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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>10138_10138_1_BRAP-ATXN2_BRAP_chr12_112120950_ENST00000327551_ATXN2_chr12_111895163_ENST00000377617_length(amino acids)=252AA_BP=8
MLPRKTRRAGEMSDEEIKKTTLASAVACLEGKSPGEKVAIIHQHLGRREMTDVIIETMKSNPVSTGSLAQQYAHPNATLHPHTPHPQPSA
TPTGQQQSQHGGSHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQNSFPAAQQTVFTIHPSHVQPAYTNPP

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>10138_10138_2_BRAP-ATXN2_BRAP_chr12_112120950_ENST00000327551_ATXN2_chr12_111895163_ENST00000389153_length(amino acids)=252AA_BP=8
MLPRKTRRAGEMSDEEIKKTTLASAVACLEGKSPGEKVAIIHQHLGRREMTDVIIETMKSNPVSTGSLAQQYAHPNATLHPHTPHPQPSA
TPTGQQQSQHGGSHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQNSFPAAQQTVFTIHPSHVQPAYTNPP

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>10138_10138_3_BRAP-ATXN2_BRAP_chr12_112120950_ENST00000327551_ATXN2_chr12_111895163_ENST00000608853_length(amino acids)=252AA_BP=8
MLPRKTRRAGEMSDEEIKKTTLASAVACLEGKSPGEKVAIIHQHLGRREMTDVIIETMKSNPVSTGSLAQQYAHPNATLHPHTPHPQPSA
TPTGQQQSQHGGSHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQNSFPAAQQTVFTIHPSHVQPAYTNPP

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>10138_10138_4_BRAP-ATXN2_BRAP_chr12_112120950_ENST00000327551_ATXN2_chr12_111902519_ENST00000377617_length(amino acids)=270AA_BP=8
MLPRKTRRAGEMSDEEIKKTTLASAVACLEGKSPGEKVAIIHQHLGRREMTDVIIETMKSNPACPKLPYNKETSPSFYFAISTGSLAQQY
AHPNATLHPHTPHPQPSATPTGQQQSQHGGSHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQNSFPAAQQ
TVFTIHPSHVQPAYTNPPHMAHVPQAHVQSGMVPSHPTAHAPMMLMTTQPPGGPQAALAQSALQPIPVSTTAHFPYMTHPSVQAHHQQQL

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>10138_10138_5_BRAP-ATXN2_BRAP_chr12_112120950_ENST00000327551_ATXN2_chr12_111902519_ENST00000389153_length(amino acids)=270AA_BP=8
MLPRKTRRAGEMSDEEIKKTTLASAVACLEGKSPGEKVAIIHQHLGRREMTDVIIETMKSNPACPKLPYNKETSPSFYFAISTGSLAQQY
AHPNATLHPHTPHPQPSATPTGQQQSQHGGSHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQNSFPAAQQ
TVFTIHPSHVQPAYTNPPHMAHVPQAHVQSGMVPSHPTAHAPMMLMTTQPPGGPQAALAQSALQPIPVSTTAHFPYMTHPSVQAHHQQQL

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>10138_10138_6_BRAP-ATXN2_BRAP_chr12_112120950_ENST00000327551_ATXN2_chr12_111902519_ENST00000608853_length(amino acids)=270AA_BP=8
MLPRKTRRAGEMSDEEIKKTTLASAVACLEGKSPGEKVAIIHQHLGRREMTDVIIETMKSNPACPKLPYNKETSPSFYFAISTGSLAQQY
AHPNATLHPHTPHPQPSATPTGQQQSQHGGSHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQNSFPAAQQ
TVFTIHPSHVQPAYTNPPHMAHVPQAHVQSGMVPSHPTAHAPMMLMTTQPPGGPQAALAQSALQPIPVSTTAHFPYMTHPSVQAHHQQQL

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>10138_10138_7_BRAP-ATXN2_BRAP_chr12_112120950_ENST00000419234_ATXN2_chr12_111895163_ENST00000377617_length(amino acids)=300AA_BP=1
MPAPGRSASRLAFQPRLSPPGPAPASACPMSVSLVVIRLELAEHSPVPAGFGFSAAAGEMSDEEIKKTTLASAVACLEGKSPGEKVAIIH
QHLGRREMTDVIIETMKSNPVSTGSLAQQYAHPNATLHPHTPHPQPSATPTGQQQSQHGGSHPAPSPVQHHQHQAAQALHLASPQQQSAI
YHAGLAPTPPSMTPASNTQSPQNSFPAAQQTVFTIHPSHVQPAYTNPPHMAHVPQAHVQSGMVPSHPTAHAPMMLMTTQPPGGPQAALAQ

