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Fusion Protein:BMPR2-ATG4B |
Fusion Gene and Fusion Protein Summary |
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Fusion partner gene information | Fusion gene name: BMPR2-ATG4B | FusionPDB ID: 9922 | FusionGDB2.0 ID: 9922 | Hgene | Tgene | Gene symbol | BMPR2 | ATG4B | Gene ID | 659 | 23192 |
Gene name | bone morphogenetic protein receptor type 2 | autophagy related 4B cysteine peptidase | |
Synonyms | BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK | APG4B|AUTL1 | |
Cytomap | 2q33.1-q33.2 | 2q37.3 | |
Type of gene | protein-coding | protein-coding | |
Description | bone morphogenetic protein receptor type-2BMP type II receptorBMP type-2 receptorbone morphogenetic protein receptor type IIbone morphogenetic protein receptor, type II (serine/threonine kinase)type II activin receptor-like kinasetype II receptor fo | cysteine protease ATG4BAPG4 autophagy 4 homolog BATG4 autophagy related 4 homolog BAUT-like 1 cysteine endopeptidaseautophagin-1autophagy-related cysteine endopeptidase 1autophagy-related protein 4 homolog BhAPG4B | |
Modification date | 20200313 | 20200329 | |
UniProtAcc | Q13873 Main function of 5'-partner protein: FUNCTION: On ligand binding, forms a receptor complex consisting of two type II and two type I transmembrane serine/threonine kinases. Type II receptors phosphorylate and activate type I receptors which autophosphorylate, then bind and activate SMAD transcriptional regulators. Binds to BMP7, BMP2 and, less efficiently, BMP4. Binding is weak but enhanced by the presence of type I receptors for BMPs. Mediates induction of adipogenesis by GDF6. {ECO:0000250|UniProtKB:O35607}. | Q9Y4P1 Main function of 5'-partner protein: FUNCTION: Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy. Cleaves the C-terminal amino acid of ATG8 family proteins MAP1LC3, GABARAPL1, GABARAPL2 and GABARAP, to reveal a C-terminal glycine. Exposure of the glycine at the C-terminus is essential for ATG8 proteins conjugation to phosphatidylethanolamine (PE) and insertion to membranes, which is necessary for autophagy. Has also an activity of delipidating enzyme for the PE-conjugated forms. {ECO:0000269|PubMed:15169837, ECO:0000269|PubMed:15187094, ECO:0000269|PubMed:17347651, ECO:0000269|PubMed:19322194, ECO:0000269|PubMed:21177865, ECO:0000269|PubMed:22302004}. | |
Ensembl transtripts involved in fusion gene | ENST ids | ENST00000479069, ENST00000374574, ENST00000374580, | ENST00000405546, ENST00000491867, ENST00000396411, ENST00000402096, ENST00000404914, ENST00000474739, |
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0) | * DoF score | 20 X 12 X 9=2160 | 4 X 4 X 3=48 |
# samples | 21 | 5 | |
** MAII score | log2(21/2160*10)=-3.36257007938471 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(5/48*10)=0.0588936890535686 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Fusion gene context | PubMed: BMPR2 [Title/Abstract] AND ATG4B [Title/Abstract] AND fusion [Title/Abstract] | ||
Fusion neoantigen context | PubMed: BMPR2 [Title/Abstract] AND ATG4B [Title/Abstract] AND neoantigen [Title/Abstract] | ||
Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0) | BMPR2(203332412)-ATG4B(242590425), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | BMPR2-ATG4B seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. BMPR2-ATG4B seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | BMPR2 | GO:0007178 | transmembrane receptor protein serine/threonine kinase signaling pathway | 12045205 |
Hgene | BMPR2 | GO:0010634 | positive regulation of epithelial cell migration | 12819188 |
Hgene | BMPR2 | GO:0030308 | negative regulation of cell growth | 12819188 |
Hgene | BMPR2 | GO:0030509 | BMP signaling pathway | 18436533 |
Tgene | ATG4B | GO:0006508 | proteolysis | 15169837|18387192 |
Tgene | ATG4B | GO:0006914 | autophagy | 18387192 |
Tgene | ATG4B | GO:0051697 | protein delipidation | 25327288 |
![]() Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr2:203332412/chr2:242590425) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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![]() * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Fusion Amino Acid Sequences |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000374580 | BMPR2 | chr2 | 203332412 | - | ENST00000405546 | ATG4B | chr2 | 242590425 | + | 3739 | 957 | 524 | 2089 | 521 |
ENST00000374574 | BMPR2 | chr2 | 203332412 | - | ENST00000405546 | ATG4B | chr2 | 242590425 | + | 3241 | 459 | 26 | 1591 | 521 |
