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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>13469_13469_1_CBX5-GTSF1_CBX5_chr12_54645825_ENST00000550411_GTSF1_chr12_54858951_ENST00000305879_length(amino acids)=238AA_BP=108
MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKKMKEGENNKPREKSESNKR
KSNFSNSADDIKSKKKREPTPWTLRSYCNAPMTKTIKSGLAGFLIILSSAERIILMLQANWLLVPSMLATRFLELKLVIISQAVMTEVVL

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>13469_13469_2_CBX5-GTSF1_CBX5_chr12_54645825_ENST00000550411_GTSF1_chr12_54858951_ENST00000552397_length(amino acids)=238AA_BP=108
MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKKMKEGENNKPREKSESNKR
KSNFSNSADDIKSKKKREPTPWTLRSYCNAPMTKTIKSGLAGFLIILSSAERIILMLQANWLLVPSMLATRFLELKLVIISQAVMTEVVL

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