-A02:05	QQPPRFWVL	0.8122	0.793	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-C07:19	QQPPRFWVL	0.8114	0.9262	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-C07:95	QQPPRFWVL	0.8108	0.9347	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C12:16	HSSPQPPRF	0.8068	0.9175	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B14:03	QQPPRFWVL	0.8063	0.9628	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-A24:02	PQPPRFWVL	0.7953	0.6089	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-C07:46	QQPPRFWVL	0.7908	0.977	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-C12:16	QQPPRFWVL	0.7897	0.9858	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B14:03	FQPPRFWVL	0.7882	0.9594	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C07:46	FQPPRFWVL	0.7875	0.9881	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C07:27	FQPPRFWVL	0.7836	0.9924	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B39:05	FQPPRFWVL	0.78	0.9946	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-C07:27	QQPPRFWVL	0.7793	0.9875	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C07:95	FQPPRFWVL	0.7736	0.9635	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B42:01	SPQPPRFWV	0.7535	0.6961	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C03:14	FQPPRFWVL	0.7468	0.996	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C02:06	FQPPRFWVL	0.7464	0.9884	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B39:08	QQPPRFWVL	0.7328	0.9897	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B39:05	QQPPRFWVL	0.699	0.9907	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C01:17	FQPPRFWVL	0.6856	0.9815	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-A02:07	QQPPRFWVL	0.6213	0.8616	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-C01:17	QQPPRFWVL	0.6161	0.9806	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C04:10	FQPPRFWVL	0.6115	0.9741	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C12:12	HSSPQPPRF	0.6049	0.832	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C04:07	FQPPRFWVL	0.6036	0.9649	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-C01:30	QQPPRFWVL	0.5918	0.9818	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C08:03	HSSPQPPRF	0.5827	0.9551	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B56:04	SPQPPRFWV	0.5749	0.6057	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C01:17	SSPFQPPRF	0.5713	0.9075	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C12:04	HSSPQPPRF	0.5603	0.9934	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B07:04	SPFQPPRFW	0.5586	0.5124	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B48:03	QQPPRFWVL	0.5574	0.8788	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C06:03	HSSPQPPRF	0.5332	0.9894	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C01:30	SSPFQPPRF	0.4926	0.9178	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C07:13	PQPPRFWVL	0.4843	0.9042	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C01:30	FQPPRFWVL	0.4682	0.9836	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B48:03	FQPPRFWVL	0.448	0.6912	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B51:07	SPFQPPRFW	0.4378	0.9178	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C07:29	PQPPRFWVL	0.424	0.9485	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B44:08	SPFQPPRFW	0.3822	0.5845	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B51:08	SPFQPPRFW	0.3536	0.552	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C02:06	HSSPQPPRF	0.3514	0.9377	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C01:30	PQPPRFWVL	0.3106	0.9713	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B73:01	THSSPFQPP	0.2325	0.8418	7	16
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B39:10	SPQPPRFWV	0.2297	0.8939	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B44:08	GIQQPPRFW	0.2059	0.7404	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B51:07	FQPPRFWVL	0.2049	0.991	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B42:02	SPFQPPRFW	0.2007	0.7014	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B51:07	QQPPRFWVL	0.1773	0.994	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B07:12	SPQPPRFWVL	0.996	0.7695	11	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B40:03	GEGIQQPPRF	0.9949	0.6418	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B44:09	GEGIQQPPRF	0.9936	0.6519	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B44:08	GEGIQQPPRF	0.9913	0.5768	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-A31:01	MTHSSPQPPR	0.9856	0.6157	7	17
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B07:04	SPQPPRFWVL	0.9834	0.6346	11	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B39:05	THSSPQPPRF	0.9786	0.8268	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B42:02	SPQPPRFWVL	0.966	0.6169	11	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B42:01	SPQPPRFWVL	0.9523	0.6165	11	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B44:10	GEGIQQPPRF	0.9357	0.8844	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B54:01	SPFQPPRFWV	0.8937	0.832	10	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C01:30	SPQPPRFWVL	0.8613	0.9602	11	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B07:04	SPFQPPRFWV	0.8416	0.7348	10	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B39:10	SPQPPRFWVL	0.82	0.8541	11	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B48:03	IQQPPRFWVL	0.711	0.5469	11	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B51:08	SPFQPPRFWV	0.6605	0.721	10	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B35:12	SPQPPRFWVL	0.6104	0.8919	11	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B78:01	SPQPPRFWVL	0.4481	0.5195	11	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B44:08	GEGIQQPPRFW	0.9998	0.8133	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B44:04	GEGIQQPPRFW	0.9997	0.7245	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B07:12	SPFQPPRFWVL	0.9963	0.7855	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A31:01	MTHSSPFQPPR	0.9947	0.6701	6	17