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Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000374580 | ENST00000405546 | BMPR2 | chr2 | 203332412 | - | ATG4B | chr2 | 242590425 | + | 0.011874816 | 0.9881252 |
ENST00000374574 | ENST00000405546 | BMPR2 | chr2 | 203332412 | - | ATG4B | chr2 | 242590425 | + | 0.010126697 | 0.9898733 |
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Get the fusion protein sequences from here. |
Fusion protein sequence information is available in the fasta format. >FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP |
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Fusion Protein Breakpoint Sequences for BMPR2-ATG4B |
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Hgene | Hchr | Hbp | Tgene | Tchr | Tbp | Length(fusion protein) | BP in fusion protein | Peptide |
BMPR2 | chr2 | 203332412 | ATG4B | chr2 | 242590425 | 459 | 24 | RPWRVPWLPWTILLVSTAAASQNQER |
BMPR2 | chr2 | 203332412 | ATG4B | chr2 | 242590425 | 957 | 24 | RPWRVPWLPWTILLVSTAAASQNQER |
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Potential FusionNeoAntigen Information of BMPR2-ATG4B in HLA I |
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BMPR2-ATG4B_203332412_242590425.msa |
![]() * We used NetMHCpan v4.1 (%rank<0.5) and deepHLApan v1.1 (immunogenic score>0.5) |
Fusion gene | Hchr | Hbp | Tgene | Tchr | Tbp | HLA I | FusionNeoAntigen peptide | Binding score | Immunogenic score | Neoantigen start (at BP 13) | Neoantigen end (at BP 13) |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | HLA-B35:03 | VPWLPWTILL | 0.9167 | 0.8092 | 4 | 14 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | HLA-B81:01 | VPWLPWTILL | 0.7556 | 0.5415 | 4 | 14 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | HLA-B42:01 | VPWLPWTILL | 0.7395 | 0.803 | 4 | 14 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | HLA-A32:01 | RVPWLPWTILL | 0.9701 | 0.9261 | 3 | 14 |
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Potential FusionNeoAntigen Information of BMPR2-ATG4B in HLA II |
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BMPR2-ATG4B_203332412_242590425.msa |
![]() * We used NetMHCIIpan v4.1 (%rank<0.5). |
Fusion gene | Hchr | Hbp | Tgene | Tchr | Tbp | HLA II | FusionNeoAntigen peptide | Neoantigen start (at BP 13) | Neoantigen end (at BP 13) |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0403 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0413 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0415 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0415 | LPWTILLVSTAAASQ | 7 | 22 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0419 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0427 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0431 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0436 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0436 | LPWTILLVSTAAASQ | 7 | 22 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0439 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0440 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0440 | LPWTILLVSTAAASQ | 7 | 22 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0441 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0442 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0442 | LPWTILLVSTAAASQ | 7 | 22 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0443 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0444 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0444 | LPWTILLVSTAAASQ | 7 | 22 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0446 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0449 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0449 | LPWTILLVSTAAASQ | 7 | 22 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0450 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0451 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0452 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0453 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0453 | LPWTILLVSTAAASQ | 7 | 22 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0454 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0455 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0455 | LPWTILLVSTAAASQ | 7 | 22 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0456 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0456 | LPWTILLVSTAAASQ | 7 | 22 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0458 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0458 | LPWTILLVSTAAASQ | 7 | 22 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0459 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0460 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0461 