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>10138_10138_8_BRAP-ATXN2_BRAP_chr12_112120950_ENST00000419234_ATXN2_chr12_111895163_ENST00000389153_length(amino acids)=300AA_BP=1
MPAPGRSASRLAFQPRLSPPGPAPASACPMSVSLVVIRLELAEHSPVPAGFGFSAAAGEMSDEEIKKTTLASAVACLEGKSPGEKVAIIH
QHLGRREMTDVIIETMKSNPVSTGSLAQQYAHPNATLHPHTPHPQPSATPTGQQQSQHGGSHPAPSPVQHHQHQAAQALHLASPQQQSAI
YHAGLAPTPPSMTPASNTQSPQNSFPAAQQTVFTIHPSHVQPAYTNPPHMAHVPQAHVQSGMVPSHPTAHAPMMLMTTQPPGGPQAALAQ

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>10138_10138_9_BRAP-ATXN2_BRAP_chr12_112120950_ENST00000419234_ATXN2_chr12_111895163_ENST00000608853_length(amino acids)=300AA_BP=1
MPAPGRSASRLAFQPRLSPPGPAPASACPMSVSLVVIRLELAEHSPVPAGFGFSAAAGEMSDEEIKKTTLASAVACLEGKSPGEKVAIIH
QHLGRREMTDVIIETMKSNPVSTGSLAQQYAHPNATLHPHTPHPQPSATPTGQQQSQHGGSHPAPSPVQHHQHQAAQALHLASPQQQSAI
YHAGLAPTPPSMTPASNTQSPQNSFPAAQQTVFTIHPSHVQPAYTNPPHMAHVPQAHVQSGMVPSHPTAHAPMMLMTTQPPGGPQAALAQ

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>10138_10138_10_BRAP-ATXN2_BRAP_chr12_112120950_ENST00000419234_ATXN2_chr12_111902519_ENST00000377617_length(amino acids)=318AA_BP=1
MPAPGRSASRLAFQPRLSPPGPAPASACPMSVSLVVIRLELAEHSPVPAGFGFSAAAGEMSDEEIKKTTLASAVACLEGKSPGEKVAIIH
QHLGRREMTDVIIETMKSNPACPKLPYNKETSPSFYFAISTGSLAQQYAHPNATLHPHTPHPQPSATPTGQQQSQHGGSHPAPSPVQHHQ
HQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQNSFPAAQQTVFTIHPSHVQPAYTNPPHMAHVPQAHVQSGMVPSHPTAHAP

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>10138_10138_11_BRAP-ATXN2_BRAP_chr12_112120950_ENST00000419234_ATXN2_chr12_111902519_ENST00000389153_length(amino acids)=318AA_BP=1
MPAPGRSASRLAFQPRLSPPGPAPASACPMSVSLVVIRLELAEHSPVPAGFGFSAAAGEMSDEEIKKTTLASAVACLEGKSPGEKVAIIH
QHLGRREMTDVIIETMKSNPACPKLPYNKETSPSFYFAISTGSLAQQYAHPNATLHPHTPHPQPSATPTGQQQSQHGGSHPAPSPVQHHQ
HQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQNSFPAAQQTVFTIHPSHVQPAYTNPPHMAHVPQAHVQSGMVPSHPTAHAP

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>10138_10138_12_BRAP-ATXN2_BRAP_chr12_112120950_ENST00000419234_ATXN2_chr12_111902519_ENST00000608853_length(amino acids)=318AA_BP=1
MPAPGRSASRLAFQPRLSPPGPAPASACPMSVSLVVIRLELAEHSPVPAGFGFSAAAGEMSDEEIKKTTLASAVACLEGKSPGEKVAIIH
QHLGRREMTDVIIETMKSNPACPKLPYNKETSPSFYFAISTGSLAQQYAHPNATLHPHTPHPQPSATPTGQQQSQHGGSHPAPSPVQHHQ
HQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQNSFPAAQQTVFTIHPSHVQPAYTNPPHMAHVPQAHVQSGMVPSHPTAHAP

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