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B07:04	SPFQPPRFWVL	0.9947	0.6702	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C01:17	SSPQPPRFWVL	0.9907	0.9293	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-A31:01	IQQPPRFWVLR	0.9867	0.9475	11	22
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B42:02	SPFQPPRFWVL	0.9862	0.7856	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B42:01	SPFQPPRFWVL	0.9822	0.7867	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C01:30	SSPQPPRFWVL	0.9796	0.9562	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B56:04	SPFQPPRFWVL	0.945	0.5486	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B39:10	SPFQPPRFWVL	0.9167	0.9478	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B78:01	SPFQPPRFWVL	0.8742	0.6781	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B35:12	SPFQPPRFWVL	0.8571	0.978	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B42:01	SPQPPRFWVLR	0.6965	0.782	11	22
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C01:03	SSPQPPRF	0.9977	0.799	10	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C01:02	SSPQPPRF	0.9974	0.9011	10	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B35:17	SPFQPPRF	0.9926	0.7001	10	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B35:30	SPFQPPRF	0.9926	0.7001	10	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B35:11	SPFQPPRF	0.9888	0.8831	10	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B35:23	SPFQPPRF	0.9883	0.8385	10	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B15:24	IQQPPRFW	0.9867	0.9419	11	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B35:24	SPFQPPRF	0.9861	0.9169	10	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B53:02	PFQPPRFW	0.9517	0.6503	11	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B35:43	SPFQPPRF	0.9312	0.8344	10	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B18:07	SPFQPPRF	0.7636	0.943	10	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B67:01	SPFQPPRF	0.6861	0.7755	10	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B57:10	SSPQPPRFW	0.9993	0.9406	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B57:10	HSSPQPPRF	0.9993	0.9328	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B58:06	HSSPQPPRF	0.9988	0.8328	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B57:04	HSSPQPPRF	0.9985	0.8602	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C03:02	HSSPQPPRF	0.9981	0.9682	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B57:02	HSSPQPPRF	0.9974	0.906	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C03:67	HSSPQPPRF	0.996	0.972	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C04:03	HSSPQPPRF	0.996	0.8797	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C15:09	HSSPQPPRF	0.9958	0.8564	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B57:04	SSPQPPRFW	0.9957	0.8454	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C03:04	HSSPQPPRF	0.9954	0.9832	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C03:03	HSSPQPPRF	0.9954	0.9832	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B58:06	SSPQPPRFW	0.9953	0.906	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C05:01	HSSPQPPRF	0.9951	0.91	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C07:22	HSSPQPPRF	0.9943	0.6689	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C12:03	FQPPRFWVL	0.994	0.995	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C18:01	HSSPQPPRF	0.9938	0.83	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A74:01	HSSPFQPPR	0.993	0.7442	8	17
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B35:11	HSSPQPPRF	0.9926	0.8672	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B15:13	HSSPQPPRF	0.9916	0.5665	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C03:05	HSSPQPPRF	0.9903	0.8976	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C03:17	HSSPQPPRF	0.9899	0.9562	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B07:09	SPQPPRFWV	0.9898	0.7077	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B07:22	SPQPPRFWV	0.9885	0.7471	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-A32:01	HSSPQPPRF	0.9862	0.9312	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C15:05	HSSPQPPRF	0.9854	0.8975	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B35:28	HSSPQPPRF	0.9852	0.8882	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B57:10	GIQQPPRFW	0.9834	0.9896	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C15:02	HSSPQPPRF	0.9817	0.796	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B15:73	FQPPRFWVL	0.9763	0.9891	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C04:04	HSSPQPPRF	0.9762	0.8534	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C06:02	FQPPRFWVL	0.9761	0.9983	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C06:17	FQPPRFWVL	0.9761	0.9983	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C06:06	HSSPQPPRF	0.9759	0.9908	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B58:06	SSPFQPPRF	0.9698	0.76	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B57:02	SSPQPPRFW	0.963	0.9037	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B08:18	FQPPRFWVL	0.9614	0.9285	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C07:01	HSSPQPPRF	0.9609	0.6782	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B08:18	QQPPRFWVL	0.9607	0.868	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C07:04	HSSPQPPRF	0.9597	0.8458	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C03:04	FQPPRFWVL	0.9558	0.997	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C03:03	FQPPRFWVL	0.9558	0.997	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C07:17	HSSPQPPRF	0.9551	0.9442	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C03:17	FQPPRFWVL	0.9548	0.9917	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B07:09	SPFQPPRFW	0.9542	0.5354	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-C06:17	QQPPRFWVL	0.9541	0.9975	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-C06:02	QQPPRFWVL	0.9541	0.9975	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B15:08	HSSPQPPRF	0.9535	0.8156	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B15:73	QQPPRFWVL	0.9534	0.9941	