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0465 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0468 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0468 | LPWTILLVSTAAASQ | 7 | 22 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0470 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0470 | LPWTILLVSTAAASQ | 7 | 22 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0471 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0473 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0478 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0478 | LPWTILLVSTAAASQ | 7 | 22 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0479 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0479 | LPWTILLVSTAAASQ | 7 | 22 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0485 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0488 | PWTILLVSTAAASQN | 8 | 23 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-0488 | LPWTILLVSTAAASQ | 7 | 22 |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 | DRB1-1410 | PWTILLVSTAAASQN | 8 | 23 |
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Fusion breakpoint peptide structures of BMPR2-ATG4B |
![]() * The minimum length of the amino acid sequence in RoseTTAFold is 14AA. Here, we predicted the 14AA fusion protein breakpoint sequence not the fusion neoantigen peptide, which is shorter than 14 AA. |
File name | BPseq | Hgene | Tgene | Hchr | Hbp | Tchr | Tbp | AAlen |
10505 | WLPWTILLVSTAAA | BMPR2 | ATG4B | chr2 | 203332412 | chr2 | 242590425 | 459 |
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Filtering FusionNeoAntigens Through Checking the Interaction with HLAs in 3D of BMPR2-ATG4B |
![]() * We used Glide to predict the interaction between HLAs and neoantigens. |
HLA allele | PDB ID | File name | BPseq | Docking score | Glide score |
HLA-B52:01 | 3W39 | 10505 | WLPWTILLVSTAAA | -5.00688 | -5.00688 |
HLA-B44:05 | 3DX8 | 10505 | WLPWTILLVSTAAA | -7.62168 | -7.62168 |
HLA-A02:01 | 6TDR | 10505 | WLPWTILLVSTAAA | -0.491095 | -0.491095 |
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Vaccine Design for the FusionNeoAntigens of BMPR2-ATG4B |
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Fusion gene | Hchr | Hbp | Tchr | Tbp | Start in +/-13AA | End in +/-13AA | FusionNeoAntigen peptide sequence | FusionNeoAntigen RNA sequence |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 3 | 14 | RVPWLPWTILL | ATTTTCCACCTCCTGACACAACACCACTCACTA |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 4 | 14 | VPWLPWTILL | TTCCACCTCCTGACACAACACCACTCACTA |
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Fusion gene | Hchr | Hbp | Tchr | Tbp | Start in +/-13AA | End in +/-13AA | FusionNeoAntigen peptide | FusionNEoAntigen RNA sequence |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 7 | 22 | LPWTILLVSTAAASQ | CTGACACAACACCACTCACTACTCTGACCTACGACACTCTCCGGT |
BMPR2-ATG4B | chr2 | 203332412 | chr2 | 242590425 | 8 | 23 | PWTILLVSTAAASQN | ACACAACACCACTCACTACTCTGACCTACGACACTCTCCGGTTTG |
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Information of the samples that have these potential fusion neoantigens of BMPR2-ATG4B |
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Cancer type | Fusion gene | Hchr | Hbp | Henst | Tchr | Tbp | Tenst | Sample |
LUSC | BMPR2-ATG4B | chr2 | 203332412 | ENST00000374574 | chr2 | 242590425 | ENST00000405546 | TCGA-63-6202-01A |
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Potential target of CAR-T therapy development for BMPR2-ATG4B |
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![]() * Minus value of BPloci means that the break point is located before the CDS. |
- In-frame and retained 'Transmembrane'. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
![]() * We used DeepLoc 1.0. The order of the X-axis of the barplot is as follows: Entry_ID, Localization, Type, Nucleus, Cytoplasm, Extracellular, Mitochondrion, Cell_membrane, Endoplasmic_reticulum, Plastid, Golgi.apparatus, Lysosome.Vacuole, Peroxisome. Y-axis is the output score of DeepLoc. Clicking the image will open a new tab with a large image. |
Hgene | Hchr | Hbp | Henst | Tgene | Tchr | Tbp | Tenst | DeepLoc result |
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Related Drugs to BMPR2-ATG4B |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Drug | Source | PMID |
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Related Diseases to BMPR2-ATG4B |
![]() (Manual curation of PubMed, 04-30-2022 + MyCancerGenome) |
Hgene | Tgene | Disease | Source | PMID |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |