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Center for Computational Systems Medicine
check button Predicted full-length fusion amino acid sequences. For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among all the predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>14513_14513_1_CD44-EXT2_CD44_chr11_35160917_ENST00000263398_EXT2_chr11_44265699_ENST00000358681_length(amino acids)=154AA_BP=
MGAGASGARRHRHPATLQVPRPTSLAAPIIYSLSRARGGGRGARPGGLLLLKTSAGCLVTAPLAWVCPSLAPSLRLRSLFSTSNKNCSQL

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>14513_14513_2_CD44-EXT2_CD44_chr11_35160917_ENST00000263398_EXT2_chr11_44265699_ENST00000395673_length(amino acids)=154AA_BP=
MGAGASGARRHRHPATLQVPRPTSLAAPIIYSLSRARGGGRGARPGGLLLLKTSAGCLVTAPLAWVCPSLAPSLRLRSLFSTSNKNCSQL

--------------------------------------------------------------

>14513_14513_3_CD44-EXT2_CD44_chr11_35160917_ENST00000278386_EXT2_chr11_44265699_ENST00000358681_length(amino acids)=88AA_BP=1

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>14513_14513_4_CD44-EXT2_CD44_chr11_35160917_ENST00000278386_EXT2_chr11_44265699_ENST00000395673_length(amino acids)=88AA_BP=1

--------------------------------------------------------------

>14513_14513_5_CD44-EXT2_CD44_chr11_35160917_ENST00000352818_EXT2_chr11_44265699_ENST00000358681_length(amino acids)=82AA_BP=1

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>14513_14513_6_CD44-EXT2_CD44_chr11_35160917_ENST00000352818_EXT2_chr11_44265699_ENST00000395673_length(amino acids)=82AA_BP=1

--------------------------------------------------------------

>14513_14513_7_CD44-EXT2_CD44_chr11_35160917_ENST00000360158_EXT2_chr11_44265699_ENST00000358681_length(amino acids)=127AA_BP=1
MSQPHIQTSTNDTFHKLPMLGKLFSFSGKSSLYRTGSARCSTTLRGMVPKTEANLLMHSDRSAPGSAARGRVPRLRATKTCPWCPERTEG

--------------------------------------------------------------

>14513_14513_8_CD44-EXT2_CD44_chr11_35160917_ENST00000360158_EXT2_chr11_44265699_ENST00000395673_length(amino acids)=127AA_BP=1
MSQPHIQTSTNDTFHKLPMLGKLFSFSGKSSLYRTGSARCSTTLRGMVPKTEANLLMHSDRSAPGSAARGRVPRLRATKTCPWCPERTEG

--------------------------------------------------------------

>14513_14513_9_CD44-EXT2_CD44_chr11_35160917_ENST00000415148_EXT2_chr11_44265699_ENST00000358681_length(amino acids)=127AA_BP=1
MSQPHIQTSTNDTFHKLPMLGKLFSFSGKSSLYRTGSARCSTTLRGMVPKTEANLLMHSDRSAPGSAARGRVPRLRATKTCPWCPERTEG

--------------------------------------------------------------

>14513_14513_10_CD44-EXT2_CD44_chr11_35160917_ENST00000415148_EXT2_chr11_44265699_ENST00000395673_length(amino acids)=127AA_BP=1
MSQPHIQTSTNDTFHKLPMLGKLFSFSGKSSLYRTGSARCSTTLRGMVPKTEANLLMHSDRSAPGSAARGRVPRLRATKTCPWCPERTEG

--------------------------------------------------------------

>14513_14513_11_CD44-EXT2_CD44_chr11_35160917_ENST00000428726_EXT2_chr11_44265699_ENST00000358681_length(amino acids)=123AA_BP=1
MSQPHIQTSTNDTFHKLPMLGKLFSFSGKSSLYRTGSARCSTTLRGMVPKTEANLLMHSDRSAPGSAARGRVPRLRATKTCPWCPERTEG

--------------------------------------------------------------

>14513_14513_12_CD44-EXT2_CD44_chr11_35160917_ENST00000428726_EXT2_chr11_44265699_ENST00000395673_length(amino acids)=123AA_BP=1
MSQPHIQTSTNDTFHKLPMLGKLFSFSGKSSLYRTGSARCSTTLRGMVPKTEANLLMHSDRSAPGSAARGRVPRLRATKTCPWCPERTEG

--------------------------------------------------------------

>14513_14513_13_CD44-EXT2_CD44_chr11_35160917_ENST00000433354_EXT2_chr11_44265699_ENST00000358681_length(amino acids)=127AA_BP=1
MSQPHIQTSTNDTFHKLPMLGKLFSFSGKSSLYRTGSARCSTTLRGMVPKTEANLLMHSDRSAPGSAARGRVPRLRATKTCPWCPERTEG