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B35:77	SPFQPPRFW	0.9528	0.8952	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A02:03	FQPPRFWVL	0.9518	0.9386	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B35:23	SPFQPPRFW	0.9506	0.8776	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B15:24	HSSPQPPRF	0.95	0.8754	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B57:02	SSPFQPPRF	0.945	0.8862	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C16:01	FQPPRFWVL	0.9449	0.9916	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C12:02	FQPPRFWVL	0.9449	0.9925	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C16:04	FQPPRFWVL	0.9425	0.9955	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B35:30	SPFQPPRFW	0.9391	0.795	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B35:17	SPFQPPRFW	0.9391	0.795	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C03:67	FQPPRFWVL	0.9389	0.9949	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B35:43	HSSPQPPRF	0.9357	0.8153	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-A32:01	GIQQPPRFW	0.9351	0.9822	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A02:14	FQPPRFWVL	0.9346	0.9341	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C03:05	FQPPRFWVL	0.9326	0.9841	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A02:06	FQPPRFWVL	0.9322	0.9347	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B15:30	FQPPRFWVL	0.9297	0.9937	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B39:31	FQPPRFWVL	0.9259	0.9956	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B39:02	FQPPRFWVL	0.9199	0.9971	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C16:02	FQPPRFWVL	0.9194	0.997	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-C03:67	QQPPRFWVL	0.9156	0.9935	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B56:05	SPQPPRFWV	0.9133	0.5549	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B57:04	GIQQPPRFW	0.9129	0.9244	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B39:02	QQPPRFWVL	0.9088	0.9946	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B39:31	QQPPRFWVL	0.905	0.9917	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C16:04	HSSPQPPRF	0.8902	0.9541	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B78:02	SPQPPRFWV	0.884	0.851	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C15:05	FQPPRFWVL	0.8792	0.9834	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B15:30	QQPPRFWVL	0.877	0.9945	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C03:06	HSSPQPPRF	0.8767	0.9834	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B35:24	SPFQPPRFW	0.8741	0.9138	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B59:01	SPQPPRFWV	0.8687	0.6784	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B15:13	SPFQPPRFW	0.8686	0.7418	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-C07:04	QQPPRFWVL	0.8652	0.9497	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B40:40	QQPPRFWVL	0.8604	0.522	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C04:04	FQPPRFWVL	0.8588	0.9893	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C07:04	FQPPRFWVL	0.8545	0.9719	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B55:02	SPQPPRFWV	0.8538	0.653	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-C07:22	QQPPRFWVL	0.8496	0.9047	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B58:06	GIQQPPRFW	0.8463	0.9569	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-C07:17	QQPPRFWVL	0.8359	0.9852	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B51:13	SPQPPRFWV	0.8348	0.5319	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C08:01	FQPPRFWVL	0.8346	0.9979	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-C07:02	QQPPRFWVL	0.8331	0.9872	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C07:02	FQPPRFWVL	0.831	0.9935	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-C06:06	QQPPRFWVL	0.8278	0.9966	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C03:06	FQPPRFWVL	0.8276	0.9972	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C06:06	FQPPRFWVL	0.8255	0.9967	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-A02:06	IQQPPRFWV	0.8251	0.9009	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-C06:08	QQPPRFWVL	0.8241	0.9956	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B51:14	SPQPPRFWV	0.8195	0.5492	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B39:11	FQPPRFWVL	0.8169	0.981	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B08:12	FQPPRFWVL	0.8161	0.9726	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-C04:04	QQPPRFWVL	0.8128	0.9922	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B08:12	QQPPRFWVL	0.8091	0.9536	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C07:22	FQPPRFWVL	0.805	0.9572	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C07:17	FQPPRFWVL	0.795	0.9934	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B51:21	SPQPPRFWV	0.7934	0.696	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-C07:01	QQPPRFWVL	0.7923	0.9192	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C16:02	HSSPQPPRF	0.7907	0.9937	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C06:08	FQPPRFWVL	0.79	0.9959	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B38:05	FQPPRFWVL	0.77	0.9979	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C14:02	FQPPRFWVL	0.7637	0.9894	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C14:03	FQPPRFWVL	0.7637	0.9894	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B58:06	SPFQPPRFW	0.7614	0.9324	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C07:01	FQPPRFWVL	0.7521	0.9572	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-C18:01	QQPPRFWVL	0.7498	0.9859	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C02:10	FQPPRFWVL	0.7496	0.9921	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C02:02	FQPPRFWVL	0.7496	0.9921	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C12:02	HSSPQPPRF	0.7414	0.9368	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-C01:03	QQPPRFWVL	0.7374	0.9813	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C17:01	FQPPRFWVL	0.7349	0.9833	