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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>12869_12869_1_CAPN1-TNKS1BP1_CAPN1_chr11_64951063_ENST00000279247_TNKS1BP1_chr11_57068515_ENST00000358252_length(amino acids)=243AA_BP=172
MVGPCPELPPGSQPQGLQRPPNTPPPGCRRRSSRRCTALGCQPKCRSSGPGSWAWAAMRMPSSTWARIMSSCGCDACRVGPSSVMRPSPR
YPRAWVTRTWVPIPPRPMASSGSVPRNCCQTPSSLWMELPAQTSAREHWGTAGSWRPSPPSLSTTPSCTEWFRTARASRMAMPASSISRP

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>12869_12869_2_CAPN1-TNKS1BP1_CAPN1_chr11_64951063_ENST00000279247_TNKS1BP1_chr11_57068515_ENST00000532437_length(amino acids)=243AA_BP=172
MVGPCPELPPGSQPQGLQRPPNTPPPGCRRRSSRRCTALGCQPKCRSSGPGSWAWAAMRMPSSTWARIMSSCGCDACRVGPSSVMRPSPR
YPRAWVTRTWVPIPPRPMASSGSVPRNCCQTPSSLWMELPAQTSAREHWGTAGSWRPSPPSLSTTPSCTEWFRTARASRMAMPASSISRP

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>12869_12869_3_CAPN1-TNKS1BP1_CAPN1_chr11_64951063_ENST00000524773_TNKS1BP1_chr11_57068515_ENST00000358252_length(amino acids)=224AA_BP=151
MSEEIITPVYCTGVSAQVQKQRARELGLGRHENAIKYLGQDYEQLRVRCLQSGTLFRDEAFPPVPQSLGYKDLGPNSSKTYGIKWKRPTE
LLSNPQFIVDGATRTDICQGALGDCWLLAAIASLTLNDTLLHRVVPHGQSFQNGYAGIFHFQAKLRPRNRSAEEGELAESKSSQKESAVQ

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>12869_12869_4_CAPN1-TNKS1BP1_CAPN1_chr11_64951063_ENST00000524773_TNKS1BP1_chr11_57068515_ENST00000532437_length(amino acids)=224AA_BP=151
MSEEIITPVYCTGVSAQVQKQRARELGLGRHENAIKYLGQDYEQLRVRCLQSGTLFRDEAFPPVPQSLGYKDLGPNSSKTYGIKWKRPTE
LLSNPQFIVDGATRTDICQGALGDCWLLAAIASLTLNDTLLHRVVPHGQSFQNGYAGIFHFQAKLRPRNRSAEEGELAESKSSQKESAVQ

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>12869_12869_5_CAPN1-TNKS1BP1_CAPN1_chr11_64951063_ENST00000527323_TNKS1BP1_chr11_57068515_ENST00000358252_length(amino acids)=235AA_BP=162
MGSEQAHLSGRMSEEIITPVYCTGVSAQVQKQRARELGLGRHENAIKYLGQDYEQLRVRCLQSGTLFRDEAFPPVPQSLGYKDLGPNSSK
TYGIKWKRPTELLSNPQFIVDGATRTDICQGALGDCWLLAAIASLTLNDTLLHRVVPHGQSFQNGYAGIFHFQAKLRPRNRSAEEGELAE

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>12869_12869_6_CAPN1-TNKS1BP1_CAPN1_chr11_64951063_ENST00000527323_TNKS1BP1_chr11_57068515_ENST00000532437_length(amino acids)=235AA_BP=162
MGSEQAHLSGRMSEEIITPVYCTGVSAQVQKQRARELGLGRHENAIKYLGQDYEQLRVRCLQSGTLFRDEAFPPVPQSLGYKDLGPNSSK
TYGIKWKRPTELLSNPQFIVDGATRTDICQGALGDCWLLAAIASLTLNDTLLHRVVPHGQSFQNGYAGIFHFQAKLRPRNRSAEEGELAE

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>12869_12869_7_CAPN1-TNKS1BP1_CAPN1_chr11_64951063_ENST00000533129_TNKS1BP1_chr11_57068515_ENST00000358252_length(amino acids)=224AA_BP=151
MSEEIITPVYCTGVSAQVQKQRARELGLGRHENAIKYLGQDYEQLRVRCLQSGTLFRDEAFPPVPQSLGYKDLGPNSSKTYGIKWKRPTE
LLSNPQFIVDGATRTDICQGALGDCWLLAAIASLTLNDTLLHRVVPHGQSFQNGYAGIFHFQAKLRPRNRSAEEGELAESKSSQKESAVQ

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>12869_12869_8_CAPN1-TNKS1BP1_CAPN1_chr11_64951063_ENST00000533129_TNKS1BP1_chr11_57068515_ENST00000532437_length(amino acids)=224AA_BP=151
MSEEIITPVYCTGVSAQVQKQRARELGLGRHENAIKYLGQDYEQLRVRCLQSGTLFRDEAFPPVPQSLGYKDLGPNSSKTYGIKWKRPTE
LLSNPQFIVDGATRTDICQGALGDCWLLAAIASLTLNDTLLHRVVPHGQSFQNGYAGIFHFQAKLRPRNRSAEEGELAESKSSQKESAVQ

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>12869_12869_9_CAPN1-TNKS1BP1_CAPN1_chr11_64951063_ENST00000533820_TNKS1BP1_chr11_57068515_ENST00000358252_length(amino acids)=263AA_BP=192
MSRDAAVGWGRGVARPCGVRLPFAECPAGVCSLPARPLLRAAAAARGCRRRSSRRCTALGCQPKCRSSGPGSWAWAAMRMPSSTWARIMS
SCGCDACRVGPSSVMRPSPRYPRAWVTRTWVPIPPRPMASSGSVPRNCCQTPSSLWMELPAQTSAREHWGTAGSWRPSPPSLSTTPSCTE

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>12869_12869_10_CAPN1-TNKS1BP1_CAPN1_chr11_64951063_ENST00000533820_TNKS1BP1_chr11_57068515_ENST00000532437_length(amino acids)=263AA_BP=192
MSRDAAVGWGRGVARPCGVRLPFAECPAGVCSLPARPLLRAAAAARGCRRRSSRRCTALGCQPKCRSSGPGSWAWAAMRMPSSTWARIMS
SCGCDACRVGPSSVMRPSPRYPRAWVTRTWVPIPPRPMASSGSVPRNCCQTPSSLWMELPAQTSAREHWGTAGSWRPSPPSLSTTPSCTE

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