--------------------------------------------------------------

>14513_14513_14_CD44-EXT2_CD44_chr11_35160917_ENST00000433354_EXT2_chr11_44265699_ENST00000395673_length(amino acids)=127AA_BP=1
MSQPHIQTSTNDTFHKLPMLGKLFSFSGKSSLYRTGSARCSTTLRGMVPKTEANLLMHSDRSAPGSAARGRVPRLRATKTCPWCPERTEG

--------------------------------------------------------------

>14513_14513_15_CD44-EXT2_CD44_chr11_35160917_ENST00000433892_EXT2_chr11_44265699_ENST00000358681_length(amino acids)=121AA_BP=1
MSQPHIQTSTNDTFHKLPMLGKLFSFSGKSSLYRTGSARCSTTLRGMVPKTEANLLMHSDRSAPGSAARGRVPRLRATKTCPWCPERTEG

--------------------------------------------------------------

>14513_14513_16_CD44-EXT2_CD44_chr11_35160917_ENST00000433892_EXT2_chr11_44265699_ENST00000395673_length(amino acids)=121AA_BP=1
MSQPHIQTSTNDTFHKLPMLGKLFSFSGKSSLYRTGSARCSTTLRGMVPKTEANLLMHSDRSAPGSAARGRVPRLRATKTCPWCPERTEG

--------------------------------------------------------------

>14513_14513_17_CD44-EXT2_CD44_chr11_35160917_ENST00000434472_EXT2_chr11_44265699_ENST00000358681_length(amino acids)=86AA_BP=1

--------------------------------------------------------------

>14513_14513_18_CD44-EXT2_CD44_chr11_35160917_ENST00000434472_EXT2_chr11_44265699_ENST00000395673_length(amino acids)=86AA_BP=1

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>14513_14513_19_CD44-EXT2_CD44_chr11_35160917_ENST00000437706_EXT2_chr11_44265699_ENST00000358681_length(amino acids)=127AA_BP=1
MSQPHIQTSTNDTFHKLPMLGKLFSFSGKSSLYRTGSARCSTTLRGMVPKTEANLLMHSDRSAPGSAARGRVPRLRATKTCPWCPERTEG

--------------------------------------------------------------

>14513_14513_20_CD44-EXT2_CD44_chr11_35160917_ENST00000437706_EXT2_chr11_44265699_ENST00000395673_length(amino acids)=127AA_BP=1
MSQPHIQTSTNDTFHKLPMLGKLFSFSGKSSLYRTGSARCSTTLRGMVPKTEANLLMHSDRSAPGSAARGRVPRLRATKTCPWCPERTEG

--------------------------------------------------------------

>14513_14513_21_CD44-EXT2_CD44_chr11_35160917_ENST00000449691_EXT2_chr11_44265699_ENST00000358681_length(amino acids)=127AA_BP=1
MSQPHIQTSTNDTFHKLPMLGKLFSFSGKSSLYRTGSARCSTTLRGMVPKTEANLLMHSDRSAPGSAARGRVPRLRATKTCPWCPERTEG

--------------------------------------------------------------

>14513_14513_22_CD44-EXT2_CD44_chr11_35160917_ENST00000449691_EXT2_chr11_44265699_ENST00000395673_length(amino acids)=127AA_BP=1
MSQPHIQTSTNDTFHKLPMLGKLFSFSGKSSLYRTGSARCSTTLRGMVPKTEANLLMHSDRSAPGSAARGRVPRLRATKTCPWCPERTEG

--------------------------------------------------------------

>14513_14513_23_CD44-EXT2_CD44_chr11_35160917_ENST00000526025_EXT2_chr11_44265699_ENST00000358681_length(amino acids)=154AA_BP=
MGAGASGARRHRHPATLQVPRPTSLAAPIIYSLSRARGGGRGARPGGLLLLKTSAGCLVTAPLAWVCPSLAPSLRLRSLFSTSNKNCSQL

--------------------------------------------------------------

>14513_14513_24_CD44-EXT2_CD44_chr11_35160917_ENST00000526025_EXT2_chr11_44265699_ENST00000395673_length(amino acids)=154AA_BP=
MGAGASGARRHRHPATLQVPRPTSLAAPIIYSLSRARGGGRGARPGGLLLLKTSAGCLVTAPLAWVCPSLAPSLRLRSLFSTSNKNCSQL

--------------------------------------------------------------

>14513_14513_25_CD44-EXT2_CD44_chr11_35160917_ENST00000526669_EXT2_chr11_44265699_ENST00000358681_length(amino acids)=123AA_BP=1
MSQPHIQTSTNDTFHKLPMLGKLFSFSGKSSLYRTGSARCSTTLRGMVPKTEANLLMHSDRSAPGSAARGRVPRLRATKTCPWCPERTEG

--------------------------------------------------------------

>14513_14513_26_CD44-EXT2_CD44_chr11_35160917_ENST00000526669_EXT2_chr11_44265699_ENST00000395673_length(amino acids)=123AA_BP=1
MSQPHIQTSTNDTFHKLPMLGKLFSFSGKSSLYRTGSARCSTTLRGMVPKTEANLLMHSDRSAPGSAARGRVPRLRATKTCPWCPERTEG

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