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-A25:01	HSSPQPPRF	0.7326	0.77	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C12:03	HSSPQPPRF	0.7261	0.9625	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B39:11	QQPPRFWVL	0.7175	0.978	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B55:04	SPQPPRFWV	0.7138	0.7066	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C16:01	HSSPQPPRF	0.7114	0.9503	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C01:03	FQPPRFWVL	0.7104	0.982	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B38:05	QQPPRFWVL	0.7038	0.9975	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C01:02	FQPPRFWVL	0.702	0.9812	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-A02:14	QQPPRFWVL	0.6938	0.8775	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B35:11	SPFQPPRFW	0.689	0.9239	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-A02:06	QQPPRFWVL	0.6878	0.8896	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B51:29	SPQPPRFWV	0.6841	0.5118	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-C01:02	QQPPRFWVL	0.6768	0.9805	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C04:03	FQPPRFWVL	0.6572	0.9661	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C18:01	FQPPRFWVL	0.6547	0.9661	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B57:04	SPFQPPRFW	0.6491	0.869	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B48:05	QQPPRFWVL	0.6476	0.5276	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C06:02	HSSPQPPRF	0.618	0.9919	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C06:17	HSSPQPPRF	0.618	0.9919	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C04:01	FQPPRFWVL	0.6036	0.9649	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B57:02	GIQQPPRFW	0.6022	0.9777	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C08:01	HSSPQPPRF	0.5827	0.9551	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B56:02	SPQPPRFWV	0.5749	0.6057	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C16:01	SSPFQPPRF	0.5748	0.9738	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C01:02	SSPFQPPRF	0.5734	0.9054	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B40:12	QQPPRFWVL	0.5574	0.8788	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B07:26	SPQPPRFWV	0.5371	0.6118	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B15:09	FQPPRFWVL	0.523	0.8579	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C01:03	SSPFQPPRF	0.4869	0.8155	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B57:02	SPFQPPRFW	0.4766	0.9448	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B40:21	FQPPRFWVL	0.4622	0.7345	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B40:21	QQPPRFWVL	0.4588	0.893	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B40:49	QQPPRFWVL	0.4546	0.8476	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B40:12	FQPPRFWVL	0.448	0.6912	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B15:09	QQPPRFWVL	0.4003	0.9615	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B40:49	FQPPRFWVL	0.3831	0.621	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-C16:02	SSPFQPPRF	0.3606	0.9915	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B82:02	SPQPPRFWV	0.3311	0.6266	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B07:13	FQPPRFWVL	0.3198	0.9221	12	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C02:02	HSSPQPPRF	0.3194	0.9712	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C02:10	HSSPQPPRF	0.3194	0.9712	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B67:01	SPQPPRFWV	0.308	0.9227	11	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B15:24	GIQQPPRFW	0.2957	0.9806	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C06:08	HSSPQPPRF	0.2656	0.9886	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C17:01	HSSPQPPRF	0.2517	0.7921	9	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B15:24	SSPQPPRFW	0.231	0.9255	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B18:07	SPFQPPRFW	0.1773	0.9366	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A25:01	SPFQPPRFW	0.0575	0.9182	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B35:43	SPFQPPRFW	0.0138	0.8919	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B15:11	SPFQPPRFW	0.0129	0.8962	10	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B57:10	HSSPQPPRFW	1	0.9602	9	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B57:10	HSSPFQPPRF	0.9999	0.9248	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B57:04	HSSPFQPPRF	0.9998	0.8951	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B58:06	HSSPFQPPRF	0.9998	0.7566	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B57:10	SSPFQPPRFW	0.9998	0.9742	9	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B57:04	HSSPQPPRFW	0.9997	0.8883	9	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B57:02	HSSPFQPPRF	0.9995	0.9391	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B58:06	HSSPQPPRFW	0.9992	0.8928	9	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B07:09	SPQPPRFWVL	0.9984	0.6561	11	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B07:22	SPQPPRFWVL	0.9983	0.7078	11	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B57:02	HSSPQPPRFW	0.9982	0.9534	9	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B57:04	SSPFQPPRFW	0.998	0.9088	9	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B44:26	GEGIQQPPRF	0.9953	0.8735	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B44:13	GEGIQQPPRF	0.9953	0.8735	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B44:07	GEGIQQPPRF	0.9953	0.8735	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B58:06	SSPFQPPRFW	0.9945	0.9348	9	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B38:05	THSSPQPPRF	0.9895	0.8724	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B57:02	SSPFQPPRFW	0.9887	0.955	9	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B57:04	THSSPQPPRF	0.9882	0.9238	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-A74:01	MTHSSPQPPR	0.9816	0.6471	7	17
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B58:06	THSSPQPPRF	0.9757	0.8849	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B15:73	IQQPPRFWVL	0.9754	0.9735	11	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B57:02	THSSPQPPRF	0.9731	0.9384	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B15:13	SSPFQPPRFW	0.9718	0.8027	9	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B15:30	IQQPPRFWVL	0.9592	0.9533	11	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B15:09	THSSPQPPRF	0.9564	0.8394	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B08:18	SPQPPRFWVL	0.946	0.6105	11	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B39:11	THSSPQPPRF	0.9369	0.736	8	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C01:02	SPQPPRFWVL	0.9282	0.9332	11	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B15:24	HSSPQPPRFW	0.8858	0.9425	9	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B08:12	SPQPPRFWVL	0.8652	0.7452	11	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B56:05	SPFQPPRFWV	0.7935	0.6377	10	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B67:01	SPQPPRFWVL	0.7802	0.843	11	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B35:13	SPQPPRFWVL	0.7656	0.7507	11	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B59:01	SPFQPPRFWV	0.7638	0.8107	10	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B55:02	SPFQPPRFWV	0.7539	0.7536	10	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B51:09	SPFQPPRFWV	0.7417	0.7528	10	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B51:13	SPFQPPRFWV	0.7228	0.6323	10	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B51:21	SPFQPPRFWV	0.7215	0.7137	10	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B40:12	IQQPPRFWVL	0.711	0.5469	11	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B51:14	SPFQPPRFWV	0.7036	0.6981	10	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B07:26	SPFQPPRFWV	0.7029	0.7152	10	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B55:04	SPFQPPRFWV	0.6918	0.8035	10	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B40:21	IQQPPRFWVL	0.6336	0.5963	11	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B35:09	SPQPPRFWVL	0.6104	0.8919	11	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B82:02	SPQPPRFWVL	0.5573	0.5917	11	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-A25:01	EGIQQPPRFW	0.4743	0.9198	9	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B57:10	MTHSSPQPPRF	1	0.966	7	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B57:10	HSSPFQPPRFW	1	0.9757	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B57:04	MTHSSPQPPRF	0.9999	0.8254	7	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B58:06	MTHSSPQPPRF	0.9999	0.9291	7	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B57:04	HSSPFQPPRFW	0.9999	0.9338	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B57:10	THSSPQPPRFW	0.9999	0.9567	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B44:22	GEGIQQPPRFW	0.9998	0.7706	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B44:07	GEGIQQPPRFW	0.9998	0.9804	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B58:06	HSSPFQPPRFW	0.9998	0.9286	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B44:13	GEGIQQPPRFW	0.9998	0.9804	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B44:26	GEGIQQPPRFW	0.9998	0.9804	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B57:02	MTHSSPQPPRF	0.9997	0.9461	7	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B57:04	THSSPQPPRFW	0.9997	0.9062	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-B44:21	GEGIQQPPRFW	0.9996	0.6373	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B57:02	HSSPFQPPRFW	0.9996	0.9777	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B07:22	SPFQPPRFWVL	0.9993	0.6798	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B38:05	THSSPFQPPRF	0.9992	0.8787	7	18
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B07:09	SPFQPPRFWVL	0.9992	0.6842	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B58:06	THSSPQPPRFW	0.999	0.9321	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A32:01	HSSPFQPPRFW	0.999	0.9828	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B15:13	HSSPFQPPRFW	0.9984	0.8897	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C01:02	SSPQPPRFWVL	0.9937	0.9287	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-A74:01	MTHSSPFQPPR	0.9925	0.7177	6	17
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B57:10	HSSPQPPRFWV	0.9899	0.9705	9	20
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-A74:01	KMTHSSPQPPR	0.9887	0.8985	6	17
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B55:04	SPFQPPRFWVL	0.9839	0.6144	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B07:22	SPQPPRFWVLR	0.9823	0.785	11	22
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B08:18	SPFQPPRFWVL	0.9807	0.8056	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	3865	HLA-A74:01	IQQPPRFWVLR	0.9806	0.9562	11	22
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B38:05	THSSPQPPRFW	0.9803	0.9746	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-C01:03	SSPQPPRFWVL	0.9742	0.8851	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B07:26	SPFQPPRFWVL	0.9705	0.5562	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B53:02	HSSPFQPPRFW	0.9638	0.5145	8	19
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B35:13	SPFQPPRFWVL	0.96	0.938	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B35:22	SPFQPPRFWVL	0.947	0.6124	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B56:02	SPFQPPRFWVL	0.945	0.5486	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B35:30	SPFQPPRFWVL	0.9293	0.8414	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B35:17	SPFQPPRFWVL	0.9293	0.8414	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B08:12	SPFQPPRFWVL	0.9239	0.906	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B67:01	SPFQPPRFWVL	0.9118	0.9472	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4133	HLA-B07:22	SSPQPPRFWVL	0.8983	0.6766	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B51:14	SPFQPPRFWVL	0.8983	0.5015	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B35:09	SPFQPPRFWVL	0.8571	0.978	10	21
TTC21A-SALL2	chr3	39180277	chr14	21993571	4182	HLA-B82:02	SPFQPPRFWVL	0.7857	0.6688	10	21

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Potential FusionNeoAntigen Information of TTC21A-SALL2 in HLA II

Potential FusionNeoAntigen Information
* We used NetMHCIIpan v4.1 (%rank<0.5).

Fusion gene

Hchr

Hbp

Tgene

Tchr

Tbp

HLA II

FusionNeoAntigen peptide

Neoantigen start (at BP 13)

Neoantigen end (at BP 13)

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Fusion breakpoint peptide structures of TTC21A-SALL2

3D structures of the fusion breakpoint peptide of 14AA sequence that have potential fusion neoantigens
* The minimum length of the amino acid sequence in RoseTTAFold is 14AA. Here, we predicted the 14AA fusion protein breakpoint sequence not the fusion neoantigen peptide, which is shorter than 14 AA.

File name	BPseq	Hgene	Tgene	Hchr	Hbp	Tchr	Tbp	AAlen
4439	KMTHSSPQPPRFWV	TTC21A	SALL2	chr3	39180277	chr14	21993571	4133

File name	BPseq	Hgene	Tgene	Hchr	Hbp	Tchr	Tbp	AAlen
6033	MTHSSPFQPPRFWV	TTC21A	SALL2	chr3	39180277	chr14	21993571	4182

File name	BPseq	Hgene	Tgene	Hchr	Hbp	Tchr	Tbp	AAlen
10263	VSGEGIQQPPRFWV	TTC21A	SALL2	chr3	39180277	chr14	21993571	3865

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Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D of TTC21A-SALL2

Virtual screening between 25 HLAs (from PDB) and FusionNeoAntigens
* We used Glide to predict the interaction between HLAs and neoantigens.

HLA allele	PDB ID	File name	BPseq	Docking score	Glide score
HLA-B14:02	3BVN	4439	KMTHSSPQPPRFWV	-7.9962	-8.1096
HLA-B14:02	3BVN	4439	KMTHSSPQPPRFWV	-5.70842	-6.74372
HLA-B52:01	3W39	4439	KMTHSSPQPPRFWV	-6.83737	-6.95077
HLA-B52:01	3W39	4439	KMTHSSPQPPRFWV	-4.4836	-5.5189
HLA-A11:01	4UQ2	4439	KMTHSSPQPPRFWV	-10.0067	-10.1201
HLA-A11:01	4UQ2	4439	KMTHSSPQPPRFWV	-9.03915	-10.0745
HLA-A24:02	5HGA	4439	KMTHSSPQPPRFWV	-6.56204	-6.67544
HLA-A24:02	5HGA	4439	KMTHSSPQPPRFWV	-5.42271	-6.45801
HLA-B44:05	3DX8	4439	KMTHSSPQPPRFWV	-7.85648	-8.89178
HLA-B44:05	3DX8	4439	KMTHSSPQPPRFWV	-5.3978	-5.5112
HLA-A02:01	6TDR	4439	KMTHSSPQPPRFWV	-3.37154	-4.40684
HLA-B52:01	3W39	6033	MTHSSPFQPPRFWV	-6.65674	-6.65674
HLA-B44:05	3DX8	6033	MTHSSPFQPPRFWV	-6.36866	-6.36866
HLA-B14:02	3BVN	10263	VSGEGIQQPPRFWV	-7.38756	-7.50096
HLA-B14:02	3BVN	10263	VSGEGIQQPPRFWV	-6.17376	-7.20906
HLA-B52:01	3W39	10263	VSGEGIQQPPRFWV	-6.82178	-6.93518
HLA-B52:01	3W39	10263	VSGEGIQQPPRFWV	-5.12185	-6.15715
HLA-A11:01	4UQ2	10263	VSGEGIQQPPRFWV	-9.73713	-9.85053
HLA-A24:02	5HGA	10263	VSGEGIQQPPRFWV	-6.9463	-7.0597
HLA-A24:02	5HGA	10263	VSGEGIQQPPRFWV	-5.98739	-7.02269
HLA-B44:05	3DX8	10263	VSGEGIQQPPRFWV	-5.60116	-6.63646
HLA-B44:05	3DX8	10263	VSGEGIQQPPRFWV	-4.76903	-4.88243
HLA-B35:01	1A1N	10263	VSGEGIQQPPRFWV	-5.57109	-5.68449
HLA-B35:01	1A1N	10263	VSGEGIQQPPRFWV	-3.51702	-4.55232

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Vaccine Design for the FusionNeoAntigens of TTC21A-SALL2

mRNA and peptide sequences of FusionNeoAntigens that have potential interaction with HLA-Is.

Fusion gene	Hchr	Hbp	Tchr	Tbp	Start in +/-13AA	End in +/-13AA	FusionNeoAntigen peptide sequence	FusionNeoAntigen RNA sequence
TTC21A-SALL2	chr3	39180277	chr14	21993571	10	18	SPFQPPRF	TCCCCATTTCAACCCCCCAGATTC
TTC21A-SALL2	chr3	39180277	chr14	21993571	10	18	SSPQPPRF	TCTTCCCCACAACCCCCCAGATTC
TTC21A-SALL2	chr3	39180277	chr14	21993571	10	19	GIQQPPRFW	GGGATTCAGCAACCCCCCAGATTCTGG
TTC21A-SALL2	chr3	39180277	chr14	21993571	10	19	SPFQPPRFW	TCCCCATTTCAACCCCCCAGATTCTGG
TTC21A-SALL2	chr3	39180277	chr14	21993571	10	19	SSPQPPRFW	TCTTCCCCACAACCCCCCAGATTCTGG
TTC21A-SALL2	chr3	39180277	chr14	21993571	10	20	SPFQPPRFWV	TCCCCATTTCAACCCCCCAGATTCTGGGTC
TTC21A-SALL2	chr3	39180277	chr14	21993571	10	21	SPFQPPRFWVL	TCCCCATTTCAACCCCCCAGATTCTGGGTCCTC
TTC21A-SALL2	chr3	39180277	chr14	21993571	10	21	SSPQPPRFWVL	TCTTCCCCACAACCCCCCAGATTCTGGGTCCTC
TTC21A-SALL2	chr3	39180277	chr14	21993571	11	19	IQQPPRFW	ATTCAGCAACCCCCCAGATTCTGG
TTC21A-SALL2	chr3	39180277	chr14	21993571	11	19	PFQPPRFW	CCATTTCAACCCCCCAGATTCTGG
TTC21A-SALL2	chr3	39180277	chr14	21993571	11	20	IQQPPRFWV	ATTCAGCAACCCCCCAGATTCTGGGTC
TTC21A-SALL2	chr3	39180277	chr14	21993571	11	20	SPQPPRFWV	TCCCCACAACCCCCCAGATTCTGGGTC
TTC21A-SALL2	chr3	39180277	chr14	21993571	11	21	IQQPPRFWVL	ATTCAGCAACCCCCCAGATTCTGGGTCCTC
TTC21A-SALL2	chr3	39180277	chr14	21993571	11	21	SPQPPRFWVL	TCCCCACAACCCCCCAGATTCTGGGTCCTC
TTC21A-SALL2	chr3	39180277	chr14	21993571	11	22	IQQPPRFWVLR	ATTCAGCAACCCCCCAGATTCTGGGTCCTCCGT
TTC21A-SALL2	chr3	39180277	chr14	21993571	11	22	SPQPPRFWVLR	TCCCCACAACCCCCCAGATTCTGGGTCCTCCGT
TTC21A-SALL2	chr3	39180277	chr14	21993571	12	21	FQPPRFWVL	TTTCAACCCCCCAGATTCTGGGTCCTC
TTC21A-SALL2	chr3	39180277	chr14	21993571	12	21	PQPPRFWVL	CCACAACCCCCCAGATTCTGGGTCCTC
TTC21A-SALL2	chr3	39180277	chr14	21993571	12	21	QQPPRFWVL	CAGCAACCCCCCAGATTCTGGGTCCTC
TTC21A-SALL2	chr3	39180277	chr14	21993571	6	17	KMTHSSPQPPR	AAAATGACACATTCTTCCCCACAACCCCCCAGA
TTC21A-SALL2	chr3	39180277	chr14	21993571	6	17	MTHSSPFQPPR	ATGACACATTCTTCCCCATTTCAACCCCCCAGA
TTC21A-SALL2	chr3	39180277	chr14	21993571	7	16	THSSPFQPP	ACACATTCTTCCCCATTTCAACCCCCC
TTC21A-SALL2	chr3	39180277	chr14	21993571	7	17	MTHSSPQPPR	ATGACACATTCTTCCCCACAACCCCCCAGA
TTC21A-SALL2	chr3	39180277	chr14	21993571	7	18	MTHSSPQPPRF	ATGACACATTCTTCCCCACAACCCCCCAGATTC
TTC21A-SALL2	chr3	39180277	chr14	21993571	7	18	THSSPFQPPRF	ACACATTCTTCCCCATTTCAACCCCCCAGATTC
TTC21A-SALL2	chr3	39180277	chr14	21993571	8	17	HSSPFQPPR	CATTCTTCCCCATTTCAACCCCCCAGA
TTC21A-SALL2	chr3	39180277	chr14	21993571	8	18	GEGIQQPPRF	GGAGAAGGGATTCAGCAACCCCCCAGATTC
TTC21A-SALL2	chr3	39180277	chr14	21993571	8	18	HSSPFQPPRF	CATTCTTCCCCATTTCAACCCCCCAGATTC
TTC21A-SALL2	chr3	39180277	chr14	21993571	8	18	THSSPQPPRF	ACACATTCTTCCCCACAACCCCCCAGATTC
TTC21A-SALL2	chr3	39180277	chr14	21993571	8	19	GEGIQQPPRFW	GGAGAAGGGATTCAGCAACCCCCCAGATTCTGG
TTC21A-SALL2	chr3	39180277	chr14	21993571	8	19	HSSPFQPPRFW	CATTCTTCCCCATTTCAACCCCCCAGATTCTGG
TTC21A-SALL2	chr3	39180277	chr14	21993571	8	19	THSSPQPPRFW	ACACATTCTTCCCCACAACCCCCCAGATTCTGG
TTC21A-SALL2	chr3	39180277	chr14	21993571	9	18	HSSPQPPRF	CATTCTTCCCCACAACCCCCCAGATTC
TTC21A-SALL2	chr3	39180277	chr14	21993571	9	18	SSPFQPPRF	TCTTCCCCATTTCAACCCCCCAGATTC
TTC21A-SALL2	chr3	39180277	chr14	21993571	9	19	EGIQQPPRFW	GAAGGGATTCAGCAACCCCCCAGATTCTGG
TTC21A-SALL2	chr3	39180277	chr14	21993571	9	19	HSSPQPPRFW	CATTCTTCCCCACAACCCCCCAGATTCTGG
TTC21A-SALL2	chr3	39180277	chr14	21993571	9	19	SSPFQPPRFW	TCTTCCCCATTTCAACCCCCCAGATTCTGG
TTC21A-SALL2	chr3	39180277	chr14	21993571	9	20	HSSPQPPRFWV	CATTCTTCCCCACAACCCCCCAGATTCTGGGTC

mRNA and peptide sequences of FusionNeoAntigens that have potential interaction with HLA-IIs.

Fusion gene

Hchr

Hbp

Tchr

Tbp

Start in +/-13AA

End in +/-13AA

FusionNeoAntigen peptide

FusionNEoAntigen RNA sequence

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Information of the samples that have these potential fusion neoantigens of TTC21A-SALL2

These samples were reported as having these fusion breakpoints. For individual breakpoints, we checked the open reading frames considering multiple gene isoforms and chose the in-frame fusion genes only. Then, we made fusion protein sequences and predicted the fusion neoantigens. These fusion-positive samples may have these potential fusion neoantigens.

Cancer type	Fusion gene	Hchr	Hbp	Henst	Tchr	Tbp	Tenst	Sample
N/A	TTC21A-SALL2	chr3	39180277	ENST00000301819	chr14	21993571	ENST00000327430	AW450316
N/A	TTC21A-SALL2	chr3	39180277	ENST00000431162	chr14	21993571	ENST00000327430	AW450316
N/A	TTC21A-SALL2	chr3	39180277	ENST00000440121	chr14	21993571	ENST00000327430	AW450316

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Potential target of CAR-T therapy development for TTC21A-SALL2

Predicted 3D structure. We used RoseTTAFold.

Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, to provide the retention of the transmembrane domain, we only show the protein feature retention information of those transmembrane features

* Minus value of BPloci means that the break point is located before the CDS.

- In-frame and retained 'Transmembrane'.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Protein feature

Protein feature note

Subcellular localization prediction of the transmembrane domain retained fusion proteins
* We used DeepLoc 1.0. The order of the X-axis of the barplot is as follows: Entry_ID, Localization, Type, Nucleus, Cytoplasm, Extracellular, Mitochondrion, Cell_membrane, Endoplasmic_reticulum, Plastid, Golgi.apparatus, Lysosome.Vacuole, Peroxisome. Y-axis is the output score of DeepLoc. Clicking the image will open a new tab with a large image.

Hgene

Hchr

Hbp

Henst

Tgene

Tchr

Tbp

Tenst

DeepLoc result

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Related Drugs to TTC21A-SALL2

Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)

Hgene

Tgene

Drug

Source

PMID

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Related Diseases to TTC21A-SALL2

Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)

Hgene

Tgene

Disease

Source

PMID

Diseases associated with fusion partners.
(DisGeNet 4.0)

Partner

Gene

Disease ID

Disease name

# pubmeds

Source

	Fusion Gene and Fusion Protein Summary
	Fusion Amino Acid Sequences (multiple BPs and multiple gene isoforms)
	Fusion Protein Breakpoint Sequences - (for the Screening of the FusionNeoAntigens)
	Potential FusionNeoAntigens in HLA I - (netMHCpan v4.1 + deepHLApan v1.1)
	Potential FusionNeoAntigens in HLA II - (netMHCIIpan v4.1)
	Fusion Breakpoint 14 AA Peptide Structure - (RoseTTAFold)
	Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D - (Glide)
	Vaccine Design for the FusionNeoAntigens (RNA/protein sequences)
	Potential target of CAR-T therapy development
	Information on the samples that have these potential fusion neoantigens
	Fusion Protein Targeting Drugs - (Manual Curation)
	Fusion Protein Related diseases - (Manual Curation)